AlfalfaGEDB | Msa0422230

M. sativa cultivar zhongmu-4 / Msa0422230

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0016787 GO:0019538 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564
PFAM: PF20133.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422230	XP_003601843.1	96.507	229	6	1	1	229	1	227	1.59e-161	456

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422230	sp\|Q8LDL0\|HHL1_ARATH	69.787	235	60	5	1	229	1	230	2.25e-111	322

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422230	G7J2I7	96.507	229	6	1	1	229	1	227	7.62e-162	456

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0422230	0.815939	7.148781e-52	-8.615850e-47
Msa0000610	Msa0422230	0.815404	9.407374e-52	-8.615850e-47
Msa0001510	Msa0422230	0.914051	3.015828e-84	-8.615850e-47
Msa0001540	Msa0422230	0.829517	4.923913e-55	-8.615850e-47
Msa0002110	Msa0422230	0.840865	6.720792e-58	-8.615850e-47
Msa0002690	Msa0422230	0.890838	6.858997e-74	-8.615850e-47
Msa0002700	Msa0422230	0.887197	1.763270e-72	-8.615850e-47
Msa0003340	Msa0422230	0.831514	1.599199e-55	-8.615850e-47
Msa0004180	Msa0422230	0.876691	1.141639e-68	-8.615850e-47
Msa0005190	Msa0422230	0.805685	1.184936e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422230	MtrunA17_Chr3g0123081	96.507	229	6	1	1	229	1	227	1.47e-165	456

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0422230	AT1G67700.2	69.787	235	60	5	1	229	1	230	2.29e-112	322
Msa0422230	AT1G67700.5	69.787	235	60	5	1	229	1	230	2.29e-112	322
Msa0422230	AT1G67700.4	69.787	235	60	5	1	229	1	230	2.36e-112	322
Msa0422230	AT1G67700.1	69.787	235	60	5	1	229	1	230	2.36e-112	322
Msa0422230	AT1G67700.3	69.362	235	60	6	1	229	1	229	7.97e-110	315

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Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTCTAAAGCTCATA+CGG	0.537225	3_2:-71351421	None:intergenic
AACTAACTAACTCAGGTAAC+TGG	0.361517	3_2:-71348755	None:intergenic
AATGCAAGAATATTACAACT+CGG	0.706659	3_2:-71351620	None:intergenic
ACAACACCGTGTACTAAAGT+CGG	0.619103	3_2:+71350295	Msa0422230:CDS
ACTAACTCAGGTAACTGGAT+AGG	0.494951	3_2:-71348750	None:intergenic
AGAACATAAAATTATGTGTT+GGG	0.454543	3_2:-71351519	None:intergenic
AGAGAGAGAATTCGATAAAA+GGG	0.454676	3_2:-71348719	None:intergenic
AGATGTAAAGGAGTCCTTTG+GGG	0.702608	3_2:+71351146	Msa0422230:CDS
ATCTCGAAACGCATGGAAGT+AGG	0.561046	3_2:+71348804	Msa0422230:exon
ATTACCGTCGTCTTCAATTT+TGG	0.126709	3_2:-71349033	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGAGAATTCGATAAAA+GGG	-	chr3_2:71348722-71348741	None:intergenic	30.0%
GTATGGCTAATGTTTATCTT+TGG	+	chr3_2:71349078-71349097	Msa0422230:CDS	30.0%
TATCCTCTTAGTATTGTTTC+TGG	+	chr3_2:71349101-71349120	Msa0422230:CDS	30.0%
TTAGGGGAAAAAATCTTACT+CGG	-	chr3_2:71349226-71349245	None:intergenic	30.0%
CACAAATAATCAGCAACAAT+GGG	-	chr3_2:71349405-71349424	None:intergenic	30.0%
ACACAAATAATCAGCAACAA+TGG	-	chr3_2:71349406-71349425	None:intergenic	30.0%
AAATGATTCTAACTTGAAGC+CGG	+	chr3_2:71349433-71349452	Msa0422230:intron	30.0%
AAGGTAAAGTCATTCATGTT+TGG	-	chr3_2:71349537-71349556	None:intergenic	30.0%
ATAGCAAGCAGTTAAATACA+TGG	-	chr3_2:71349711-71349730	None:intergenic	30.0%
GGGACTAAATTCATAATAAG+CGG	-	chr3_2:71349788-71349807	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	71348695	71351826	71348695	ID=Msa0422230;Name=Msa0422230
chr3_2	mRNA	71348695	71351826	71348695	ID=Msa0422230-mRNA-1;Parent=Msa0422230;Name=Msa0422230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=121\|1\|1\|1\|0.75\|0.8\|5\|503\|229
chr3_2	exon	71348695	71349226	71348695	ID=Msa0422230-mRNA-1:exon:17381;Parent=Msa0422230-mRNA-1
chr3_2	exon	71350263	71350349	71350263	ID=Msa0422230-mRNA-1:exon:17382;Parent=Msa0422230-mRNA-1
chr3_2	exon	71350453	71350500	71350453	ID=Msa0422230-mRNA-1:exon:17383;Parent=Msa0422230-mRNA-1
chr3_2	exon	71351090	71351269	71351090	ID=Msa0422230-mRNA-1:exon:17384;Parent=Msa0422230-mRNA-1
chr3_2	exon	71351360	71351826	71351360	ID=Msa0422230-mRNA-1:exon:17385;Parent=Msa0422230-mRNA-1
chr3_2	five_prime_UTR	71348695	71348815	71348695	ID=Msa0422230-mRNA-1:five_prime_utr;Parent=Msa0422230-mRNA-1
chr3_2	CDS	71348816	71349226	71348816	ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2	CDS	71350263	71350349	71350263	ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2	CDS	71350453	71350500	71350453	ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2	CDS	71351090	71351233	71351090	ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2	three_prime_UTR	71351234	71351269	71351234	ID=Msa0422230-mRNA-1:three_prime_utr;Parent=Msa0422230-mRNA-1
chr3_2	three_prime_UTR	71351360	71351826	71351360	ID=Msa0422230-mRNA-1:three_prime_utr;Parent=Msa0422230-mRNA-1

Gene Sequence

>Msa0422230

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCTCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0422230

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*