AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422230 MtrunA17_Chr3g0123081 96.507 229 6 1 1 229 1 227 1.47e-165 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422230 AT1G67700.2 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa0422230 AT1G67700.5 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa0422230 AT1G67700.4 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa0422230 AT1G67700.1 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa0422230 AT1G67700.3 69.362 235 60 6 1 229 1 229 7.97e-110 315

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGTTGGCGTTGAGTTC+TGG 0.117900 3_2:-71348919 None:intergenic
ATTACCGTCGTCTTCAATTT+TGG 0.126709 3_2:-71349033 None:intergenic
TATCCTCTTAGTATTGTTTC+TGG 0.147550 3_2:+71349101 Msa0422230:CDS
CGAATGAAGACGACGAATTT+AGG 0.163591 3_2:-71349056 None:intergenic
TCTTGGCAAATTTATTTATA+AGG 0.207596 3_2:+71349166 Msa0422230:CDS
GAGAGAGAGAATTCGATAAA+AGG 0.261619 3_2:-71348720 None:intergenic
TGTGCTAATACCAGGGTTAA+AGG 0.270565 3_2:+71351346 Msa0422230:intron
GCTTTGTGCTGTTTGTAAAT+TGG 0.299833 3_2:+71351439 Msa0422230:three_prime_UTR
GCTGTTTGTAAATTGGTTAA+TGG 0.314824 3_2:+71351446 Msa0422230:three_prime_UTR
GTATGGCTAATGTTTATCTT+TGG 0.328706 3_2:+71349078 Msa0422230:CDS
AACTAACTAACTCAGGTAAC+TGG 0.361517 3_2:-71348755 None:intergenic
GGAGATGTAAAGGAGTCCTT+TGG 0.366310 3_2:+71351144 Msa0422230:CDS
TGGTACCACTGCTAAAATTA+TGG 0.385812 3_2:+71349124 Msa0422230:CDS
TGATGTTGGCGTTGAGTTCT+GGG 0.389647 3_2:-71348918 None:intergenic
TTGAATCGTTAAGTGCTGTT+TGG 0.396064 3_2:+71351396 Msa0422230:three_prime_UTR
TTAAAGGATGAACTTATATC+AGG 0.402851 3_2:+71351362 Msa0422230:three_prime_UTR
GAGTGAGTCGTTGTGGAACC+TGG 0.423768 3_2:-71348874 None:intergenic
TGAGTTCTGGGGAATTGTCT+TGG 0.431127 3_2:-71348906 None:intergenic
TAAAATTATGTGTTGGGTGC+AGG 0.440944 3_2:-71351513 None:intergenic
GAGATGTAAAGGAGTCCTTT+GGG 0.442632 3_2:+71351145 Msa0422230:CDS
TGCAGGTATAAGAACAAAAC+AGG 0.451906 3_2:-71351496 None:intergenic
GAAATTATGTGTGATTATAA+AGG 0.452430 3_2:-71351557 None:intergenic
GATTATGAATTGCAGGAGAA+TGG 0.452904 3_2:+71350438 Msa0422230:intron
TCGGCTACTGAATTCAGATA+TGG 0.454393 3_2:+71350314 Msa0422230:CDS
AGAACATAAAATTATGTGTT+GGG 0.454543 3_2:-71351519 None:intergenic
AGAGAGAGAATTCGATAAAA+GGG 0.454676 3_2:-71348719 None:intergenic
CATGCGTTTCGAGATTCTCT+CGG 0.455696 3_2:-71348796 None:intergenic
TGATGCAACATATTTGATAG+AGG 0.456476 3_2:+71351248 Msa0422230:three_prime_UTR
TTCTACCAGTGATGTTATTG+AGG 0.459749 3_2:+71350479 Msa0422230:CDS
ACTAACTCAGGTAACTGGAT+AGG 0.494951 3_2:-71348750 None:intergenic
TCTCGGAGTTGTTGTGATGA+TGG 0.503996 3_2:-71348779 None:intergenic
CACTATCAAGTTCAAGCTCC+AGG 0.504458 3_2:+71348856 Msa0422230:CDS
CTAACTCAGGTAACTGGATA+GGG 0.508336 3_2:-71348749 None:intergenic
ATTCGTCGTCTTCATTCGTA+TGG 0.513591 3_2:+71349061 Msa0422230:CDS
TCTGGGGAATTGTCTTGGAA+TGG 0.516106 3_2:-71348901 None:intergenic
TCAGAAATGTCTTAAAGTAA+TGG 0.522609 3_2:-71351581 None:intergenic
CCTCTTAGTATTGTTTCTGG+TGG 0.528582 3_2:+71349104 Msa0422230:CDS
TGTCTTGGTTGTTGAAGCAA+AGG 0.532305 3_2:+71348956 Msa0422230:CDS
AAAGCTTTCTAAAGCTCATA+CGG 0.537225 3_2:-71351421 None:intergenic
GTCTTGGTTGTTGAAGCAAA+GGG 0.544651 3_2:+71348957 Msa0422230:CDS
CCACCAGAAACAATACTAAG+AGG 0.550315 3_2:-71349104 None:intergenic
TCAATTCAAATAGGATGAGA+AGG 0.553484 3_2:+71350250 Msa0422230:intron
CCAAGACATGGTGGTGGTGG+TGG 0.560506 3_2:-71348941 None:intergenic
ATCTCGAAACGCATGGAAGT+AGG 0.561046 3_2:+71348804 Msa0422230:exon
CTGGAGCTTGAACTTGATAG+TGG 0.561983 3_2:-71348855 None:intergenic
TGAATCTTCCTCTGACTCAT+CGG 0.568977 3_2:-71351193 None:intergenic
TATCACCTCAATAACATCAC+TGG 0.580790 3_2:-71350484 None:intergenic
CAACCAAGACATGGTGGTGG+TGG 0.586870 3_2:-71348944 None:intergenic
TGGAGAAGAGTGAGTCGTTG+TGG 0.587691 3_2:-71348881 None:intergenic
TGATGGTAACTAACTAACTC+AGG 0.598757 3_2:-71348762 None:intergenic
CGAGAGAATCTCGAAACGCA+TGG 0.599024 3_2:+71348797 Msa0422230:exon
TACTGCTACCGATGAGTCAG+AGG 0.607803 3_2:+71351185 Msa0422230:CDS
CAGAACATAAAATTATGTGT+TGG 0.611659 3_2:-71351520 None:intergenic
ACAACACCGTGTACTAAAGT+CGG 0.619103 3_2:+71350295 Msa0422230:CDS
TAACGATGTTATTTCCCCAA+AGG 0.619108 3_2:-71351160 None:intergenic
TTGCTTCAACAACCAAGACA+TGG 0.623521 3_2:-71348953 None:intergenic
GAGCTTGAACTTGATAGTGG+TGG 0.644572 3_2:-71348852 None:intergenic
ATTATGTGTGATTATAAAGG+CGG 0.648477 3_2:-71351554 None:intergenic
GATGTTGGCGTTGAGTTCTG+GGG 0.652469 3_2:-71348917 None:intergenic
CAGTAGCCGACTTTAGTACA+CGG 0.657329 3_2:-71350301 None:intergenic
CAACAACCAAGACATGGTGG+TGG 0.667199 3_2:-71348947 None:intergenic
CTTCAACAACCAAGACATGG+TGG 0.675309 3_2:-71348950 None:intergenic
TTACCCAAAATTGAAGACGA+CGG 0.694339 3_2:+71349029 Msa0422230:CDS
AGATGTAAAGGAGTCCTTTG+GGG 0.702608 3_2:+71351146 Msa0422230:CDS
AATGCAAGAATATTACAACT+CGG 0.706659 3_2:-71351620 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAAAAAAAAGTTA+GGG - chr3_2:71349243-71349262 None:intergenic 10.0%
!! AAATTAATGAAAAAAAAGTT+AGG - chr3_2:71349244-71349263 None:intergenic 10.0%
!!! TTTAAATGTTCATAATTTTA+TGG + chr3_2:71349861-71349880 Msa0422230:intron 10.0%
!! AAATATATGTATTGAAATAT+AGG - chr3_2:71350361-71350380 None:intergenic 10.0%
!! ATTAATGAAAAAAAAGTTAG+GGG - chr3_2:71349242-71349261 None:intergenic 15.0%
!! AAAAAAAAAAATATCGAGAA+TGG + chr3_2:71349312-71349331 Msa0422230:intron 15.0%
!! AAAAAAAAAATATCGAGAAT+GGG + chr3_2:71349313-71349332 Msa0422230:intron 15.0%
!! TATGAACATTTAAAAAATCA+TGG - chr3_2:71349855-71349874 None:intergenic 15.0%
!! TAATAACTTTACAGAAATAA+TGG + chr3_2:71350640-71350659 Msa0422230:intron 15.0%
!! ATTTATGAAATATGATAGAT+AGG + chr3_2:71350713-71350732 Msa0422230:intron 15.0%
!!! TTTTATTGTTTGTTGTTTTA+TGG + chr3_2:71351719-71351738 Msa0422230:three_prime_UTR 15.0%
!!! TTTATTGTTTGTTGTTTTAT+GGG + chr3_2:71351720-71351739 Msa0422230:three_prime_UTR 15.0%
!! TCTTGGCAAATTTATTTATA+AGG + chr3_2:71349166-71349185 Msa0422230:CDS 20.0%
!! AAAAAAAAATATCGAGAATG+GGG + chr3_2:71349314-71349333 Msa0422230:intron 20.0%
!!! TTTACCTTCAAGATAATTTT+AGG + chr3_2:71349549-71349568 Msa0422230:intron 20.0%
!! ACTCTATTAAACTTTCAAAT+TGG + chr3_2:71349684-71349703 Msa0422230:intron 20.0%
!! TAGTAAGTGGTTAAAATATA+AGG - chr3_2:71349743-71349762 None:intergenic 20.0%
!! ACAAATAAAAGTTCAGTTTA+AGG - chr3_2:71350517-71350536 None:intergenic 20.0%
!!! ATCTCTACAATTTTCAATTA+GGG - chr3_2:71350913-71350932 None:intergenic 20.0%
!!! AATCTCTACAATTTTCAATT+AGG - chr3_2:71350914-71350933 None:intergenic 20.0%
!!! ATGCTTTCTTTTTAGTTATA+AGG + chr3_2:71350987-71351006 Msa0422230:intron 20.0%
!! AGAACATAAAATTATGTGTT+GGG - chr3_2:71351522-71351541 None:intergenic 20.0%
!! GAAATTATGTGTGATTATAA+AGG - chr3_2:71351560-71351579 None:intergenic 20.0%
! AAAGTTAAGGACTAATATAG+TGG - chr3_2:71349610-71349629 None:intergenic 25.0%
! ATATTAGTCCTTAACTTTGT+AGG + chr3_2:71349612-71349631 Msa0422230:intron 25.0%
! TATTAGTCCTTAACTTTGTA+GGG + chr3_2:71349613-71349632 Msa0422230:intron 25.0%
!! AAGATCAAATTGATAGTAAG+TGG - chr3_2:71349756-71349775 None:intergenic 25.0%
! ATAGACAACGGATAAAATTT+CGG + chr3_2:71350035-71350054 Msa0422230:intron 25.0%
!! TTTTTCTTGGTTATGTATGT+TGG + chr3_2:71350187-71350206 Msa0422230:intron 25.0%
!!! TTTTTCAGATTATGAATTGC+AGG + chr3_2:71350431-71350450 Msa0422230:intron 25.0%
! TATTTAAAGACAATACTCCA+AGG + chr3_2:71350810-71350829 Msa0422230:intron 25.0%
!!! CTATTTAAAGACTTGCTAAT+AGG + chr3_2:71350833-71350852 Msa0422230:intron 25.0%
!!! TTTTGTTATGATGGTTGTTT+AGG - chr3_2:71350886-71350905 None:intergenic 25.0%
!!! TAGGGATATTTTTGTTATGA+TGG - chr3_2:71350895-71350914 None:intergenic 25.0%
!!! GGTTCTTTTTCATAATATTG+AGG + chr3_2:71351008-71351027 Msa0422230:intron 25.0%
!! GATAAAGTGAAAGACTTTTT+CGG + chr3_2:71351123-71351142 Msa0422230:CDS 25.0%
! TTAAAGGATGAACTTATATC+AGG + chr3_2:71351362-71351381 Msa0422230:three_prime_UTR 25.0%
! CAGAACATAAAATTATGTGT+TGG - chr3_2:71351523-71351542 None:intergenic 25.0%
! ATTATGTGTGATTATAAAGG+CGG - chr3_2:71351557-71351576 None:intergenic 25.0%
! TCAGAAATGTCTTAAAGTAA+TGG - chr3_2:71351584-71351603 None:intergenic 25.0%
! AATGCAAGAATATTACAACT+CGG - chr3_2:71351623-71351642 None:intergenic 25.0%
!!! ATTCTTGCATTTTATTTCAC+AGG + chr3_2:71351632-71351651 Msa0422230:three_prime_UTR 25.0%
AGAGAGAGAATTCGATAAAA+GGG - chr3_2:71348722-71348741 None:intergenic 30.0%
GTATGGCTAATGTTTATCTT+TGG + chr3_2:71349078-71349097 Msa0422230:CDS 30.0%
TATCCTCTTAGTATTGTTTC+TGG + chr3_2:71349101-71349120 Msa0422230:CDS 30.0%
! GCTGCTAAAGATAATTTTCT+TGG + chr3_2:71349149-71349168 Msa0422230:CDS 30.0%
TTAGGGGAAAAAATCTTACT+CGG - chr3_2:71349226-71349245 None:intergenic 30.0%
CACAAATAATCAGCAACAAT+GGG - chr3_2:71349405-71349424 None:intergenic 30.0%
ACACAAATAATCAGCAACAA+TGG - chr3_2:71349406-71349425 None:intergenic 30.0%
AAATGATTCTAACTTGAAGC+CGG + chr3_2:71349433-71349452 Msa0422230:intron 30.0%
! AAACTTAAAGCTCTAATGTC+CGG - chr3_2:71349455-71349474 None:intergenic 30.0%
AAGGTAAAGTCATTCATGTT+TGG - chr3_2:71349537-71349556 None:intergenic 30.0%
! ACCTTCAAGATAATTTTAGG+CGG + chr3_2:71349552-71349571 Msa0422230:intron 30.0%
! TTTGAGATATTCACAATCTC+AGG - chr3_2:71349654-71349673 None:intergenic 30.0%
ATAGCAAGCAGTTAAATACA+TGG - chr3_2:71349711-71349730 None:intergenic 30.0%
!! TTAACTGCTTGCTATCAATT+AGG + chr3_2:71349716-71349735 Msa0422230:intron 30.0%
GGGACTAAATTCATAATAAG+CGG - chr3_2:71349788-71349807 None:intergenic 30.0%
TCACATTGATGTTAGTCAAA+TGG - chr3_2:71349935-71349954 None:intergenic 30.0%
GAACTACGTGTATGAAAATA+CGG + chr3_2:71349975-71349994 Msa0422230:intron 30.0%
TGTGTGACCAACTATAATTA+TGG + chr3_2:71349998-71350017 Msa0422230:intron 30.0%
TCTCTTGCCATAATTATAGT+TGG - chr3_2:71350008-71350027 None:intergenic 30.0%
! AGAGACTTTTTGATAGACAA+CGG + chr3_2:71350023-71350042 Msa0422230:intron 30.0%
! TGAGCTCTTTTTAACCATTA+TGG + chr3_2:71350126-71350145 Msa0422230:intron 30.0%
AGAAATTAGAGTCTCCATAA+TGG - chr3_2:71350143-71350162 None:intergenic 30.0%
!!! ATGATGAGCATGTTTTTTCT+TGG + chr3_2:71350174-71350193 Msa0422230:intron 30.0%
TCAATTCAAATAGGATGAGA+AGG + chr3_2:71350250-71350269 Msa0422230:intron 30.0%
TCACTGAATTCATCTTCAAT+TGG - chr3_2:71350389-71350408 None:intergenic 30.0%
TTTAAACCTTATACCGCATT+AGG + chr3_2:71350555-71350574 Msa0422230:intron 30.0%
TTAAACCTTATACCGCATTA+GGG + chr3_2:71350556-71350575 Msa0422230:intron 30.0%
AAAAGTTACATGAACAACCA+GGG - chr3_2:71350615-71350634 None:intergenic 30.0%
! AATAATGGAAACTGTCTGTT+AGG + chr3_2:71350655-71350674 Msa0422230:intron 30.0%
TTTCTATTCCATTCAATTCC+CGG - chr3_2:71350684-71350703 None:intergenic 30.0%
!! AGAGTATTGTCTATTGTGAA+GGG - chr3_2:71350765-71350784 None:intergenic 30.0%
!! TAGAGTATTGTCTATTGTGA+AGG - chr3_2:71350766-71350785 None:intergenic 30.0%
!!! GTTTTTAGTTTATCTGGTGT+AGG - chr3_2:71351096-71351115 None:intergenic 30.0%
!!! GCTACAGTTTTTAGTTTATC+TGG - chr3_2:71351102-71351121 None:intergenic 30.0%
TGATGCAACATATTTGATAG+AGG + chr3_2:71351248-71351267 Msa0422230:three_prime_UTR 30.0%
TATGCACTGTAATGAATACA+TGG + chr3_2:71351283-71351302 Msa0422230:intron 30.0%
!!! ATTGTTTTTGTGCTAATACC+AGG + chr3_2:71351338-71351357 Msa0422230:intron 30.0%
!!! TTGTTTTTGTGCTAATACCA+GGG + chr3_2:71351339-71351358 Msa0422230:intron 30.0%
!! AAAGCTTTCTAAAGCTCATA+CGG - chr3_2:71351424-71351443 None:intergenic 30.0%
GCTGTTTGTAAATTGGTTAA+TGG + chr3_2:71351446-71351465 Msa0422230:three_prime_UTR 30.0%
GAGAGAGAGAATTCGATAAA+AGG - chr3_2:71348723-71348742 None:intergenic 35.0%
AACTAACTAACTCAGGTAAC+TGG - chr3_2:71348758-71348777 None:intergenic 35.0%
TGATGGTAACTAACTAACTC+AGG - chr3_2:71348765-71348784 None:intergenic 35.0%
GTTGAAGCAAAGGGTAAAAA+AGG + chr3_2:71348966-71348985 Msa0422230:CDS 35.0%
!! TCTTCAATTTTGGGTAAAGG+AGG - chr3_2:71349026-71349045 None:intergenic 35.0%
!! TCGTCTTCAATTTTGGGTAA+AGG - chr3_2:71349029-71349048 None:intergenic 35.0%
TTACCCAAAATTGAAGACGA+CGG + chr3_2:71349029-71349048 Msa0422230:CDS 35.0%
! TTACCGTCGTCTTCAATTTT+GGG - chr3_2:71349035-71349054 None:intergenic 35.0%
! ATTACCGTCGTCTTCAATTT+TGG - chr3_2:71349036-71349055 None:intergenic 35.0%
TGGTACCACTGCTAAAATTA+TGG + chr3_2:71349124-71349143 Msa0422230:CDS 35.0%
!! AGCAACCATAATTTTAGCAG+TGG - chr3_2:71349132-71349151 None:intergenic 35.0%
TCCGCCTAAAATTATCTTGA+AGG - chr3_2:71349556-71349575 None:intergenic 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr3_2:71349888-71349907 None:intergenic 35.0%
AATTCGTCCCTGACTTTATA+GGG - chr3_2:71349900-71349919 None:intergenic 35.0%
AAATTCGTCCCTGACTTTAT+AGG - chr3_2:71349901-71349920 None:intergenic 35.0%
! TGTATGTTGGTTATGCATGT+TGG + chr3_2:71350200-71350219 Msa0422230:intron 35.0%
CTGCTTGCTTCAATTCAAAT+AGG + chr3_2:71350241-71350260 Msa0422230:intron 35.0%
GATTATGAATTGCAGGAGAA+TGG + chr3_2:71350438-71350457 Msa0422230:intron 35.0%
TTCTACCAGTGATGTTATTG+AGG + chr3_2:71350479-71350498 Msa0422230:CDS 35.0%
TATCACCTCAATAACATCAC+TGG - chr3_2:71350487-71350506 None:intergenic 35.0%
GAACATATATGTCCCTAATG+CGG - chr3_2:71350571-71350590 None:intergenic 35.0%
GAAAAGTTACATGAACAACC+AGG - chr3_2:71350616-71350635 None:intergenic 35.0%
TTCTATTCCATTCAATTCCC+GGG - chr3_2:71350683-71350702 None:intergenic 35.0%
! GAGTATTGTCTATTGTGAAG+GGG - chr3_2:71350764-71350783 None:intergenic 35.0%
AGCAAGTCTTTAAATAGCCT+TGG - chr3_2:71350830-71350849 None:intergenic 35.0%
!! TAGGTGGTTAGTTTGTTATG+TGG - chr3_2:71350867-71350886 None:intergenic 35.0%
TGTTATGATGGTTGTTTAGG+TGG - chr3_2:71350883-71350902 None:intergenic 35.0%
!!! AGACTTTTTCGGAGATGTAA+AGG + chr3_2:71351134-71351153 Msa0422230:CDS 35.0%
!! TAACGATGTTATTTCCCCAA+AGG - chr3_2:71351163-71351182 None:intergenic 35.0%
CACTGTAATGAATACATGGT+AGG + chr3_2:71351287-71351306 Msa0422230:intron 35.0%
ATAAGTTCATCCTTTAACCC+TGG - chr3_2:71351359-71351378 None:intergenic 35.0%
! TTGAATCGTTAAGTGCTGTT+TGG + chr3_2:71351396-71351415 Msa0422230:three_prime_UTR 35.0%
!! GCTTTGTGCTGTTTGTAAAT+TGG + chr3_2:71351439-71351458 Msa0422230:three_prime_UTR 35.0%
TGCAGGTATAAGAACAAAAC+AGG - chr3_2:71351499-71351518 None:intergenic 35.0%
TAAAATTATGTGTTGGGTGC+AGG - chr3_2:71351516-71351535 None:intergenic 35.0%
CTAACTCAGGTAACTGGATA+GGG - chr3_2:71348752-71348771 None:intergenic 40.0%
ACTAACTCAGGTAACTGGAT+AGG - chr3_2:71348753-71348772 None:intergenic 40.0%
TTGCTTCAACAACCAAGACA+TGG - chr3_2:71348956-71348975 None:intergenic 40.0%
TGTCTTGGTTGTTGAAGCAA+AGG + chr3_2:71348956-71348975 Msa0422230:CDS 40.0%
GTCTTGGTTGTTGAAGCAAA+GGG + chr3_2:71348957-71348976 Msa0422230:CDS 40.0%
!! TCAATTTTGGGTAAAGGAGG+AGG - chr3_2:71349023-71349042 None:intergenic 40.0%
CGAATGAAGACGACGAATTT+AGG - chr3_2:71349059-71349078 None:intergenic 40.0%
ATTCGTCGTCTTCATTCGTA+TGG + chr3_2:71349061-71349080 Msa0422230:CDS 40.0%
CCACCAGAAACAATACTAAG+AGG - chr3_2:71349107-71349126 None:intergenic 40.0%
!! CCTCTTAGTATTGTTTCTGG+TGG + chr3_2:71349104-71349123 Msa0422230:CDS 40.0%
AGTGGTATGATTCTCGCTTA+GGG - chr3_2:71349372-71349391 None:intergenic 40.0%
TAGTGGTATGATTCTCGCTT+AGG - chr3_2:71349373-71349392 None:intergenic 40.0%
AATCAGCAACAATGGGCATT+TGG - chr3_2:71349398-71349417 None:intergenic 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr3_2:71349627-71349646 Msa0422230:intron 40.0%
TTTGAGAGCCCTATAAAGTC+AGG + chr3_2:71349889-71349908 Msa0422230:intron 40.0%
TTGAGAGCCCTATAAAGTCA+GGG + chr3_2:71349890-71349909 Msa0422230:intron 40.0%
AAAGTCAGGGACGAATTTGA+TGG + chr3_2:71349903-71349922 Msa0422230:intron 40.0%
TGACTAACATCAATGTGACG+TGG + chr3_2:71349937-71349956 Msa0422230:intron 40.0%
AAGCAGTGAGTAACAAAGAC+AGG - chr3_2:71350227-71350246 None:intergenic 40.0%
ACAACACCGTGTACTAAAGT+CGG + chr3_2:71350295-71350314 Msa0422230:CDS 40.0%
TCGGCTACTGAATTCAGATA+TGG + chr3_2:71350314-71350333 Msa0422230:CDS 40.0%
TATGTCCCTAATGCGGTATA+AGG - chr3_2:71350564-71350583 None:intergenic 40.0%
AGTACAACATAGAAGAACCC+TGG + chr3_2:71350595-71350614 Msa0422230:intron 40.0%
GAGATGTAAAGGAGTCCTTT+GGG + chr3_2:71351145-71351164 Msa0422230:CDS 40.0%
AGATGTAAAGGAGTCCTTTG+GGG + chr3_2:71351146-71351165 Msa0422230:CDS 40.0%
TGAATCTTCCTCTGACTCAT+CGG - chr3_2:71351196-71351215 None:intergenic 40.0%
TGTGCTAATACCAGGGTTAA+AGG + chr3_2:71351346-71351365 Msa0422230:intron 40.0%
TCTCGGAGTTGTTGTGATGA+TGG - chr3_2:71348782-71348801 None:intergenic 45.0%
CATGCGTTTCGAGATTCTCT+CGG - chr3_2:71348799-71348818 None:intergenic 45.0%
ATCTCGAAACGCATGGAAGT+AGG + chr3_2:71348804-71348823 Msa0422230:exon 45.0%
!! GAGCTTGAACTTGATAGTGG+TGG - chr3_2:71348855-71348874 None:intergenic 45.0%
CTGGAGCTTGAACTTGATAG+TGG - chr3_2:71348858-71348877 None:intergenic 45.0%
CACTATCAAGTTCAAGCTCC+AGG + chr3_2:71348856-71348875 Msa0422230:CDS 45.0%
TCTGGGGAATTGTCTTGGAA+TGG - chr3_2:71348904-71348923 None:intergenic 45.0%
!! TGAGTTCTGGGGAATTGTCT+TGG - chr3_2:71348909-71348928 None:intergenic 45.0%
! TGATGTTGGCGTTGAGTTCT+GGG - chr3_2:71348921-71348940 None:intergenic 45.0%
CTTCAACAACCAAGACATGG+TGG - chr3_2:71348953-71348972 None:intergenic 45.0%
!! ATTTTGGGTAAAGGAGGAGG+AGG - chr3_2:71349020-71349039 None:intergenic 45.0%
GGCATTCCGAGAATTGAACT+CGG + chr3_2:71349335-71349354 Msa0422230:intron 45.0%
GCATTCCGAGAATTGAACTC+GGG + chr3_2:71349336-71349355 Msa0422230:intron 45.0%
ACAATGGGCATTTGGTCTAG+TGG - chr3_2:71349390-71349409 None:intergenic 45.0%
!! GAGAGCACCCTACAAAGTTA+AGG - chr3_2:71349623-71349642 None:intergenic 45.0%
AGTGCTTCACAGAGTCAAGA+GGG - chr3_2:71349808-71349827 None:intergenic 45.0%
TAGTGCTTCACAGAGTCAAG+AGG - chr3_2:71349809-71349828 None:intergenic 45.0%
! CAGTAGCCGACTTTAGTACA+CGG - chr3_2:71350304-71350323 None:intergenic 45.0%
GAAACTGTCTGTTAGGAACC+CGG + chr3_2:71350662-71350681 Msa0422230:intron 45.0%
AAACTGTCTGTTAGGAACCC+GGG + chr3_2:71350663-71350682 Msa0422230:intron 45.0%
TTAGGAACCCGGGAATTGAA+TGG + chr3_2:71350673-71350692 Msa0422230:intron 45.0%
ATTGTGAAGGGGAAAACCCT+TGG - chr3_2:71350753-71350772 None:intergenic 45.0%
GGAGATGTAAAGGAGTCCTT+TGG + chr3_2:71351144-71351163 Msa0422230:CDS 45.0%
! GATACTTTTCAGAGAGAGCG+AGG + chr3_2:71351696-71351715 Msa0422230:three_prime_UTR 45.0%
!!! TAATATTTTTAAATTTCTAA+TGG + chr3_2:71351310-71351329 Msa0422230:intron 5.0%
CGAGAGAATCTCGAAACGCA+TGG + chr3_2:71348797-71348816 Msa0422230:exon 50.0%
TGGAGAAGAGTGAGTCGTTG+TGG - chr3_2:71348884-71348903 None:intergenic 50.0%
! GATGTTGGCGTTGAGTTCTG+GGG - chr3_2:71348920-71348939 None:intergenic 50.0%
! GTGATGTTGGCGTTGAGTTC+TGG - chr3_2:71348922-71348941 None:intergenic 50.0%
CAACAACCAAGACATGGTGG+TGG - chr3_2:71348950-71348969 None:intergenic 50.0%
GAGGTCCCGAGTTCAATTCT+CGG - chr3_2:71349344-71349363 None:intergenic 50.0%
AGGAGAGAATCTCCACTCCA+AGG + chr3_2:71350733-71350752 Msa0422230:intron 50.0%
GGAGAGAATCTCCACTCCAA+GGG + chr3_2:71350734-71350753 Msa0422230:intron 50.0%
TGGTGTAGGAAGCTGCAAGT+TGG - chr3_2:71351082-71351101 None:intergenic 50.0%
TACTGCTACCGATGAGTCAG+AGG + chr3_2:71351185-71351204 Msa0422230:CDS 50.0%
GAGTGAGTCGTTGTGGAACC+TGG - chr3_2:71348877-71348896 None:intergenic 55.0%
!! CAACCAAGACATGGTGGTGG+TGG - chr3_2:71348947-71348966 None:intergenic 55.0%
ATTCTCGCTTAGGGTGCGAG+AGG - chr3_2:71349363-71349382 None:intergenic 55.0%
GAAGGGGAAAACCCTTGGAG+TGG - chr3_2:71350748-71350767 None:intergenic 55.0%
!! GGTGGTGGTGGTGGTGATGT+TGG - chr3_2:71348935-71348954 None:intergenic 60.0%
!! CCAAGACATGGTGGTGGTGG+TGG - chr3_2:71348944-71348963 None:intergenic 60.0%
CCACCACCACCACCATGTCT+TGG + chr3_2:71348941-71348960 Msa0422230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 71348695 71351826 71348695 ID=Msa0422230;Name=Msa0422230
chr3_2 mRNA 71348695 71351826 71348695 ID=Msa0422230-mRNA-1;Parent=Msa0422230;Name=Msa0422230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=121|1|1|1|0.75|0.8|5|503|229
chr3_2 exon 71348695 71349226 71348695 ID=Msa0422230-mRNA-1:exon:17381;Parent=Msa0422230-mRNA-1
chr3_2 exon 71350263 71350349 71350263 ID=Msa0422230-mRNA-1:exon:17382;Parent=Msa0422230-mRNA-1
chr3_2 exon 71350453 71350500 71350453 ID=Msa0422230-mRNA-1:exon:17383;Parent=Msa0422230-mRNA-1
chr3_2 exon 71351090 71351269 71351090 ID=Msa0422230-mRNA-1:exon:17384;Parent=Msa0422230-mRNA-1
chr3_2 exon 71351360 71351826 71351360 ID=Msa0422230-mRNA-1:exon:17385;Parent=Msa0422230-mRNA-1
chr3_2 five_prime_UTR 71348695 71348815 71348695 ID=Msa0422230-mRNA-1:five_prime_utr;Parent=Msa0422230-mRNA-1
chr3_2 CDS 71348816 71349226 71348816 ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2 CDS 71350263 71350349 71350263 ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2 CDS 71350453 71350500 71350453 ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2 CDS 71351090 71351233 71351090 ID=Msa0422230-mRNA-1:cds;Parent=Msa0422230-mRNA-1
chr3_2 three_prime_UTR 71351234 71351269 71351234 ID=Msa0422230-mRNA-1:three_prime_utr;Parent=Msa0422230-mRNA-1
chr3_2 three_prime_UTR 71351360 71351826 71351360 ID=Msa0422230-mRNA-1:three_prime_utr;Parent=Msa0422230-mRNA-1
Gene Sequence

>Msa0422230

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCTCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0422230

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*