Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078990 | XP_003590891.2 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 4.29e-132 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078990 | sp|Q9ZVQ6|P2B10_ARATH | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.58e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078990 | G7I5M1 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 2.05e-132 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008600 | Msa0078990 | 0.809538 | 1.801298e-50 | -8.615850e-47 |
| Msa0011060 | Msa0078990 | -0.810208 | 1.292459e-50 | -8.615850e-47 |
| Msa0011100 | Msa0078990 | -0.811887 | 5.590611e-51 | -8.615850e-47 |
| Msa0030760 | Msa0078990 | -0.800646 | 1.307205e-48 | -8.615850e-47 |
| Msa0031580 | Msa0078990 | 0.958284 | 3.447311e-116 | -8.615850e-47 |
| Msa0034050 | Msa0078990 | -0.808793 | 2.601392e-50 | -8.615850e-47 |
| Msa0034100 | Msa0078990 | -0.820074 | 8.313321e-53 | -8.615850e-47 |
| Msa0036550 | Msa0078990 | 0.822949 | 1.801423e-53 | -8.615850e-47 |
| Msa0046430 | Msa0078990 | 0.809782 | 1.595880e-50 | -8.615850e-47 |
| Msa0048410 | Msa0078990 | -0.806943 | 6.434829e-50 | -8.615850e-47 |
| Msa0057000 | Msa0078990 | 0.809698 | 1.664199e-50 | -8.615850e-47 |
| Msa0065520 | Msa0078990 | -0.801794 | 7.609446e-49 | -8.615850e-47 |
| Msa0078160 | Msa0078990 | -0.807711 | 4.422125e-50 | -8.615850e-47 |
| Msa0078990 | Msa0081290 | -0.801118 | 1.046838e-48 | -8.615850e-47 |
| Msa0078990 | Msa0081790 | -0.804516 | 2.080487e-49 | -8.615850e-47 |
| Msa0078990 | Msa0127350 | -0.812737 | 3.647051e-51 | -8.615850e-47 |
| Msa0078990 | Msa0128110 | -0.814212 | 1.728416e-51 | -8.615850e-47 |
| Msa0078990 | Msa0136180 | -0.806076 | 9.806009e-50 | -8.615850e-47 |
| Msa0078990 | Msa0138340 | -0.805316 | 1.415926e-49 | -8.615850e-47 |
| Msa0078990 | Msa0139850 | 0.807248 | 5.546268e-50 | -8.615850e-47 |
| Msa0078990 | Msa0147960 | -0.803733 | 3.027731e-49 | -8.615850e-47 |
| Msa0078990 | Msa0165820 | -0.812693 | 3.727835e-51 | -8.615850e-47 |
| Msa0078990 | Msa0171510 | 0.942847 | 3.475216e-102 | -8.615850e-47 |
| Msa0078990 | Msa0175060 | 0.803114 | 4.068534e-49 | -8.615850e-47 |
| Msa0078990 | Msa0176600 | 0.804554 | 2.042781e-49 | -8.615850e-47 |
| Msa0078990 | Msa0194750 | -0.803425 | 3.507694e-49 | -8.615850e-47 |
| Msa0078990 | Msa0197920 | 0.812561 | 3.984223e-51 | -8.615850e-47 |
| Msa0078990 | Msa0208710 | -0.810443 | 1.149895e-50 | -8.615850e-47 |
| Msa0078990 | Msa0211460 | 0.822696 | 2.063226e-53 | -8.615850e-47 |
| Msa0078990 | Msa0225070 | -0.818637 | 1.766701e-52 | -8.615850e-47 |
| Msa0078990 | Msa0227970 | -0.802196 | 6.292244e-49 | -8.615850e-47 |
| Msa0078990 | Msa0229350 | -0.800691 | 1.279932e-48 | -8.615850e-47 |
| Msa0078990 | Msa0236690 | -0.806800 | 6.897527e-50 | -8.615850e-47 |
| Msa0078990 | Msa0266140 | -0.803579 | 3.259485e-49 | -8.615850e-47 |
| Msa0078990 | Msa0304060 | -0.804524 | 2.072947e-49 | -8.615850e-47 |
| Msa0078990 | Msa0317300 | 0.800111 | 1.680063e-48 | -8.615850e-47 |
| Msa0078990 | Msa0328870 | 0.804464 | 2.133383e-49 | -8.615850e-47 |
| Msa0078990 | Msa0343230 | -0.813382 | 2.633796e-51 | -8.615850e-47 |
| Msa0078990 | Msa0358470 | 0.810751 | 9.864490e-51 | -8.615850e-47 |
| Msa0078990 | Msa0364030 | -0.810622 | 1.051679e-50 | -8.615850e-47 |
| Msa0078990 | Msa0375550 | 0.811772 | 5.924019e-51 | -8.615850e-47 |
| Msa0078990 | Msa0378530 | -0.800078 | 1.706032e-48 | -8.615850e-47 |
| Msa0078990 | Msa0403740 | -0.809532 | 1.805857e-50 | -8.615850e-47 |
| Msa0078990 | Msa0422230 | -0.813194 | 2.895200e-51 | -8.615850e-47 |
| Msa0078990 | Msa0449500 | 0.800626 | 1.319779e-48 | -8.615850e-47 |
| Msa0078990 | Msa0456450 | -0.817543 | 3.123006e-52 | -8.615850e-47 |
| Msa0078990 | Msa0497680 | 0.803675 | 3.112783e-49 | -8.615850e-47 |
| Msa0078990 | Msa0515930 | 0.801682 | 8.023618e-49 | -8.615850e-47 |
| Msa0078990 | Msa0527210 | -0.803023 | 4.248422e-49 | -8.615850e-47 |
| Msa0078990 | Msa0527560 | 0.812355 | 4.419999e-51 | -8.615850e-47 |
| Msa0078990 | Msa0538050 | -0.813114 | 3.015614e-51 | -8.615850e-47 |
| Msa0078990 | Msa0538520 | 0.806631 | 7.489141e-50 | -8.615850e-47 |
| Msa0078990 | Msa0548420 | 0.814161 | 1.774063e-51 | -8.615850e-47 |
| Msa0078990 | Msa0568300 | -0.815272 | 1.006425e-51 | -8.615850e-47 |
| Msa0078990 | Msa0576500 | -0.800866 | 1.178996e-48 | -8.615850e-47 |
| Msa0078990 | Msa0582270 | -0.812458 | 4.196921e-51 | -8.615850e-47 |
| Msa0078990 | Msa0585720 | -0.806291 | 8.835914e-50 | -8.615850e-47 |
| Msa0078990 | Msa0610300 | -0.803198 | 3.909541e-49 | -8.615850e-47 |
| Msa0078990 | Msa0614020 | -0.809743 | 1.626850e-50 | -8.615850e-47 |
| Msa0078990 | Msa0625900 | -0.812740 | 3.641265e-51 | -8.615850e-47 |
| Msa0078990 | Msa0634900 | -0.810885 | 9.226433e-51 | -8.615850e-47 |
| Msa0078990 | Msa0663580 | -0.803003 | 4.288107e-49 | -8.615850e-47 |
| Msa0078990 | Msa0663690 | -0.809438 | 1.892316e-50 | -8.615850e-47 |
| Msa0078990 | Msa0693050 | -0.807585 | 4.703348e-50 | -8.615850e-47 |
| Msa0078990 | Msa0696600 | -0.801288 | 9.662118e-49 | -8.615850e-47 |
| Msa0078990 | Msa0704790 | -0.811328 | 7.395940e-51 | -8.615850e-47 |
| Msa0078990 | Msa0707860 | -0.801940 | 7.103304e-49 | -8.615850e-47 |
| Msa0078990 | Msa0707880 | -0.802943 | 4.414044e-49 | -8.615850e-47 |
| Msa0078990 | Msa0733240 | -0.820476 | 6.721949e-53 | -8.615850e-47 |
| Msa0078990 | Msa0774360 | -0.810467 | 1.135932e-50 | -8.615850e-47 |
| Msa0078990 | Msa0795910 | -0.800456 | 1.429224e-48 | -8.615850e-47 |
| Msa0078990 | Msa0812020 | -0.818059 | 2.387918e-52 | -8.615850e-47 |
| Msa0078990 | Msa0847140 | 0.804395 | 2.205136e-49 | -8.615850e-47 |
| Msa0078990 | Msa0852090 | -0.803786 | 2.952082e-49 | -8.615850e-47 |
| Msa0078990 | Msa0921860 | 0.803495 | 3.392546e-49 | -8.615850e-47 |
| Msa0078990 | Msa0967900 | -0.824138 | 9.495143e-54 | -8.615850e-47 |
| Msa0078990 | Msa1047300 | 0.806523 | 7.894947e-50 | -8.615850e-47 |
| Msa0078990 | Msa1047340 | 0.806930 | 6.474442e-50 | -8.615850e-47 |
| Msa0078990 | Msa1061780 | 0.803524 | 3.345759e-49 | -8.615850e-47 |
| Msa0078990 | Msa1070630 | -0.801653 | 8.135187e-49 | -8.615850e-47 |
| Msa0078990 | Msa1093190 | -0.811557 | 6.595670e-51 | -8.615850e-47 |
| Msa0078990 | Msa1126980 | -0.804597 | 2.001441e-49 | -8.615850e-47 |
| Msa0078990 | Msa1132880 | -0.803980 | 2.690311e-49 | -8.615850e-47 |
| Msa0078990 | Msa1136770 | -0.802165 | 6.384494e-49 | -8.615850e-47 |
| Msa0078990 | Msa1143060 | -0.812731 | 3.657489e-51 | -8.615850e-47 |
| Msa0078990 | Msa1184680 | 0.805062 | 1.599958e-49 | -8.615850e-47 |
| Msa0078990 | Msa1251500 | 0.805369 | 1.380308e-49 | -8.615850e-47 |
| Msa0078990 | Msa1286470 | -0.804946 | 1.692167e-49 | -8.615850e-47 |
| Msa0078990 | Msa1291070 | -0.820681 | 6.032155e-53 | -8.615850e-47 |
| Msa0078990 | Msa1295210 | -0.818624 | 1.778715e-52 | -8.615850e-47 |
| Msa0078990 | Msa1298480 | -0.800404 | 1.464542e-48 | -8.615850e-47 |
| Msa0078990 | Msa1306220 | 0.811464 | 6.910909e-51 | -8.615850e-47 |
| Msa0078990 | Msa1323260 | -0.808073 | 3.704470e-50 | -8.615850e-47 |
| Msa0078990 | Msa1342360 | -0.818120 | 2.313992e-52 | -8.615850e-47 |
| Msa0078990 | Msa1343450 | -0.805423 | 1.344599e-49 | -8.615850e-47 |
| Msa0078990 | Msa1346340 | -0.803980 | 2.690340e-49 | -8.615850e-47 |
| Msa0078990 | Msa1361580 | -0.821133 | 4.746523e-53 | -8.615850e-47 |
| Msa0078990 | Msa1371540 | -0.807170 | 5.762134e-50 | -8.615850e-47 |
| Msa0078990 | Msa1375980 | -0.810018 | 1.420261e-50 | -8.615850e-47 |
| Msa0078990 | Msa1395380 | -0.806119 | 9.601577e-50 | -8.615850e-47 |
| Msa0078990 | Msa1395720 | 0.828608 | 8.178927e-55 | -8.615850e-47 |
| Msa0078990 | Msa1400240 | -0.813546 | 2.423421e-51 | -8.615850e-47 |
| Msa0078990 | Msa1400290 | -0.804968 | 1.674298e-49 | -8.615850e-47 |
| Msa0078990 | Msa1403820 | -0.802992 | 4.311318e-49 | -8.615850e-47 |
| Msa0078990 | Msa1412740 | -0.804261 | 2.351472e-49 | -8.615850e-47 |
| Msa0078990 | Msa1425400 | 0.965792 | 4.566930e-125 | -8.615850e-47 |
| Msa0078990 | Msa1430250 | 0.815719 | 8.005233e-52 | -8.615850e-47 |
| Msa0078990 | Msa1452800 | -0.810779 | 9.726602e-51 | -8.615850e-47 |
| Msa0078990 | Msa1454300 | -0.807305 | 5.393651e-50 | -8.615850e-47 |
| Msa0078990 | Msa1462210 | -0.809324 | 2.001991e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078990 | MtrunA17_Chr1g0189751 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 3.95e-136 | 384 |
| Msa0078990 | MtrunA17_Chr1g0189721 | 72.659 | 267 | 41 | 2 | 1 | 237 | 1 | 265 | 3.46e-134 | 378 |
| Msa0078990 | MtrunA17_Chr1g0189611 | 64.444 | 270 | 58 | 4 | 1 | 237 | 1 | 265 | 2.19e-118 | 338 |
| Msa0078990 | MtrunA17_Chr1g0189671 | 58.123 | 277 | 77 | 4 | 1 | 240 | 1 | 275 | 1.02e-106 | 309 |
| Msa0078990 | MtrunA17_Chr1g0189821 | 60.073 | 273 | 72 | 4 | 1 | 240 | 1 | 269 | 9.68e-106 | 306 |
| Msa0078990 | MtrunA17_Chr1g0189621 | 60.223 | 269 | 70 | 5 | 1 | 237 | 1 | 264 | 1.25e-105 | 306 |
| Msa0078990 | MtrunA17_Chr1g0203281 | 58.993 | 278 | 73 | 4 | 1 | 240 | 1 | 275 | 5.79e-105 | 305 |
| Msa0078990 | MtrunA17_Chr1g0189641 | 53.791 | 277 | 90 | 3 | 1 | 240 | 1 | 276 | 3.26e-95 | 280 |
| Msa0078990 | MtrunA17_Chr1g0190071 | 53.497 | 286 | 85 | 5 | 1 | 240 | 1 | 284 | 1.33e-91 | 271 |
| Msa0078990 | MtrunA17_Chr1g0203331 | 58.367 | 245 | 60 | 3 | 15 | 218 | 1 | 244 | 7.97e-89 | 262 |
| Msa0078990 | MtrunA17_Chr3g0097191 | 54.815 | 270 | 80 | 7 | 4 | 240 | 10 | 270 | 1.41e-86 | 258 |
| Msa0078990 | MtrunA17_Chr1g0189661 | 52.128 | 282 | 92 | 6 | 1 | 240 | 1 | 281 | 1.43e-85 | 256 |
| Msa0078990 | MtrunA17_Chr1g0157451 | 49.129 | 287 | 98 | 6 | 1 | 240 | 1 | 286 | 2.22e-82 | 248 |
| Msa0078990 | MtrunA17_Chr3g0078331 | 48.525 | 305 | 86 | 6 | 4 | 240 | 17 | 318 | 4.18e-80 | 243 |
| Msa0078990 | MtrunA17_Chr1g0189711 | 50.181 | 277 | 96 | 7 | 1 | 237 | 1 | 275 | 7.59e-78 | 236 |
| Msa0078990 | MtrunA17_Chr1g0189781 | 48.519 | 270 | 99 | 5 | 4 | 237 | 8 | 273 | 9.87e-78 | 235 |
| Msa0078990 | MtrunA17_Chr1g0189541 | 62.304 | 191 | 62 | 4 | 47 | 237 | 4 | 184 | 1.99e-76 | 229 |
| Msa0078990 | MtrunA17_Chr7g0260801 | 50.000 | 270 | 94 | 8 | 1 | 237 | 13 | 274 | 8.24e-74 | 225 |
| Msa0078990 | MtrunA17_Chr3g0095261 | 49.301 | 286 | 87 | 10 | 4 | 240 | 10 | 286 | 6.48e-72 | 221 |
| Msa0078990 | MtrunA17_Chr1g0189591 | 43.624 | 298 | 102 | 7 | 3 | 237 | 12 | 306 | 4.36e-70 | 217 |
| Msa0078990 | MtrunA17_Chr1g0189701 | 47.260 | 292 | 93 | 9 | 1 | 237 | 32 | 317 | 4.53e-67 | 209 |
| Msa0078990 | MtrunA17_Chr2g0317291 | 57.143 | 161 | 67 | 1 | 74 | 234 | 54 | 212 | 4.49e-51 | 166 |
| Msa0078990 | MtrunA17_Chr1g0188311 | 61.194 | 134 | 36 | 1 | 98 | 215 | 22 | 155 | 1.11e-49 | 160 |
| Msa0078990 | MtrunA17_Chr1g0189651 | 56.707 | 164 | 58 | 4 | 74 | 237 | 29 | 179 | 1.05e-48 | 158 |
| Msa0078990 | MtrunA17_Chr7g0272091 | 36.972 | 284 | 128 | 8 | 2 | 238 | 5 | 284 | 3.24e-48 | 160 |
| Msa0078990 | MtrunA17_Chr1g0189571 | 43.128 | 211 | 85 | 6 | 56 | 237 | 1 | 205 | 1.23e-43 | 146 |
| Msa0078990 | MtrunA17_Chr1g0192371 | 34.643 | 280 | 135 | 9 | 2 | 237 | 6 | 281 | 6.62e-42 | 144 |
| Msa0078990 | MtrunA17_Chr7g0272101 | 33.969 | 262 | 134 | 7 | 7 | 237 | 4 | 257 | 8.23e-39 | 135 |
| Msa0078990 | MtrunA17_Chr1g0189771 | 45.399 | 163 | 55 | 2 | 4 | 132 | 12 | 174 | 7.56e-38 | 130 |
| Msa0078990 | MtrunA17_Chr3g0102081 | 59.091 | 110 | 43 | 1 | 90 | 199 | 16 | 123 | 2.23e-36 | 125 |
| Msa0078990 | MtrunA17_Chr4g0010881 | 31.179 | 263 | 120 | 8 | 7 | 237 | 4 | 237 | 2.13e-32 | 118 |
| Msa0078990 | MtrunA17_Chr1g0189631 | 55.963 | 109 | 32 | 2 | 115 | 209 | 1 | 107 | 5.10e-32 | 113 |
| Msa0078990 | MtrunA17_Chr1g0189531 | 72.000 | 75 | 21 | 0 | 1 | 75 | 64 | 138 | 4.65e-29 | 109 |
| Msa0078990 | MtrunA17_Chr3g0143881 | 44.715 | 123 | 52 | 2 | 115 | 237 | 1 | 107 | 3.45e-27 | 100 |
| Msa0078990 | MtrunA17_Chr2g0300961 | 61.538 | 78 | 28 | 2 | 1 | 76 | 1 | 78 | 1.92e-22 | 89.4 |
| Msa0078990 | MtrunA17_Chr7g0260811 | 41.892 | 148 | 52 | 5 | 38 | 155 | 19 | 162 | 1.58e-18 | 80.1 |
| Msa0078990 | MtrunA17_Chr1g0189761 | 49.462 | 93 | 44 | 2 | 145 | 237 | 5 | 94 | 3.54e-16 | 71.6 |
| Msa0078990 | MtrunA17_Chr4g0043591 | 27.811 | 169 | 99 | 5 | 71 | 237 | 143 | 290 | 2.30e-15 | 73.6 |
| Msa0078990 | MtrunA17_Chr5g0397981 | 29.586 | 169 | 86 | 5 | 2 | 139 | 33 | 199 | 8.62e-14 | 69.3 |
| Msa0078990 | MtrunA17_Chr1g0203751 | 30.872 | 149 | 72 | 2 | 2 | 119 | 26 | 174 | 8.41e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0078990 | AT2G02360.1 | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.62e-59 | 189 |
| Msa0078990 | AT2G02340.1 | 36.296 | 270 | 137 | 4 | 1 | 236 | 33 | 301 | 1.37e-53 | 175 |
| Msa0078990 | AT1G80110.1 | 38.636 | 264 | 122 | 7 | 4 | 236 | 1 | 255 | 5.76e-50 | 164 |
| Msa0078990 | AT2G02240.1 | 37.023 | 262 | 124 | 7 | 7 | 236 | 64 | 316 | 2.88e-48 | 162 |
| Msa0078990 | AT2G02250.1 | 36.090 | 266 | 128 | 7 | 4 | 236 | 47 | 303 | 4.18e-47 | 158 |
| Msa0078990 | AT1G09155.1 | 37.500 | 280 | 124 | 8 | 7 | 237 | 3 | 280 | 7.62e-47 | 157 |
| Msa0078990 | AT2G02350.2 | 35.206 | 267 | 131 | 8 | 4 | 236 | 24 | 282 | 1.90e-42 | 146 |
| Msa0078990 | AT1G56250.1 | 36.786 | 280 | 126 | 8 | 7 | 237 | 4 | 281 | 5.09e-42 | 144 |
| Msa0078990 | AT1G56240.1 | 36.201 | 279 | 127 | 8 | 7 | 236 | 4 | 280 | 1.34e-41 | 143 |
| Msa0078990 | AT2G02230.1 | 30.164 | 305 | 139 | 6 | 7 | 240 | 35 | 336 | 1.23e-40 | 142 |
| Msa0078990 | AT2G02320.1 | 33.962 | 265 | 133 | 9 | 6 | 236 | 42 | 298 | 8.75e-38 | 134 |
| Msa0078990 | AT2G02310.1 | 29.104 | 268 | 148 | 7 | 4 | 237 | 45 | 304 | 1.61e-32 | 120 |
| Msa0078990 | AT2G02300.1 | 31.734 | 271 | 125 | 7 | 4 | 237 | 34 | 281 | 5.39e-32 | 118 |
| Msa0078990 | AT2G02350.1 | 36.913 | 149 | 86 | 4 | 91 | 236 | 22 | 165 | 5.39e-26 | 100 |
| Msa0078990 | AT5G24560.1 | 29.915 | 234 | 116 | 7 | 6 | 237 | 5 | 192 | 4.48e-25 | 98.2 |
| Msa0078990 | AT3G53000.1 | 25.632 | 277 | 149 | 11 | 4 | 236 | 21 | 284 | 4.55e-16 | 76.3 |
| Msa0078990 | AT1G12710.1 | 32.639 | 144 | 63 | 3 | 6 | 117 | 30 | 171 | 1.29e-13 | 69.3 |
| Msa0078990 | AT1G63090.1 | 29.268 | 164 | 80 | 4 | 4 | 135 | 26 | 185 | 5.84e-13 | 67.4 |
| Msa0078990 | AT3G61060.2 | 26.994 | 163 | 83 | 4 | 6 | 135 | 27 | 186 | 8.10e-13 | 67.0 |
| Msa0078990 | AT3G61060.1 | 28.834 | 163 | 79 | 5 | 6 | 135 | 27 | 185 | 1.01e-12 | 66.6 |
| Msa0078990 | AT4G19850.3 | 26.816 | 179 | 101 | 7 | 68 | 237 | 61 | 218 | 8.98e-12 | 63.2 |
| Msa0078990 | AT4G19850.1 | 26.816 | 179 | 101 | 7 | 68 | 237 | 19 | 176 | 9.94e-12 | 62.0 |
| Msa0078990 | AT1G33920.1 | 24.022 | 179 | 109 | 4 | 65 | 237 | 7 | 164 | 1.80e-11 | 61.2 |
| Msa0078990 | AT4G19840.1 | 28.824 | 170 | 98 | 8 | 71 | 237 | 96 | 245 | 3.06e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATATTGAGTATT+TGG | 0.137691 | 1_2:+56672433 | None:intergenic |
| CTTATTGTTGTTCAGTATAC+TGG | 0.163118 | 1_2:-56671942 | Msa0078990:three_prime_UTR |
| TTCAAAATGATTGATGCTTA+TGG | 0.231867 | 1_2:-56672403 | Msa0078990:CDS |
| CTAGATCTCTTGCCATTGTT+TGG | 0.245415 | 1_2:-56674164 | Msa0078990:intron |
| TAGATCTCTTGCCATTGTTT+GGG | 0.268063 | 1_2:-56674163 | Msa0078990:CDS |
| CTGAACTATGCAAGGGGTCT+TGG | 0.296858 | 1_2:-56672066 | Msa0078990:three_prime_UTR |
| TCAACAAGCTTAGCGACTTC+AGG | 0.333696 | 1_2:+56672505 | None:intergenic |
| AAGCTGCATATTGAGTATTT+GGG | 0.334659 | 1_2:+56672434 | None:intergenic |
| TGCCAACATTCCTACCAAAA+AGG | 0.349990 | 1_2:-56675154 | Msa0078990:CDS |
| TGATTTCTATGCCTGATTCC+AGG | 0.379925 | 1_2:-56674116 | Msa0078990:intron |
| TGAGGATTACCTTCCACATT+TGG | 0.380026 | 1_2:+56672304 | None:intergenic |
| ATATTAGTATGTTGAAAAGT+TGG | 0.382553 | 1_2:+56672013 | None:intergenic |
| GAGAGTCTGCCGGCGTCAAC+TGG | 0.384737 | 1_2:+56675279 | None:intergenic |
| CCTCCAACTCCGACGCTGTA+TGG | 0.389215 | 1_2:-56675230 | Msa0078990:CDS |
| TGAACTATGCAAGGGGTCTT+GGG | 0.402498 | 1_2:-56672065 | Msa0078990:three_prime_UTR |
| TTAAGAGCTAACCTGGAATC+AGG | 0.410946 | 1_2:+56674105 | None:intergenic |
| TGGATATCTTTGTTGTGTTG+TGG | 0.414878 | 1_2:-56671917 | Msa0078990:three_prime_UTR |
| GACAGAGATTCAGGATTTGC+CGG | 0.423087 | 1_2:-56675337 | Msa0078990:CDS |
| TAGTACTAAAATTGTCTGTT+TGG | 0.434481 | 1_2:-56672329 | Msa0078990:CDS |
| CTAAGCTTGTTGATGTGTGT+TGG | 0.438622 | 1_2:-56672495 | Msa0078990:CDS |
| TGGAGTTGTACGAGAGACTA+TGG | 0.443442 | 1_2:+56675299 | None:intergenic |
| ATCACAATATATTATATAGT+TGG | 0.445877 | 1_2:+56671864 | None:intergenic |
| GTGTGTTGGCTTGAAATTCA+TGG | 0.446205 | 1_2:-56672481 | Msa0078990:CDS |
| ATGCAAGGGGTCTTGGGTCG+TGG | 0.466084 | 1_2:-56672059 | Msa0078990:three_prime_UTR |
| GTTGGTTAATTGTTATACTT+AGG | 0.467370 | 1_2:+56672094 | None:intergenic |
| CCATACAGCGTCGGAGTTGG+AGG | 0.469088 | 1_2:+56675230 | None:intergenic |
| TCATCTGTATCAGATTCATC+TGG | 0.472901 | 1_2:+56672173 | None:intergenic |
| CAGCCGCACAACACAGTAGT+AGG | 0.476209 | 1_2:-56672283 | Msa0078990:CDS |
| ATTCCATACAGCGTCGGAGT+TGG | 0.478886 | 1_2:+56675227 | None:intergenic |
| CAACAAGCTTAGCGACTTCA+GGG | 0.483357 | 1_2:+56672506 | None:intergenic |
| AAGAGAGGTCTCGTTGTTGA+AGG | 0.488523 | 1_2:-56672130 | Msa0078990:CDS |
| ATGGTGGCAATGCATCCTTC+CGG | 0.489320 | 1_2:+56675318 | None:intergenic |
| TGTTCTGCGGATTTATCAGT+TGG | 0.493868 | 1_2:-56672370 | Msa0078990:CDS |
| CATATTGAGTATTTGGGGAC+AGG | 0.495017 | 1_2:+56672440 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.496484 | 1_2:-56672233 | Msa0078990:CDS |
| TTGTTGAAGGAATTGAAGTC+AGG | 0.499615 | 1_2:-56672117 | Msa0078990:CDS |
| TGGAACAATCAACAGACATC+AGG | 0.499719 | 1_2:+56671884 | None:intergenic |
| CGTCCTACTGTGAGAAGCGA+TGG | 0.500006 | 1_2:-56672253 | Msa0078990:CDS |
| ACTACTGTGTTGTGCGGCTG+AGG | 0.503355 | 1_2:+56672286 | None:intergenic |
| ATGGGTGAGTTCTTCAATCC+AGG | 0.510010 | 1_2:-56672214 | Msa0078990:CDS |
| GTAGGAATGTTGGCAAGGGA+AGG | 0.521816 | 1_2:+56675162 | None:intergenic |
| TTATTGTTGTTCAGTATACT+GGG | 0.530310 | 1_2:-56671941 | Msa0078990:three_prime_UTR |
| GGGGTGATGATAGACGCTAT+TGG | 0.532370 | 1_2:-56674143 | Msa0078990:CDS |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.533715 | 1_2:-56672232 | Msa0078990:CDS |
| AACATTCACTGAACTATGCA+AGG | 0.541083 | 1_2:-56672074 | Msa0078990:three_prime_UTR |
| TGAGTGGTGGTCGTGGTGGT+TGG | 0.545093 | 1_2:-56672153 | Msa0078990:CDS |
| TTGCATAGTTCAGTGAATGT+TGG | 0.553784 | 1_2:+56672076 | None:intergenic |
| TGTTGTTCAGTATACTGGGA+TGG | 0.556183 | 1_2:-56671937 | Msa0078990:three_prime_UTR |
| CGTCGGAGTTGGAGGCTGAT+CGG | 0.556747 | 1_2:+56675238 | None:intergenic |
| GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | 1_2:-56675333 | Msa0078990:CDS |
| AGATCTCTTGCCATTGTTTG+GGG | 0.561132 | 1_2:-56674162 | Msa0078990:CDS |
| GGTCGTGGTGGTTGGAAGAG+AGG | 0.562312 | 1_2:-56672145 | Msa0078990:CDS |
| GATTTATCAGTTGGTGTCGA+AGG | 0.564414 | 1_2:-56672361 | Msa0078990:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.573841 | 1_2:-56672245 | Msa0078990:CDS |
| GGAAACGACGGAGAGTCTGC+CGG | 0.576478 | 1_2:+56675269 | None:intergenic |
| ATGATAGATGAGATGTCAGA+AGG | 0.589136 | 1_2:+56675195 | None:intergenic |
| GGAGGCTGATCGGAAAGTGT+TGG | 0.593620 | 1_2:+56675248 | None:intergenic |
| TTATCAGTTGGTGTCGAAGG+TGG | 0.596520 | 1_2:-56672358 | Msa0078990:CDS |
| AGCTGCATATTGAGTATTTG+GGG | 0.601395 | 1_2:+56672435 | None:intergenic |
| ACATTCACTGAACTATGCAA+GGG | 0.606445 | 1_2:-56672073 | Msa0078990:three_prime_UTR |
| TTTGGTAGGAATGTTGGCAA+GGG | 0.607331 | 1_2:+56675158 | None:intergenic |
| ATACAGATGAGTGGTGGTCG+TGG | 0.619250 | 1_2:-56672160 | Msa0078990:CDS |
| TGGATTTCAGAACTGTTCTG+CGG | 0.620211 | 1_2:-56672383 | Msa0078990:CDS |
| TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1_2:-56672317 | Msa0078990:CDS |
| TCTATCATCACCCCAAACAA+TGG | 0.627087 | 1_2:+56674152 | None:intergenic |
| AATCAACAGACATCAGGAAG+AGG | 0.628326 | 1_2:+56671890 | None:intergenic |
| AGTATTTGGGGACAGGACGA+TGG | 0.644084 | 1_2:+56672447 | None:intergenic |
| GTCCTACTGTGAGAAGCGAT+GGG | 0.647735 | 1_2:-56672252 | Msa0078990:CDS |
| CACCCATCGCTTCTCACAGT+AGG | 0.650219 | 1_2:+56672250 | None:intergenic |
| CAGATGAGTGGTGGTCGTGG+TGG | 0.655384 | 1_2:-56672157 | Msa0078990:CDS |
| TCGGAAAGTGTTGGAAACGA+CGG | 0.666718 | 1_2:+56675257 | None:intergenic |
| CATTCACTGAACTATGCAAG+GGG | 0.671001 | 1_2:-56672072 | Msa0078990:three_prime_UTR |
| AATCCTACTACTGTGTTGTG+CGG | 0.681890 | 1_2:+56672280 | None:intergenic |
| AAAACGATTCCATACAGCGT+CGG | 0.682477 | 1_2:+56675221 | None:intergenic |
| TGTTTGGATCCAAATGTGGA+AGG | 0.696224 | 1_2:-56672313 | Msa0078990:CDS |
| CTACTGTGAGAAGCGATGGG+TGG | 0.696678 | 1_2:-56672249 | Msa0078990:CDS |
| CGTACAACTCCAGTTGACGC+CGG | 0.721519 | 1_2:-56675288 | Msa0078990:CDS |
| ATGAATCTGATACAGATGAG+TGG | 0.742711 | 1_2:-56672169 | Msa0078990:CDS |
| AATCTGATACAGATGAGTGG+TGG | 0.745247 | 1_2:-56672166 | Msa0078990:CDS |
| AGTTGTACGAGAGACTATGG+TGG | 0.755358 | 1_2:+56675302 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTGAGAAAAATAAAAA+TGG | + | chr1_2:56673516-56673535 | None:intergenic | 10.0% |
| !!! | TGACAAATATATTTTTAAAG+GGG | + | chr1_2:56672830-56672849 | None:intergenic | 15.0% |
| !!! | GTGACAAATATATTTTTAAA+GGG | + | chr1_2:56672831-56672850 | None:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | - | chr1_2:56673447-56673466 | Msa0078990:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | + | chr1_2:56673556-56673575 | None:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | + | chr1_2:56673581-56673600 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAACTTGAACAA+AGG | + | chr1_2:56674419-56674438 | None:intergenic | 15.0% |
| !! | ATCACAATATATTATATAGT+TGG | + | chr1_2:56675309-56675328 | None:intergenic | 15.0% |
| !!! | GATTTTTTAAGATGTTTAGT+TGG | - | chr1_2:56672127-56672146 | Msa0078990:CDS | 20.0% |
| !! | AACACCAAATATGAAATATT+TGG | - | chr1_2:56672154-56672173 | Msa0078990:CDS | 20.0% |
| !! | TCAACCAAATATTTCATATT+TGG | + | chr1_2:56672161-56672180 | None:intergenic | 20.0% |
| !! | TCAGTTTGTAATAATAACAA+TGG | - | chr1_2:56672490-56672509 | Msa0078990:CDS | 20.0% |
| !! | CAGTTTGTAATAATAACAAT+GGG | - | chr1_2:56672491-56672510 | Msa0078990:CDS | 20.0% |
| !!! | GACAAATATATTTTTAAAGG+GGG | + | chr1_2:56672829-56672848 | None:intergenic | 20.0% |
| !!! | GGTGACAAATATATTTTTAA+AGG | + | chr1_2:56672832-56672851 | None:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | - | chr1_2:56673112-56673131 | Msa0078990:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | + | chr1_2:56673385-56673404 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | + | chr1_2:56673386-56673405 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | - | chr1_2:56673448-56673467 | Msa0078990:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | chr1_2:56673674-56673693 | None:intergenic | 20.0% |
| !! | CATTCAAAAATAAATAGGTT+CGG | + | chr1_2:56674259-56674278 | None:intergenic | 20.0% |
| !! | TGATGCATTCAAAAATAAAT+AGG | + | chr1_2:56674264-56674283 | None:intergenic | 20.0% |
| !! | GGTCTGATATTTAAAAAATT+TGG | + | chr1_2:56674292-56674311 | None:intergenic | 20.0% |
| !! | TTGTAAAGTAACAAACAAAT+TGG | + | chr1_2:56674313-56674332 | None:intergenic | 20.0% |
| !! | ATATTAGTATGTTGAAAAGT+TGG | + | chr1_2:56675160-56675179 | None:intergenic | 20.0% |
| !!! | TATTTTACAAAGAAAGAGAT+TGG | + | chr1_2:56675190-56675209 | None:intergenic | 20.0% |
| ! | AAATAATTCGAAGTTGCAAT+TGG | - | chr1_2:56672302-56672321 | Msa0078990:CDS | 25.0% |
| ! | TTGTAATAATAACAATGGGT+TGG | - | chr1_2:56672495-56672514 | Msa0078990:CDS | 25.0% |
| ! | TTAAATTGCAGGAATGTAAA+GGG | + | chr1_2:56672605-56672624 | None:intergenic | 25.0% |
| ! | ATTAAATTGCAGGAATGTAA+AGG | + | chr1_2:56672606-56672625 | None:intergenic | 25.0% |
| ! | GAACATTGATATTAAATTGC+AGG | + | chr1_2:56672616-56672635 | None:intergenic | 25.0% |
| ! | AGATGAAAAGGAAAAGAAAA+AGG | + | chr1_2:56672651-56672670 | None:intergenic | 25.0% |
| !!! | AACTTGTTATTACAAGATGT+TGG | - | chr1_2:56672733-56672752 | Msa0078990:intron | 25.0% |
| ! | GAGTTTACATTACCAAAAAT+CGG | - | chr1_2:56672905-56672924 | Msa0078990:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr1_2:56673622-56673641 | Msa0078990:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | + | chr1_2:56673626-56673645 | None:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | - | chr1_2:56673723-56673742 | Msa0078990:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | + | chr1_2:56673800-56673819 | None:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | - | chr1_2:56673799-56673818 | Msa0078990:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | + | chr1_2:56673812-56673831 | None:intergenic | 25.0% |
| !!! | TTTTTTGATCCTAATTGTTG+CGG | - | chr1_2:56674230-56674249 | Msa0078990:intron | 25.0% |
| !!! | TTTTAACTTGAACAAAGGAA+TGG | + | chr1_2:56674414-56674433 | None:intergenic | 25.0% |
| ! | GTACTCGACAAATAAAATAA+TGG | + | chr1_2:56674473-56674492 | None:intergenic | 25.0% |
| ! | TGCAAAGATTAGAAGATAAT+GGG | + | chr1_2:56674616-56674635 | None:intergenic | 25.0% |
| ! | ATGCAAAGATTAGAAGATAA+TGG | + | chr1_2:56674617-56674636 | None:intergenic | 25.0% |
| ! | TTCAAAATGATTGATGCTTA+TGG | - | chr1_2:56674767-56674786 | Msa0078990:intron | 25.0% |
| ! | TAGTACTAAAATTGTCTGTT+TGG | - | chr1_2:56674841-56674860 | Msa0078990:intron | 25.0% |
| ! | GTTGGTTAATTGTTATACTT+AGG | + | chr1_2:56675079-56675098 | None:intergenic | 25.0% |
| !! | TTATTGTTGTTCAGTATACT+GGG | - | chr1_2:56675229-56675248 | Msa0078990:CDS | 25.0% |
| CATCATCGATCATGATAAAA+AGG | - | chr1_2:56672070-56672089 | Msa0078990:three_prime_UTR | 30.0% | |
| TCATTTCAACAATAAGCCTT+AGG | + | chr1_2:56672109-56672128 | None:intergenic | 30.0% | |
| ! | TCATGATTATGTTTTCGACA+AGG | - | chr1_2:56672183-56672202 | Msa0078990:CDS | 30.0% |
| ! | GAATTATTTCTCCTTGTCTT+TGG | + | chr1_2:56672291-56672310 | None:intergenic | 30.0% |
| ! | AAGTTATTTCCTAGTGTCTT+AGG | - | chr1_2:56672389-56672408 | Msa0078990:CDS | 30.0% |
| CTATAATTTCCTAAGACACT+AGG | + | chr1_2:56672401-56672420 | None:intergenic | 30.0% | |
| CTAGTGTCTTAGGAAATTAT+AGG | - | chr1_2:56672399-56672418 | Msa0078990:CDS | 30.0% | |
| !! | CTACTTTTAATATAGACCGT+AGG | - | chr1_2:56672431-56672450 | Msa0078990:CDS | 30.0% |
| AAAACTACCACTAAATCCTA+CGG | + | chr1_2:56672450-56672469 | None:intergenic | 30.0% | |
| AGAAGAAAGAGAAGATGAAA+AGG | + | chr1_2:56672663-56672682 | None:intergenic | 30.0% | |
| TGTAATAACAAGTTGTCTCA+TGG | + | chr1_2:56672727-56672746 | None:intergenic | 30.0% | |
| TTTATGTCCTAAACCATTGA+TGG | - | chr1_2:56672863-56672882 | Msa0078990:intron | 30.0% | |
| !! | TGAAATGAAGAGCATTCAAT+TGG | - | chr1_2:56672947-56672966 | Msa0078990:intron | 30.0% |
| AGAAAATTTAAGAGCTAACC+TGG | + | chr1_2:56673075-56673094 | None:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | - | chr1_2:56673125-56673144 | Msa0078990:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | - | chr1_2:56673126-56673145 | Msa0078990:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | - | chr1_2:56673150-56673169 | Msa0078990:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | - | chr1_2:56673216-56673235 | Msa0078990:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | - | chr1_2:56673252-56673271 | Msa0078990:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | - | chr1_2:56673335-56673354 | Msa0078990:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | + | chr1_2:56673491-56673510 | None:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | + | chr1_2:56673711-56673730 | None:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | - | chr1_2:56673727-56673746 | Msa0078990:intron | 30.0% | |
| CAGTAATTGATCACTAACAT+GGG | + | chr1_2:56673842-56673861 | None:intergenic | 30.0% | |
| ACAGTAATTGATCACTAACA+TGG | + | chr1_2:56673843-56673862 | None:intergenic | 30.0% | |
| ATAATCATTCCTCACTAACT+TGG | + | chr1_2:56673962-56673981 | None:intergenic | 30.0% | |
| AACAAGTGCTTGCAAAAATT+TGG | - | chr1_2:56674029-56674048 | Msa0078990:intron | 30.0% | |
| ATTCCAAATTCTAAGTCACA+GGG | + | chr1_2:56674061-56674080 | None:intergenic | 30.0% | |
| GCAACAATTAGGATCAAAAA+AGG | + | chr1_2:56674231-56674250 | None:intergenic | 30.0% | |
| !! | GTTATTTCTACACATGTTCA+TGG | - | chr1_2:56674362-56674381 | Msa0078990:intron | 30.0% |
| GCAAAGATTAGAAGATAATG+GGG | + | chr1_2:56674615-56674634 | None:intergenic | 30.0% | |
| ! | CATCTTTTGTGTACTACTTT+TGG | - | chr1_2:56674634-56674653 | Msa0078990:intron | 30.0% |
| AAGCTGCATATTGAGTATTT+GGG | + | chr1_2:56674739-56674758 | None:intergenic | 30.0% | |
| TAAGCTGCATATTGAGTATT+TGG | + | chr1_2:56674740-56674759 | None:intergenic | 30.0% | |
| ! | CTTATTGTTGTTCAGTATAC+TGG | - | chr1_2:56675228-56675247 | Msa0078990:CDS | 30.0% |
| ATGATAGATGAGATGTCAGA+AGG | + | chr1_2:56671978-56671997 | None:intergenic | 35.0% | |
| !! | ATCCTTTTTGGTAGGAATGT+TGG | + | chr1_2:56672021-56672040 | None:intergenic | 35.0% |
| !! | AGATAGAGATCCTTTTTGGT+AGG | + | chr1_2:56672029-56672048 | None:intergenic | 35.0% |
| ! | AGCAAGATAGAGATCCTTTT+TGG | + | chr1_2:56672033-56672052 | None:intergenic | 35.0% |
| TATCATGATCGATGATGAGA+GGG | + | chr1_2:56672067-56672086 | None:intergenic | 35.0% | |
| TTATCATGATCGATGATGAG+AGG | + | chr1_2:56672068-56672087 | None:intergenic | 35.0% | |
| CATCGATCATGATAAAAAGG+TGG | - | chr1_2:56672073-56672092 | Msa0078990:three_prime_UTR | 35.0% | |
| TTTACTAGTGTCTTAGTGCA+TGG | - | chr1_2:56672366-56672385 | Msa0078990:CDS | 35.0% | |
| ATATAGACCGTAGGATTTAG+TGG | - | chr1_2:56672440-56672459 | Msa0078990:CDS | 35.0% | |
| !!! | TAGTGGTAGTTTTTTCTACG+AGG | - | chr1_2:56672457-56672476 | Msa0078990:CDS | 35.0% |
| ATGGTATCCATCAATGGTTT+AGG | + | chr1_2:56672873-56672892 | None:intergenic | 35.0% | |
| TAAACTCCATTATCCATCGA+TGG | + | chr1_2:56672892-56672911 | None:intergenic | 35.0% | |
| !!! | CAACTGTTTACACCGATTTT+TGG | + | chr1_2:56672920-56672939 | None:intergenic | 35.0% |
| CAAAAATCGGTGTAAACAGT+TGG | - | chr1_2:56672918-56672937 | Msa0078990:intron | 35.0% | |
| ATTCAATTGGAGAGAAAGAG+TGG | - | chr1_2:56672960-56672979 | Msa0078990:intron | 35.0% | |
| TAGATCTCTTGCCATTGTTT+GGG | - | chr1_2:56673007-56673026 | Msa0078990:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | - | chr1_2:56673127-56673146 | Msa0078990:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | + | chr1_2:56673176-56673195 | None:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | + | chr1_2:56673186-56673205 | None:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | - | chr1_2:56673185-56673204 | Msa0078990:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | + | chr1_2:56673269-56673288 | None:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | - | chr1_2:56673315-56673334 | Msa0078990:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | + | chr1_2:56673487-56673506 | None:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | - | chr1_2:56673726-56673745 | Msa0078990:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | + | chr1_2:56673796-56673815 | None:intergenic | 35.0% | |
| ! | TTACTGTTGATGAGTTCTCT+TGG | - | chr1_2:56673856-56673875 | Msa0078990:intron | 35.0% |
| ! | TACTGTTGATGAGTTCTCTT+GGG | - | chr1_2:56673857-56673876 | Msa0078990:intron | 35.0% |
| AGTTCTCTTGGGTATTCAAA+AGG | - | chr1_2:56673868-56673887 | Msa0078990:intron | 35.0% | |
| TCTACTAATCCAAGTTAGTG+AGG | - | chr1_2:56673950-56673969 | Msa0078990:intron | 35.0% | |
| GCACTTGTTTGACTGAATTT+GGG | + | chr1_2:56674018-56674037 | None:intergenic | 35.0% | |
| AGCACTTGTTTGACTGAATT+TGG | + | chr1_2:56674019-56674038 | None:intergenic | 35.0% | |
| GATTCCAAATTCTAAGTCAC+AGG | + | chr1_2:56674062-56674081 | None:intergenic | 35.0% | |
| GATACTTAGGTGAAGTGATA+TGG | + | chr1_2:56674092-56674111 | None:intergenic | 35.0% | |
| GATATGTGTTGAGGATACTT+AGG | + | chr1_2:56674105-56674124 | None:intergenic | 35.0% | |
| CTTGGATGCAAAAGATAGTT+GGG | + | chr1_2:56674139-56674158 | None:intergenic | 35.0% | |
| ACTTGGATGCAAAAGATAGT+TGG | + | chr1_2:56674140-56674159 | None:intergenic | 35.0% | |
| TGTCGAGTACTTCATCATTA+AGG | - | chr1_2:56674483-56674502 | Msa0078990:intron | 35.0% | |
| !! | AGATTAGAAGATAATGGGGA+AGG | + | chr1_2:56674611-56674630 | None:intergenic | 35.0% |
| !! | TTTGTGTACTACTTTTGGAC+AGG | - | chr1_2:56674639-56674658 | Msa0078990:intron | 35.0% |
| AGCTGCATATTGAGTATTTG+GGG | + | chr1_2:56674738-56674757 | None:intergenic | 35.0% | |
| !! | AGACAATTTTAGTACTACGC+TGG | + | chr1_2:56674838-56674857 | None:intergenic | 35.0% |
| ! | ACTCTTTCATTTTCTATGCC+TGG | + | chr1_2:56674977-56674996 | None:intergenic | 35.0% |
| TCATCTGTATCAGATTCATC+TGG | + | chr1_2:56675000-56675019 | None:intergenic | 35.0% | |
| ATGAATCTGATACAGATGAG+TGG | - | chr1_2:56675001-56675020 | Msa0078990:intron | 35.0% | |
| TTGTTGAAGGAATTGAAGTC+AGG | - | chr1_2:56675053-56675072 | Msa0078990:intron | 35.0% | |
| TTGCATAGTTCAGTGAATGT+TGG | + | chr1_2:56675097-56675116 | None:intergenic | 35.0% | |
| AACATTCACTGAACTATGCA+AGG | - | chr1_2:56675096-56675115 | Msa0078990:intron | 35.0% | |
| ACATTCACTGAACTATGCAA+GGG | - | chr1_2:56675097-56675116 | Msa0078990:intron | 35.0% | |
| ! | TGGATATCTTTGTTGTGTTG+TGG | - | chr1_2:56675253-56675272 | Msa0078990:CDS | 35.0% |
| AAAACGATTCCATACAGCGT+CGG | + | chr1_2:56671952-56671971 | None:intergenic | 40.0% | |
| TTTGGTAGGAATGTTGGCAA+GGG | + | chr1_2:56672015-56672034 | None:intergenic | 40.0% | |
| ! | TTTTGGTAGGAATGTTGGCA+AGG | + | chr1_2:56672016-56672035 | None:intergenic | 40.0% |
| TGCCAACATTCCTACCAAAA+AGG | - | chr1_2:56672016-56672035 | Msa0078990:three_prime_UTR | 40.0% | |
| AGGTGGTATTCTTCTTCCTA+AGG | - | chr1_2:56672090-56672109 | Msa0078990:exon | 40.0% | |
| ! | TATGTTTTCGACAAGGCAGA+TGG | - | chr1_2:56672190-56672209 | Msa0078990:CDS | 40.0% |
| ! | ATGTTTTCGACAAGGCAGAT+GGG | - | chr1_2:56672191-56672210 | Msa0078990:CDS | 40.0% |
| CTTGTCTTTGGTCGAAATTG+CGG | + | chr1_2:56672279-56672298 | None:intergenic | 40.0% | |
| AATTGCAGGAATGTAAAGGG+TGG | + | chr1_2:56672602-56672621 | None:intergenic | 40.0% | |
| AGGACATAAATGTCGATCGA+TGG | + | chr1_2:56672853-56672872 | None:intergenic | 40.0% | |
| TGGATACCATCGATGGATAA+TGG | - | chr1_2:56672883-56672902 | Msa0078990:intron | 40.0% | |
| CTAGATCTCTTGCCATTGTT+TGG | - | chr1_2:56673006-56673025 | Msa0078990:intron | 40.0% | |
| AGATCTCTTGCCATTGTTTG+GGG | - | chr1_2:56673008-56673027 | Msa0078990:intron | 40.0% | |
| TCTATCATCACCCCAAACAA+TGG | + | chr1_2:56673021-56673040 | None:intergenic | 40.0% | |
| TGATTTCTATGCCTGATTCC+AGG | - | chr1_2:56673054-56673073 | Msa0078990:intron | 40.0% | |
| TTAAGAGCTAACCTGGAATC+AGG | + | chr1_2:56673068-56673087 | None:intergenic | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | - | chr1_2:56673175-56673194 | Msa0078990:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | - | chr1_2:56673189-56673208 | Msa0078990:intron | 40.0% | |
| AGTCAGTTAATTCGTAGCAG+AGG | + | chr1_2:56673923-56673942 | None:intergenic | 40.0% | |
| ! | TGAATTTGGGTTTGAACCTG+AGG | + | chr1_2:56674005-56674024 | None:intergenic | 40.0% |
| TGTCCCTGTGACTTAGAATT+TGG | - | chr1_2:56674055-56674074 | Msa0078990:intron | 40.0% | |
| ACTTAGGTGAAGTGATATGG+AGG | + | chr1_2:56674089-56674108 | None:intergenic | 40.0% | |
| ! | AAGAGCATGGATATGTGTTG+AGG | + | chr1_2:56674114-56674133 | None:intergenic | 40.0% |
| ACTTCATCATTAAGGACTGC+TGG | - | chr1_2:56674491-56674510 | Msa0078990:intron | 40.0% | |
| TGTAGTGAGCAAGACAGAAA+TGG | + | chr1_2:56674553-56674572 | None:intergenic | 40.0% | |
| GGAAGGAATCTCAGAAAATG+GGG | + | chr1_2:56674594-56674613 | None:intergenic | 40.0% | |
| GGGAAGGAATCTCAGAAAAT+GGG | + | chr1_2:56674595-56674614 | None:intergenic | 40.0% | |
| !! | CTAAGCTTGTTGATGTGTGT+TGG | - | chr1_2:56674675-56674694 | Msa0078990:intron | 40.0% |
| !! | GTGTGTTGGCTTGAAATTCA+TGG | - | chr1_2:56674689-56674708 | Msa0078990:intron | 40.0% |
| CATATTGAGTATTTGGGGAC+AGG | + | chr1_2:56674733-56674752 | None:intergenic | 40.0% | |
| TGGATTTCAGAACTGTTCTG+CGG | - | chr1_2:56674787-56674806 | Msa0078990:intron | 40.0% | |
| TGTTCTGCGGATTTATCAGT+TGG | - | chr1_2:56674800-56674819 | Msa0078990:intron | 40.0% | |
| !! | GATTTATCAGTTGGTGTCGA+AGG | - | chr1_2:56674809-56674828 | Msa0078990:intron | 40.0% |
| TGTCTGTTTGGATCCAAATG+TGG | - | chr1_2:56674853-56674872 | Msa0078990:intron | 40.0% | |
| TGTTTGGATCCAAATGTGGA+AGG | - | chr1_2:56674857-56674876 | Msa0078990:intron | 40.0% | |
| TGAGGATTACCTTCCACATT+TGG | + | chr1_2:56674869-56674888 | None:intergenic | 40.0% | |
| AATCCTACTACTGTGTTGTG+CGG | + | chr1_2:56674893-56674912 | None:intergenic | 40.0% | |
| AATCTGATACAGATGAGTGG+TGG | - | chr1_2:56675004-56675023 | Msa0078990:intron | 40.0% | |
| CATTCACTGAACTATGCAAG+GGG | - | chr1_2:56675098-56675117 | Msa0078990:intron | 40.0% | |
| TGTTGTTCAGTATACTGGGA+TGG | - | chr1_2:56675233-56675252 | Msa0078990:CDS | 40.0% | |
| AATCAACAGACATCAGGAAG+AGG | + | chr1_2:56675283-56675302 | None:intergenic | 40.0% | |
| TGGAACAATCAACAGACATC+AGG | + | chr1_2:56675289-56675308 | None:intergenic | 40.0% | |
| GACAGAGATTCAGGATTTGC+CGG | - | chr1_2:56671833-56671852 | Msa0078990:three_prime_UTR | 45.0% | |
| AGTTGTACGAGAGACTATGG+TGG | + | chr1_2:56671871-56671890 | None:intergenic | 45.0% | |
| TGGAGTTGTACGAGAGACTA+TGG | + | chr1_2:56671874-56671893 | None:intergenic | 45.0% | |
| !! | TCGGAAAGTGTTGGAAACGA+CGG | + | chr1_2:56671916-56671935 | None:intergenic | 45.0% |
| GACATGCTGCAAAGTGCAAA+GGG | - | chr1_2:56672221-56672240 | Msa0078990:CDS | 45.0% | |
| CGCAATTTCGACCAAAGACA+AGG | - | chr1_2:56672277-56672296 | Msa0078990:CDS | 45.0% | |
| CATGAACCCATATGCTCTTG+TGG | + | chr1_2:56672555-56672574 | None:intergenic | 45.0% | |
| AGAGCATATGGGTTCATGAG+TGG | - | chr1_2:56672557-56672576 | Msa0078990:intron | 45.0% | |
| AAGTGATGTCATAAACCGCG+AGG | - | chr1_2:56672793-56672812 | Msa0078990:intron | 45.0% | |
| CCATCGATGGTATCCATCAA+TGG | + | chr1_2:56672879-56672898 | None:intergenic | 45.0% | |
| ! | CCATTGATGGATACCATCGA+TGG | - | chr1_2:56672876-56672895 | Msa0078990:intron | 45.0% |
| CAGTTAATTCGTAGCAGAGG+AGG | + | chr1_2:56673920-56673939 | None:intergenic | 45.0% | |
| AAACTCATAGCAACCACCTC+AGG | - | chr1_2:56673986-56674005 | Msa0078990:intron | 45.0% | |
| ! | ATTTGGGTTTGAACCTGAGG+TGG | + | chr1_2:56674002-56674021 | None:intergenic | 45.0% |
| AGATAGTTGGGTGAAGAGCA+TGG | + | chr1_2:56674127-56674146 | None:intergenic | 45.0% | |
| GCATCCAAGTTCAGCTTGAT+TGG | - | chr1_2:56674150-56674169 | Msa0078990:CDS | 45.0% | |
| GGATCCAATCAAGCTGAACT+TGG | + | chr1_2:56674157-56674176 | None:intergenic | 45.0% | |
| GCTACAGAAGAAGGATCTTG+GGG | + | chr1_2:56674178-56674197 | None:intergenic | 45.0% | |
| CGCTACAGAAGAAGGATCTT+GGG | + | chr1_2:56674179-56674198 | None:intergenic | 45.0% | |
| ! | GCAGTTTTTGCTTCATCTGC+AGG | - | chr1_2:56674201-56674220 | Msa0078990:intron | 45.0% |
| TCATCATTAAGGACTGCTGG+TGG | - | chr1_2:56674494-56674513 | Msa0078990:intron | 45.0% | |
| ! | GGAAAAGCTGATGATGTTCG+TGG | - | chr1_2:56674524-56674543 | Msa0078990:intron | 45.0% |
| GGGGAAGGAATCTCAGAAAA+TGG | + | chr1_2:56674596-56674615 | None:intergenic | 45.0% | |
| CAACAAGCTTAGCGACTTCA+GGG | + | chr1_2:56674667-56674686 | None:intergenic | 45.0% | |
| TCAACAAGCTTAGCGACTTC+AGG | + | chr1_2:56674668-56674687 | None:intergenic | 45.0% | |
| !! | TTATCAGTTGGTGTCGAAGG+TGG | - | chr1_2:56674812-56674831 | Msa0078990:intron | 45.0% |
| ATGGGTGAGTTCTTCAATCC+AGG | - | chr1_2:56674956-56674975 | Msa0078990:intron | 45.0% | |
| AAGAGAGGTCTCGTTGTTGA+AGG | - | chr1_2:56675040-56675059 | Msa0078990:intron | 45.0% | |
| TGAACTATGCAAGGGGTCTT+GGG | - | chr1_2:56675105-56675124 | Msa0078990:intron | 45.0% | |
| GAGATTCAGGATTTGCCGGA+AGG | - | chr1_2:56671837-56671856 | Msa0078990:three_prime_UTR | 50.0% | |
| ATGGTGGCAATGCATCCTTC+CGG | + | chr1_2:56671855-56671874 | None:intergenic | 50.0% | |
| ! | ATTCCATACAGCGTCGGAGT+TGG | + | chr1_2:56671946-56671965 | None:intergenic | 50.0% |
| GTAGGAATGTTGGCAAGGGA+AGG | + | chr1_2:56672011-56672030 | None:intergenic | 50.0% | |
| CGACATGCTGCAAAGTGCAA+AGG | - | chr1_2:56672220-56672239 | Msa0078990:CDS | 50.0% | |
| GAAGTTGCAATTGGAGCGCA+TGG | - | chr1_2:56672311-56672330 | Msa0078990:CDS | 50.0% | |
| GAACCCATATGCTCTTGTGG+CGG | + | chr1_2:56672552-56672571 | None:intergenic | 50.0% | |
| GCAGGAATGTAAAGGGTGGT+TGG | + | chr1_2:56672598-56672617 | None:intergenic | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | - | chr1_2:56673027-56673046 | Msa0078990:intron | 50.0% | |
| GCGCTACAGAAGAAGGATCT+TGG | + | chr1_2:56674180-56674199 | None:intergenic | 50.0% | |
| AACTGCAGCGCTACAGAAGA+AGG | + | chr1_2:56674187-56674206 | None:intergenic | 50.0% | |
| GTTCGGTTGCCGCAACAATT+AGG | + | chr1_2:56674242-56674261 | None:intergenic | 50.0% | |
| AGTATTTGGGGACAGGACGA+TGG | + | chr1_2:56674726-56674745 | None:intergenic | 50.0% | |
| GTCCTACTGTGAGAAGCGAT+GGG | - | chr1_2:56674918-56674937 | Msa0078990:intron | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | - | chr1_2:56674937-56674956 | Msa0078990:intron | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | - | chr1_2:56674938-56674957 | Msa0078990:intron | 50.0% | |
| ATACAGATGAGTGGTGGTCG+TGG | - | chr1_2:56675010-56675029 | Msa0078990:intron | 50.0% | |
| CTGAACTATGCAAGGGGTCT+TGG | - | chr1_2:56675104-56675123 | Msa0078990:intron | 50.0% | |
| CGTACAACTCCAGTTGACGC+CGG | - | chr1_2:56671882-56671901 | Msa0078990:three_prime_UTR | 55.0% | |
| ! | GGAGGCTGATCGGAAAGTGT+TGG | + | chr1_2:56671925-56671944 | None:intergenic | 55.0% |
| GGAGCGCATGGTGACAAACA+AGG | - | chr1_2:56672323-56672342 | Msa0078990:CDS | 55.0% | |
| AGGACTGCTGGTGGTCATTG+AGG | - | chr1_2:56674503-56674522 | Msa0078990:intron | 55.0% | |
| ACTACTGTGTTGTGCGGCTG+AGG | + | chr1_2:56674887-56674906 | None:intergenic | 55.0% | |
| CAGCCGCACAACACAGTAGT+AGG | - | chr1_2:56674887-56674906 | Msa0078990:intron | 55.0% | |
| CGTCCTACTGTGAGAAGCGA+TGG | - | chr1_2:56674917-56674936 | Msa0078990:intron | 55.0% | |
| CACCCATCGCTTCTCACAGT+AGG | + | chr1_2:56674923-56674942 | None:intergenic | 55.0% | |
| CTACTGTGAGAAGCGATGGG+TGG | - | chr1_2:56674921-56674940 | Msa0078990:intron | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | chr1_2:56674925-56674944 | Msa0078990:intron | 55.0% | |
| GGAAACGACGGAGAGTCTGC+CGG | + | chr1_2:56671904-56671923 | None:intergenic | 60.0% | |
| CGTCGGAGTTGGAGGCTGAT+CGG | + | chr1_2:56671935-56671954 | None:intergenic | 60.0% | |
| ! | CCATACAGCGTCGGAGTTGG+AGG | + | chr1_2:56671943-56671962 | None:intergenic | 60.0% |
| CCTCCAACTCCGACGCTGTA+TGG | - | chr1_2:56671940-56671959 | Msa0078990:three_prime_UTR | 60.0% | |
| ATATGCTCTTGTGGCGGCGG+GGG | + | chr1_2:56672546-56672565 | None:intergenic | 60.0% | |
| CATATGCTCTTGTGGCGGCG+GGG | + | chr1_2:56672547-56672566 | None:intergenic | 60.0% | |
| CCATATGCTCTTGTGGCGGC+GGG | + | chr1_2:56672548-56672567 | None:intergenic | 60.0% | |
| CCCATATGCTCTTGTGGCGG+CGG | + | chr1_2:56672549-56672568 | None:intergenic | 60.0% | |
| ! | CCGCCGCCACAAGAGCATAT+GGG | - | chr1_2:56672546-56672565 | Msa0078990:intron | 60.0% |
| CAGATGAGTGGTGGTCGTGG+TGG | - | chr1_2:56675013-56675032 | Msa0078990:intron | 60.0% | |
| TGAGTGGTGGTCGTGGTGGT+TGG | - | chr1_2:56675017-56675036 | Msa0078990:intron | 60.0% | |
| GGTCGTGGTGGTTGGAAGAG+AGG | - | chr1_2:56675025-56675044 | Msa0078990:intron | 60.0% | |
| ATGCAAGGGGTCTTGGGTCG+TGG | - | chr1_2:56675111-56675130 | Msa0078990:intron | 60.0% | |
| GAGAGTCTGCCGGCGTCAAC+TGG | + | chr1_2:56671894-56671913 | None:intergenic | 65.0% | |
| ! | CCCGCCGCCACAAGAGCATA+TGG | - | chr1_2:56672545-56672564 | Msa0078990:intron | 65.0% |
| GGGGGATCGTTCAAGCCTCG+CGG | + | chr1_2:56672811-56672830 | None:intergenic | 65.0% | |
| ! | TCTTGTGGCGGCGGGGGTGT+TGG | + | chr1_2:56672540-56672559 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 56671831 | 56675361 | 56671831 | ID=Msa0078990;Name=Msa0078990 |
| chr1_2 | mRNA | 56671831 | 56675361 | 56671831 | ID=Msa0078990-mRNA-1;Parent=Msa0078990;Name=Msa0078990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|1|1|1|3|268|240 |
| chr1_2 | exon | 56671831 | 56672531 | 56671831 | ID=Msa0078990-mRNA-1:exon:17775;Parent=Msa0078990-mRNA-1 |
| chr1_2 | exon | 56674117 | 56674182 | 56674117 | ID=Msa0078990-mRNA-1:exon:17774;Parent=Msa0078990-mRNA-1 |
| chr1_2 | exon | 56675138 | 56675361 | 56675138 | ID=Msa0078990-mRNA-1:exon:17773;Parent=Msa0078990-mRNA-1 |
| chr1_2 | CDS | 56675138 | 56675361 | 56675138 | ID=Msa0078990-mRNA-1:cds;Parent=Msa0078990-mRNA-1 |
| chr1_2 | CDS | 56674117 | 56674182 | 56674117 | ID=Msa0078990-mRNA-1:cds;Parent=Msa0078990-mRNA-1 |
| chr1_2 | CDS | 56672099 | 56672531 | 56672099 | ID=Msa0078990-mRNA-1:cds;Parent=Msa0078990-mRNA-1 |
| chr1_2 | three_prime_UTR | 56671831 | 56672098 | 56671831 | ID=Msa0078990-mRNA-1:three_prime_utr;Parent=Msa0078990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
