AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343230 MtrunA17_Chr3g0123081 96.507 229 6 1 1 229 1 227 1.47e-165 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343230 AT1G67700.2 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa0343230 AT1G67700.5 69.787 235 60 5 1 229 1 230 2.29e-112 322
Msa0343230 AT1G67700.4 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa0343230 AT1G67700.1 69.787 235 60 5 1 229 1 230 2.36e-112 322
Msa0343230 AT1G67700.3 69.362 235 60 6 1 229 1 229 7.97e-110 315

Find 65 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGATGTTGGCGTTGAGTTC+TGG 0.117900 3_1:-1236754 None:intergenic
ATTACCGTCGTCTTCAATTT+TGG 0.126709 3_1:-1236868 None:intergenic
TATCCTCTTAGTATTGTTTC+TGG 0.147550 3_1:+1236936 Msa0343230:CDS
CGAATGAAGACGACGAATTT+AGG 0.163591 3_1:-1236891 None:intergenic
TCTTGGCAAATTTATTTATA+AGG 0.207596 3_1:+1237001 Msa0343230:CDS
GAGAGAGAGAATTCGATAAA+AGG 0.261619 3_1:-1236555 None:intergenic
TGTGCTAATACCAGGGTTAA+AGG 0.270565 3_1:+1239181 Msa0343230:intron
GCTTTGTGCTGTTTGTAAAT+TGG 0.299833 3_1:+1239274 Msa0343230:three_prime_UTR
GCTGTTTGTAAATTGGTTAA+TGG 0.314824 3_1:+1239281 Msa0343230:three_prime_UTR
GTATGGCTAATGTTTATCTT+TGG 0.328706 3_1:+1236913 Msa0343230:CDS
AACTAACTAACTCAGGTAAC+TGG 0.361517 3_1:-1236590 None:intergenic
GGAGATGTAAAGGAGTCCTT+TGG 0.366310 3_1:+1238979 Msa0343230:CDS
TGGTACCACTGCTAAAATTA+TGG 0.385812 3_1:+1236959 Msa0343230:CDS
TGATGTTGGCGTTGAGTTCT+GGG 0.389647 3_1:-1236753 None:intergenic
TTGAATCGTTAAGTGCTGTT+TGG 0.396064 3_1:+1239231 Msa0343230:three_prime_UTR
TTAAAGGATGAACTTATATC+AGG 0.402851 3_1:+1239197 Msa0343230:three_prime_UTR
GAGTGAGTCGTTGTGGAACC+TGG 0.423768 3_1:-1236709 None:intergenic
TGAGTTCTGGGGAATTGTCT+TGG 0.431127 3_1:-1236741 None:intergenic
TAAAATTATGTGTTGGGTGC+AGG 0.440944 3_1:-1239348 None:intergenic
GAGATGTAAAGGAGTCCTTT+GGG 0.442632 3_1:+1238980 Msa0343230:CDS
TGCAGGTATAAGAACAAAAC+AGG 0.451906 3_1:-1239331 None:intergenic
GAAATTATGTGTGATTATAA+AGG 0.452430 3_1:-1239392 None:intergenic
GATTATGAATTGCAGGAGAA+TGG 0.452904 3_1:+1238273 Msa0343230:intron
TCGGCTACTGAATTCAGATA+TGG 0.454393 3_1:+1238149 Msa0343230:CDS
AGAACATAAAATTATGTGTT+GGG 0.454543 3_1:-1239354 None:intergenic
AGAGAGAGAATTCGATAAAA+GGG 0.454676 3_1:-1236554 None:intergenic
CATGCGTTTCGAGATTCTCT+CGG 0.455696 3_1:-1236631 None:intergenic
TGATGCAACATATTTGATAG+AGG 0.456476 3_1:+1239083 Msa0343230:three_prime_UTR
TTCTACCAGTGATGTTATTG+AGG 0.459749 3_1:+1238314 Msa0343230:CDS
ACTAACTCAGGTAACTGGAT+AGG 0.494951 3_1:-1236585 None:intergenic
TCTCGGAGTTGTTGTGATGA+TGG 0.503996 3_1:-1236614 None:intergenic
CACTATCAAGTTCAAGCTCC+AGG 0.504458 3_1:+1236691 Msa0343230:CDS
CTAACTCAGGTAACTGGATA+GGG 0.508336 3_1:-1236584 None:intergenic
ATTCGTCGTCTTCATTCGTA+TGG 0.513591 3_1:+1236896 Msa0343230:CDS
TCTGGGGAATTGTCTTGGAA+TGG 0.516106 3_1:-1236736 None:intergenic
TCAGAAATGTCTTAAAGTAA+TGG 0.522609 3_1:-1239416 None:intergenic
CCTCTTAGTATTGTTTCTGG+TGG 0.528582 3_1:+1236939 Msa0343230:CDS
TGTCTTGGTTGTTGAAGCAA+AGG 0.532305 3_1:+1236791 Msa0343230:CDS
AAAGCTTTCTAAAGCTCATA+CGG 0.537225 3_1:-1239256 None:intergenic
GTCTTGGTTGTTGAAGCAAA+GGG 0.544651 3_1:+1236792 Msa0343230:CDS
CCACCAGAAACAATACTAAG+AGG 0.550315 3_1:-1236939 None:intergenic
TCAATTCAAATAGGATGAGA+AGG 0.553484 3_1:+1238085 Msa0343230:intron
CCAAGACATGGTGGTGGTGG+TGG 0.560506 3_1:-1236776 None:intergenic
ATCTCGAAACGCATGGAAGT+AGG 0.561046 3_1:+1236639 Msa0343230:exon
CTGGAGCTTGAACTTGATAG+TGG 0.561983 3_1:-1236690 None:intergenic
TGAATCTTCCTCTGACTCAT+CGG 0.568977 3_1:-1239028 None:intergenic
TATCACCTCAATAACATCAC+TGG 0.580790 3_1:-1238319 None:intergenic
CAACCAAGACATGGTGGTGG+TGG 0.586870 3_1:-1236779 None:intergenic
TGGAGAAGAGTGAGTCGTTG+TGG 0.587691 3_1:-1236716 None:intergenic
TGATGGTAACTAACTAACTC+AGG 0.598757 3_1:-1236597 None:intergenic
CGAGAGAATCTCGAAACGCA+TGG 0.599024 3_1:+1236632 Msa0343230:exon
TACTGCTACCGATGAGTCAG+AGG 0.607803 3_1:+1239020 Msa0343230:CDS
CAGAACATAAAATTATGTGT+TGG 0.611659 3_1:-1239355 None:intergenic
ACAACACCGTGTACTAAAGT+CGG 0.619103 3_1:+1238130 Msa0343230:CDS
TAACGATGTTATTTCCCCAA+AGG 0.619108 3_1:-1238995 None:intergenic
TTGCTTCAACAACCAAGACA+TGG 0.623521 3_1:-1236788 None:intergenic
GAGCTTGAACTTGATAGTGG+TGG 0.644572 3_1:-1236687 None:intergenic
ATTATGTGTGATTATAAAGG+CGG 0.648477 3_1:-1239389 None:intergenic
GATGTTGGCGTTGAGTTCTG+GGG 0.652469 3_1:-1236752 None:intergenic
CAGTAGCCGACTTTAGTACA+CGG 0.657329 3_1:-1238136 None:intergenic
CAACAACCAAGACATGGTGG+TGG 0.667199 3_1:-1236782 None:intergenic
CTTCAACAACCAAGACATGG+TGG 0.675309 3_1:-1236785 None:intergenic
TTACCCAAAATTGAAGACGA+CGG 0.694339 3_1:+1236864 Msa0343230:CDS
AGATGTAAAGGAGTCCTTTG+GGG 0.702608 3_1:+1238981 Msa0343230:CDS
AATGCAAGAATATTACAACT+CGG 0.706659 3_1:-1239455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATGAAAAAAAAGTTA+GGG - chr3_1:1237078-1237097 None:intergenic 10.0%
!! AAATTAATGAAAAAAAAGTT+AGG - chr3_1:1237079-1237098 None:intergenic 10.0%
!!! TTTAAATGTTCATAATTTTA+TGG + chr3_1:1237696-1237715 Msa0343230:intron 10.0%
!! AAATATATGTATTGAAATAT+AGG - chr3_1:1238196-1238215 None:intergenic 10.0%
!! ATTAATGAAAAAAAAGTTAG+GGG - chr3_1:1237077-1237096 None:intergenic 15.0%
!! AAAAAAAAAAATATCGAGAA+TGG + chr3_1:1237147-1237166 Msa0343230:intron 15.0%
!! AAAAAAAAAATATCGAGAAT+GGG + chr3_1:1237148-1237167 Msa0343230:intron 15.0%
!! TATGAACATTTAAAAAATCA+TGG - chr3_1:1237690-1237709 None:intergenic 15.0%
!! TAATAACTTTACAGAAATAA+TGG + chr3_1:1238475-1238494 Msa0343230:intron 15.0%
!! ATTTATGAAATATGATAGAT+AGG + chr3_1:1238548-1238567 Msa0343230:intron 15.0%
!!! TTTTATTGTTTGTTGTTTTA+TGG + chr3_1:1239554-1239573 Msa0343230:three_prime_UTR 15.0%
!!! TTTATTGTTTGTTGTTTTAT+GGG + chr3_1:1239555-1239574 Msa0343230:three_prime_UTR 15.0%
!! TCTTGGCAAATTTATTTATA+AGG + chr3_1:1237001-1237020 Msa0343230:CDS 20.0%
!! AAAAAAAAATATCGAGAATG+GGG + chr3_1:1237149-1237168 Msa0343230:intron 20.0%
!!! TTTACCTTCAAGATAATTTT+AGG + chr3_1:1237384-1237403 Msa0343230:intron 20.0%
!! ACTCTATTAAACTTTCAAAT+TGG + chr3_1:1237519-1237538 Msa0343230:intron 20.0%
!! TAGTAAGTGGTTAAAATATA+AGG - chr3_1:1237578-1237597 None:intergenic 20.0%
!! ACAAATAAAAGTTCAGTTTA+AGG - chr3_1:1238352-1238371 None:intergenic 20.0%
!!! ATCTCTACAATTTTCAATTA+GGG - chr3_1:1238748-1238767 None:intergenic 20.0%
!!! AATCTCTACAATTTTCAATT+AGG - chr3_1:1238749-1238768 None:intergenic 20.0%
!!! ATGCTTTCTTTTTAGTTATA+AGG + chr3_1:1238822-1238841 Msa0343230:intron 20.0%
!! AGAACATAAAATTATGTGTT+GGG - chr3_1:1239357-1239376 None:intergenic 20.0%
!! GAAATTATGTGTGATTATAA+AGG - chr3_1:1239395-1239414 None:intergenic 20.0%
! AAAGTTAAGGACTAATATAG+TGG - chr3_1:1237445-1237464 None:intergenic 25.0%
! ATATTAGTCCTTAACTTTGT+AGG + chr3_1:1237447-1237466 Msa0343230:intron 25.0%
! TATTAGTCCTTAACTTTGTA+GGG + chr3_1:1237448-1237467 Msa0343230:intron 25.0%
!! AAGATCAAATTGATAGTAAG+TGG - chr3_1:1237591-1237610 None:intergenic 25.0%
! ATAGACAACGGATAAAATTT+CGG + chr3_1:1237870-1237889 Msa0343230:intron 25.0%
!! TTTTTCTTGGTTATGTATGT+TGG + chr3_1:1238022-1238041 Msa0343230:intron 25.0%
!!! TTTTTCAGATTATGAATTGC+AGG + chr3_1:1238266-1238285 Msa0343230:intron 25.0%
! TATTTAAAGACAATACTCCA+AGG + chr3_1:1238645-1238664 Msa0343230:intron 25.0%
!!! CTATTTAAAGACTTGCTAAT+AGG + chr3_1:1238668-1238687 Msa0343230:intron 25.0%
!!! TTTTGTTATGATGGTTGTTT+AGG - chr3_1:1238721-1238740 None:intergenic 25.0%
!!! TAGGGATATTTTTGTTATGA+TGG - chr3_1:1238730-1238749 None:intergenic 25.0%
!!! GGTTCTTTTTCATAATATTG+AGG + chr3_1:1238843-1238862 Msa0343230:intron 25.0%
!! GATAAAGTGAAAGACTTTTT+CGG + chr3_1:1238958-1238977 Msa0343230:CDS 25.0%
! TTAAAGGATGAACTTATATC+AGG + chr3_1:1239197-1239216 Msa0343230:three_prime_UTR 25.0%
! CAGAACATAAAATTATGTGT+TGG - chr3_1:1239358-1239377 None:intergenic 25.0%
! ATTATGTGTGATTATAAAGG+CGG - chr3_1:1239392-1239411 None:intergenic 25.0%
! TCAGAAATGTCTTAAAGTAA+TGG - chr3_1:1239419-1239438 None:intergenic 25.0%
! AATGCAAGAATATTACAACT+CGG - chr3_1:1239458-1239477 None:intergenic 25.0%
!!! ATTCTTGCATTTTATTTCAC+AGG + chr3_1:1239467-1239486 Msa0343230:three_prime_UTR 25.0%
AGAGAGAGAATTCGATAAAA+GGG - chr3_1:1236557-1236576 None:intergenic 30.0%
GTATGGCTAATGTTTATCTT+TGG + chr3_1:1236913-1236932 Msa0343230:CDS 30.0%
TATCCTCTTAGTATTGTTTC+TGG + chr3_1:1236936-1236955 Msa0343230:CDS 30.0%
! GCTGCTAAAGATAATTTTCT+TGG + chr3_1:1236984-1237003 Msa0343230:CDS 30.0%
TTAGGGGAAAAAATCTTACT+CGG - chr3_1:1237061-1237080 None:intergenic 30.0%
CACAAATAATCAGCAACAAT+GGG - chr3_1:1237240-1237259 None:intergenic 30.0%
ACACAAATAATCAGCAACAA+TGG - chr3_1:1237241-1237260 None:intergenic 30.0%
AAATGATTCTAACTTGAAGC+CGG + chr3_1:1237268-1237287 Msa0343230:intron 30.0%
! AAACTTAAAGCTCTAATGTC+CGG - chr3_1:1237290-1237309 None:intergenic 30.0%
AAGGTAAAGTCATTCATGTT+TGG - chr3_1:1237372-1237391 None:intergenic 30.0%
! ACCTTCAAGATAATTTTAGG+CGG + chr3_1:1237387-1237406 Msa0343230:intron 30.0%
! TTTGAGATATTCACAATCTC+AGG - chr3_1:1237489-1237508 None:intergenic 30.0%
ATAGCAAGCAGTTAAATACA+TGG - chr3_1:1237546-1237565 None:intergenic 30.0%
!! TTAACTGCTTGCTATCAATT+AGG + chr3_1:1237551-1237570 Msa0343230:intron 30.0%
GGGACTAAATTCATAATAAG+CGG - chr3_1:1237623-1237642 None:intergenic 30.0%
TCACATTGATGTTAGTCAAA+TGG - chr3_1:1237770-1237789 None:intergenic 30.0%
GAACTACGTGTATGAAAATA+CGG + chr3_1:1237810-1237829 Msa0343230:intron 30.0%
TGTGTGACCAACTATAATTA+TGG + chr3_1:1237833-1237852 Msa0343230:intron 30.0%
TCTCTTGCCATAATTATAGT+TGG - chr3_1:1237843-1237862 None:intergenic 30.0%
! AGAGACTTTTTGATAGACAA+CGG + chr3_1:1237858-1237877 Msa0343230:intron 30.0%
! TGAGCTCTTTTTAACCATTA+TGG + chr3_1:1237961-1237980 Msa0343230:intron 30.0%
AGAAATTAGAGTCTCCATAA+TGG - chr3_1:1237978-1237997 None:intergenic 30.0%
!!! ATGATGAGCATGTTTTTTCT+TGG + chr3_1:1238009-1238028 Msa0343230:intron 30.0%
TCAATTCAAATAGGATGAGA+AGG + chr3_1:1238085-1238104 Msa0343230:intron 30.0%
TCACTGAATTCATCTTCAAT+TGG - chr3_1:1238224-1238243 None:intergenic 30.0%
TTTAAACCTTATACCGCATT+AGG + chr3_1:1238390-1238409 Msa0343230:intron 30.0%
TTAAACCTTATACCGCATTA+GGG + chr3_1:1238391-1238410 Msa0343230:intron 30.0%
AAAAGTTACATGAACAACCA+GGG - chr3_1:1238450-1238469 None:intergenic 30.0%
! AATAATGGAAACTGTCTGTT+AGG + chr3_1:1238490-1238509 Msa0343230:intron 30.0%
TTTCTATTCCATTCAATTCC+CGG - chr3_1:1238519-1238538 None:intergenic 30.0%
!! AGAGTATTGTCTATTGTGAA+GGG - chr3_1:1238600-1238619 None:intergenic 30.0%
!! TAGAGTATTGTCTATTGTGA+AGG - chr3_1:1238601-1238620 None:intergenic 30.0%
!!! GTTTTTAGTTTATCTGGTGT+AGG - chr3_1:1238931-1238950 None:intergenic 30.0%
!!! GCTACAGTTTTTAGTTTATC+TGG - chr3_1:1238937-1238956 None:intergenic 30.0%
TGATGCAACATATTTGATAG+AGG + chr3_1:1239083-1239102 Msa0343230:three_prime_UTR 30.0%
TATGCACTGTAATGAATACA+TGG + chr3_1:1239118-1239137 Msa0343230:intron 30.0%
!!! ATTGTTTTTGTGCTAATACC+AGG + chr3_1:1239173-1239192 Msa0343230:intron 30.0%
!!! TTGTTTTTGTGCTAATACCA+GGG + chr3_1:1239174-1239193 Msa0343230:intron 30.0%
!! AAAGCTTTCTAAAGCTCATA+CGG - chr3_1:1239259-1239278 None:intergenic 30.0%
GCTGTTTGTAAATTGGTTAA+TGG + chr3_1:1239281-1239300 Msa0343230:three_prime_UTR 30.0%
GAGAGAGAGAATTCGATAAA+AGG - chr3_1:1236558-1236577 None:intergenic 35.0%
AACTAACTAACTCAGGTAAC+TGG - chr3_1:1236593-1236612 None:intergenic 35.0%
TGATGGTAACTAACTAACTC+AGG - chr3_1:1236600-1236619 None:intergenic 35.0%
GTTGAAGCAAAGGGTAAAAA+AGG + chr3_1:1236801-1236820 Msa0343230:CDS 35.0%
!! TCTTCAATTTTGGGTAAAGG+AGG - chr3_1:1236861-1236880 None:intergenic 35.0%
!! TCGTCTTCAATTTTGGGTAA+AGG - chr3_1:1236864-1236883 None:intergenic 35.0%
TTACCCAAAATTGAAGACGA+CGG + chr3_1:1236864-1236883 Msa0343230:CDS 35.0%
! TTACCGTCGTCTTCAATTTT+GGG - chr3_1:1236870-1236889 None:intergenic 35.0%
! ATTACCGTCGTCTTCAATTT+TGG - chr3_1:1236871-1236890 None:intergenic 35.0%
TGGTACCACTGCTAAAATTA+TGG + chr3_1:1236959-1236978 Msa0343230:CDS 35.0%
!! AGCAACCATAATTTTAGCAG+TGG - chr3_1:1236967-1236986 None:intergenic 35.0%
TCCGCCTAAAATTATCTTGA+AGG - chr3_1:1237391-1237410 None:intergenic 35.0%
ACTTTATAGGGCTCTCAAAT+AGG - chr3_1:1237723-1237742 None:intergenic 35.0%
AATTCGTCCCTGACTTTATA+GGG - chr3_1:1237735-1237754 None:intergenic 35.0%
AAATTCGTCCCTGACTTTAT+AGG - chr3_1:1237736-1237755 None:intergenic 35.0%
! TGTATGTTGGTTATGCATGT+TGG + chr3_1:1238035-1238054 Msa0343230:intron 35.0%
CTGCTTGCTTCAATTCAAAT+AGG + chr3_1:1238076-1238095 Msa0343230:intron 35.0%
GATTATGAATTGCAGGAGAA+TGG + chr3_1:1238273-1238292 Msa0343230:intron 35.0%
TTCTACCAGTGATGTTATTG+AGG + chr3_1:1238314-1238333 Msa0343230:CDS 35.0%
TATCACCTCAATAACATCAC+TGG - chr3_1:1238322-1238341 None:intergenic 35.0%
GAACATATATGTCCCTAATG+CGG - chr3_1:1238406-1238425 None:intergenic 35.0%
GAAAAGTTACATGAACAACC+AGG - chr3_1:1238451-1238470 None:intergenic 35.0%
TTCTATTCCATTCAATTCCC+GGG - chr3_1:1238518-1238537 None:intergenic 35.0%
! GAGTATTGTCTATTGTGAAG+GGG - chr3_1:1238599-1238618 None:intergenic 35.0%
AGCAAGTCTTTAAATAGCCT+TGG - chr3_1:1238665-1238684 None:intergenic 35.0%
!! TAGGTGGTTAGTTTGTTATG+TGG - chr3_1:1238702-1238721 None:intergenic 35.0%
TGTTATGATGGTTGTTTAGG+TGG - chr3_1:1238718-1238737 None:intergenic 35.0%
!!! AGACTTTTTCGGAGATGTAA+AGG + chr3_1:1238969-1238988 Msa0343230:CDS 35.0%
!! TAACGATGTTATTTCCCCAA+AGG - chr3_1:1238998-1239017 None:intergenic 35.0%
CACTGTAATGAATACATGGT+AGG + chr3_1:1239122-1239141 Msa0343230:intron 35.0%
ATAAGTTCATCCTTTAACCC+TGG - chr3_1:1239194-1239213 None:intergenic 35.0%
! TTGAATCGTTAAGTGCTGTT+TGG + chr3_1:1239231-1239250 Msa0343230:three_prime_UTR 35.0%
!! GCTTTGTGCTGTTTGTAAAT+TGG + chr3_1:1239274-1239293 Msa0343230:three_prime_UTR 35.0%
TGCAGGTATAAGAACAAAAC+AGG - chr3_1:1239334-1239353 None:intergenic 35.0%
TAAAATTATGTGTTGGGTGC+AGG - chr3_1:1239351-1239370 None:intergenic 35.0%
CTAACTCAGGTAACTGGATA+GGG - chr3_1:1236587-1236606 None:intergenic 40.0%
ACTAACTCAGGTAACTGGAT+AGG - chr3_1:1236588-1236607 None:intergenic 40.0%
TTGCTTCAACAACCAAGACA+TGG - chr3_1:1236791-1236810 None:intergenic 40.0%
TGTCTTGGTTGTTGAAGCAA+AGG + chr3_1:1236791-1236810 Msa0343230:CDS 40.0%
GTCTTGGTTGTTGAAGCAAA+GGG + chr3_1:1236792-1236811 Msa0343230:CDS 40.0%
!! TCAATTTTGGGTAAAGGAGG+AGG - chr3_1:1236858-1236877 None:intergenic 40.0%
CGAATGAAGACGACGAATTT+AGG - chr3_1:1236894-1236913 None:intergenic 40.0%
ATTCGTCGTCTTCATTCGTA+TGG + chr3_1:1236896-1236915 Msa0343230:CDS 40.0%
CCACCAGAAACAATACTAAG+AGG - chr3_1:1236942-1236961 None:intergenic 40.0%
!! CCTCTTAGTATTGTTTCTGG+TGG + chr3_1:1236939-1236958 Msa0343230:CDS 40.0%
AGTGGTATGATTCTCGCTTA+GGG - chr3_1:1237207-1237226 None:intergenic 40.0%
TAGTGGTATGATTCTCGCTT+AGG - chr3_1:1237208-1237227 None:intergenic 40.0%
AATCAGCAACAATGGGCATT+TGG - chr3_1:1237233-1237252 None:intergenic 40.0%
! TTTGTAGGGTGCTCTCAAAT+AGG + chr3_1:1237462-1237481 Msa0343230:intron 40.0%
TTTGAGAGCCCTATAAAGTC+AGG + chr3_1:1237724-1237743 Msa0343230:intron 40.0%
TTGAGAGCCCTATAAAGTCA+GGG + chr3_1:1237725-1237744 Msa0343230:intron 40.0%
AAAGTCAGGGACGAATTTGA+TGG + chr3_1:1237738-1237757 Msa0343230:intron 40.0%
TGACTAACATCAATGTGACG+TGG + chr3_1:1237772-1237791 Msa0343230:intron 40.0%
AAGCAGTGAGTAACAAAGAC+AGG - chr3_1:1238062-1238081 None:intergenic 40.0%
ACAACACCGTGTACTAAAGT+CGG + chr3_1:1238130-1238149 Msa0343230:CDS 40.0%
TCGGCTACTGAATTCAGATA+TGG + chr3_1:1238149-1238168 Msa0343230:CDS 40.0%
TATGTCCCTAATGCGGTATA+AGG - chr3_1:1238399-1238418 None:intergenic 40.0%
AGTACAACATAGAAGAACCC+TGG + chr3_1:1238430-1238449 Msa0343230:intron 40.0%
GAGATGTAAAGGAGTCCTTT+GGG + chr3_1:1238980-1238999 Msa0343230:CDS 40.0%
AGATGTAAAGGAGTCCTTTG+GGG + chr3_1:1238981-1239000 Msa0343230:CDS 40.0%
TGAATCTTCCTCTGACTCAT+CGG - chr3_1:1239031-1239050 None:intergenic 40.0%
TGTGCTAATACCAGGGTTAA+AGG + chr3_1:1239181-1239200 Msa0343230:intron 40.0%
TCTCGGAGTTGTTGTGATGA+TGG - chr3_1:1236617-1236636 None:intergenic 45.0%
CATGCGTTTCGAGATTCTCT+CGG - chr3_1:1236634-1236653 None:intergenic 45.0%
ATCTCGAAACGCATGGAAGT+AGG + chr3_1:1236639-1236658 Msa0343230:exon 45.0%
!! GAGCTTGAACTTGATAGTGG+TGG - chr3_1:1236690-1236709 None:intergenic 45.0%
CTGGAGCTTGAACTTGATAG+TGG - chr3_1:1236693-1236712 None:intergenic 45.0%
CACTATCAAGTTCAAGCTCC+AGG + chr3_1:1236691-1236710 Msa0343230:CDS 45.0%
TCTGGGGAATTGTCTTGGAA+TGG - chr3_1:1236739-1236758 None:intergenic 45.0%
!! TGAGTTCTGGGGAATTGTCT+TGG - chr3_1:1236744-1236763 None:intergenic 45.0%
! TGATGTTGGCGTTGAGTTCT+GGG - chr3_1:1236756-1236775 None:intergenic 45.0%
CTTCAACAACCAAGACATGG+TGG - chr3_1:1236788-1236807 None:intergenic 45.0%
!! ATTTTGGGTAAAGGAGGAGG+AGG - chr3_1:1236855-1236874 None:intergenic 45.0%
GGCATTCCGAGAATTGAACT+CGG + chr3_1:1237170-1237189 Msa0343230:intron 45.0%
GCATTCCGAGAATTGAACTC+GGG + chr3_1:1237171-1237190 Msa0343230:intron 45.0%
ACAATGGGCATTTGGTCTAG+TGG - chr3_1:1237225-1237244 None:intergenic 45.0%
!! GAGAGCACCCTACAAAGTTA+AGG - chr3_1:1237458-1237477 None:intergenic 45.0%
AGTGCTTCACAGAGTCAAGA+GGG - chr3_1:1237643-1237662 None:intergenic 45.0%
TAGTGCTTCACAGAGTCAAG+AGG - chr3_1:1237644-1237663 None:intergenic 45.0%
! CAGTAGCCGACTTTAGTACA+CGG - chr3_1:1238139-1238158 None:intergenic 45.0%
GAAACTGTCTGTTAGGAACC+CGG + chr3_1:1238497-1238516 Msa0343230:intron 45.0%
AAACTGTCTGTTAGGAACCC+GGG + chr3_1:1238498-1238517 Msa0343230:intron 45.0%
TTAGGAACCCGGGAATTGAA+TGG + chr3_1:1238508-1238527 Msa0343230:intron 45.0%
ATTGTGAAGGGGAAAACCCT+TGG - chr3_1:1238588-1238607 None:intergenic 45.0%
GGAGATGTAAAGGAGTCCTT+TGG + chr3_1:1238979-1238998 Msa0343230:CDS 45.0%
! GATACTTTTCAGAGAGAGCG+AGG + chr3_1:1239531-1239550 Msa0343230:three_prime_UTR 45.0%
!!! TAATATTTTTAAATTTCTAA+TGG + chr3_1:1239145-1239164 Msa0343230:intron 5.0%
CGAGAGAATCTCGAAACGCA+TGG + chr3_1:1236632-1236651 Msa0343230:exon 50.0%
TGGAGAAGAGTGAGTCGTTG+TGG - chr3_1:1236719-1236738 None:intergenic 50.0%
! GATGTTGGCGTTGAGTTCTG+GGG - chr3_1:1236755-1236774 None:intergenic 50.0%
! GTGATGTTGGCGTTGAGTTC+TGG - chr3_1:1236757-1236776 None:intergenic 50.0%
CAACAACCAAGACATGGTGG+TGG - chr3_1:1236785-1236804 None:intergenic 50.0%
GAGGTCCCGAGTTCAATTCT+CGG - chr3_1:1237179-1237198 None:intergenic 50.0%
AGGAGAGAATCTCCACTCCA+AGG + chr3_1:1238568-1238587 Msa0343230:intron 50.0%
GGAGAGAATCTCCACTCCAA+GGG + chr3_1:1238569-1238588 Msa0343230:intron 50.0%
TGGTGTAGGAAGCTGCAAGT+TGG - chr3_1:1238917-1238936 None:intergenic 50.0%
TACTGCTACCGATGAGTCAG+AGG + chr3_1:1239020-1239039 Msa0343230:CDS 50.0%
GAGTGAGTCGTTGTGGAACC+TGG - chr3_1:1236712-1236731 None:intergenic 55.0%
!! CAACCAAGACATGGTGGTGG+TGG - chr3_1:1236782-1236801 None:intergenic 55.0%
ATTCTCGCTTAGGGTGCGAG+AGG - chr3_1:1237198-1237217 None:intergenic 55.0%
GAAGGGGAAAACCCTTGGAG+TGG - chr3_1:1238583-1238602 None:intergenic 55.0%
!! GGTGGTGGTGGTGGTGATGT+TGG - chr3_1:1236770-1236789 None:intergenic 60.0%
!! CCAAGACATGGTGGTGGTGG+TGG - chr3_1:1236779-1236798 None:intergenic 60.0%
CCACCACCACCACCATGTCT+TGG + chr3_1:1236776-1236795 Msa0343230:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1236530 1239661 1236530 ID=Msa0343230;Name=Msa0343230
chr3_1 mRNA 1236530 1239661 1236530 ID=Msa0343230-mRNA-1;Parent=Msa0343230;Name=Msa0343230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=121|1|1|1|0.75|0.6|5|503|229
chr3_1 exon 1236530 1237061 1236530 ID=Msa0343230-mRNA-1:exon:387;Parent=Msa0343230-mRNA-1
chr3_1 exon 1238098 1238184 1238098 ID=Msa0343230-mRNA-1:exon:388;Parent=Msa0343230-mRNA-1
chr3_1 exon 1238288 1238335 1238288 ID=Msa0343230-mRNA-1:exon:389;Parent=Msa0343230-mRNA-1
chr3_1 exon 1238925 1239104 1238925 ID=Msa0343230-mRNA-1:exon:390;Parent=Msa0343230-mRNA-1
chr3_1 exon 1239195 1239661 1239195 ID=Msa0343230-mRNA-1:exon:391;Parent=Msa0343230-mRNA-1
chr3_1 five_prime_UTR 1236530 1236650 1236530 ID=Msa0343230-mRNA-1:five_prime_utr;Parent=Msa0343230-mRNA-1
chr3_1 CDS 1236651 1237061 1236651 ID=Msa0343230-mRNA-1:cds;Parent=Msa0343230-mRNA-1
chr3_1 CDS 1238098 1238184 1238098 ID=Msa0343230-mRNA-1:cds;Parent=Msa0343230-mRNA-1
chr3_1 CDS 1238288 1238335 1238288 ID=Msa0343230-mRNA-1:cds;Parent=Msa0343230-mRNA-1
chr3_1 CDS 1238925 1239068 1238925 ID=Msa0343230-mRNA-1:cds;Parent=Msa0343230-mRNA-1
chr3_1 three_prime_UTR 1239069 1239104 1239069 ID=Msa0343230-mRNA-1:three_prime_utr;Parent=Msa0343230-mRNA-1
chr3_1 three_prime_UTR 1239195 1239661 1239195 ID=Msa0343230-mRNA-1:three_prime_utr;Parent=Msa0343230-mRNA-1
Gene Sequence

>Msa0343230

ATGGAAGTAGGAATGTCGTTGAACGCACTGATTCATCCACCACTATCAAGTTCAAGCTCCAGGTTCCACAACGACTCACTCTTCTCCATTCCAAGACAATTCCCCAGAACTCAACGCCAACATCACCACCACCACCACCATGTCTTGGTTGTTGAAGCAAAGGGTAAAAAAGGAATGATGTCTCGTCAATATCAACGTCAACCTCCTCCTCCTTTACCCAAAATTGAAGACGACGGTAATCCTAAATTCGTCGTCTTCATTCGTATGGCTAATGTTTATCTTTGGTATCCTCTTAGTATTGTTTCTGGTGGTACCACTGCTAAAATTATGGTTGCTGCTAAAGATAATTTTCTTGGCAAATTTATTTATAAGGATACTCTTGATCGAAATCTTGCTGCTGTTATCTACCGAGATGAGAAGGAGATACAGAAATCTGCATTCAAACAACACCGTGTACTAAAGTCGGCTACTGAATTCAGATATGGCTACAAACTTGTTGAGAATGGCAATGTAAAAGCTGCACTTTCTACCAGTGATGTTATTGAGCTTCCTACACCAGATAAACTAAAAACTGTAGCTGATAAAGTGAAAGACTTTTTCGGAGATGTAAAGGAGTCCTTTGGGGAAATAACATCGTTAGTTACTGCTACCGATGAGTCAGAGGAAGATTCAAAAGAAAAAACTAAGTGA

Protein sequence

>Msa0343230

MEVGMSLNALIHPPLSSSSSRFHNDSLFSIPRQFPRTQRQHHHHHHHVLVVEAKGKKGMMSRQYQRQPPPPLPKIEDDGNPKFVVFIRMANVYLWYPLSIVSGGTTAKIMVAAKDNFLGKFIYKDTLDRNLAAVIYRDEKEIQKSAFKQHRVLKSATEFRYGYKLVENGNVKAALSTSDVIELPTPDKLKTVADKVKDFFGDVKESFGEITSLVTATDESEEDSKEKTK*