Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171510 | sp|Q9ZVQ6|P2B10_ARATH | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.58e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171510 | G7I5M1 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 2.05e-132 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031580 | Msa0171510 | 0.943645 | 8.274055e-103 | -8.615850e-47 |
| Msa0034100 | Msa0171510 | -0.817814 | 2.712992e-52 | -8.615850e-47 |
| Msa0036550 | Msa0171510 | 0.820097 | 8.209233e-53 | -8.615850e-47 |
| Msa0046430 | Msa0171510 | 0.808792 | 2.601690e-50 | -8.615850e-47 |
| Msa0067750 | Msa0171510 | -0.800522 | 1.385622e-48 | -8.615850e-47 |
| Msa0078990 | Msa0171510 | 0.942847 | 3.475216e-102 | -8.615850e-47 |
| Msa0081290 | Msa0171510 | -0.801035 | 1.088870e-48 | -8.615850e-47 |
| Msa0081790 | Msa0171510 | -0.800238 | 1.582624e-48 | -8.615850e-47 |
| Msa0128110 | Msa0171510 | -0.813974 | 1.950506e-51 | -8.615850e-47 |
| Msa0139850 | Msa0171510 | 0.812250 | 4.658760e-51 | -8.615850e-47 |
| Msa0140870 | Msa0171510 | -0.804455 | 2.142740e-49 | -8.615850e-47 |
| Msa0165820 | Msa0171510 | -0.805562 | 1.257049e-49 | -8.615850e-47 |
| Msa0171510 | Msa0176600 | 0.809747 | 1.624060e-50 | -8.615850e-47 |
| Msa0171510 | Msa0197920 | 0.804168 | 2.459337e-49 | -8.615850e-47 |
| Msa0171510 | Msa0208710 | -0.811311 | 7.459511e-51 | -8.615850e-47 |
| Msa0171510 | Msa0211460 | 0.813717 | 2.222209e-51 | -8.615850e-47 |
| Msa0171510 | Msa0225070 | -0.811140 | 8.123509e-51 | -8.615850e-47 |
| Msa0171510 | Msa0328870 | 0.808925 | 2.437619e-50 | -8.615850e-47 |
| Msa0171510 | Msa0343230 | -0.803253 | 3.806670e-49 | -8.615850e-47 |
| Msa0171510 | Msa0358470 | 0.812111 | 4.996384e-51 | -8.615850e-47 |
| Msa0171510 | Msa0364030 | -0.802381 | 5.763598e-49 | -8.615850e-47 |
| Msa0171510 | Msa0375500 | 0.800782 | 1.226245e-48 | -8.615850e-47 |
| Msa0171510 | Msa0375550 | 0.821839 | 3.261760e-53 | -8.615850e-47 |
| Msa0171510 | Msa0403740 | -0.802162 | 6.392977e-49 | -8.615850e-47 |
| Msa0171510 | Msa0422230 | -0.804452 | 2.145982e-49 | -8.615850e-47 |
| Msa0171510 | Msa0456450 | -0.810033 | 1.409712e-50 | -8.615850e-47 |
| Msa0171510 | Msa0515930 | 0.800681 | 1.285717e-48 | -8.615850e-47 |
| Msa0171510 | Msa0527560 | 0.806810 | 6.865855e-50 | -8.615850e-47 |
| Msa0171510 | Msa0528830 | -0.801944 | 7.088318e-49 | -8.615850e-47 |
| Msa0171510 | Msa0538050 | -0.802613 | 5.163440e-49 | -8.615850e-47 |
| Msa0171510 | Msa0548420 | 0.816887 | 4.386329e-52 | -8.615850e-47 |
| Msa0171510 | Msa0582270 | -0.810325 | 1.219375e-50 | -8.615850e-47 |
| Msa0171510 | Msa0610300 | -0.800830 | 1.198956e-48 | -8.615850e-47 |
| Msa0171510 | Msa0614020 | -0.809247 | 2.079128e-50 | -8.615850e-47 |
| Msa0171510 | Msa0625900 | -0.806611 | 7.563833e-50 | -8.615850e-47 |
| Msa0171510 | Msa0632040 | -0.800132 | 1.663548e-48 | -8.615850e-47 |
| Msa0171510 | Msa0634900 | -0.814179 | 1.757796e-51 | -8.615850e-47 |
| Msa0171510 | Msa0663690 | -0.802778 | 4.772526e-49 | -8.615850e-47 |
| Msa0171510 | Msa0708380 | -0.805453 | 1.325368e-49 | -8.615850e-47 |
| Msa0171510 | Msa0733240 | -0.814996 | 1.159078e-51 | -8.615850e-47 |
| Msa0171510 | Msa0774360 | -0.805352 | 1.391462e-49 | -8.615850e-47 |
| Msa0171510 | Msa0812020 | -0.806285 | 8.859910e-50 | -8.615850e-47 |
| Msa0171510 | Msa0967900 | -0.813444 | 2.551179e-51 | -8.615850e-47 |
| Msa0171510 | Msa1070630 | -0.800149 | 1.650546e-48 | -8.615850e-47 |
| Msa0171510 | Msa1143060 | -0.803302 | 3.719644e-49 | -8.615850e-47 |
| Msa0171510 | Msa1251500 | 0.801494 | 8.767851e-49 | -8.615850e-47 |
| Msa0171510 | Msa1291070 | -0.802169 | 6.374283e-49 | -8.615850e-47 |
| Msa0171510 | Msa1342360 | -0.810594 | 1.066546e-50 | -8.615850e-47 |
| Msa0171510 | Msa1346220 | -0.802635 | 5.108119e-49 | -8.615850e-47 |
| Msa0171510 | Msa1346340 | -0.804127 | 2.507994e-49 | -8.615850e-47 |
| Msa0171510 | Msa1361580 | -0.803764 | 2.983657e-49 | -8.615850e-47 |
| Msa0171510 | Msa1375980 | -0.802022 | 6.831066e-49 | -8.615850e-47 |
| Msa0171510 | Msa1395720 | 0.822582 | 2.192532e-53 | -8.615850e-47 |
| Msa0171510 | Msa1400290 | -0.802008 | 6.878075e-49 | -8.615850e-47 |
| Msa0171510 | Msa1412740 | -0.803719 | 3.048140e-49 | -8.615850e-47 |
| Msa0171510 | Msa1425400 | 0.937360 | 3.934379e-98 | -8.615850e-47 |
| Msa0171510 | Msa1430250 | 0.810415 | 1.166173e-50 | -8.615850e-47 |
| Msa0171510 | Msa1462210 | -0.806428 | 8.265835e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171510 | MtrunA17_Chr1g0189751 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 3.95e-136 | 384 |
| Msa0171510 | MtrunA17_Chr1g0189721 | 72.659 | 267 | 41 | 2 | 1 | 237 | 1 | 265 | 3.46e-134 | 378 |
| Msa0171510 | MtrunA17_Chr1g0189611 | 64.444 | 270 | 58 | 4 | 1 | 237 | 1 | 265 | 2.19e-118 | 338 |
| Msa0171510 | MtrunA17_Chr1g0189671 | 58.123 | 277 | 77 | 4 | 1 | 240 | 1 | 275 | 1.02e-106 | 309 |
| Msa0171510 | MtrunA17_Chr1g0189821 | 60.073 | 273 | 72 | 4 | 1 | 240 | 1 | 269 | 9.68e-106 | 306 |
| Msa0171510 | MtrunA17_Chr1g0189621 | 60.223 | 269 | 70 | 5 | 1 | 237 | 1 | 264 | 1.25e-105 | 306 |
| Msa0171510 | MtrunA17_Chr1g0203281 | 58.993 | 278 | 73 | 4 | 1 | 240 | 1 | 275 | 5.79e-105 | 305 |
| Msa0171510 | MtrunA17_Chr1g0189641 | 53.791 | 277 | 90 | 3 | 1 | 240 | 1 | 276 | 3.26e-95 | 280 |
| Msa0171510 | MtrunA17_Chr1g0190071 | 53.497 | 286 | 85 | 5 | 1 | 240 | 1 | 284 | 1.33e-91 | 271 |
| Msa0171510 | MtrunA17_Chr1g0203331 | 58.367 | 245 | 60 | 3 | 15 | 218 | 1 | 244 | 7.97e-89 | 262 |
| Msa0171510 | MtrunA17_Chr3g0097191 | 54.815 | 270 | 80 | 7 | 4 | 240 | 10 | 270 | 1.41e-86 | 258 |
| Msa0171510 | MtrunA17_Chr1g0189661 | 52.128 | 282 | 92 | 6 | 1 | 240 | 1 | 281 | 1.43e-85 | 256 |
| Msa0171510 | MtrunA17_Chr1g0157451 | 49.129 | 287 | 98 | 6 | 1 | 240 | 1 | 286 | 2.22e-82 | 248 |
| Msa0171510 | MtrunA17_Chr3g0078331 | 48.525 | 305 | 86 | 6 | 4 | 240 | 17 | 318 | 4.18e-80 | 243 |
| Msa0171510 | MtrunA17_Chr1g0189711 | 50.181 | 277 | 96 | 7 | 1 | 237 | 1 | 275 | 7.59e-78 | 236 |
| Msa0171510 | MtrunA17_Chr1g0189781 | 48.519 | 270 | 99 | 5 | 4 | 237 | 8 | 273 | 9.87e-78 | 235 |
| Msa0171510 | MtrunA17_Chr1g0189541 | 62.304 | 191 | 62 | 4 | 47 | 237 | 4 | 184 | 1.99e-76 | 229 |
| Msa0171510 | MtrunA17_Chr7g0260801 | 50.000 | 270 | 94 | 8 | 1 | 237 | 13 | 274 | 8.24e-74 | 225 |
| Msa0171510 | MtrunA17_Chr3g0095261 | 49.301 | 286 | 87 | 10 | 4 | 240 | 10 | 286 | 6.48e-72 | 221 |
| Msa0171510 | MtrunA17_Chr1g0189591 | 43.624 | 298 | 102 | 7 | 3 | 237 | 12 | 306 | 4.36e-70 | 217 |
| Msa0171510 | MtrunA17_Chr1g0189701 | 47.260 | 292 | 93 | 9 | 1 | 237 | 32 | 317 | 4.53e-67 | 209 |
| Msa0171510 | MtrunA17_Chr2g0317291 | 57.143 | 161 | 67 | 1 | 74 | 234 | 54 | 212 | 4.49e-51 | 166 |
| Msa0171510 | MtrunA17_Chr1g0188311 | 61.194 | 134 | 36 | 1 | 98 | 215 | 22 | 155 | 1.11e-49 | 160 |
| Msa0171510 | MtrunA17_Chr1g0189651 | 56.707 | 164 | 58 | 4 | 74 | 237 | 29 | 179 | 1.05e-48 | 158 |
| Msa0171510 | MtrunA17_Chr7g0272091 | 36.972 | 284 | 128 | 8 | 2 | 238 | 5 | 284 | 3.24e-48 | 160 |
| Msa0171510 | MtrunA17_Chr1g0189571 | 43.128 | 211 | 85 | 6 | 56 | 237 | 1 | 205 | 1.23e-43 | 146 |
| Msa0171510 | MtrunA17_Chr1g0192371 | 34.643 | 280 | 135 | 9 | 2 | 237 | 6 | 281 | 6.62e-42 | 144 |
| Msa0171510 | MtrunA17_Chr7g0272101 | 33.969 | 262 | 134 | 7 | 7 | 237 | 4 | 257 | 8.23e-39 | 135 |
| Msa0171510 | MtrunA17_Chr1g0189771 | 45.399 | 163 | 55 | 2 | 4 | 132 | 12 | 174 | 7.56e-38 | 130 |
| Msa0171510 | MtrunA17_Chr3g0102081 | 59.091 | 110 | 43 | 1 | 90 | 199 | 16 | 123 | 2.23e-36 | 125 |
| Msa0171510 | MtrunA17_Chr4g0010881 | 31.179 | 263 | 120 | 8 | 7 | 237 | 4 | 237 | 2.13e-32 | 118 |
| Msa0171510 | MtrunA17_Chr1g0189631 | 55.963 | 109 | 32 | 2 | 115 | 209 | 1 | 107 | 5.10e-32 | 113 |
| Msa0171510 | MtrunA17_Chr1g0189531 | 72.000 | 75 | 21 | 0 | 1 | 75 | 64 | 138 | 4.65e-29 | 109 |
| Msa0171510 | MtrunA17_Chr3g0143881 | 44.715 | 123 | 52 | 2 | 115 | 237 | 1 | 107 | 3.45e-27 | 100 |
| Msa0171510 | MtrunA17_Chr2g0300961 | 61.538 | 78 | 28 | 2 | 1 | 76 | 1 | 78 | 1.92e-22 | 89.4 |
| Msa0171510 | MtrunA17_Chr7g0260811 | 41.892 | 148 | 52 | 5 | 38 | 155 | 19 | 162 | 1.58e-18 | 80.1 |
| Msa0171510 | MtrunA17_Chr1g0189761 | 49.462 | 93 | 44 | 2 | 145 | 237 | 5 | 94 | 3.54e-16 | 71.6 |
| Msa0171510 | MtrunA17_Chr4g0043591 | 27.811 | 169 | 99 | 5 | 71 | 237 | 143 | 290 | 2.30e-15 | 73.6 |
| Msa0171510 | MtrunA17_Chr5g0397981 | 29.586 | 169 | 86 | 5 | 2 | 139 | 33 | 199 | 8.62e-14 | 69.3 |
| Msa0171510 | MtrunA17_Chr1g0203751 | 30.872 | 149 | 72 | 2 | 2 | 119 | 26 | 174 | 8.41e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0171510 | AT2G02360.1 | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.62e-59 | 189 |
| Msa0171510 | AT2G02340.1 | 36.296 | 270 | 137 | 4 | 1 | 236 | 33 | 301 | 1.37e-53 | 175 |
| Msa0171510 | AT1G80110.1 | 38.636 | 264 | 122 | 7 | 4 | 236 | 1 | 255 | 5.76e-50 | 164 |
| Msa0171510 | AT2G02240.1 | 37.023 | 262 | 124 | 7 | 7 | 236 | 64 | 316 | 2.88e-48 | 162 |
| Msa0171510 | AT2G02250.1 | 36.090 | 266 | 128 | 7 | 4 | 236 | 47 | 303 | 4.18e-47 | 158 |
| Msa0171510 | AT1G09155.1 | 37.500 | 280 | 124 | 8 | 7 | 237 | 3 | 280 | 7.62e-47 | 157 |
| Msa0171510 | AT2G02350.2 | 35.206 | 267 | 131 | 8 | 4 | 236 | 24 | 282 | 1.90e-42 | 146 |
| Msa0171510 | AT1G56250.1 | 36.786 | 280 | 126 | 8 | 7 | 237 | 4 | 281 | 5.09e-42 | 144 |
| Msa0171510 | AT1G56240.1 | 36.201 | 279 | 127 | 8 | 7 | 236 | 4 | 280 | 1.34e-41 | 143 |
| Msa0171510 | AT2G02230.1 | 30.164 | 305 | 139 | 6 | 7 | 240 | 35 | 336 | 1.23e-40 | 142 |
| Msa0171510 | AT2G02320.1 | 33.962 | 265 | 133 | 9 | 6 | 236 | 42 | 298 | 8.75e-38 | 134 |
| Msa0171510 | AT2G02310.1 | 29.104 | 268 | 148 | 7 | 4 | 237 | 45 | 304 | 1.61e-32 | 120 |
| Msa0171510 | AT2G02300.1 | 31.734 | 271 | 125 | 7 | 4 | 237 | 34 | 281 | 5.39e-32 | 118 |
| Msa0171510 | AT2G02350.1 | 36.913 | 149 | 86 | 4 | 91 | 236 | 22 | 165 | 5.39e-26 | 100 |
| Msa0171510 | AT5G24560.1 | 29.915 | 234 | 116 | 7 | 6 | 237 | 5 | 192 | 4.48e-25 | 98.2 |
| Msa0171510 | AT3G53000.1 | 25.632 | 277 | 149 | 11 | 4 | 236 | 21 | 284 | 4.55e-16 | 76.3 |
| Msa0171510 | AT1G12710.1 | 32.639 | 144 | 63 | 3 | 6 | 117 | 30 | 171 | 1.29e-13 | 69.3 |
| Msa0171510 | AT1G63090.1 | 29.268 | 164 | 80 | 4 | 4 | 135 | 26 | 185 | 5.84e-13 | 67.4 |
| Msa0171510 | AT3G61060.2 | 26.994 | 163 | 83 | 4 | 6 | 135 | 27 | 186 | 8.10e-13 | 67.0 |
| Msa0171510 | AT3G61060.1 | 28.834 | 163 | 79 | 5 | 6 | 135 | 27 | 185 | 1.01e-12 | 66.6 |
| Msa0171510 | AT4G19850.3 | 26.816 | 179 | 101 | 7 | 68 | 237 | 61 | 218 | 8.98e-12 | 63.2 |
| Msa0171510 | AT4G19850.1 | 26.816 | 179 | 101 | 7 | 68 | 237 | 19 | 176 | 9.94e-12 | 62.0 |
| Msa0171510 | AT1G33920.1 | 24.022 | 179 | 109 | 4 | 65 | 237 | 7 | 164 | 1.80e-11 | 61.2 |
| Msa0171510 | AT4G19840.1 | 28.824 | 170 | 98 | 8 | 71 | 237 | 96 | 245 | 3.06e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATATTGAGTATT+TGG | 0.137691 | 1_4:-56278715 | None:intergenic |
| CTTATTGTTGTTCAGTATAC+TGG | 0.163118 | 1_4:+56279206 | Msa0171510:three_prime_UTR |
| TTCAAAATGATTGATGCTTA+TGG | 0.231867 | 1_4:+56278745 | Msa0171510:CDS |
| CTAGATCTCTTGCCATTGTT+TGG | 0.245415 | 1_4:+56276170 | Msa0171510:intron |
| TAGATCTCTTGCCATTGTTT+GGG | 0.268063 | 1_4:+56276171 | Msa0171510:intron |
| CTGAACTATGCAAGGGGTCT+TGG | 0.296858 | 1_4:+56279082 | Msa0171510:three_prime_UTR |
| TCAACAAGCTTAGCGACTTC+AGG | 0.333696 | 1_4:-56278643 | None:intergenic |
| AAGCTGCATATTGAGTATTT+GGG | 0.334659 | 1_4:-56278714 | None:intergenic |
| TGCCAACATTCCTACCAAAA+AGG | 0.349990 | 1_4:+56275180 | Msa0171510:CDS |
| TGATTTCTATGCCTGATTCC+AGG | 0.379925 | 1_4:+56276218 | Msa0171510:CDS |
| TGAGGATTACCTTCCACATT+TGG | 0.380026 | 1_4:-56278844 | None:intergenic |
| ATATTAGTATGTTGAAAAGT+TGG | 0.382553 | 1_4:-56279135 | None:intergenic |
| GAGAGTCTGCCGGCGTCAAC+TGG | 0.384737 | 1_4:-56275055 | None:intergenic |
| CCTCCAACTCCGACGCTGTA+TGG | 0.389215 | 1_4:+56275104 | Msa0171510:CDS |
| TGAACTATGCAAGGGGTCTT+GGG | 0.402498 | 1_4:+56279083 | Msa0171510:three_prime_UTR |
| TTAAGAGCTAACCTGGAATC+AGG | 0.410946 | 1_4:-56276229 | None:intergenic |
| TGGATATCTTTGTTGTGTTG+TGG | 0.414878 | 1_4:+56279231 | Msa0171510:three_prime_UTR |
| GACAGAGATTCAGGATTTGC+CGG | 0.423087 | 1_4:+56274997 | Msa0171510:CDS |
| TAGTACTAAAATTGTCTGTT+TGG | 0.434481 | 1_4:+56278819 | Msa0171510:CDS |
| CTAAGCTTGTTGATGTGTGT+TGG | 0.438622 | 1_4:+56278653 | Msa0171510:CDS |
| TGGAGTTGTACGAGAGACTA+TGG | 0.443442 | 1_4:-56275035 | None:intergenic |
| ATCACAATATATTATATAGT+TGG | 0.445877 | 1_4:-56279284 | None:intergenic |
| GTGTGTTGGCTTGAAATTCA+TGG | 0.446205 | 1_4:+56278667 | Msa0171510:CDS |
| ATGCAAGGGGTCTTGGGTCG+TGG | 0.466084 | 1_4:+56279089 | Msa0171510:three_prime_UTR |
| GTTGGTTAATTGTTATACTT+AGG | 0.467370 | 1_4:-56279054 | None:intergenic |
| CCATACAGCGTCGGAGTTGG+AGG | 0.469088 | 1_4:-56275104 | None:intergenic |
| TCATCTGTATCAGATTCATC+TGG | 0.472901 | 1_4:-56278975 | None:intergenic |
| CAGCCGCACAACACAGTAGT+AGG | 0.476209 | 1_4:+56278865 | Msa0171510:CDS |
| ATTCCATACAGCGTCGGAGT+TGG | 0.478886 | 1_4:-56275107 | None:intergenic |
| CAACAAGCTTAGCGACTTCA+GGG | 0.483357 | 1_4:-56278642 | None:intergenic |
| AAGAGAGGTCTCGTTGTTGA+AGG | 0.488523 | 1_4:+56279018 | Msa0171510:CDS |
| ATGGTGGCAATGCATCCTTC+CGG | 0.489320 | 1_4:-56275016 | None:intergenic |
| TGTTCTGCGGATTTATCAGT+TGG | 0.493868 | 1_4:+56278778 | Msa0171510:CDS |
| CATATTGAGTATTTGGGGAC+AGG | 0.495017 | 1_4:-56278708 | None:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.496484 | 1_4:+56278915 | Msa0171510:CDS |
| TTGTTGAAGGAATTGAAGTC+AGG | 0.499615 | 1_4:+56279031 | Msa0171510:CDS |
| TGGAACAATCAACAGACATC+AGG | 0.499719 | 1_4:-56279264 | None:intergenic |
| CGTCCTACTGTGAGAAGCGA+TGG | 0.500006 | 1_4:+56278895 | Msa0171510:CDS |
| ACTACTGTGTTGTGCGGCTG+AGG | 0.503355 | 1_4:-56278862 | None:intergenic |
| ATGGGTGAGTTCTTCAATCC+AGG | 0.510010 | 1_4:+56278934 | Msa0171510:CDS |
| GTAGGAATGTTGGCAAGGGA+AGG | 0.521816 | 1_4:-56275172 | None:intergenic |
| TTATTGTTGTTCAGTATACT+GGG | 0.530310 | 1_4:+56279207 | Msa0171510:three_prime_UTR |
| GGGGTGATGATAGACGCTAT+TGG | 0.532370 | 1_4:+56276191 | Msa0171510:CDS |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.533715 | 1_4:+56278916 | Msa0171510:CDS |
| AACATTCACTGAACTATGCA+AGG | 0.541083 | 1_4:+56279074 | Msa0171510:three_prime_UTR |
| TGAGTGGTGGTCGTGGTGGT+TGG | 0.545093 | 1_4:+56278995 | Msa0171510:CDS |
| TTGCATAGTTCAGTGAATGT+TGG | 0.553784 | 1_4:-56279072 | None:intergenic |
| TGTTGTTCAGTATACTGGGA+TGG | 0.556183 | 1_4:+56279211 | Msa0171510:three_prime_UTR |
| CGTCGGAGTTGGAGGCTGAT+CGG | 0.556747 | 1_4:-56275096 | None:intergenic |
| GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | 1_4:+56275001 | Msa0171510:CDS |
| AGATCTCTTGCCATTGTTTG+GGG | 0.561132 | 1_4:+56276172 | Msa0171510:intron |
| GGTCGTGGTGGTTGGAAGAG+AGG | 0.562312 | 1_4:+56279003 | Msa0171510:CDS |
| GATTTATCAGTTGGTGTCGA+AGG | 0.564414 | 1_4:+56278787 | Msa0171510:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.573841 | 1_4:+56278903 | Msa0171510:CDS |
| GGAAACGACGGAGAGTCTGC+CGG | 0.576478 | 1_4:-56275065 | None:intergenic |
| ATGATAGATGAGATGTCAGA+AGG | 0.589136 | 1_4:-56275139 | None:intergenic |
| GGAGGCTGATCGGAAAGTGT+TGG | 0.593620 | 1_4:-56275086 | None:intergenic |
| TTATCAGTTGGTGTCGAAGG+TGG | 0.596520 | 1_4:+56278790 | Msa0171510:CDS |
| AGCTGCATATTGAGTATTTG+GGG | 0.601395 | 1_4:-56278713 | None:intergenic |
| ACATTCACTGAACTATGCAA+GGG | 0.606445 | 1_4:+56279075 | Msa0171510:three_prime_UTR |
| TTTGGTAGGAATGTTGGCAA+GGG | 0.607331 | 1_4:-56275176 | None:intergenic |
| ATACAGATGAGTGGTGGTCG+TGG | 0.619250 | 1_4:+56278988 | Msa0171510:CDS |
| TGGATTTCAGAACTGTTCTG+CGG | 0.620211 | 1_4:+56278765 | Msa0171510:CDS |
| TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | 1_4:+56278831 | Msa0171510:CDS |
| TCTATCATCACCCCAAACAA+TGG | 0.627087 | 1_4:-56276182 | None:intergenic |
| AATCAACAGACATCAGGAAG+AGG | 0.628326 | 1_4:-56279258 | None:intergenic |
| AGTATTTGGGGACAGGACGA+TGG | 0.644084 | 1_4:-56278701 | None:intergenic |
| GTCCTACTGTGAGAAGCGAT+GGG | 0.647735 | 1_4:+56278896 | Msa0171510:CDS |
| CACCCATCGCTTCTCACAGT+AGG | 0.650219 | 1_4:-56278898 | None:intergenic |
| CAGATGAGTGGTGGTCGTGG+TGG | 0.655384 | 1_4:+56278991 | Msa0171510:CDS |
| TCGGAAAGTGTTGGAAACGA+CGG | 0.666718 | 1_4:-56275077 | None:intergenic |
| CATTCACTGAACTATGCAAG+GGG | 0.671001 | 1_4:+56279076 | Msa0171510:three_prime_UTR |
| AATCCTACTACTGTGTTGTG+CGG | 0.681890 | 1_4:-56278868 | None:intergenic |
| AAAACGATTCCATACAGCGT+CGG | 0.682477 | 1_4:-56275113 | None:intergenic |
| TGTTTGGATCCAAATGTGGA+AGG | 0.696224 | 1_4:+56278835 | Msa0171510:CDS |
| CTACTGTGAGAAGCGATGGG+TGG | 0.696678 | 1_4:+56278899 | Msa0171510:CDS |
| CGTACAACTCCAGTTGACGC+CGG | 0.721519 | 1_4:+56275046 | Msa0171510:CDS |
| ATGAATCTGATACAGATGAG+TGG | 0.742711 | 1_4:+56278979 | Msa0171510:CDS |
| AATCTGATACAGATGAGTGG+TGG | 0.745247 | 1_4:+56278982 | Msa0171510:CDS |
| AGTTGTACGAGAGACTATGG+TGG | 0.755358 | 1_4:-56275032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAGAAAAATAAAAAA+TGG | - | chr1_4:56276680-56276699 | None:intergenic | 10.0% |
| !!! | ATTTTGAGAAAAATAAAAAT+TGG | - | chr1_4:56277493-56277512 | None:intergenic | 10.0% |
| !!! | TGACAAATATATTTTTAAAG+GGG | - | chr1_4:56275994-56276013 | None:intergenic | 15.0% |
| !!! | GTGACAAATATATTTTTAAA+GGG | - | chr1_4:56275995-56276014 | None:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | + | chr1_4:56276611-56276630 | Msa0171510:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | - | chr1_4:56276721-56276740 | None:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | - | chr1_4:56276746-56276765 | None:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | + | chr1_4:56276611-56276630 | Msa0171510:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | - | chr1_4:56276721-56276740 | None:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | - | chr1_4:56276746-56276765 | None:intergenic | 15.0% |
| !!! | ATTAATTTTAACTTGAACAA+AGG | - | chr1_4:56278397-56278416 | None:intergenic | 15.0% |
| !! | ATCACAATATATTATATAGT+TGG | - | chr1_4:56279287-56279306 | None:intergenic | 15.0% |
| !!! | GATTTTTTAAGATGTTTAGT+TGG | + | chr1_4:56275291-56275310 | Msa0171510:intron | 20.0% |
| !! | AACACCAAATATGAAATATT+TGG | + | chr1_4:56275318-56275337 | Msa0171510:intron | 20.0% |
| !! | TCAACCAAATATTTCATATT+TGG | - | chr1_4:56275325-56275344 | None:intergenic | 20.0% |
| !! | TCAGTTTGTAATAATAACAA+TGG | + | chr1_4:56275654-56275673 | Msa0171510:intron | 20.0% |
| !! | CAGTTTGTAATAATAACAAT+GGG | + | chr1_4:56275655-56275674 | Msa0171510:intron | 20.0% |
| !!! | GACAAATATATTTTTAAAGG+GGG | - | chr1_4:56275993-56276012 | None:intergenic | 20.0% |
| !!! | GGTGACAAATATATTTTTAA+AGG | - | chr1_4:56275996-56276015 | None:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | + | chr1_4:56276276-56276295 | Msa0171510:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | - | chr1_4:56276549-56276568 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | - | chr1_4:56276550-56276569 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | + | chr1_4:56276612-56276631 | Msa0171510:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | chr1_4:56276839-56276858 | None:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | + | chr1_4:56276276-56276295 | Msa0171510:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | - | chr1_4:56276549-56276568 | None:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | - | chr1_4:56276550-56276569 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | + | chr1_4:56276612-56276631 | Msa0171510:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | - | chr1_4:56276839-56276858 | None:intergenic | 20.0% |
| !! | CATTCAAAAATAAATAGGTT+CGG | - | chr1_4:56278237-56278256 | None:intergenic | 20.0% |
| !! | TGATGCATTCAAAAATAAAT+AGG | - | chr1_4:56278242-56278261 | None:intergenic | 20.0% |
| !! | GGTCTGATATTTAAAAAATT+TGG | - | chr1_4:56278270-56278289 | None:intergenic | 20.0% |
| !! | TTGTAAAGTAACAAACAAAT+TGG | - | chr1_4:56278291-56278310 | None:intergenic | 20.0% |
| !! | ATATTAGTATGTTGAAAAGT+TGG | - | chr1_4:56279138-56279157 | None:intergenic | 20.0% |
| !!! | TATTTTACAAAGAAAGAGAT+TGG | - | chr1_4:56279168-56279187 | None:intergenic | 20.0% |
| ! | AAATAATTCGAAGTTGCAAT+TGG | + | chr1_4:56275466-56275485 | Msa0171510:intron | 25.0% |
| ! | TTGTAATAATAACAATGGGT+TGG | + | chr1_4:56275659-56275678 | Msa0171510:intron | 25.0% |
| ! | TTAAATTGCAGGAATGTAAA+GGG | - | chr1_4:56275769-56275788 | None:intergenic | 25.0% |
| ! | ATTAAATTGCAGGAATGTAA+AGG | - | chr1_4:56275770-56275789 | None:intergenic | 25.0% |
| ! | GAACATTGATATTAAATTGC+AGG | - | chr1_4:56275780-56275799 | None:intergenic | 25.0% |
| ! | AGATGAAAAGGAAAAGAAAA+AGG | - | chr1_4:56275815-56275834 | None:intergenic | 25.0% |
| !!! | AACTTGTTATTACAAGATGT+TGG | + | chr1_4:56275897-56275916 | Msa0171510:intron | 25.0% |
| ! | GAGTTTACATTACCAAAAAT+CGG | + | chr1_4:56276069-56276088 | Msa0171510:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr1_4:56276787-56276806 | Msa0171510:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | - | chr1_4:56276791-56276810 | None:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | + | chr1_4:56276888-56276907 | Msa0171510:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | - | chr1_4:56276965-56276984 | None:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | + | chr1_4:56276964-56276983 | Msa0171510:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | - | chr1_4:56276977-56276996 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr1_4:56276787-56276806 | Msa0171510:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | - | chr1_4:56276791-56276810 | None:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | + | chr1_4:56276888-56276907 | Msa0171510:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | - | chr1_4:56276965-56276984 | None:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | + | chr1_4:56276964-56276983 | Msa0171510:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | - | chr1_4:56276977-56276996 | None:intergenic | 25.0% |
| !!! | TTTTTTGATCCTAATTGTTG+CGG | + | chr1_4:56278208-56278227 | Msa0171510:intron | 25.0% |
| !!! | TTTTAACTTGAACAAAGGAA+TGG | - | chr1_4:56278392-56278411 | None:intergenic | 25.0% |
| ! | GTACTCGACAAATAAAATAA+TGG | - | chr1_4:56278451-56278470 | None:intergenic | 25.0% |
| ! | TGCAAAGATTAGAAGATAAT+GGG | - | chr1_4:56278594-56278613 | None:intergenic | 25.0% |
| ! | ATGCAAAGATTAGAAGATAA+TGG | - | chr1_4:56278595-56278614 | None:intergenic | 25.0% |
| ! | TTCAAAATGATTGATGCTTA+TGG | + | chr1_4:56278745-56278764 | Msa0171510:CDS | 25.0% |
| ! | TAGTACTAAAATTGTCTGTT+TGG | + | chr1_4:56278819-56278838 | Msa0171510:CDS | 25.0% |
| ! | GTTGGTTAATTGTTATACTT+AGG | - | chr1_4:56279057-56279076 | None:intergenic | 25.0% |
| !! | TTATTGTTGTTCAGTATACT+GGG | + | chr1_4:56279207-56279226 | Msa0171510:three_prime_UTR | 25.0% |
| CATCATCGATCATGATAAAA+AGG | + | chr1_4:56275234-56275253 | Msa0171510:intron | 30.0% | |
| TCATTTCAACAATAAGCCTT+AGG | - | chr1_4:56275273-56275292 | None:intergenic | 30.0% | |
| ! | TCATGATTATGTTTTCGACA+AGG | + | chr1_4:56275347-56275366 | Msa0171510:intron | 30.0% |
| ! | GAATTATTTCTCCTTGTCTT+TGG | - | chr1_4:56275455-56275474 | None:intergenic | 30.0% |
| ! | AAGTTATTTCCTAGTGTCTT+AGG | + | chr1_4:56275553-56275572 | Msa0171510:intron | 30.0% |
| CTATAATTTCCTAAGACACT+AGG | - | chr1_4:56275565-56275584 | None:intergenic | 30.0% | |
| CTAGTGTCTTAGGAAATTAT+AGG | + | chr1_4:56275563-56275582 | Msa0171510:intron | 30.0% | |
| !! | CTACTTTTAATATAGACCGT+AGG | + | chr1_4:56275595-56275614 | Msa0171510:intron | 30.0% |
| AAAACTACCACTAAATCCTA+CGG | - | chr1_4:56275614-56275633 | None:intergenic | 30.0% | |
| AGAAGAAAGAGAAGATGAAA+AGG | - | chr1_4:56275827-56275846 | None:intergenic | 30.0% | |
| TGTAATAACAAGTTGTCTCA+TGG | - | chr1_4:56275891-56275910 | None:intergenic | 30.0% | |
| TTTATGTCCTAAACCATTGA+TGG | + | chr1_4:56276027-56276046 | Msa0171510:intron | 30.0% | |
| !! | TGAAATGAAGAGCATTCAAT+TGG | + | chr1_4:56276111-56276130 | Msa0171510:intron | 30.0% |
| AGAAAATTTAAGAGCTAACC+TGG | - | chr1_4:56276239-56276258 | None:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | + | chr1_4:56276289-56276308 | Msa0171510:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | + | chr1_4:56276290-56276309 | Msa0171510:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | + | chr1_4:56276314-56276333 | Msa0171510:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | + | chr1_4:56276380-56276399 | Msa0171510:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | + | chr1_4:56276416-56276435 | Msa0171510:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | + | chr1_4:56276499-56276518 | Msa0171510:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | - | chr1_4:56276655-56276674 | None:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | - | chr1_4:56276876-56276895 | None:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | + | chr1_4:56276892-56276911 | Msa0171510:intron | 30.0% | |
| TAGGCTTGAATGATTCTATT+TGG | + | chr1_4:56276983-56277002 | Msa0171510:intron | 30.0% | |
| AGGCTTGAATGATTCTATTT+GGG | + | chr1_4:56276984-56277003 | Msa0171510:intron | 30.0% | |
| AGAAAATTTAAGAGCTAACC+TGG | - | chr1_4:56276239-56276258 | None:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | + | chr1_4:56276289-56276308 | Msa0171510:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | + | chr1_4:56276290-56276309 | Msa0171510:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | + | chr1_4:56276314-56276333 | Msa0171510:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | + | chr1_4:56276380-56276399 | Msa0171510:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | + | chr1_4:56276416-56276435 | Msa0171510:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | + | chr1_4:56276499-56276518 | Msa0171510:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | - | chr1_4:56276655-56276674 | None:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | - | chr1_4:56276876-56276895 | None:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | + | chr1_4:56276892-56276911 | Msa0171510:intron | 30.0% | |
| ATAATCATTCCTCACTAACT+TGG | - | chr1_4:56277940-56277959 | None:intergenic | 30.0% | |
| AACAAGTGCTTGCAAAAATT+TGG | + | chr1_4:56278007-56278026 | Msa0171510:intron | 30.0% | |
| ATTCCAAATTCTAAGTCACA+GGG | - | chr1_4:56278039-56278058 | None:intergenic | 30.0% | |
| GCAACAATTAGGATCAAAAA+AGG | - | chr1_4:56278209-56278228 | None:intergenic | 30.0% | |
| !! | GTTATTTCTACACATGTTCA+TGG | + | chr1_4:56278340-56278359 | Msa0171510:intron | 30.0% |
| GCAAAGATTAGAAGATAATG+GGG | - | chr1_4:56278593-56278612 | None:intergenic | 30.0% | |
| ! | CATCTTTTGTGTACTACTTT+TGG | + | chr1_4:56278612-56278631 | Msa0171510:intron | 30.0% |
| AAGCTGCATATTGAGTATTT+GGG | - | chr1_4:56278717-56278736 | None:intergenic | 30.0% | |
| TAAGCTGCATATTGAGTATT+TGG | - | chr1_4:56278718-56278737 | None:intergenic | 30.0% | |
| ! | CTTATTGTTGTTCAGTATAC+TGG | + | chr1_4:56279206-56279225 | Msa0171510:three_prime_UTR | 30.0% |
| ATGATAGATGAGATGTCAGA+AGG | - | chr1_4:56275142-56275161 | None:intergenic | 35.0% | |
| !! | ATCCTTTTTGGTAGGAATGT+TGG | - | chr1_4:56275185-56275204 | None:intergenic | 35.0% |
| !! | AGATAGAGATCCTTTTTGGT+AGG | - | chr1_4:56275193-56275212 | None:intergenic | 35.0% |
| ! | AGCAAGATAGAGATCCTTTT+TGG | - | chr1_4:56275197-56275216 | None:intergenic | 35.0% |
| TATCATGATCGATGATGAGA+GGG | - | chr1_4:56275231-56275250 | None:intergenic | 35.0% | |
| TTATCATGATCGATGATGAG+AGG | - | chr1_4:56275232-56275251 | None:intergenic | 35.0% | |
| CATCGATCATGATAAAAAGG+TGG | + | chr1_4:56275237-56275256 | Msa0171510:intron | 35.0% | |
| TTTACTAGTGTCTTAGTGCA+TGG | + | chr1_4:56275530-56275549 | Msa0171510:intron | 35.0% | |
| ATATAGACCGTAGGATTTAG+TGG | + | chr1_4:56275604-56275623 | Msa0171510:intron | 35.0% | |
| !!! | TAGTGGTAGTTTTTTCTACG+AGG | + | chr1_4:56275621-56275640 | Msa0171510:intron | 35.0% |
| ATGGTATCCATCAATGGTTT+AGG | - | chr1_4:56276037-56276056 | None:intergenic | 35.0% | |
| TAAACTCCATTATCCATCGA+TGG | - | chr1_4:56276056-56276075 | None:intergenic | 35.0% | |
| !!! | CAACTGTTTACACCGATTTT+TGG | - | chr1_4:56276084-56276103 | None:intergenic | 35.0% |
| CAAAAATCGGTGTAAACAGT+TGG | + | chr1_4:56276082-56276101 | Msa0171510:intron | 35.0% | |
| ATTCAATTGGAGAGAAAGAG+TGG | + | chr1_4:56276124-56276143 | Msa0171510:intron | 35.0% | |
| TAGATCTCTTGCCATTGTTT+GGG | + | chr1_4:56276171-56276190 | Msa0171510:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | + | chr1_4:56276291-56276310 | Msa0171510:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | - | chr1_4:56276340-56276359 | None:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | - | chr1_4:56276350-56276369 | None:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | + | chr1_4:56276349-56276368 | Msa0171510:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | - | chr1_4:56276433-56276452 | None:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | + | chr1_4:56276479-56276498 | Msa0171510:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | - | chr1_4:56276651-56276670 | None:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | + | chr1_4:56276891-56276910 | Msa0171510:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | - | chr1_4:56276961-56276980 | None:intergenic | 35.0% | |
| GGCTTGAATGATTCTATTTG+GGG | + | chr1_4:56276985-56277004 | Msa0171510:intron | 35.0% | |
| TGATTTCTATGCATGATTCC+AGG | + | chr1_4:56277031-56277050 | Msa0171510:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | + | chr1_4:56276291-56276310 | Msa0171510:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | - | chr1_4:56276340-56276359 | None:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | - | chr1_4:56276350-56276369 | None:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | + | chr1_4:56276349-56276368 | Msa0171510:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | - | chr1_4:56276433-56276452 | None:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | + | chr1_4:56276479-56276498 | Msa0171510:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | - | chr1_4:56276651-56276670 | None:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | + | chr1_4:56276891-56276910 | Msa0171510:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | - | chr1_4:56276961-56276980 | None:intergenic | 35.0% | |
| CAGTAATTGATCGCTAACAT+GGG | - | chr1_4:56277820-56277839 | None:intergenic | 35.0% | |
| ACAGTAATTGATCGCTAACA+TGG | - | chr1_4:56277821-56277840 | None:intergenic | 35.0% | |
| ! | TTACTGTTGATGAGTTCTCT+TGG | + | chr1_4:56277834-56277853 | Msa0171510:intron | 35.0% |
| ! | TACTGTTGATGAGTTCTCTT+GGG | + | chr1_4:56277835-56277854 | Msa0171510:intron | 35.0% |
| TCTACTAATCCAAGTTAGTG+AGG | + | chr1_4:56277928-56277947 | Msa0171510:intron | 35.0% | |
| GCACTTGTTTGACTGAATTT+GGG | - | chr1_4:56277996-56278015 | None:intergenic | 35.0% | |
| AGCACTTGTTTGACTGAATT+TGG | - | chr1_4:56277997-56278016 | None:intergenic | 35.0% | |
| GATTCCAAATTCTAAGTCAC+AGG | - | chr1_4:56278040-56278059 | None:intergenic | 35.0% | |
| GATACTTAGGTGAAGTGATA+TGG | - | chr1_4:56278070-56278089 | None:intergenic | 35.0% | |
| GATATGTGTTGAGGATACTT+AGG | - | chr1_4:56278083-56278102 | None:intergenic | 35.0% | |
| CTTGGATGCAAAAGATAGTT+GGG | - | chr1_4:56278117-56278136 | None:intergenic | 35.0% | |
| ACTTGGATGCAAAAGATAGT+TGG | - | chr1_4:56278118-56278137 | None:intergenic | 35.0% | |
| TGTCGAGTACTTCATCATTA+AGG | + | chr1_4:56278461-56278480 | Msa0171510:intron | 35.0% | |
| !! | AGATTAGAAGATAATGGGGA+AGG | - | chr1_4:56278589-56278608 | None:intergenic | 35.0% |
| !! | TTTGTGTACTACTTTTGGAC+AGG | + | chr1_4:56278617-56278636 | Msa0171510:intron | 35.0% |
| AGCTGCATATTGAGTATTTG+GGG | - | chr1_4:56278716-56278735 | None:intergenic | 35.0% | |
| !! | AGACAATTTTAGTACTACGC+TGG | - | chr1_4:56278816-56278835 | None:intergenic | 35.0% |
| ! | ACTCTTTCATTTTCTATGCC+TGG | - | chr1_4:56278955-56278974 | None:intergenic | 35.0% |
| TCATCTGTATCAGATTCATC+TGG | - | chr1_4:56278978-56278997 | None:intergenic | 35.0% | |
| ATGAATCTGATACAGATGAG+TGG | + | chr1_4:56278979-56278998 | Msa0171510:CDS | 35.0% | |
| TTGTTGAAGGAATTGAAGTC+AGG | + | chr1_4:56279031-56279050 | Msa0171510:CDS | 35.0% | |
| TTGCATAGTTCAGTGAATGT+TGG | - | chr1_4:56279075-56279094 | None:intergenic | 35.0% | |
| AACATTCACTGAACTATGCA+AGG | + | chr1_4:56279074-56279093 | Msa0171510:three_prime_UTR | 35.0% | |
| ACATTCACTGAACTATGCAA+GGG | + | chr1_4:56279075-56279094 | Msa0171510:three_prime_UTR | 35.0% | |
| ! | TGGATATCTTTGTTGTGTTG+TGG | + | chr1_4:56279231-56279250 | Msa0171510:three_prime_UTR | 35.0% |
| AAAACGATTCCATACAGCGT+CGG | - | chr1_4:56275116-56275135 | None:intergenic | 40.0% | |
| TTTGGTAGGAATGTTGGCAA+GGG | - | chr1_4:56275179-56275198 | None:intergenic | 40.0% | |
| ! | TTTTGGTAGGAATGTTGGCA+AGG | - | chr1_4:56275180-56275199 | None:intergenic | 40.0% |
| TGCCAACATTCCTACCAAAA+AGG | + | chr1_4:56275180-56275199 | Msa0171510:CDS | 40.0% | |
| AGGTGGTATTCTTCTTCCTA+AGG | + | chr1_4:56275254-56275273 | Msa0171510:intron | 40.0% | |
| ! | TATGTTTTCGACAAGGCAGA+TGG | + | chr1_4:56275354-56275373 | Msa0171510:intron | 40.0% |
| ! | ATGTTTTCGACAAGGCAGAT+GGG | + | chr1_4:56275355-56275374 | Msa0171510:intron | 40.0% |
| CTTGTCTTTGGTCGAAATTG+CGG | - | chr1_4:56275443-56275462 | None:intergenic | 40.0% | |
| AATTGCAGGAATGTAAAGGG+TGG | - | chr1_4:56275766-56275785 | None:intergenic | 40.0% | |
| AGGACATAAATGTCGATCGA+TGG | - | chr1_4:56276017-56276036 | None:intergenic | 40.0% | |
| TGGATACCATCGATGGATAA+TGG | + | chr1_4:56276047-56276066 | Msa0171510:intron | 40.0% | |
| CTAGATCTCTTGCCATTGTT+TGG | + | chr1_4:56276170-56276189 | Msa0171510:intron | 40.0% | |
| AGATCTCTTGCCATTGTTTG+GGG | + | chr1_4:56276172-56276191 | Msa0171510:intron | 40.0% | |
| TCTATCATCACCCCAAACAA+TGG | - | chr1_4:56276185-56276204 | None:intergenic | 40.0% | |
| TGATTTCTATGCCTGATTCC+AGG | + | chr1_4:56276218-56276237 | Msa0171510:CDS | 40.0% | |
| TTAAGAGCTAACCTGGAATC+AGG | - | chr1_4:56276232-56276251 | None:intergenic | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | + | chr1_4:56276339-56276358 | Msa0171510:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | + | chr1_4:56276353-56276372 | Msa0171510:intron | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | + | chr1_4:56276339-56276358 | Msa0171510:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | + | chr1_4:56276353-56276372 | Msa0171510:intron | 40.0% | |
| AGTTCTCTTGGGCATTCAAA+AGG | + | chr1_4:56277846-56277865 | Msa0171510:intron | 40.0% | |
| AGTCAGTTAATTCGTAGCAG+AGG | - | chr1_4:56277901-56277920 | None:intergenic | 40.0% | |
| ! | TGAATTTGGGTTTGAACCTG+AGG | - | chr1_4:56277983-56278002 | None:intergenic | 40.0% |
| TGTCCCTGTGACTTAGAATT+TGG | + | chr1_4:56278033-56278052 | Msa0171510:intron | 40.0% | |
| ACTTAGGTGAAGTGATATGG+AGG | - | chr1_4:56278067-56278086 | None:intergenic | 40.0% | |
| ! | AAGAGCATGGATATGTGTTG+AGG | - | chr1_4:56278092-56278111 | None:intergenic | 40.0% |
| ACTTCATCATTAAGGACTGC+TGG | + | chr1_4:56278469-56278488 | Msa0171510:intron | 40.0% | |
| TGTAGTGAGCAAGACAGAAA+TGG | - | chr1_4:56278531-56278550 | None:intergenic | 40.0% | |
| GGAAGGAATCTCAGAAAATG+GGG | - | chr1_4:56278572-56278591 | None:intergenic | 40.0% | |
| GGGAAGGAATCTCAGAAAAT+GGG | - | chr1_4:56278573-56278592 | None:intergenic | 40.0% | |
| !! | CTAAGCTTGTTGATGTGTGT+TGG | + | chr1_4:56278653-56278672 | Msa0171510:CDS | 40.0% |
| !! | GTGTGTTGGCTTGAAATTCA+TGG | + | chr1_4:56278667-56278686 | Msa0171510:CDS | 40.0% |
| CATATTGAGTATTTGGGGAC+AGG | - | chr1_4:56278711-56278730 | None:intergenic | 40.0% | |
| TGGATTTCAGAACTGTTCTG+CGG | + | chr1_4:56278765-56278784 | Msa0171510:CDS | 40.0% | |
| TGTTCTGCGGATTTATCAGT+TGG | + | chr1_4:56278778-56278797 | Msa0171510:CDS | 40.0% | |
| !! | GATTTATCAGTTGGTGTCGA+AGG | + | chr1_4:56278787-56278806 | Msa0171510:CDS | 40.0% |
| TGTCTGTTTGGATCCAAATG+TGG | + | chr1_4:56278831-56278850 | Msa0171510:CDS | 40.0% | |
| TGTTTGGATCCAAATGTGGA+AGG | + | chr1_4:56278835-56278854 | Msa0171510:CDS | 40.0% | |
| TGAGGATTACCTTCCACATT+TGG | - | chr1_4:56278847-56278866 | None:intergenic | 40.0% | |
| AATCCTACTACTGTGTTGTG+CGG | - | chr1_4:56278871-56278890 | None:intergenic | 40.0% | |
| AATCTGATACAGATGAGTGG+TGG | + | chr1_4:56278982-56279001 | Msa0171510:CDS | 40.0% | |
| CATTCACTGAACTATGCAAG+GGG | + | chr1_4:56279076-56279095 | Msa0171510:three_prime_UTR | 40.0% | |
| TGTTGTTCAGTATACTGGGA+TGG | + | chr1_4:56279211-56279230 | Msa0171510:three_prime_UTR | 40.0% | |
| AATCAACAGACATCAGGAAG+AGG | - | chr1_4:56279261-56279280 | None:intergenic | 40.0% | |
| TGGAACAATCAACAGACATC+AGG | - | chr1_4:56279267-56279286 | None:intergenic | 40.0% | |
| GACAGAGATTCAGGATTTGC+CGG | + | chr1_4:56274997-56275016 | Msa0171510:CDS | 45.0% | |
| AGTTGTACGAGAGACTATGG+TGG | - | chr1_4:56275035-56275054 | None:intergenic | 45.0% | |
| TGGAGTTGTACGAGAGACTA+TGG | - | chr1_4:56275038-56275057 | None:intergenic | 45.0% | |
| !! | TCGGAAAGTGTTGGAAACGA+CGG | - | chr1_4:56275080-56275099 | None:intergenic | 45.0% |
| GACATGCTGCAAAGTGCAAA+GGG | + | chr1_4:56275385-56275404 | Msa0171510:intron | 45.0% | |
| CGCAATTTCGACCAAAGACA+AGG | + | chr1_4:56275441-56275460 | Msa0171510:intron | 45.0% | |
| CATGAACCCATATGCTCTTG+TGG | - | chr1_4:56275719-56275738 | None:intergenic | 45.0% | |
| AGAGCATATGGGTTCATGAG+TGG | + | chr1_4:56275721-56275740 | Msa0171510:intron | 45.0% | |
| AAGTGATGTCATAAACCGCG+AGG | + | chr1_4:56275957-56275976 | Msa0171510:intron | 45.0% | |
| CCATCGATGGTATCCATCAA+TGG | - | chr1_4:56276043-56276062 | None:intergenic | 45.0% | |
| ! | CCATTGATGGATACCATCGA+TGG | + | chr1_4:56276040-56276059 | Msa0171510:intron | 45.0% |
| CAGTTAATTCGTAGCAGAGG+AGG | - | chr1_4:56277898-56277917 | None:intergenic | 45.0% | |
| AAACTCATAGCAACCACCTC+AGG | + | chr1_4:56277964-56277983 | Msa0171510:intron | 45.0% | |
| ! | ATTTGGGTTTGAACCTGAGG+TGG | - | chr1_4:56277980-56277999 | None:intergenic | 45.0% |
| AGATAGTTGGGTGAAGAGCA+TGG | - | chr1_4:56278105-56278124 | None:intergenic | 45.0% | |
| GCATCCAAGTTCAGCTTGAT+TGG | + | chr1_4:56278128-56278147 | Msa0171510:intron | 45.0% | |
| GGATCCAATCAAGCTGAACT+TGG | - | chr1_4:56278135-56278154 | None:intergenic | 45.0% | |
| GCTACAGAAGAAGGATCTTG+GGG | - | chr1_4:56278156-56278175 | None:intergenic | 45.0% | |
| CGCTACAGAAGAAGGATCTT+GGG | - | chr1_4:56278157-56278176 | None:intergenic | 45.0% | |
| ! | GCAGTTTTTGCTTCATCTGC+AGG | + | chr1_4:56278179-56278198 | Msa0171510:intron | 45.0% |
| TCATCATTAAGGACTGCTGG+TGG | + | chr1_4:56278472-56278491 | Msa0171510:intron | 45.0% | |
| ! | GGAAAAGCTGATGATGTTCG+TGG | + | chr1_4:56278502-56278521 | Msa0171510:intron | 45.0% |
| GGGGAAGGAATCTCAGAAAA+TGG | - | chr1_4:56278574-56278593 | None:intergenic | 45.0% | |
| CAACAAGCTTAGCGACTTCA+GGG | - | chr1_4:56278645-56278664 | None:intergenic | 45.0% | |
| TCAACAAGCTTAGCGACTTC+AGG | - | chr1_4:56278646-56278665 | None:intergenic | 45.0% | |
| !! | TTATCAGTTGGTGTCGAAGG+TGG | + | chr1_4:56278790-56278809 | Msa0171510:CDS | 45.0% |
| ATGGGTGAGTTCTTCAATCC+AGG | + | chr1_4:56278934-56278953 | Msa0171510:CDS | 45.0% | |
| AAGAGAGGTCTCGTTGTTGA+AGG | + | chr1_4:56279018-56279037 | Msa0171510:CDS | 45.0% | |
| TGAACTATGCAAGGGGTCTT+GGG | + | chr1_4:56279083-56279102 | Msa0171510:three_prime_UTR | 45.0% | |
| GAGATTCAGGATTTGCCGGA+AGG | + | chr1_4:56275001-56275020 | Msa0171510:CDS | 50.0% | |
| ATGGTGGCAATGCATCCTTC+CGG | - | chr1_4:56275019-56275038 | None:intergenic | 50.0% | |
| ! | ATTCCATACAGCGTCGGAGT+TGG | - | chr1_4:56275110-56275129 | None:intergenic | 50.0% |
| GTAGGAATGTTGGCAAGGGA+AGG | - | chr1_4:56275175-56275194 | None:intergenic | 50.0% | |
| CGACATGCTGCAAAGTGCAA+AGG | + | chr1_4:56275384-56275403 | Msa0171510:intron | 50.0% | |
| GAAGTTGCAATTGGAGCGCA+TGG | + | chr1_4:56275475-56275494 | Msa0171510:intron | 50.0% | |
| GAACCCATATGCTCTTGTGG+CGG | - | chr1_4:56275716-56275735 | None:intergenic | 50.0% | |
| GCAGGAATGTAAAGGGTGGT+TGG | - | chr1_4:56275762-56275781 | None:intergenic | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | + | chr1_4:56276191-56276210 | Msa0171510:CDS | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | + | chr1_4:56276191-56276210 | Msa0171510:CDS | 50.0% | |
| GCGCTACAGAAGAAGGATCT+TGG | - | chr1_4:56278158-56278177 | None:intergenic | 50.0% | |
| AACTGCAGCGCTACAGAAGA+AGG | - | chr1_4:56278165-56278184 | None:intergenic | 50.0% | |
| GTTCGGTTGCCGCAACAATT+AGG | - | chr1_4:56278220-56278239 | None:intergenic | 50.0% | |
| AGTATTTGGGGACAGGACGA+TGG | - | chr1_4:56278704-56278723 | None:intergenic | 50.0% | |
| GTCCTACTGTGAGAAGCGAT+GGG | + | chr1_4:56278896-56278915 | Msa0171510:CDS | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | + | chr1_4:56278915-56278934 | Msa0171510:CDS | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | + | chr1_4:56278916-56278935 | Msa0171510:CDS | 50.0% | |
| ATACAGATGAGTGGTGGTCG+TGG | + | chr1_4:56278988-56279007 | Msa0171510:CDS | 50.0% | |
| CTGAACTATGCAAGGGGTCT+TGG | + | chr1_4:56279082-56279101 | Msa0171510:three_prime_UTR | 50.0% | |
| CGTACAACTCCAGTTGACGC+CGG | + | chr1_4:56275046-56275065 | Msa0171510:CDS | 55.0% | |
| ! | GGAGGCTGATCGGAAAGTGT+TGG | - | chr1_4:56275089-56275108 | None:intergenic | 55.0% |
| GGAGCGCATGGTGACAAACA+AGG | + | chr1_4:56275487-56275506 | Msa0171510:intron | 55.0% | |
| AGGACTGCTGGTGGTCATTG+AGG | + | chr1_4:56278481-56278500 | Msa0171510:intron | 55.0% | |
| ACTACTGTGTTGTGCGGCTG+AGG | - | chr1_4:56278865-56278884 | None:intergenic | 55.0% | |
| CAGCCGCACAACACAGTAGT+AGG | + | chr1_4:56278865-56278884 | Msa0171510:CDS | 55.0% | |
| CGTCCTACTGTGAGAAGCGA+TGG | + | chr1_4:56278895-56278914 | Msa0171510:CDS | 55.0% | |
| CACCCATCGCTTCTCACAGT+AGG | - | chr1_4:56278901-56278920 | None:intergenic | 55.0% | |
| CTACTGTGAGAAGCGATGGG+TGG | + | chr1_4:56278899-56278918 | Msa0171510:CDS | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | + | chr1_4:56278903-56278922 | Msa0171510:CDS | 55.0% | |
| GGAAACGACGGAGAGTCTGC+CGG | - | chr1_4:56275068-56275087 | None:intergenic | 60.0% | |
| CGTCGGAGTTGGAGGCTGAT+CGG | - | chr1_4:56275099-56275118 | None:intergenic | 60.0% | |
| ! | CCATACAGCGTCGGAGTTGG+AGG | - | chr1_4:56275107-56275126 | None:intergenic | 60.0% |
| CCTCCAACTCCGACGCTGTA+TGG | + | chr1_4:56275104-56275123 | Msa0171510:CDS | 60.0% | |
| ATATGCTCTTGTGGCGGCGG+GGG | - | chr1_4:56275710-56275729 | None:intergenic | 60.0% | |
| CATATGCTCTTGTGGCGGCG+GGG | - | chr1_4:56275711-56275730 | None:intergenic | 60.0% | |
| CCATATGCTCTTGTGGCGGC+GGG | - | chr1_4:56275712-56275731 | None:intergenic | 60.0% | |
| CCCATATGCTCTTGTGGCGG+CGG | - | chr1_4:56275713-56275732 | None:intergenic | 60.0% | |
| ! | CCGCCGCCACAAGAGCATAT+GGG | + | chr1_4:56275710-56275729 | Msa0171510:intron | 60.0% |
| CAGATGAGTGGTGGTCGTGG+TGG | + | chr1_4:56278991-56279010 | Msa0171510:CDS | 60.0% | |
| TGAGTGGTGGTCGTGGTGGT+TGG | + | chr1_4:56278995-56279014 | Msa0171510:CDS | 60.0% | |
| GGTCGTGGTGGTTGGAAGAG+AGG | + | chr1_4:56279003-56279022 | Msa0171510:CDS | 60.0% | |
| ATGCAAGGGGTCTTGGGTCG+TGG | + | chr1_4:56279089-56279108 | Msa0171510:three_prime_UTR | 60.0% | |
| GAGAGTCTGCCGGCGTCAAC+TGG | - | chr1_4:56275058-56275077 | None:intergenic | 65.0% | |
| ! | CCCGCCGCCACAAGAGCATA+TGG | + | chr1_4:56275709-56275728 | Msa0171510:intron | 65.0% |
| GGGGGATCGTTCAAGCCTCG+CGG | - | chr1_4:56275975-56275994 | None:intergenic | 65.0% | |
| ! | TCTTGTGGCGGCGGGGGTGT+TGG | - | chr1_4:56275704-56275723 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56274995 | 56279339 | 56274995 | ID=Msa0171510;Name=Msa0171510 |
| chr1_4 | mRNA | 56274995 | 56279339 | 56274995 | ID=Msa0171510-mRNA-1;Parent=Msa0171510;Name=Msa0171510-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|1|1|1|3|268|240 |
| chr1_4 | exon | 56274995 | 56275218 | 56274995 | ID=Msa0171510-mRNA-1:exon:16953;Parent=Msa0171510-mRNA-1 |
| chr1_4 | exon | 56276174 | 56276239 | 56276174 | ID=Msa0171510-mRNA-1:exon:16954;Parent=Msa0171510-mRNA-1 |
| chr1_4 | exon | 56278639 | 56279339 | 56278639 | ID=Msa0171510-mRNA-1:exon:16955;Parent=Msa0171510-mRNA-1 |
| chr1_4 | CDS | 56274995 | 56275218 | 56274995 | ID=Msa0171510-mRNA-1:cds;Parent=Msa0171510-mRNA-1 |
| chr1_4 | CDS | 56276174 | 56276239 | 56276174 | ID=Msa0171510-mRNA-1:cds;Parent=Msa0171510-mRNA-1 |
| chr1_4 | CDS | 56278639 | 56279071 | 56278639 | ID=Msa0171510-mRNA-1:cds;Parent=Msa0171510-mRNA-1 |
| chr1_4 | three_prime_UTR | 56279072 | 56279339 | 56279072 | ID=Msa0171510-mRNA-1:three_prime_utr;Parent=Msa0171510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
