AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0663690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663690 MtrunA17_Chr4g0001471 96.859 382 9 1 1 382 1 379 0.0 754
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663690 AT1G73060.1 72.487 378 82 3 5 381 1 357 0.0 532

Find 210 sgRNAs with CRISPR-Local

Find 473 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATAGTAATAGCTATTA+TGG 0.126403 4_4:-2595953 Msa0663700:CDS
GGCAAGCTTGCTGCAGATTT+TGG 0.164117 4_4:+2595198 Msa0663690:three_prime_UTR
GGTGGGGACTTCAGAATTTA+AGG 0.170474 4_4:-2596409 Msa0663700:intron
CCTCAAAGTTCGTCAAAATT+TGG 0.172842 4_4:-2594895 Msa0663700:CDS
CCATAGACAGTAACAAAATT+TGG 0.208171 4_4:+2596430 Msa0663690:three_prime_UTR
TCATTATAATCATACATATT+TGG 0.213712 4_4:-2594325 None:intergenic
TAAACAGATACACCTGATTT+AGG 0.217240 4_4:-2588936 None:intergenic
TTCTGCAAGGGCGTTGGTTC+CGG 0.218060 4_4:-2594920 Msa0663700:CDS
CTGCATGGAGGAAGCATTTA+AGG 0.231374 4_4:-2595002 Msa0663700:CDS
ATATCTCTTCTAAGATCTTT+TGG 0.250851 4_4:+2595617 Msa0663690:three_prime_UTR
CAGCAACATTTCTTCATATA+AGG 0.266428 4_4:+2590299 Msa0663690:CDS
GACCCTCAACAATTCTTCTT+TGG 0.270857 4_4:-2593618 None:intergenic
ATACAGTGTGACAAACATTT+TGG 0.276062 4_4:-2594610 None:intergenic
TGAATTCGCAGTGCTGATTT+AGG 0.279676 4_4:+2592490 Msa0663690:intron
AGTGCTGATTTAGGCCTTCT+AGG 0.283454 4_4:+2592499 Msa0663690:intron
AAAGCGGTATTGCAAATCTT+TGG 0.283496 4_4:-2592530 None:intergenic
CAGAGAAGACTTACATAGTT+AGG 0.283571 4_4:-2595371 Msa0663700:CDS
AATAAAAGTGTTGGGGTTGA+TGG 0.284314 4_4:-2592350 None:intergenic
AGGGGTCGATGAAGAAAATT+TGG 0.285665 4_4:-2595651 Msa0663700:CDS
CCCCATAATAGCTATTACTA+TGG 0.288425 4_4:+2595951 Msa0663690:three_prime_UTR
TCTGCAAGGGCGTTGGTTCC+GGG 0.297464 4_4:-2594919 Msa0663700:CDS
CCACTGTAATTGACAATATA+AGG 0.298504 4_4:-2592729 None:intergenic
AAATTTGGGGAAAACTTCTA+TGG 0.302110 4_4:+2596445 Msa0663690:three_prime_UTR
GCTTTGTCCTCGTATTTCTT+TGG 0.302301 4_4:-2594205 None:intergenic
GCCTAGAGCCATGTATTTAT+AGG 0.310323 4_4:+2594578 Msa0663690:three_prime_UTR
CATAGACAGTAACAAAATTT+GGG 0.315147 4_4:+2596431 Msa0663690:three_prime_UTR
GTGTTGTGTGGCACTGAAAT+TGG 0.317840 4_4:-2588709 None:intergenic
GTGCTCTTTGCTCTTCTGAT+TGG 0.318517 4_4:-2595925 Msa0663700:CDS
AAATTGGCTCAGCACAAATA+TGG 0.323793 4_4:-2588693 None:intergenic
TCCATAGTAATAGCTATTAT+GGG 0.333113 4_4:-2595952 Msa0663700:CDS
AATCAGGTTCTGAGGGCTTT+GGG 0.347993 4_4:+2594782 Msa0663690:three_prime_UTR
AAATCAGGTTCTGAGGGCTT+TGG 0.350213 4_4:+2594781 Msa0663690:three_prime_UTR
CAAGATTAAATAAAAGTGTT+GGG 0.358312 4_4:-2592358 None:intergenic
AATTTCTACGAAGAGGCTAT+AGG 0.362385 4_4:+2593675 Msa0663690:CDS
TCAATCAATGTCGGTTCGTC+TGG 0.370374 4_4:-2595789 Msa0663700:CDS
CTTTGGGTGGGAAGCCTAGA+AGG 0.376335 4_4:-2592513 None:intergenic
ATACAACAGTCTATGCTTCT+CGG 0.384722 4_4:-2594867 Msa0663700:CDS
TCATTGAGAGCACTGAAATC+AGG 0.395867 4_4:+2594766 Msa0663690:three_prime_UTR
ATGAACAACATCTCATCAAC+TGG 0.395916 4_4:+2595339 Msa0663690:three_prime_UTR
AAGCGGTATTGCAAATCTTT+GGG 0.399943 4_4:-2592529 None:intergenic
GTGGGAAGAAGATTCTGATT+TGG 0.401550 4_4:+2594029 Msa0663690:CDS
TTAGGATCGAAACCACGATT+TGG 0.404526 4_4:-2588918 None:intergenic
TGAAGAAGTTCTTGCTTATG+AGG 0.407718 4_4:-2594736 None:intergenic
GAAGAATTGTTGAGGGTCCT+TGG 0.409519 4_4:+2593623 Msa0663690:CDS
ATTTCTACGAAGAGGCTATA+GGG 0.409617 4_4:+2593676 Msa0663690:CDS
AAGGTTGATGGCCTTACTAT+AGG 0.409941 4_4:+2591214 Msa0663690:intron
CTTGCAGAATCATCACTTCC+CGG 0.414286 4_4:+2594934 Msa0663690:three_prime_UTR
CGGTTTGCTGCTAATCTTCG+TGG 0.417955 4_4:-2594847 Msa0663700:CDS
TTCACGGTTCTTGTTGATGA+TGG 0.422131 4_4:+2595177 Msa0663690:three_prime_UTR
TACCTCACTCATAGCTTTCA+CGG 0.425446 4_4:+2595161 Msa0663690:three_prime_UTR
TTACTCCAGTGTTCTACATT+CGG 0.425820 4_4:+2592563 Msa0663690:CDS
TCCTGCAGGGATATCATCTA+AGG 0.428313 4_4:-2591239 None:intergenic
CTTATATGAAGAAATGTTGC+TGG 0.430887 4_4:-2590298 None:intergenic
CGTGGTTTCGATCCTAAATC+AGG 0.444850 4_4:+2588924 Msa0663690:CDS
TCCATTGTTGCGAATAGAAA+CGG 0.447494 4_4:+2595052 Msa0663690:three_prime_UTR
TGCCAACATTCAACTTGTCT+TGG 0.448124 4_4:+2590784 Msa0663690:CDS
TCATAAATCGTTCAGGTCCC+TGG 0.448130 4_4:+2593436 Msa0663690:intron
TTGCTTAAGCATCACCTGCC+AGG 0.449595 4_4:-2593454 None:intergenic
GCGAGAACTTCATAAGACTT+AGG 0.454079 4_4:-2588963 None:intergenic
GGGTGTTCAACCACTTGTAT+TGG 0.454525 4_4:+2595675 Msa0663690:three_prime_UTR
ATGGAAAACAAAACCTCTCC+AGG 0.456409 4_4:+2595970 Msa0663690:three_prime_UTR
TCAGTTGTTCAAAGCAGCTC+TGG 0.458399 4_4:+2591005 Msa0663690:CDS
CCATGTAGATGTGTTAAACT+TGG 0.461273 4_4:+2594503 Msa0663690:three_prime_UTR
GCATCATCGCTTGCTTCCTC+CGG 0.465125 4_4:-2595726 Msa0663700:CDS
GCTTGCTTCCTCCGGACCTA+AGG 0.465489 4_4:-2595718 Msa0663700:CDS
CATCTTCAAAGTCAAAATCA+AGG 0.471831 4_4:-2591297 None:intergenic
AATGAAGCCACAGGTCCTGC+AGG 0.472666 4_4:-2591253 None:intergenic
TCAAGATTAAATAAAAGTGT+TGG 0.473701 4_4:-2592359 None:intergenic
TACATTAATTAAACTGTGCA+TGG 0.475186 4_4:-2594391 None:intergenic
TTAGTAGTAGAAATTGAAGA+AGG 0.484021 4_4:-2588825 None:intergenic
TTCACCAGCTCTCTTGAACT+TGG 0.484399 4_4:+2594808 Msa0663690:three_prime_UTR
CTGACTCTTTCCCTTAGGTC+CGG 0.486118 4_4:+2595707 Msa0663690:three_prime_UTR
GACTTTGAAGATGAGAATGA+AGG 0.486387 4_4:+2591307 Msa0663690:CDS
AGCGTCTGACTCTTTCCCTT+AGG 0.488363 4_4:+2595702 Msa0663690:three_prime_UTR
AATAGCAGTACACGTGAACT+TGG 0.489119 4_4:+2591556 Msa0663690:CDS
ATATAGCTGTACCAGGGTAC+TGG 0.490688 4_4:-2592764 None:intergenic
CCTCCTCTTCTTGAAGTCCA+AGG 0.491038 4_4:-2593640 None:intergenic
TGAAGAAATGTTGCTGGGCA+AGG 0.493271 4_4:-2590292 None:intergenic
AGAGAAGACTTACATAGTTA+GGG 0.493349 4_4:-2595370 Msa0663700:CDS
GAAAGCATGTAAAGAAGTTG+AGG 0.502958 4_4:-2596642 Msa0663700:CDS
TTCTTAGAAGTGCAGGTCGT+TGG 0.503758 4_4:+2591497 Msa0663690:intron
GGTTCCTCTCTTTGCTAACA+TGG 0.504157 4_4:-2595445 Msa0663700:CDS
GAAGAAGGTGAAGAAGATAG+TGG 0.505084 4_4:-2588810 None:intergenic
GGCATTTGCTTTAGAAGCAG+AGG 0.505619 4_4:-2595136 Msa0663700:CDS
AATTCACATTTCTTGTATTG+TGG 0.506801 4_4:-2596614 Msa0663700:CDS
GACAATCGCAGCGGCAGCAG+TGG 0.513635 4_4:+2594695 Msa0663690:three_prime_UTR
AGTGCAACTCGCTTCACCCT+TGG 0.516086 4_4:+2593507 Msa0663690:CDS
TTTGTTTGAATTTAGTCAGA+AGG 0.518058 4_4:-2595583 Msa0663700:CDS
TCCTTAGATGATATCCCTGC+AGG 0.518676 4_4:+2591238 Msa0663690:CDS
ATTCGCAACAATGGAGAACA+TGG 0.522904 4_4:-2595044 Msa0663700:CDS
GACGAACCGACATTGATTGA+AGG 0.524267 4_4:+2595792 Msa0663690:three_prime_UTR
TGGAGGAAATGAGGATCAAA+AGG 0.526808 4_4:-2595769 Msa0663700:CDS
TCCGTTTCTATTCGCAACAA+TGG 0.528384 4_4:-2595053 Msa0663700:CDS
GCAAACACACTGTTGTAACT+AGG 0.529207 4_4:+2594226 Msa0663690:three_prime_UTR
GTATTTGTCAGCTGCAGTGT+TGG 0.529453 4_4:-2594636 None:intergenic
GATAGTGGAGAAAGATGTGA+AGG 0.532078 4_4:-2588795 None:intergenic
AGAGTTGCTAACATGGGCAT+TGG 0.533440 4_4:-2595223 Msa0663700:CDS
TGATGATTCTGCAAGGGCGT+TGG 0.534637 4_4:-2594926 Msa0663700:CDS
GGAAGAAAAGTGAGGTTGTG+AGG 0.536168 4_4:-2588774 None:intergenic
TTTCACAGTACACTTGGTCA+GGG 0.537219 4_4:-2596012 Msa0663700:intron
GAAAGCTATGAGTGAGGTAG+AGG 0.537681 4_4:-2595157 Msa0663700:CDS
GAGATGTTGTTCATCATTCG+TGG 0.539150 4_4:-2595330 Msa0663700:CDS
CTAGAGAGTGTTACTACAGA+TGG 0.541421 4_4:-2595303 Msa0663700:CDS
AGTTCAAGTAAGCATATACC+AGG 0.542819 4_4:-2596590 Msa0663700:CDS
GTCTTCTCTGTATATAAACT+CGG 0.543647 4_4:+2595384 Msa0663690:three_prime_UTR
TAGACACATACATAGTAGAC+AGG 0.544177 4_4:-2595088 Msa0663700:CDS
ACATTAATTAAACTGTGCAT+GGG 0.546350 4_4:-2594390 None:intergenic
ATCAATGTCGGTTCGTCTGG+AGG 0.548219 4_4:-2595786 Msa0663700:CDS
TAGGCTTGTTGAATTTCGAT+AGG 0.548727 4_4:-2594560 None:intergenic
CATCTAAGGAGCCTATAGTA+AGG 0.549669 4_4:-2591225 None:intergenic
CGGTATTGCAAATCTTTGGG+TGG 0.549941 4_4:-2592526 None:intergenic
CAACACAATGCTACTATCCA+TGG 0.551674 4_4:+2588731 Msa0663690:exon
TTGTTTGAATTTAGTCAGAA+GGG 0.551796 4_4:-2595582 Msa0663700:intron
GCACTGAAATCAGGTTCTGA+GGG 0.551873 4_4:+2594775 Msa0663690:three_prime_UTR
AGAAGTGGCTTCTTCAACAG+AGG 0.551875 4_4:-2595276 Msa0663700:CDS
CTTGCTTCCTCCGGACCTAA+GGG 0.552988 4_4:-2595717 Msa0663700:CDS
AGCACTGAAATCAGGTTCTG+AGG 0.553944 4_4:+2594774 Msa0663690:three_prime_UTR
AAATCGTTCAGGTCCCTGGC+AGG 0.556462 4_4:+2593440 Msa0663690:intron
TTTGACGAACTTTGAGGACC+CGG 0.557037 4_4:+2594901 Msa0663690:three_prime_UTR
AAAGCATGTAAAGAAGTTGA+GGG 0.558423 4_4:-2596641 Msa0663700:CDS
TTGCAGAATCATCACTTCCC+GGG 0.558557 4_4:+2594935 Msa0663690:three_prime_UTR
TGCTTAAGCATCACCTGCCA+GGG 0.558854 4_4:-2593453 None:intergenic
GCCTATAAATACATGGCTCT+AGG 0.559293 4_4:-2594579 None:intergenic
TACAAATAGTGTCATGCTGA+AGG 0.559604 4_4:+2594673 Msa0663690:three_prime_UTR
GAAGAAATGTTGCTGGGCAA+GGG 0.561828 4_4:-2590291 None:intergenic
CGGTTCGTCTGGAGGAAATG+AGG 0.562037 4_4:-2595778 Msa0663700:CDS
GGCCAAAGAAGAATTGTTGA+GGG 0.563652 4_4:+2593616 Msa0663690:intron
TGGTTATATTGAGAAGTATG+TGG 0.564545 4_4:+2591576 Msa0663690:CDS
AGTACCAAGTTCAAGAGAGC+TGG 0.565279 4_4:-2594812 Msa0663700:CDS
TCTTCTGATTGGAAACATGC+AGG 0.565687 4_4:-2595914 Msa0663700:intron
ACTACAGATGGTGGAAGAAG+TGG 0.567107 4_4:-2595291 Msa0663700:CDS
AGCCAAGACAAGTTGAATGT+TGG 0.570943 4_4:-2590786 None:intergenic
TTATATGAAGAAATGTTGCT+GGG 0.572669 4_4:-2590297 None:intergenic
AAGATTAAATAAAAGTGTTG+GGG 0.574401 4_4:-2592357 None:intergenic
TTCACAGTACACTTGGTCAG+GGG 0.577586 4_4:-2596011 Msa0663700:intron
CCAAGTTTAACACATCTACA+TGG 0.577774 4_4:-2594503 None:intergenic
TGCTCATATGCAGAGAAAGA+AGG 0.579598 4_4:+2594132 Msa0663690:three_prime_UTR
TTTAAGGCGAAGGCGAAGGA+AGG 0.579780 4_4:-2594986 Msa0663700:CDS
GCTGTGTTTCGCCAGTACCC+TGG 0.579836 4_4:+2592753 Msa0663690:CDS
CCATAGTAATAGCTATTATG+GGG 0.581237 4_4:-2595951 Msa0663700:CDS
TTAATGAATATGTAGAGCGA+TGG 0.581715 4_4:-2591535 None:intergenic
ATGAATATGTAGAGCGATGG+AGG 0.586924 4_4:-2591532 None:intergenic
AGCATTTAAGGCGAAGGCGA+AGG 0.589667 4_4:-2594990 Msa0663700:CDS
TCTCTAGAATTTCTACGAAG+AGG 0.589731 4_4:+2593668 Msa0663690:CDS
CCTCTAGCAATGTTCTACTC+AGG 0.589927 4_4:-2594073 None:intergenic
ATTGCAGTCAAGCACGTGGT+GGG 0.590052 4_4:+2594011 Msa0663690:intron
CTGATCCGAATGTAGAACAC+TGG 0.590070 4_4:-2592568 None:intergenic
CAATCTATATTCAAGCTGCA+TGG 0.590954 4_4:-2595017 Msa0663700:CDS
GGAGGAAGCATTTAAGGCGA+AGG 0.591557 4_4:-2594996 Msa0663700:CDS
AATGCTACTATCCATGGCTA+TGG 0.594263 4_4:+2588737 Msa0663690:exon
ATATTACGAATCTGATTACC+CGG 0.594747 4_4:-2594953 Msa0663700:CDS
GGTATTGCAAATCTTTGGGT+GGG 0.594858 4_4:-2592525 None:intergenic
TAGCATTGTGTTGTGTTGTG+TGG 0.596955 4_4:-2588721 None:intergenic
GCGATGATGCATCCACTGCT+CGG 0.598686 4_4:+2595739 Msa0663690:three_prime_UTR
CCTTGGACTTCAAGAAGAGG+AGG 0.602803 4_4:+2593640 Msa0663690:CDS
ATCTTCAAAGTCAAAATCAA+GGG 0.605002 4_4:-2591296 None:intergenic
ATATACCAGGGTATGACAGT+TGG 0.606713 4_4:-2596577 Msa0663700:CDS
GACTAGTACCTACCCTGGAG+AGG 0.607375 4_4:-2595983 Msa0663700:CDS
CCTTATATTGTCAATTACAG+TGG 0.607987 4_4:+2592729 Msa0663690:CDS
TGATATCCCTGCAGGACCTG+TGG 0.610302 4_4:+2591246 Msa0663690:CDS
ATCTTGAGCTAGATACACTA+CGG 0.610940 4_4:+2592375 Msa0663690:CDS
AGGCCAAAGAAGAATTGTTG+AGG 0.612770 4_4:+2593615 Msa0663690:intron
GAGAGTGTTACTACAGATGG+TGG 0.613056 4_4:-2595300 Msa0663700:CDS
GACCTACCTTCAATCAATGT+CGG 0.613772 4_4:-2595798 Msa0663700:CDS
AAGGCGAAGGCGAAGGAAGG+AGG 0.615424 4_4:-2594983 Msa0663700:CDS
ACTCTTTCCCTTAGGTCCGG+AGG 0.617015 4_4:+2595710 Msa0663690:three_prime_UTR
AGATGACATAGCCATAGCCA+TGG 0.618729 4_4:-2588748 None:intergenic
AAAGGCGTGACTCCGAGCAG+TGG 0.621729 4_4:-2595751 Msa0663700:CDS
TCATGAACTTACTTCACCAA+GGG 0.622484 4_4:-2593523 None:intergenic
AAACAAAACCTCTCCAGGGT+AGG 0.625990 4_4:+2595975 Msa0663690:three_prime_UTR
GTGGTGAAGAGTTGCTAACA+TGG 0.626286 4_4:-2595230 Msa0663700:CDS
CGGGAAGTGATGATTCTGCA+AGG 0.626896 4_4:-2594933 Msa0663700:CDS
AAGACTTACATAGTTAGGGA+AGG 0.629987 4_4:-2595366 Msa0663700:CDS
ATGAAGCCACAGGTCCTGCA+GGG 0.630187 4_4:-2591252 None:intergenic
TACAAGTGGTTGAACACCCG+AGG 0.630986 4_4:-2595671 Msa0663700:CDS
ATTTGGAAGTATCATCTGCA+TGG 0.634373 4_4:+2594046 Msa0663690:CDS
TCTTCATCAGAGCCAAATCG+TGG 0.636063 4_4:+2588906 Msa0663690:CDS
GTGGTTAGCCTATAAATACA+TGG 0.636389 4_4:-2594586 None:intergenic
GACGCTACGACCAATACAAG+TGG 0.637852 4_4:-2595685 Msa0663700:CDS
CATTAATTAAACTGTGCATG+GGG 0.637978 4_4:-2594389 None:intergenic
TACACAAGCATAAGAACCAT+CGG 0.638469 4_4:-2593478 None:intergenic
TATTGCAGTCAAGCACGTGG+TGG 0.640120 4_4:+2594010 Msa0663690:intron
TTCATGAACTTACTTCACCA+AGG 0.640836 4_4:-2593524 None:intergenic
GTGATGCTTAAGCAAACCGA+TGG 0.643172 4_4:+2593462 Msa0663690:CDS
TGGAAAACAAAACCTCTCCA+GGG 0.644846 4_4:+2595971 Msa0663690:three_prime_UTR
TCGTCCATGTTAGCAAAGAG+AGG 0.645418 4_4:+2595441 Msa0663690:three_prime_UTR
GGGAAGTGATGATTCTGCAA+GGG 0.645571 4_4:-2594932 Msa0663700:CDS
GAGTAAATTGAGAAAGAAAG+CGG 0.647482 4_4:-2592546 None:intergenic
GGTCCTTGGACTTCAAGAAG+AGG 0.649587 4_4:+2593637 Msa0663690:CDS
TTTCTCCAACTGTCATACCC+TGG 0.659364 4_4:+2596572 Msa0663690:three_prime_UTR
TCGGATCAGAGATTATTCAA+AGG 0.660666 4_4:+2592582 Msa0663690:CDS
CTTGGACTTCAAGAAGAGGA+GGG 0.667611 4_4:+2593641 Msa0663690:CDS
ATAGACAGTAACAAAATTTG+GGG 0.668163 4_4:+2596432 Msa0663690:three_prime_UTR
CTTCTGACTAGTACCTACCC+TGG 0.672528 4_4:-2595988 Msa0663700:CDS
CCTGAGTAGAACATTGCTAG+AGG 0.675597 4_4:+2594073 Msa0663690:exon
ACAAGTGGTTGAACACCCGA+GGG 0.676415 4_4:-2595670 Msa0663700:CDS
AACCGTGAAAGCTATGAGTG+AGG 0.683734 4_4:-2595163 Msa0663700:CDS
TTCGCAACAATGGAGAACAT+GGG 0.684012 4_4:-2595043 Msa0663700:CDS
GATGTGAAGGAAGAAAAGTG+AGG 0.687118 4_4:-2588782 None:intergenic
AGCTGCTTTGAACAACTGAG+AGG 0.692149 4_4:-2591001 None:intergenic
GAGTAGAACATTGCTAGAGG+AGG 0.693732 4_4:+2594076 Msa0663690:exon
TGGTGAAGAGTTGCTAACAT+GGG 0.697702 4_4:-2595229 Msa0663700:CDS
TATTACGAATCTGATTACCC+GGG 0.702346 4_4:-2594952 Msa0663700:CDS
AACCGACATTGATTGAAGGT+AGG 0.702813 4_4:+2595796 Msa0663690:three_prime_UTR
TCTATATTCAAGCTGCATGG+AGG 0.707083 4_4:-2595014 Msa0663700:CDS
TGGAAGTATCATCTGCATGG+CGG 0.725682 4_4:+2594049 Msa0663690:CDS
TGATATTGCAGTCAAGCACG+TGG 0.735833 4_4:+2594007 Msa0663690:intron
ATGCTGAAGGACAATCGCAG+CGG 0.746460 4_4:+2594686 Msa0663690:three_prime_UTR
GTTCAAGTAAGCATATACCA+GGG 0.749555 4_4:-2596589 Msa0663700:CDS
CAAGTGGTTGAACACCCGAG+GGG 0.768003 4_4:-2595669 Msa0663700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAGCAAATTTAAAAT+CGG + chr4_4:2589676-2589695 Msa0663690:intron 10.0%
!! TATTATTCAATATTTATCTA+TGG + chr4_4:2590099-2590118 Msa0663690:intron 10.0%
!!! ATTTTAACAAATTTTCATTA+TGG + chr4_4:2590518-2590537 Msa0663690:intron 10.0%
!!! ATCTAAAATTCTATAAATTA+TGG + chr4_4:2596167-2596186 Msa0663690:intron 10.0%
!!! AATTTGAAACTATATTTGTA+GGG + chr4_4:2589539-2589558 Msa0663690:intron 15.0%
!! TAATTTATCCTACTAATATT+TGG - chr4_4:2590448-2590467 None:intergenic 15.0%
!! ATACATCAAATTAAATAACT+AGG - chr4_4:2592291-2592310 None:intergenic 15.0%
!!! ATATTTTCTCAAATAATATG+AGG + chr4_4:2592663-2592682 Msa0663690:intron 15.0%
!! CGATTTATGAAAAATATTTA+GGG - chr4_4:2593426-2593445 None:intergenic 15.0%
!! ACGATTTATGAAAAATATTT+AGG - chr4_4:2593427-2593446 None:intergenic 15.0%
!!! TATAAATATTTTAAGAAGGT+TGG - chr4_4:2593883-2593902 None:intergenic 15.0%
!!! CTTGTATAAATATTTTAAGA+AGG - chr4_4:2593887-2593906 None:intergenic 15.0%
!! TTTAAAAGAAAAAACTATGT+AGG - chr4_4:2594163-2594182 None:intergenic 15.0%
!! TCATTATAATCATACATATT+TGG - chr4_4:2594328-2594347 None:intergenic 15.0%
!! ATATTTATAAAGGATGATAT+AGG + chr4_4:2596118-2596137 Msa0663690:intron 15.0%
!! AAATATATATGTATTAGTGT+CGG - chr4_4:2596289-2596308 Msa0663700:intron 15.0%
!!! TTGCTATTTTCTCAAATTTT+CGG - chr4_4:2589303-2589322 None:intergenic 20.0%
!! TCTTGATATTGTGAAATTTA+TGG + chr4_4:2589445-2589464 Msa0663690:intron 20.0%
!! TTGTGAAATTTATGGATAAA+TGG + chr4_4:2589453-2589472 Msa0663690:intron 20.0%
!!! CAATTTGAAACTATATTTGT+AGG + chr4_4:2589538-2589557 Msa0663690:intron 20.0%
!! GTAATTAAAAGGAGATTATT+TGG + chr4_4:2589958-2589977 Msa0663690:intron 20.0%
!! TTCAATATTTATCTATGGAA+AGG + chr4_4:2590104-2590123 Msa0663690:intron 20.0%
!! AGAAAAAATGTTGAAAATGT+AGG - chr4_4:2590143-2590162 None:intergenic 20.0%
!!! TAATAACAATATTTTGCTTG+CGG + chr4_4:2590210-2590229 Msa0663690:intron 20.0%
!!! TGAATTATTTGTTTCAGTTT+TGG + chr4_4:2590364-2590383 Msa0663690:intron 20.0%
!!! TGAAAATTTGTTAAAATCCA+TGG - chr4_4:2590515-2590534 None:intergenic 20.0%
!! TCAAATTCCTAAATATTTCA+AGG + chr4_4:2590739-2590758 Msa0663690:intron 20.0%
!! CAAATTCCTAAATATTTCAA+GGG + chr4_4:2590740-2590759 Msa0663690:intron 20.0%
!!! GAATATTCTTATTTACTATG+AGG + chr4_4:2591052-2591071 Msa0663690:intron 20.0%
!! TATGATATCTTCATTCTTTA+TGG - chr4_4:2591145-2591164 None:intergenic 20.0%
!!! TTCATCTTTATTTTGTTTCA+AGG + chr4_4:2591195-2591214 Msa0663690:intron 20.0%
!!! AAATTTTTCTTGAGTCATAT+TGG + chr4_4:2591416-2591435 Msa0663690:intron 20.0%
!! AAAAATCATGAAACCTTTAA+TGG - chr4_4:2591615-2591634 None:intergenic 20.0%
!!! TTCATGATTTTTTATCTGTT+CGG + chr4_4:2591623-2591642 Msa0663690:intron 20.0%
!! ATTCTCGAATTAGAAATATA+GGG - chr4_4:2591999-2592018 None:intergenic 20.0%
!! TAAATAGTAAAACTTGATGT+AGG + chr4_4:2592157-2592176 Msa0663690:intron 20.0%
!!! AAGATTAAATAAAAGTGTTG+GGG - chr4_4:2592360-2592379 None:intergenic 20.0%
!!! CAAGATTAAATAAAAGTGTT+GGG - chr4_4:2592361-2592380 None:intergenic 20.0%
!!! TCAAGATTAAATAAAAGTGT+TGG - chr4_4:2592362-2592381 None:intergenic 20.0%
!!! GTTGTACTCTTTTTTTTTAT+TGG + chr4_4:2592403-2592422 Msa0663690:intron 20.0%
!! CAGATAATGATAAATATCTA+GGG - chr4_4:2592631-2592650 None:intergenic 20.0%
!! TCAGATAATGATAAATATCT+AGG - chr4_4:2592632-2592651 None:intergenic 20.0%
!! TCAAATTGTCAATATGAAAA+AGG + chr4_4:2593266-2593285 Msa0663690:intron 20.0%
!! CAAATTGTCAATATGAAAAA+GGG + chr4_4:2593267-2593286 Msa0663690:intron 20.0%
!! ATTCATTTGTGTAATGAATT+TGG + chr4_4:2593301-2593320 Msa0663690:intron 20.0%
!! ATAAAAATAAACTAGCTATC+TGG - chr4_4:2593354-2593373 None:intergenic 20.0%
!!! ATATTTTTCATAAATCGTTC+AGG + chr4_4:2593429-2593448 Msa0663690:intron 20.0%
!! ATACCTTATCTAATATCTAT+TGG + chr4_4:2593585-2593604 Msa0663690:intron 20.0%
!!! ATGTGTAAATTTTACATAAG+AGG - chr4_4:2593794-2593813 None:intergenic 20.0%
!! ATAGGATCATAAATCATATT+TGG + chr4_4:2593942-2593961 Msa0663690:intron 20.0%
!! ATGTTTACAGTAAAAACTTT+CGG + chr4_4:2595887-2595906 Msa0663690:intron 20.0%
!! GAATCAAAGCATATTTATAA+AGG + chr4_4:2596108-2596127 Msa0663690:intron 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG + chr4_4:2596326-2596345 Msa0663690:intron 20.0%
! TTAGTAGTAGAAATTGAAGA+AGG - chr4_4:2588828-2588847 None:intergenic 25.0%
! AGAATGAAAATTAAACGTAC+GGG - chr4_4:2589055-2589074 None:intergenic 25.0%
! GAGAATGAAAATTAAACGTA+CGG - chr4_4:2589056-2589075 None:intergenic 25.0%
! TATTCATTAATTGACTGATG+TGG - chr4_4:2589222-2589241 None:intergenic 25.0%
! AACTATATTTGTAGGGAATT+TGG + chr4_4:2589546-2589565 Msa0663690:intron 25.0%
! TCAATATTTGAATCCAACAT+TGG + chr4_4:2589623-2589642 Msa0663690:intron 25.0%
!!! TAGTTGCTTTGCTATTATTA+TGG + chr4_4:2589789-2589808 Msa0663690:intron 25.0%
! TGTATTCCAAATTACTTGTT+TGG + chr4_4:2589861-2589880 Msa0663690:intron 25.0%
! AAAGATCCAAACAAGTAATT+TGG - chr4_4:2589870-2589889 None:intergenic 25.0%
!!! TAGAGAATCTATTTTTGTGT+AGG - chr4_4:2589895-2589914 None:intergenic 25.0%
! GGGACATAATAGTAATTAAA+AGG + chr4_4:2589947-2589966 Msa0663690:intron 25.0%
! TTTGGTTGAGAGATAATATT+TGG + chr4_4:2589976-2589995 Msa0663690:intron 25.0%
! TTATATGAAGAAATGTTGCT+GGG - chr4_4:2590300-2590319 None:intergenic 25.0%
!! TGTATATAGGTCTATGTTTT+TGG + chr4_4:2590395-2590414 Msa0663690:intron 25.0%
! ACAAAGTTCCAAATATTAGT+AGG + chr4_4:2590437-2590456 Msa0663690:intron 25.0%
! TTAAAATCCATGGTAAACAA+AGG - chr4_4:2590505-2590524 None:intergenic 25.0%
!! ATATTTTGCTAATCAGAAGT+AGG - chr4_4:2590569-2590588 None:intergenic 25.0%
!!! TTATTTTGTTTCAAGGTTGA+TGG + chr4_4:2591202-2591221 Msa0663690:intron 25.0%
! ATCTTCAAAGTCAAAATCAA+GGG - chr4_4:2591299-2591318 None:intergenic 25.0%
! TAATGCATAAGTTTCAAACA+TGG - chr4_4:2591389-2591408 None:intergenic 25.0%
!! ATTAAATTTCTTAGAAGTGC+AGG + chr4_4:2591490-2591509 Msa0663690:intron 25.0%
!!! GTTCTTTCATTTGTTGTTTT+TGG + chr4_4:2591774-2591793 Msa0663690:intron 25.0%
! TAGTATGATTATATTCCCTT+GGG - chr4_4:2591923-2591942 None:intergenic 25.0%
! TTAGTATGATTATATTCCCT+TGG - chr4_4:2591924-2591943 None:intergenic 25.0%
! TTCTCGAATTAGAAATATAG+GGG - chr4_4:2591998-2592017 None:intergenic 25.0%
! CATTCTCGAATTAGAAATAT+AGG - chr4_4:2592000-2592019 None:intergenic 25.0%
!! TTATATTGTGCTATTGGTAA+TGG - chr4_4:2592034-2592053 None:intergenic 25.0%
!! TTTGGTTTATATTGTGCTAT+TGG - chr4_4:2592040-2592059 None:intergenic 25.0%
!! TCAAGTTTTACTATTTACTG+CGG - chr4_4:2592154-2592173 None:intergenic 25.0%
! GAAATGTGAGTTTCTTAATA+TGG + chr4_4:2592213-2592232 Msa0663690:intron 25.0%
!! TTCTATTACTACTATTTTGC+AGG + chr4_4:2592316-2592335 Msa0663690:intron 25.0%
! ATAAATATATAGCTGTACCA+GGG - chr4_4:2592773-2592792 None:intergenic 25.0%
! TATAAATATATAGCTGTACC+AGG - chr4_4:2592774-2592793 None:intergenic 25.0%
! ATCATGTATCACAGATTATT+AGG - chr4_4:2592855-2592874 None:intergenic 25.0%
! TGTTAATATTAGATAACTGG+TGG - chr4_4:2592982-2593001 None:intergenic 25.0%
!! TGGTGTTAATATTAGATAAC+TGG - chr4_4:2592985-2593004 None:intergenic 25.0%
! TCAGTATATGTAACAACAAT+AGG + chr4_4:2593024-2593043 Msa0663690:intron 25.0%
! AATGAGAAATAGAGGAAATA+TGG - chr4_4:2593127-2593146 None:intergenic 25.0%
! CACAAAGAATTATCAAAATC+TGG + chr4_4:2593181-2593200 Msa0663690:intron 25.0%
! AGATAATATGCAATAAGGTA+AGG - chr4_4:2593216-2593235 None:intergenic 25.0%
! GATACAGATAATATGCAATA+AGG - chr4_4:2593221-2593240 None:intergenic 25.0%
!! ATTGGCAAATAAAAGCATAT+TGG - chr4_4:2593390-2593409 None:intergenic 25.0%
! TCACAGTTAGTAAGAAAATA+AGG - chr4_4:2593555-2593574 None:intergenic 25.0%
! AAGCCAATAGATATTAGATA+AGG - chr4_4:2593591-2593610 None:intergenic 25.0%
! TTATTTCAACCATAGCAAAA+AGG - chr4_4:2593751-2593770 None:intergenic 25.0%
!! AGCCAAATTTTCATTATAGT+GGG + chr4_4:2593914-2593933 Msa0663690:intron 25.0%
! AACCCACTATAATGAAAATT+TGG - chr4_4:2593919-2593938 None:intergenic 25.0%
!!! TCATTATAGTGGGTTATTAT+AGG + chr4_4:2593924-2593943 Msa0663690:intron 25.0%
! ACATTAATTAAACTGTGCAT+GGG - chr4_4:2594393-2594412 None:intergenic 25.0%
! TACATTAATTAAACTGTGCA+TGG - chr4_4:2594394-2594413 None:intergenic 25.0%
! GTGTATGACATATATTATTC+AGG - chr4_4:2595469-2595488 Msa0663700:intron 25.0%
! TGAGAAAATAAAGAGTTAGA+AGG + chr4_4:2595499-2595518 Msa0663690:intron 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG - chr4_4:2595585-2595604 Msa0663700:CDS 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG - chr4_4:2595586-2595605 Msa0663700:CDS 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG + chr4_4:2595617-2595636 Msa0663690:three_prime_UTR 25.0%
! TCCATAGTAATAGCTATTAT+GGG - chr4_4:2595955-2595974 Msa0663700:CDS 25.0%
! TTCCATAGTAATAGCTATTA+TGG - chr4_4:2595956-2595975 Msa0663700:CDS 25.0%
!!! GTTTTATAGGTGTTATAAAG+AGG + chr4_4:2596339-2596358 Msa0663690:intron 25.0%
! CATAGACAGTAACAAAATTT+GGG + chr4_4:2596431-2596450 Msa0663690:three_prime_UTR 25.0%
! ATAGACAGTAACAAAATTTG+GGG + chr4_4:2596432-2596451 Msa0663690:three_prime_UTR 25.0%
! AATTCACATTTCTTGTATTG+TGG - chr4_4:2596617-2596636 Msa0663700:CDS 25.0%
! TGATGAAGAAGCTTCTTTTT+CGG - chr4_4:2588895-2588914 None:intergenic 30.0%
TAAACAGATACACCTGATTT+AGG - chr4_4:2588939-2588958 None:intergenic 30.0%
GAGTGTAAGTAGTTTATGTT+TGG + chr4_4:2589104-2589123 Msa0663690:intron 30.0%
GTTCTATGTAGTACATATCA+CGG - chr4_4:2589402-2589421 None:intergenic 30.0%
!! TAGAACTAGTCTTATCACTA+TGG + chr4_4:2589416-2589435 Msa0663690:intron 30.0%
CTGTCAAAATCTTTATGTTG+CGG + chr4_4:2589496-2589515 Msa0663690:intron 30.0%
GGATTCAAATATTGATCAAC+TGG - chr4_4:2589618-2589637 None:intergenic 30.0%
! AAATTTAAAATCGGAGCTGT+TGG + chr4_4:2589685-2589704 Msa0663690:intron 30.0%
! AATTTAAAATCGGAGCTGTT+GGG + chr4_4:2589686-2589705 Msa0663690:intron 30.0%
! TTGCTATTATTATGGATGCA+TGG + chr4_4:2589797-2589816 Msa0663690:intron 30.0%
CTAAAGTCACCAAATATCAA+CGG - chr4_4:2589918-2589937 None:intergenic 30.0%
CAAAATGTAGACAATCGAAA+GGG + chr4_4:2590026-2590045 Msa0663690:intron 30.0%
AGGAACAAAAAAGATCAGAA+TGG - chr4_4:2590254-2590273 None:intergenic 30.0%
!!! ATTCTGATCTTTTTTGTTCC+TGG + chr4_4:2590253-2590272 Msa0663690:intron 30.0%
!!! TTCTGATCTTTTTTGTTCCT+GGG + chr4_4:2590254-2590273 Msa0663690:intron 30.0%
CTTATATGAAGAAATGTTGC+TGG - chr4_4:2590301-2590320 None:intergenic 30.0%
CAGCAACATTTCTTCATATA+AGG + chr4_4:2590299-2590318 Msa0663690:CDS 30.0%
TTTGGTCCTTCATTGTATAT+AGG + chr4_4:2590382-2590401 Msa0663690:intron 30.0%
CATAGACCTATATACAATGA+AGG - chr4_4:2590391-2590410 None:intergenic 30.0%
TTGTAGCTAAGCTAATATGA+TGG + chr4_4:2590617-2590636 Msa0663690:intron 30.0%
TGTAGCTAAGCTAATATGAT+GGG + chr4_4:2590618-2590637 Msa0663690:intron 30.0%
GAAGATCCCTTGAAATATTT+AGG - chr4_4:2590749-2590768 None:intergenic 30.0%
!!! TAGATTTGGGACTTTTTTGT+AGG + chr4_4:2590948-2590967 Msa0663690:intron 30.0%
! CCAATAGTGTGATCATTTTA+TGG - chr4_4:2591095-2591114 None:intergenic 30.0%
CCATAAAATGATCACACTAT+TGG + chr4_4:2591092-2591111 Msa0663690:intron 30.0%
ATGAAACTTCAGAATATGAC+AGG - chr4_4:2591180-2591199 None:intergenic 30.0%
CATCTTCAAAGTCAAAATCA+AGG - chr4_4:2591300-2591319 None:intergenic 30.0%
TTAATGAATATGTAGAGCGA+TGG - chr4_4:2591538-2591557 None:intergenic 30.0%
! TGGTTATATTGAGAAGTATG+TGG + chr4_4:2591576-2591595 Msa0663690:CDS 30.0%
! ATATTGAGAAGTATGTGGTA+TGG + chr4_4:2591581-2591600 Msa0663690:intron 30.0%
CATTCTTATCTGTATTAGCT+TGG + chr4_4:2591676-2591695 Msa0663690:intron 30.0%
!!! GACGTTTATTTTTTCTCCAT+TGG + chr4_4:2591719-2591738 Msa0663690:intron 30.0%
TGCACATTATTTATCACCAA+TGG - chr4_4:2591738-2591757 None:intergenic 30.0%
AATTTATACTGTCAAACCCA+AGG + chr4_4:2591904-2591923 Msa0663690:intron 30.0%
ATTTATACTGTCAAACCCAA+GGG + chr4_4:2591905-2591924 Msa0663690:intron 30.0%
! ACAGGGATTATTCTTTCTTT+TGG - chr4_4:2592058-2592077 None:intergenic 30.0%
TTCAGTATAATACAGCTGTA+GGG - chr4_4:2592081-2592100 None:intergenic 30.0%
GAGTAAATTGAGAAAGAAAG+CGG - chr4_4:2592549-2592568 None:intergenic 30.0%
CCACTGTAATTGACAATATA+AGG - chr4_4:2592732-2592751 None:intergenic 30.0%
CCTTATATTGTCAATTACAG+TGG + chr4_4:2592729-2592748 Msa0663690:CDS 30.0%
GAGAAGTTGTGTTAAAAGAA+AGG + chr4_4:2592932-2592951 Msa0663690:intron 30.0%
ATTGTCAATATGAAAAAGGG+AGG + chr4_4:2593270-2593289 Msa0663690:intron 30.0%
! TAGGGCATCATTCATATAAT+TGG - chr4_4:2593408-2593427 None:intergenic 30.0%
!! TAATATCTATTGGCTTGTCT+AGG + chr4_4:2593595-2593614 Msa0663690:intron 30.0%
GTAAAATTTACACATTCCTG+TGG + chr4_4:2593799-2593818 Msa0663690:intron 30.0%
GCACATTAGGGAATATAATT+GGG - chr4_4:2593853-2593872 None:intergenic 30.0%
TGCACATTAGGGAATATAAT+TGG - chr4_4:2593854-2593873 None:intergenic 30.0%
GTTGGTATTTATGCACATTA+GGG - chr4_4:2593865-2593884 None:intergenic 30.0%
! GAGCCAAATTTTCATTATAG+TGG + chr4_4:2593913-2593932 Msa0663690:intron 30.0%
!! GTTGGTAACAGATTTAAAAC+TGG - chr4_4:2593981-2594000 None:intergenic 30.0%
CATTAATTAAACTGTGCATG+GGG - chr4_4:2594392-2594411 None:intergenic 30.0%
! ATACAGTGTGACAAACATTT+TGG - chr4_4:2594613-2594632 None:intergenic 30.0%
ATATTACGAATCTGATTACC+CGG - chr4_4:2594956-2594975 Msa0663700:CDS 30.0%
AGAGAAGACTTACATAGTTA+GGG - chr4_4:2595373-2595392 Msa0663700:CDS 30.0%
GTCTTCTCTGTATATAAACT+CGG + chr4_4:2595384-2595403 Msa0663690:three_prime_UTR 30.0%
CCTTGTGTTATAAATGCAAT+TGG - chr4_4:2595827-2595846 Msa0663700:intron 30.0%
CCAATTGCATTTATAACACA+AGG + chr4_4:2595824-2595843 Msa0663690:intron 30.0%
CCATAGTAATAGCTATTATG+GGG - chr4_4:2595954-2595973 Msa0663700:CDS 30.0%
AAGCAAAACAGAAGGATATT+TGG + chr4_4:2596034-2596053 Msa0663690:intron 30.0%
TTGTAGATTCACTTGATGTT+GGG - chr4_4:2596148-2596167 Msa0663700:intron 30.0%
ATTGTAGATTCACTTGATGT+TGG - chr4_4:2596149-2596168 Msa0663700:intron 30.0%
TCTGATCTTCATATCAAAGT+CGG - chr4_4:2596212-2596231 Msa0663700:intron 30.0%
ATGGCTAATGTGAAAAACAT+AGG + chr4_4:2596260-2596279 Msa0663690:intron 30.0%
! ATTTTGTTACTGTCTATGGT+GGG - chr4_4:2596429-2596448 Msa0663700:CDS 30.0%
! AATTTTGTTACTGTCTATGG+TGG - chr4_4:2596430-2596449 Msa0663700:CDS 30.0%
! CCAAATTTTGTTACTGTCTA+TGG - chr4_4:2596433-2596452 Msa0663700:CDS 30.0%
CCATAGACAGTAACAAAATT+TGG + chr4_4:2596430-2596449 Msa0663690:three_prime_UTR 30.0%
AAATTTGGGGAAAACTTCTA+TGG + chr4_4:2596445-2596464 Msa0663690:three_prime_UTR 30.0%
!! GATAACTCAGCTTTTAACTA+TGG - chr4_4:2596509-2596528 Msa0663700:CDS 30.0%
! AAATTGGCTCAGCACAAATA+TGG - chr4_4:2588696-2588715 None:intergenic 35.0%
! CTCAATTTTGCTCTTCAAGA+TGG + chr4_4:2589005-2589024 Msa0663690:CDS 35.0%
!!! AATTTTCGGTGTCTACATGT+CGG - chr4_4:2589289-2589308 None:intergenic 35.0%
TGTCATATTACTCAGTGTAG+TGG + chr4_4:2589349-2589368 Msa0663690:intron 35.0%
CAAGCTAATGCATGAATACA+AGG - chr4_4:2589592-2589611 None:intergenic 35.0%
AAATCAGAGTCATCCAATGT+TGG - chr4_4:2589639-2589658 None:intergenic 35.0%
! CTATTGACTATGTGAACACA+TGG + chr4_4:2589730-2589749 Msa0663690:intron 35.0%
ATGGATTCTTTGACTGTAGT+AGG + chr4_4:2589749-2589768 Msa0663690:intron 35.0%
GATTCTCTACCGTTGATATT+TGG + chr4_4:2589906-2589925 Msa0663690:intron 35.0%
! TTGGTGACTTTAGTGTACTT+AGG + chr4_4:2589925-2589944 Msa0663690:intron 35.0%
TGGTGACTTTAGTGTACTTA+GGG + chr4_4:2589926-2589945 Msa0663690:intron 35.0%
! CCTTTCGATTGTCTACATTT+TGG - chr4_4:2590028-2590047 None:intergenic 35.0%
CCAAAATGTAGACAATCGAA+AGG + chr4_4:2590025-2590044 Msa0663690:intron 35.0%
!!! TCTGATCTTTTTTGTTCCTG+GGG + chr4_4:2590255-2590274 Msa0663690:intron 35.0%
! TAAGGTACTATTCTTTGCTC+TGG + chr4_4:2590317-2590336 Msa0663690:intron 35.0%
! ATTGACAGTTGACGTTTTTG+AGG + chr4_4:2590681-2590700 Msa0663690:intron 35.0%
! TTTTCTTACTATGCAAGCTC+TGG - chr4_4:2590843-2590862 None:intergenic 35.0%
!! GAAGTACTTGTTGCTTTGAA+AGG - chr4_4:2590887-2590906 None:intergenic 35.0%
!!! GAAGCTTTTCTGGTTTATCA+GGG - chr4_4:2590978-2590997 None:intergenic 35.0%
! GACTTTGAAGATGAGAATGA+AGG + chr4_4:2591307-2591326 Msa0663690:CDS 35.0%
! TAGCTTGGTCTTTGATTCTT+TGG + chr4_4:2591691-2591710 Msa0663690:intron 35.0%
! TTGGTCTTTGATTCTTTGGT+AGG + chr4_4:2591695-2591714 Msa0663690:intron 35.0%
AATCATACTAAGAACACCTG+AGG + chr4_4:2591933-2591952 Msa0663690:intron 35.0%
CTTCAGTATAATACAGCTGT+AGG - chr4_4:2592082-2592101 None:intergenic 35.0%
!! TGACTTTTGATAGCCTTTGT+TGG + chr4_4:2592189-2592208 Msa0663690:intron 35.0%
AACTCACATTTCACCAACAA+AGG - chr4_4:2592205-2592224 None:intergenic 35.0%
AACACGTTAATTATGTGCAC+TGG + chr4_4:2592260-2592279 Msa0663690:intron 35.0%
!! AATAAAAGTGTTGGGGTTGA+TGG - chr4_4:2592353-2592372 None:intergenic 35.0%
ATCTTGAGCTAGATACACTA+CGG + chr4_4:2592375-2592394 Msa0663690:CDS 35.0%
AAGCGGTATTGCAAATCTTT+GGG - chr4_4:2592532-2592551 None:intergenic 35.0%
AAAGCGGTATTGCAAATCTT+TGG - chr4_4:2592533-2592552 None:intergenic 35.0%
TTACTCCAGTGTTCTACATT+CGG + chr4_4:2592563-2592582 Msa0663690:CDS 35.0%
TCGGATCAGAGATTATTCAA+AGG + chr4_4:2592582-2592601 Msa0663690:CDS 35.0%
AGGGACTATTCAATAGAGAA+GGG - chr4_4:2592612-2592631 None:intergenic 35.0%
TAGGGACTATTCAATAGAGA+AGG - chr4_4:2592613-2592632 None:intergenic 35.0%
TATTAACACCAGATCTTGCA+AGG + chr4_4:2592994-2593013 Msa0663690:intron 35.0%
AAAATCTTCCTTGCAAGATC+TGG - chr4_4:2593005-2593024 None:intergenic 35.0%
TAATTACTCCCATGCCAAAA+GGG - chr4_4:2593083-2593102 None:intergenic 35.0%
GAGTAATTAGTAAGGGAAAG+AGG + chr4_4:2593094-2593113 Msa0663690:intron 35.0%
TAGTAAGGGAAAGAGGAATA+TGG + chr4_4:2593101-2593120 Msa0663690:intron 35.0%
TGTGACTTACTTCAAGTCAA+AGG - chr4_4:2593165-2593184 None:intergenic 35.0%
TGTATCACCTGAAAAAAGCA+GGG + chr4_4:2593235-2593254 Msa0663690:intron 35.0%
TACACAAGCATAAGAACCAT+CGG - chr4_4:2593481-2593500 None:intergenic 35.0%
TCATGAACTTACTTCACCAA+GGG - chr4_4:2593526-2593545 None:intergenic 35.0%
TTCATGAACTTACTTCACCA+AGG - chr4_4:2593527-2593546 None:intergenic 35.0%
ATGCATAAAAGCAACGCAAA+CGG - chr4_4:2593720-2593739 None:intergenic 35.0%
! GGTTGGTATTTATGCACATT+AGG - chr4_4:2593866-2593885 None:intergenic 35.0%
! TTAAAACTGGACTAGAGACA+TGG - chr4_4:2593968-2593987 None:intergenic 35.0%
ACTGCAATATCACAAGATGT+TGG - chr4_4:2593999-2594018 None:intergenic 35.0%
!! ATTTGGAAGTATCATCTGCA+TGG + chr4_4:2594046-2594065 Msa0663690:CDS 35.0%
! ACTTTTGCCAAAGAAATACG+AGG + chr4_4:2594198-2594217 Msa0663690:three_prime_UTR 35.0%
CCAAGTTTAACACATCTACA+TGG - chr4_4:2594506-2594525 None:intergenic 35.0%
CCATGTAGATGTGTTAAACT+TGG + chr4_4:2594503-2594522 Msa0663690:three_prime_UTR 35.0%
!! TAGGCTTGTTGAATTTCGAT+AGG - chr4_4:2594563-2594582 None:intergenic 35.0%
!! GTGGTTAGCCTATAAATACA+TGG - chr4_4:2594589-2594608 None:intergenic 35.0%
TACAAATAGTGTCATGCTGA+AGG + chr4_4:2594673-2594692 Msa0663690:three_prime_UTR 35.0%
TGAAGAAGTTCTTGCTTATG+AGG - chr4_4:2594739-2594758 None:intergenic 35.0%
ATACAACAGTCTATGCTTCT+CGG - chr4_4:2594870-2594889 Msa0663700:CDS 35.0%
CCTCAAAGTTCGTCAAAATT+TGG - chr4_4:2594898-2594917 Msa0663700:CDS 35.0%
!! CCAAATTTTGACGAACTTTG+AGG + chr4_4:2594895-2594914 Msa0663690:three_prime_UTR 35.0%
TATTACGAATCTGATTACCC+GGG - chr4_4:2594955-2594974 Msa0663700:CDS 35.0%
CAATCTATATTCAAGCTGCA+TGG - chr4_4:2595020-2595039 Msa0663700:CDS 35.0%
TCCATTGTTGCGAATAGAAA+CGG + chr4_4:2595052-2595071 Msa0663690:three_prime_UTR 35.0%
TAGACACATACATAGTAGAC+AGG - chr4_4:2595091-2595110 Msa0663700:CDS 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG - chr4_4:2595252-2595271 Msa0663700:CDS 35.0%
ATGAACAACATCTCATCAAC+TGG + chr4_4:2595339-2595358 Msa0663690:three_prime_UTR 35.0%
AAGACTTACATAGTTAGGGA+AGG - chr4_4:2595369-2595388 Msa0663700:CDS 35.0%
CAGAGAAGACTTACATAGTT+AGG - chr4_4:2595374-2595393 Msa0663700:CDS 35.0%
TGCAATGAGAAATCTCAGAA+AGG + chr4_4:2595535-2595554 Msa0663690:intron 35.0%
CCCCATAATAGCTATTACTA+TGG + chr4_4:2595951-2595970 Msa0663690:three_prime_UTR 35.0%
!! TTTGCTTTTCACAGTACACT+TGG - chr4_4:2596021-2596040 Msa0663700:intron 35.0%
ACTGTGAAAAGCAAAACAGA+AGG + chr4_4:2596026-2596045 Msa0663690:intron 35.0%
! TTTTCACATTAGCCATGTAG+AGG - chr4_4:2596256-2596275 Msa0663700:intron 35.0%
TGTTATAAAGAGGACTCATG+TGG + chr4_4:2596349-2596368 Msa0663690:intron 35.0%
! TTTTGTTACTGTCTATGGTG+GGG - chr4_4:2596428-2596447 Msa0663700:CDS 35.0%
GTTCAAGTAAGCATATACCA+GGG - chr4_4:2596592-2596611 Msa0663700:CDS 35.0%
AGTTCAAGTAAGCATATACC+AGG - chr4_4:2596593-2596612 Msa0663700:CDS 35.0%
TAGCATTGTGTTGTGTTGTG+TGG - chr4_4:2588724-2588743 None:intergenic 40.0%
CAACACAATGCTACTATCCA+TGG + chr4_4:2588731-2588750 Msa0663690:exon 40.0%
AATGCTACTATCCATGGCTA+TGG + chr4_4:2588737-2588756 Msa0663690:exon 40.0%
GATGTGAAGGAAGAAAAGTG+AGG - chr4_4:2588785-2588804 None:intergenic 40.0%
!! GATAGTGGAGAAAGATGTGA+AGG - chr4_4:2588798-2588817 None:intergenic 40.0%
GAAGAAGGTGAAGAAGATAG+TGG - chr4_4:2588813-2588832 None:intergenic 40.0%
TTAGGATCGAAACCACGATT+TGG - chr4_4:2588921-2588940 None:intergenic 40.0%
GCGAGAACTTCATAAGACTT+AGG - chr4_4:2588966-2588985 None:intergenic 40.0%
GTACATATCACGGACACTTA+CGG - chr4_4:2589392-2589411 None:intergenic 40.0%
!! GCTGTTGGGTATTGATTCTA+TGG + chr4_4:2589700-2589719 Msa0663690:intron 40.0%
GGTGACTTTAGTGTACTTAG+GGG + chr4_4:2589927-2589946 Msa0663690:intron 40.0%
AAGTAGGCATAGATGAACTG+AGG - chr4_4:2590553-2590572 None:intergenic 40.0%
TGCCAACATTCAACTTGTCT+TGG + chr4_4:2590784-2590803 Msa0663690:CDS 40.0%
! AGCCAAGACAAGTTGAATGT+TGG - chr4_4:2590789-2590808 None:intergenic 40.0%
GGCTGTTGTAAAAAAGCTAC+AGG + chr4_4:2590805-2590824 Msa0663690:CDS 40.0%
TCCGAGATGTCACTAGATTT+GGG + chr4_4:2590935-2590954 Msa0663690:intron 40.0%
TCCCAAATCTAGTGACATCT+CGG - chr4_4:2590939-2590958 None:intergenic 40.0%
!!! CGAAGCTTTTCTGGTTTATC+AGG - chr4_4:2590979-2590998 None:intergenic 40.0%
!! AAGGTTGATGGCCTTACTAT+AGG + chr4_4:2591214-2591233 Msa0663690:intron 40.0%
CATCTAAGGAGCCTATAGTA+AGG - chr4_4:2591228-2591247 None:intergenic 40.0%
GATCTGAAAAATGAAGCCAC+AGG - chr4_4:2591265-2591284 None:intergenic 40.0%
! AGAATGAAGGTTAGCTCTTG+CGG + chr4_4:2591320-2591339 Msa0663690:intron 40.0%
ATGAATATGTAGAGCGATGG+AGG - chr4_4:2591535-2591554 None:intergenic 40.0%
AATAGCAGTACACGTGAACT+TGG + chr4_4:2591556-2591575 Msa0663690:CDS 40.0%
CATGAAACCTTTAATGGCAG+AGG - chr4_4:2591609-2591628 None:intergenic 40.0%
AACACCTGAGGAACAAAAGA+GGG + chr4_4:2591945-2591964 Msa0663690:intron 40.0%
AGCTACCGGAAAATTGATAG+AGG + chr4_4:2591968-2591987 Msa0663690:intron 40.0%
! GCACACCTCTATCAATTTTC+CGG - chr4_4:2591976-2591995 None:intergenic 40.0%
ATAATACAGCTGTAGGGACA+GGG - chr4_4:2592075-2592094 None:intergenic 40.0%
TATAATACAGCTGTAGGGAC+AGG - chr4_4:2592076-2592095 None:intergenic 40.0%
! GATCAAGTTGTGTGGTCAAT+TGG - chr4_4:2592118-2592137 None:intergenic 40.0%
TACTATTTACTGCGGTCACT+GGG - chr4_4:2592146-2592165 None:intergenic 40.0%
TTACTATTTACTGCGGTCAC+TGG - chr4_4:2592147-2592166 None:intergenic 40.0%
GTAAAACTTGATGTAGGCTC+TGG + chr4_4:2592163-2592182 Msa0663690:intron 40.0%
GTCTAAGTCCTTAACTACGT+CGG + chr4_4:2592439-2592458 Msa0663690:intron 40.0%
ATAAGTGTCCGACGTAGTTA+AGG - chr4_4:2592450-2592469 None:intergenic 40.0%
!! TGAATTCGCAGTGCTGATTT+AGG + chr4_4:2592490-2592509 Msa0663690:intron 40.0%
GGTATTGCAAATCTTTGGGT+GGG - chr4_4:2592528-2592547 None:intergenic 40.0%
GGACTATTCAATAGAGAAGG+GGG - chr4_4:2592610-2592629 None:intergenic 40.0%
GGGACTATTCAATAGAGAAG+GGG - chr4_4:2592611-2592630 None:intergenic 40.0%
! GTGCTTACATACTTCCCTTT+TGG + chr4_4:2593066-2593085 Msa0663690:intron 40.0%
! TACATACTTCCCTTTTGGCA+TGG + chr4_4:2593071-2593090 Msa0663690:intron 40.0%
! ACATACTTCCCTTTTGGCAT+GGG + chr4_4:2593072-2593091 Msa0663690:intron 40.0%
CTAATTACTCCCATGCCAAA+AGG - chr4_4:2593084-2593103 None:intergenic 40.0%
TGGCATGGGAGTAATTAGTA+AGG + chr4_4:2593086-2593105 Msa0663690:intron 40.0%
GGCATGGGAGTAATTAGTAA+GGG + chr4_4:2593087-2593106 Msa0663690:intron 40.0%
CCACGTCAAATGAGAAATAG+AGG - chr4_4:2593135-2593154 None:intergenic 40.0%
! CCTCTATTTCTCATTTGACG+TGG + chr4_4:2593132-2593151 Msa0663690:intron 40.0%
CTGTATCACCTGAAAAAAGC+AGG + chr4_4:2593234-2593253 Msa0663690:intron 40.0%
!!! ATCTATGCCCTGCTTTTTTC+AGG - chr4_4:2593245-2593264 None:intergenic 40.0%
AGGCCAAAGAAGAATTGTTG+AGG + chr4_4:2593615-2593634 Msa0663690:intron 40.0%
GGCCAAAGAAGAATTGTTGA+GGG + chr4_4:2593616-2593635 Msa0663690:intron 40.0%
GACCCTCAACAATTCTTCTT+TGG - chr4_4:2593621-2593640 None:intergenic 40.0%
! TGCTTGTGTCCTTTTTGCTA+TGG + chr4_4:2593739-2593758 Msa0663690:intron 40.0%
GTGGGAAGAAGATTCTGATT+TGG + chr4_4:2594029-2594048 Msa0663690:CDS 40.0%
! CTGTGTTTTATCACACGCAA+TGG + chr4_4:2594101-2594120 Msa0663690:three_prime_UTR 40.0%
TGCTCATATGCAGAGAAAGA+AGG + chr4_4:2594132-2594151 Msa0663690:three_prime_UTR 40.0%
GCTTTGTCCTCGTATTTCTT+TGG - chr4_4:2594208-2594227 None:intergenic 40.0%
GCAAACACACTGTTGTAACT+AGG + chr4_4:2594226-2594245 Msa0663690:three_prime_UTR 40.0%
GCCTAGAGCCATGTATTTAT+AGG + chr4_4:2594578-2594597 Msa0663690:three_prime_UTR 40.0%
GCCTATAAATACATGGCTCT+AGG - chr4_4:2594582-2594601 None:intergenic 40.0%
!! GTGTGACAAACATTTTGGTG+TGG - chr4_4:2594608-2594627 None:intergenic 40.0%
!! TCATTGAGAGCACTGAAATC+AGG + chr4_4:2594766-2594785 Msa0663690:three_prime_UTR 40.0%
TCTATATTCAAGCTGCATGG+AGG - chr4_4:2595017-2595036 Msa0663700:CDS 40.0%
TTCGCAACAATGGAGAACAT+GGG - chr4_4:2595046-2595065 Msa0663700:CDS 40.0%
ATTCGCAACAATGGAGAACA+TGG - chr4_4:2595047-2595066 Msa0663700:CDS 40.0%
TCCGTTTCTATTCGCAACAA+TGG - chr4_4:2595056-2595075 Msa0663700:CDS 40.0%
TACCTCACTCATAGCTTTCA+CGG + chr4_4:2595161-2595180 Msa0663690:three_prime_UTR 40.0%
! TTCACGGTTCTTGTTGATGA+TGG + chr4_4:2595177-2595196 Msa0663690:three_prime_UTR 40.0%
TGGTGAAGAGTTGCTAACAT+GGG - chr4_4:2595232-2595251 Msa0663700:CDS 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG - chr4_4:2595264-2595283 Msa0663700:CDS 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG - chr4_4:2595268-2595287 Msa0663700:CDS 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG - chr4_4:2595306-2595325 Msa0663700:CDS 40.0%
GAGATGTTGTTCATCATTCG+TGG - chr4_4:2595333-2595352 Msa0663700:CDS 40.0%
AGGGGTCGATGAAGAAAATT+TGG - chr4_4:2595654-2595673 Msa0663700:CDS 40.0%
! AATTTTCTTCATCGACCCCT+CGG + chr4_4:2595654-2595673 Msa0663690:three_prime_UTR 40.0%
TGGAGGAAATGAGGATCAAA+AGG - chr4_4:2595772-2595791 Msa0663700:CDS 40.0%
! AACCGACATTGATTGAAGGT+AGG + chr4_4:2595796-2595815 Msa0663690:three_prime_UTR 40.0%
GACCTACCTTCAATCAATGT+CGG - chr4_4:2595801-2595820 Msa0663700:intron 40.0%
TCTTCTGATTGGAAACATGC+AGG - chr4_4:2595917-2595936 Msa0663700:CDS 40.0%
ATGGAAAACAAAACCTCTCC+AGG + chr4_4:2595970-2595989 Msa0663690:three_prime_UTR 40.0%
TGGAAAACAAAACCTCTCCA+GGG + chr4_4:2595971-2595990 Msa0663690:three_prime_UTR 40.0%
TTTCACAGTACACTTGGTCA+GGG - chr4_4:2596015-2596034 Msa0663700:intron 40.0%
! TTTTCACAGTACACTTGGTC+AGG - chr4_4:2596016-2596035 Msa0663700:intron 40.0%
TGAAGATCAGACACACGATA+TGG + chr4_4:2596221-2596240 Msa0663690:intron 40.0%
GAAGATCAGACACACGATAT+GGG + chr4_4:2596222-2596241 Msa0663690:intron 40.0%
ATATACCAGGGTATGACAGT+TGG - chr4_4:2596580-2596599 Msa0663700:CDS 40.0%
! GTGTTGTGTGGCACTGAAAT+TGG - chr4_4:2588712-2588731 None:intergenic 45.0%
AGATGACATAGCCATAGCCA+TGG - chr4_4:2588751-2588770 None:intergenic 45.0%
GGAAGAAAAGTGAGGTTGTG+AGG - chr4_4:2588777-2588796 None:intergenic 45.0%
TCTTCATCAGAGCCAAATCG+TGG + chr4_4:2588906-2588925 Msa0663690:CDS 45.0%
CGTGGTTTCGATCCTAAATC+AGG + chr4_4:2588924-2588943 Msa0663690:CDS 45.0%
CAAGAACGTTGCGTTTAGGA+CGG - chr4_4:2590065-2590084 None:intergenic 45.0%
AGAGCAAGAACGTTGCGTTT+AGG - chr4_4:2590069-2590088 None:intergenic 45.0%
GAAGAAATGTTGCTGGGCAA+GGG - chr4_4:2590294-2590313 None:intergenic 45.0%
TGAAGAAATGTTGCTGGGCA+AGG - chr4_4:2590295-2590314 None:intergenic 45.0%
! TCGCATGCCTTTGTTTACCA+TGG + chr4_4:2590495-2590514 Msa0663690:intron 45.0%
CTCCGAGATGTCACTAGATT+TGG + chr4_4:2590934-2590953 Msa0663690:intron 45.0%
! AGCTGCTTTGAACAACTGAG+AGG - chr4_4:2591004-2591023 None:intergenic 45.0%
TCAGTTGTTCAAAGCAGCTC+TGG + chr4_4:2591005-2591024 Msa0663690:CDS 45.0%
TCCTTAGATGATATCCCTGC+AGG + chr4_4:2591238-2591257 Msa0663690:CDS 45.0%
TCCTGCAGGGATATCATCTA+AGG - chr4_4:2591242-2591261 None:intergenic 45.0%
! GAATGAAGGTTAGCTCTTGC+GGG + chr4_4:2591321-2591340 Msa0663690:intron 45.0%
! TTCTTAGAAGTGCAGGTCGT+TGG + chr4_4:2591497-2591516 Msa0663690:intron 45.0%
TATGGTGCCTCTGCCATTAA+AGG + chr4_4:2591599-2591618 Msa0663690:intron 45.0%
ACTCACTCTTAGCTCCTGAT+TGG + chr4_4:2591852-2591871 Msa0663690:intron 45.0%
CTCACTCTTAGCTCCTGATT+GGG + chr4_4:2591853-2591872 Msa0663690:intron 45.0%
TCACTCTTAGCTCCTGATTG+GGG + chr4_4:2591854-2591873 Msa0663690:intron 45.0%
!! TTAGCTTGTACACCCCAATC+AGG - chr4_4:2591869-2591888 None:intergenic 45.0%
GAACACCTGAGGAACAAAAG+AGG + chr4_4:2591944-2591963 Msa0663690:intron 45.0%
!! AGTGCTGATTTAGGCCTTCT+AGG + chr4_4:2592499-2592518 Msa0663690:intron 45.0%
CGGTATTGCAAATCTTTGGG+TGG - chr4_4:2592529-2592548 None:intergenic 45.0%
CTGATCCGAATGTAGAACAC+TGG - chr4_4:2592571-2592590 None:intergenic 45.0%
ATATAGCTGTACCAGGGTAC+TGG - chr4_4:2592767-2592786 None:intergenic 45.0%
! AGCTATCTGGTGTTAACTGC+TGG - chr4_4:2593341-2593360 None:intergenic 45.0%
TCATAAATCGTTCAGGTCCC+TGG + chr4_4:2593436-2593455 Msa0663690:intron 45.0%
GTGATGCTTAAGCAAACCGA+TGG + chr4_4:2593462-2593481 Msa0663690:CDS 45.0%
GAAGAATTGTTGAGGGTCCT+TGG + chr4_4:2593623-2593642 Msa0663690:CDS 45.0%
CTTGGACTTCAAGAAGAGGA+GGG + chr4_4:2593641-2593660 Msa0663690:CDS 45.0%
TGATATTGCAGTCAAGCACG+TGG + chr4_4:2594007-2594026 Msa0663690:intron 45.0%
!! TGGAAGTATCATCTGCATGG+CGG + chr4_4:2594049-2594068 Msa0663690:CDS 45.0%
CCTCTAGCAATGTTCTACTC+AGG - chr4_4:2594076-2594095 None:intergenic 45.0%
CCTGAGTAGAACATTGCTAG+AGG + chr4_4:2594073-2594092 Msa0663690:exon 45.0%
GAGTAGAACATTGCTAGAGG+AGG + chr4_4:2594076-2594095 Msa0663690:exon 45.0%
GTATTTGTCAGCTGCAGTGT+TGG - chr4_4:2594639-2594658 None:intergenic 45.0%
! AGCACTGAAATCAGGTTCTG+AGG + chr4_4:2594774-2594793 Msa0663690:three_prime_UTR 45.0%
! GCACTGAAATCAGGTTCTGA+GGG + chr4_4:2594775-2594794 Msa0663690:three_prime_UTR 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG + chr4_4:2594781-2594800 Msa0663690:three_prime_UTR 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG + chr4_4:2594782-2594801 Msa0663690:three_prime_UTR 45.0%
TTCACCAGCTCTCTTGAACT+TGG + chr4_4:2594808-2594827 Msa0663690:three_prime_UTR 45.0%
AGTACCAAGTTCAAGAGAGC+TGG - chr4_4:2594815-2594834 Msa0663700:CDS 45.0%
! TTTGACGAACTTTGAGGACC+CGG + chr4_4:2594901-2594920 Msa0663690:three_prime_UTR 45.0%
GGGAAGTGATGATTCTGCAA+GGG - chr4_4:2594935-2594954 Msa0663700:CDS 45.0%
CTTGCAGAATCATCACTTCC+CGG + chr4_4:2594934-2594953 Msa0663690:three_prime_UTR 45.0%
TTGCAGAATCATCACTTCCC+GGG + chr4_4:2594935-2594954 Msa0663690:three_prime_UTR 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG - chr4_4:2595005-2595024 Msa0663700:CDS 45.0%
!! GGCATTTGCTTTAGAAGCAG+AGG - chr4_4:2595139-2595158 Msa0663700:CDS 45.0%
GAAAGCTATGAGTGAGGTAG+AGG - chr4_4:2595160-2595179 Msa0663700:CDS 45.0%
AACCGTGAAAGCTATGAGTG+AGG - chr4_4:2595166-2595185 Msa0663700:CDS 45.0%
AGAGTTGCTAACATGGGCAT+TGG - chr4_4:2595226-2595245 Msa0663700:CDS 45.0%
GTGGTGAAGAGTTGCTAACA+TGG - chr4_4:2595233-2595252 Msa0663700:CDS 45.0%
AGAAGTGGCTTCTTCAACAG+AGG - chr4_4:2595279-2595298 Msa0663700:CDS 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG - chr4_4:2595294-2595313 Msa0663700:CDS 45.0%
!! GAGAGTGTTACTACAGATGG+TGG - chr4_4:2595303-2595322 Msa0663700:CDS 45.0%
TCGTCCATGTTAGCAAAGAG+AGG + chr4_4:2595441-2595460 Msa0663690:three_prime_UTR 45.0%
GGTTCCTCTCTTTGCTAACA+TGG - chr4_4:2595448-2595467 Msa0663700:intron 45.0%
! ATTTTCTTCATCGACCCCTC+GGG + chr4_4:2595655-2595674 Msa0663690:three_prime_UTR 45.0%
GGGTGTTCAACCACTTGTAT+TGG + chr4_4:2595675-2595694 Msa0663690:three_prime_UTR 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG - chr4_4:2595792-2595811 Msa0663700:CDS 45.0%
! GACGAACCGACATTGATTGA+AGG + chr4_4:2595792-2595811 Msa0663690:three_prime_UTR 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG - chr4_4:2595928-2595947 Msa0663700:CDS 45.0%
AAACAAAACCTCTCCAGGGT+AGG + chr4_4:2595975-2595994 Msa0663690:three_prime_UTR 45.0%
TTCACAGTACACTTGGTCAG+GGG - chr4_4:2596014-2596033 Msa0663700:intron 45.0%
GGTGGGGACTTCAGAATTTA+AGG - chr4_4:2596412-2596431 Msa0663700:CDS 45.0%
TTTCTCCAACTGTCATACCC+TGG + chr4_4:2596572-2596591 Msa0663690:three_prime_UTR 45.0%
TGTTGCGGTTGTTGAGTGTG+AGG + chr4_4:2589511-2589530 Msa0663690:intron 50.0%
! TGCTTGCGGCTTTTATGTGC+TGG + chr4_4:2590224-2590243 Msa0663690:intron 50.0%
! GCTTGCGGCTTTTATGTGCT+GGG + chr4_4:2590225-2590244 Msa0663690:intron 50.0%
GTTCCTGGGGTTATGTATGC+AGG + chr4_4:2590268-2590287 Msa0663690:intron 50.0%
! TGAGAGGCTCGAAGCTTTTC+TGG - chr4_4:2590988-2591007 None:intergenic 50.0%
! GGTTAGCTCTTGCGGGAAAA+TGG + chr4_4:2591328-2591347 Msa0663690:intron 50.0%
! AGCTCCCTCTTTTGTTCCTC+AGG - chr4_4:2591952-2591971 None:intergenic 50.0%
GGAACAAAAGAGGGAGCTAC+CGG + chr4_4:2591954-2591973 Msa0663690:intron 50.0%
! GGGATAGGGATCAAGTTGTG+TGG - chr4_4:2592126-2592145 None:intergenic 50.0%
TTACTGCGGTCACTGGGATA+GGG - chr4_4:2592140-2592159 None:intergenic 50.0%
TTTACTGCGGTCACTGGGAT+AGG - chr4_4:2592141-2592160 None:intergenic 50.0%
TGCTTAAGCATCACCTGCCA+GGG - chr4_4:2593456-2593475 None:intergenic 50.0%
TTGCTTAAGCATCACCTGCC+AGG - chr4_4:2593457-2593476 None:intergenic 50.0%
GGTCCTTGGACTTCAAGAAG+AGG + chr4_4:2593637-2593656 Msa0663690:CDS 50.0%
CCTCCTCTTCTTGAAGTCCA+AGG - chr4_4:2593643-2593662 None:intergenic 50.0%
CCTTGGACTTCAAGAAGAGG+AGG + chr4_4:2593640-2593659 Msa0663690:CDS 50.0%
AAGATGCAGTGCAGAACCAC+AGG - chr4_4:2593818-2593837 None:intergenic 50.0%
TATTGCAGTCAAGCACGTGG+TGG + chr4_4:2594010-2594029 Msa0663690:intron 50.0%
ATTGCAGTCAAGCACGTGGT+GGG + chr4_4:2594011-2594030 Msa0663690:intron 50.0%
ATGCTGAAGGACAATCGCAG+CGG + chr4_4:2594686-2594705 Msa0663690:three_prime_UTR 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG - chr4_4:2594850-2594869 Msa0663700:CDS 50.0%
! TGATGATTCTGCAAGGGCGT+TGG - chr4_4:2594929-2594948 Msa0663700:CDS 50.0%
CGGGAAGTGATGATTCTGCA+AGG - chr4_4:2594936-2594955 Msa0663700:CDS 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG - chr4_4:2594989-2595008 Msa0663700:CDS 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG - chr4_4:2594993-2595012 Msa0663700:CDS 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG - chr4_4:2594999-2595018 Msa0663700:CDS 50.0%
!!! GGCAAGCTTGCTGCAGATTT+TGG + chr4_4:2595198-2595217 Msa0663690:three_prime_UTR 50.0%
ACAAGTGGTTGAACACCCGA+GGG - chr4_4:2595673-2595692 Msa0663700:CDS 50.0%
TACAAGTGGTTGAACACCCG+AGG - chr4_4:2595674-2595693 Msa0663700:CDS 50.0%
GACGCTACGACCAATACAAG+TGG - chr4_4:2595688-2595707 Msa0663700:CDS 50.0%
AGCGTCTGACTCTTTCCCTT+AGG + chr4_4:2595702-2595721 Msa0663690:three_prime_UTR 50.0%
CTGACTCTTTCCCTTAGGTC+CGG + chr4_4:2595707-2595726 Msa0663690:three_prime_UTR 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG - chr4_4:2595789-2595808 Msa0663700:CDS 50.0%
CTTCTGACTAGTACCTACCC+TGG - chr4_4:2595991-2596010 Msa0663700:CDS 50.0%
! CGTTGCGTTTAGGACGGAGA+GGG - chr4_4:2590059-2590078 None:intergenic 55.0%
! ACGTTGCGTTTAGGACGGAG+AGG - chr4_4:2590060-2590079 None:intergenic 55.0%
TGATATCCCTGCAGGACCTG+TGG + chr4_4:2591246-2591265 Msa0663690:CDS 55.0%
ATGAAGCCACAGGTCCTGCA+GGG - chr4_4:2591255-2591274 None:intergenic 55.0%
AATGAAGCCACAGGTCCTGC+AGG - chr4_4:2591256-2591275 None:intergenic 55.0%
CTTTGGGTGGGAAGCCTAGA+AGG - chr4_4:2592516-2592535 None:intergenic 55.0%
AAATCGTTCAGGTCCCTGGC+AGG + chr4_4:2593440-2593459 Msa0663690:intron 55.0%
AGTGCAACTCGCTTCACCCT+TGG + chr4_4:2593507-2593526 Msa0663690:CDS 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG - chr4_4:2594923-2594942 Msa0663700:CDS 55.0%
CAAGTGGTTGAACACCCGAG+GGG - chr4_4:2595672-2595691 Msa0663700:CDS 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG + chr4_4:2595710-2595729 Msa0663690:three_prime_UTR 55.0%
CTTGCTTCCTCCGGACCTAA+GGG - chr4_4:2595720-2595739 Msa0663700:CDS 55.0%
GCATCATCGCTTGCTTCCTC+CGG - chr4_4:2595729-2595748 Msa0663700:CDS 55.0%
GCGATGATGCATCCACTGCT+CGG + chr4_4:2595739-2595758 Msa0663690:three_prime_UTR 55.0%
CGGTTCGTCTGGAGGAAATG+AGG - chr4_4:2595781-2595800 Msa0663700:CDS 55.0%
GACTAGTACCTACCCTGGAG+AGG - chr4_4:2595986-2596005 Msa0663700:CDS 55.0%
TGGGCACATGCACCTCTACA+TGG + chr4_4:2596241-2596260 Msa0663690:intron 55.0%
GGGCCTGCATACATAACCCC+AGG - chr4_4:2590274-2590293 None:intergenic 60.0%
GCTGTGTTTCGCCAGTACCC+TGG + chr4_4:2592753-2592772 Msa0663690:CDS 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG - chr4_4:2594922-2594941 Msa0663700:CDS 60.0%
AAGGCGAAGGCGAAGGAAGG+AGG - chr4_4:2594986-2595005 Msa0663700:CDS 60.0%
GCTTGCTTCCTCCGGACCTA+AGG - chr4_4:2595721-2595740 Msa0663700:CDS 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG - chr4_4:2595754-2595773 Msa0663700:CDS 60.0%
GACAATCGCAGCGGCAGCAG+TGG + chr4_4:2594695-2594714 Msa0663690:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 2588683 2596655 2588683 ID=Msa0663690;Name=Msa0663690
chr4_4 mRNA 2588683 2596655 2588683 ID=Msa0663690-mRNA-1;Parent=Msa0663690;Name=Msa0663690-mRNA-1;_AED=0.17;_eAED=0.17;_QI=55|1|1|1|0.78|0.73|15|1984|382
chr4_4 exon 2588683 2589054 2588683 ID=Msa0663690-mRNA-1:exon:746;Parent=Msa0663690-mRNA-1
chr4_4 exon 2590290 2590320 2590290 ID=Msa0663690-mRNA-1:exon:747;Parent=Msa0663690-mRNA-1
chr4_4 exon 2590761 2590853 2590761 ID=Msa0663690-mRNA-1:exon:748;Parent=Msa0663690-mRNA-1
chr4_4 exon 2590970 2591032 2590970 ID=Msa0663690-mRNA-1:exon:749;Parent=Msa0663690-mRNA-1
chr4_4 exon 2591217 2591328 2591217 ID=Msa0663690-mRNA-1:exon:750;Parent=Msa0663690-mRNA-1
chr4_4 exon 2591512 2591597 2591512 ID=Msa0663690-mRNA-1:exon:751;Parent=Msa0663690-mRNA-1
chr4_4 exon 2592338 2592396 2592338 ID=Msa0663690-mRNA-1:exon:752;Parent=Msa0663690-mRNA-1
chr4_4 exon 2592501 2592603 2592501 ID=Msa0663690-mRNA-1:exon:753;Parent=Msa0663690-mRNA-1
chr4_4 exon 2592714 2592774 2592714 ID=Msa0663690-mRNA-1:exon:754;Parent=Msa0663690-mRNA-1
chr4_4 exon 2593451 2593533 2593451 ID=Msa0663690-mRNA-1:exon:755;Parent=Msa0663690-mRNA-1
chr4_4 exon 2593617 2593697 2593617 ID=Msa0663690-mRNA-1:exon:756;Parent=Msa0663690-mRNA-1
chr4_4 exon 2594018 2595466 2594018 ID=Msa0663690-mRNA-1:exon:757;Parent=Msa0663690-mRNA-1
chr4_4 exon 2595583 2595821 2595583 ID=Msa0663690-mRNA-1:exon:758;Parent=Msa0663690-mRNA-1
chr4_4 exon 2595917 2596028 2595917 ID=Msa0663690-mRNA-1:exon:759;Parent=Msa0663690-mRNA-1
chr4_4 exon 2596412 2596655 2596412 ID=Msa0663690-mRNA-1:exon:760;Parent=Msa0663690-mRNA-1
chr4_4 five_prime_UTR 2588683 2588737 2588683 ID=Msa0663690-mRNA-1:five_prime_utr;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2588738 2589054 2588738 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2590290 2590320 2590290 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2590761 2590853 2590761 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2590970 2591032 2590970 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2591217 2591328 2591217 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2591512 2591597 2591512 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2592338 2592396 2592338 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2592501 2592603 2592501 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2592714 2592774 2592714 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2593451 2593533 2593451 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2593617 2593697 2593617 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 CDS 2594018 2594077 2594018 ID=Msa0663690-mRNA-1:cds;Parent=Msa0663690-mRNA-1
chr4_4 three_prime_UTR 2594078 2595466 2594078 ID=Msa0663690-mRNA-1:three_prime_utr;Parent=Msa0663690-mRNA-1
chr4_4 three_prime_UTR 2595583 2595821 2595583 ID=Msa0663690-mRNA-1:three_prime_utr;Parent=Msa0663690-mRNA-1
chr4_4 three_prime_UTR 2595917 2596028 2595917 ID=Msa0663690-mRNA-1:three_prime_utr;Parent=Msa0663690-mRNA-1
chr4_4 three_prime_UTR 2596412 2596655 2596412 ID=Msa0663690-mRNA-1:three_prime_utr;Parent=Msa0663690-mRNA-1
Gene Sequence

>Msa0663690

ATGCTACTATCCATGGCTATGGCTATGTCATCTCTACCTCACAACCTCACTTTTCTTCCTTCACATCTTTCTCCACTATCTTCTTCACCTTCTTCAATTTCTACTACTAAATCTCTTCGAAACACTTCTTTATTCAAAATCAAATGCATTAAAACCGAAAAAGAAGCTTCTTCATCAGAGCCAAATCGTGGTTTCGATCCTAAATCAGGTGTATCTGTTTACAAACCTAAGTCTTATGAAGTTCTCGCTACTGATGCTGCTAATTCACTCAATTTTGCTCTTCAAGATGGAAAACTGAGACTCGAAATCGATTTCCCGCCCTTGCCCAGCAACATTTCTTCATATAAGGGATCTTCAGATGATTTCATCGATGCCAACATTCAACTTGTCTTGGCTGTTGTAAAAAAGCTACAGGAGAAAAAAGAGACCAGAGCTTGCATAGTATTCCCTGATAAACCAGAAAAGCTTCGAGCCTCTCAGTTGTTCAAAGCAGCTCTGGATTCAGTTGATGGCCTTACTATAGGCTCCTTAGATGATATCCCTGCAGGACCTGTGGCTTCATTTTTCAGATCTGTTAGAAACACCCTTGATTTTGACTTTGAAGATGAGAATGAAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCTGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAATTGTTGAGGGTCCTTGGACTTCAAGAAGAGGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGA

Protein sequence

>Msa0663690

MLLSMAMAMSSLPHNLTFLPSHLSPLSSSPSSISTTKSLRNTSLFKIKCIKTEKEASSSEPNRGFDPKSGVSVYKPKSYEVLATDAANSLNFALQDGKLRLEIDFPPLPSNISSYKGSSDDFIDANIQLVLAVVKKLQEKKETRACIVFPDKPEKLRASQLFKAALDSVDGLTIGSLDDIPAGPVASFFRSVRNTLDFDFEDENEGRWQSSEPPSLYIFINSSTRELGYIEKYVEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRSSTWWEEDSDLEVSSAWRT*