AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0165820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165820 MtrunA17_Chr1g0191841 85.970 335 14 6 1 310 1 327 0.0 539
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0165820 AT5G27560.3 56.484 347 108 7 1 310 1 341 1.85e-123 357
Msa0165820 AT5G27560.4 56.484 347 108 7 1 310 1 341 1.85e-123 357
Msa0165820 AT5G27560.1 56.484 347 108 7 1 310 1 341 1.85e-123 357
Msa0165820 AT5G27560.2 55.848 342 108 7 1 305 1 336 2.54e-119 347

Find 94 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1_4:+46623868 None:intergenic
CTCAAACTTGGCGCCAAGTT+TGG 0.262372 1_4:+46626545 None:intergenic
TATGTTGCGCAGATGTTATT+TGG 0.303732 1_4:-46623652 Msa0165820:intron
GAAAATTGAGGATGGGAAAA+TGG 0.319876 1_4:+46626612 None:intergenic
ATGTGATGATTCTTGATTGA+TGG 0.353162 1_4:-46623538 Msa0165820:exon
ACCTCAATATCTTCAGTATC+AGG 0.376552 1_4:+46623829 None:intergenic
ATTACTGCACCTTCCAAGTC+TGG 0.380610 1_4:+46626353 None:intergenic
ACCGCATCATTTGTATCTTC+AGG 0.381954 1_4:-46626314 Msa0165820:CDS
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1_4:+46625551 None:intergenic
TCCACCTCCACCTCCAAACT+TGG 0.392380 1_4:-46626558 Msa0165820:CDS
ATCCACGGCCCTTCTTCGTC+GGG 0.393040 1_4:-46626728 Msa0165820:five_prime_UTR
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1_4:+46626533 None:intergenic
CCCCGACATCTTTGCTATAC+AGG 0.398941 1_4:+46624751 None:intergenic
AACAGACTTTGTCCTTGCTC+TGG 0.399492 1_4:+46623610 None:intergenic
GATATAATGTACGGCAGTTA+AGG 0.401996 1_4:-46624725 Msa0165820:CDS
AGAGTGTTGTTGAGTGGAAC+TGG 0.404963 1_4:+46626649 None:intergenic
GAGGATGATGAAGGAGGTTC+AGG 0.407540 1_4:+46626507 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1_4:-46625538 Msa0165820:CDS
AAGGCGCACAGTTGGAGCTC+TGG 0.422719 1_4:-46626145 Msa0165820:CDS
ATGGGAAAATGGAGTGGGTG+AGG 0.425424 1_4:+46626623 None:intergenic
ATTCTTCCATTGGAAAATTG+AGG 0.430950 1_4:+46626600 None:intergenic
GCGTGGATTCCACATGATAA+GGG 0.432418 1_4:+46624773 None:intergenic
GGCGTGGATTCCACATGATA+AGG 0.432489 1_4:+46624772 None:intergenic
GCCTGTATAGCAAAGATGTC+GGG 0.439653 1_4:-46624752 Msa0165820:CDS
TATCCACGGCCCTTCTTCGT+CGG 0.446482 1_4:-46626729 Msa0165820:five_prime_UTR
TATTCTAACATCTGATGATC+AGG 0.447172 1_4:+46625207 None:intergenic
TTCCACATGATAAGGGGCCT+TGG 0.447832 1_4:+46624780 None:intergenic
TGCAGTAATACAATCAAGTC+AGG 0.453229 1_4:-46626339 Msa0165820:CDS
GATATGTTCCGCTATATAGA+AGG 0.454960 1_4:-46623402 Msa0165820:three_prime_UTR
CAGTTGTTTACCTCCAGACT+TGG 0.469645 1_4:-46626366 Msa0165820:CDS
GCCAAGTTTGGAGGTGGAGG+TGG 0.474503 1_4:+46626557 None:intergenic
GGCGCCAAGTTTGGAGGTGG+AGG 0.475987 1_4:+46626554 None:intergenic
TAGCATACTTTAGAAATGAA+AGG 0.481792 1_4:-46623353 Msa0165820:three_prime_UTR
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1_4:+46626590 None:intergenic
TATTCAAGAAACTAAATGTC+AGG 0.484409 1_4:-46626093 Msa0165820:intron
AAGTTTGGAGGTGGAGGTGG+AGG 0.487859 1_4:+46626560 None:intergenic
TGGGAAAATGGAGTGGGTGA+GGG 0.488701 1_4:+46626624 None:intergenic
TCCATTGGAAAATTGAGGAT+GGG 0.490691 1_4:+46626605 None:intergenic
AAACTTGGCGCCAAGTTTGG+AGG 0.491870 1_4:+46626548 None:intergenic
GTAAAGAGAAAATGAGTTGT+CGG 0.494768 1_4:-46626692 Msa0165820:exon
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1_4:+46626574 None:intergenic
TTCCATTGGAAAATTGAGGA+TGG 0.502142 1_4:+46626604 None:intergenic
CCACGGCCCTTCTTCGTCGG+GGG 0.512881 1_4:-46626726 Msa0165820:five_prime_UTR
TAATACATGCAACATAGTAT+AGG 0.516326 1_4:+46623432 None:intergenic
GTTTCTAGTGAGGATGATGA+AGG 0.517280 1_4:+46626498 None:intergenic
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1_4:+46623837 None:intergenic
AGTATAGGATACAAGCTGTA+AGG 0.531544 1_4:+46623447 None:intergenic
AGACGATGAAGGCGCACAGT+TGG 0.532946 1_4:-46626153 Msa0165820:CDS
CTTGGCGCCAAGTTTGGAGG+TGG 0.536310 1_4:+46626551 None:intergenic
AGGCGCACAGTTGGAGCTCT+GGG 0.537017 1_4:-46626144 Msa0165820:CDS
CGCCTGTATAGCAAAGATGT+CGG 0.538948 1_4:-46624753 Msa0165820:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1_4:-46623830 Msa0165820:intron
AGCACCGGCATCTGGAAATA+CGG 0.545922 1_4:+46625559 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1_4:+46626575 None:intergenic
TGGAGCTCTGGGAATTGTCA+AGG 0.547143 1_4:-46626133 Msa0165820:CDS
CTCGAATTCTTAGACGATGA+AGG 0.553819 1_4:-46626164 Msa0165820:CDS
GATCGAAAGCTTGTAGATAG+TGG 0.557895 1_4:-46625255 Msa0165820:CDS
TATAGCAAAGATGTCGGGGT+TGG 0.560922 1_4:-46624747 Msa0165820:CDS
ATCACATAGACTTCATGAAA+CGG 0.569010 1_4:+46623554 None:intergenic
AAGATAAAGACGAAACCGAC+AGG 0.570019 1_4:-46626464 Msa0165820:intron
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1_4:-46623891 Msa0165820:CDS
TAATGAATAATTATTATCCA+CGG 0.577351 1_4:-46626743 Msa0165820:five_prime_UTR
CACGGCCCTTCTTCGTCGGG+GGG 0.578613 1_4:-46626725 Msa0165820:five_prime_UTR
AGGGAGAGAGTGTTGTTGAG+TGG 0.580484 1_4:+46626643 None:intergenic
TCCACGGCCCTTCTTCGTCG+GGG 0.580662 1_4:-46626727 Msa0165820:five_prime_UTR
GCCAAGTTTGAGAAATTCCA+AGG 0.586495 1_4:-46626534 Msa0165820:CDS
AAGGAGGTTCAGGTTCACCT+TGG 0.587647 1_4:+46626517 None:intergenic
TGTTTACCTCCAGACTTGGA+AGG 0.589318 1_4:-46626362 Msa0165820:CDS
TGTAGATAGTGGTGATGAGA+TGG 0.592499 1_4:-46625244 Msa0165820:CDS
TCGGGGTTGGATATAATGTA+CGG 0.596860 1_4:-46624734 Msa0165820:CDS
AGTCTGTTTGACAAAGCGGC+AGG 0.600065 1_4:-46623595 Msa0165820:CDS
GCATCATTTGTATCTTCAGG+AGG 0.601953 1_4:-46626311 Msa0165820:CDS
TTGAGGATGGGAAAATGGAG+TGG 0.610141 1_4:+46626617 None:intergenic
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1_4:-46625535 Msa0165820:CDS
CGTGGATTCCACATGATAAG+GGG 0.614438 1_4:+46624774 None:intergenic
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1_4:-46625563 Msa0165820:CDS
TGAGGATGGGAAAATGGAGT+GGG 0.615442 1_4:+46626618 None:intergenic
TCGTCTAAGAATTCGAGTTG+AGG 0.622785 1_4:+46626170 None:intergenic
ACTTGTGTCCTTCTATATAG+CGG 0.623101 1_4:+46623394 None:intergenic
ACATCTTTGCTATACAGGCG+TGG 0.625104 1_4:+46624756 None:intergenic
AGATAGTGGTGATGAGATGG+TGG 0.638397 1_4:-46625241 Msa0165820:CDS
TCCTGAAGATACAAATGATG+CGG 0.639331 1_4:+46626313 None:intergenic
ACAAAGTCTGTTTGACAAAG+CGG 0.639727 1_4:-46623599 Msa0165820:CDS
CATCATTTGTATCTTCAGGA+GGG 0.641311 1_4:-46626310 Msa0165820:CDS
TCTAGTGAGGATGATGAAGG+AGG 0.648033 1_4:+46626501 None:intergenic
GAAGAACAGAAACCAGAGCA+AGG 0.653627 1_4:-46623622 Msa0165820:CDS
CCTGTATAGCAAAGATGTCG+GGG 0.661498 1_4:-46624751 Msa0165820:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1_4:+46623833 None:intergenic
AGCCAAGGCCCCTTATCATG+TGG 0.662906 1_4:-46624782 Msa0165820:CDS
TGTAATGATAGTTTCTAGTG+AGG 0.671448 1_4:+46626488 None:intergenic
AAATGAAAGGAAACGTTCCG+TGG 0.678264 1_4:-46623340 Msa0165820:three_prime_UTR
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1_4:-46623896 Msa0165820:CDS
ACTGCACCTTCCAAGTCTGG+AGG 0.699886 1_4:+46626356 None:intergenic
AAGGGTGAGATTTCATACCA+CGG 0.736827 1_4:+46623323 Msa0165810:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATATAAATGACA+AGG - chr1_4:46625110-46625129 Msa0165820:intron 10.0%
!! AAAAAAAATATAAATGACAA+GGG - chr1_4:46625111-46625130 Msa0165820:intron 10.0%
!! TAAATGATTAAGGTTATTAT+AGG + chr1_4:46624236-46624255 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + chr1_4:46624246-46624265 None:intergenic 15.0%
!!! TTTGTTATTTCTTTTCTTTT+CGG - chr1_4:46625542-46625561 Msa0165820:CDS 15.0%
!!! TACATCTTATTTTGAATAAT+TGG - chr1_4:46625697-46625716 Msa0165820:intron 15.0%
!! ATGTATATAATAATCCTTAT+GGG + chr1_4:46625855-46625874 None:intergenic 15.0%
!! TTAAAAAAAAGGAAGAATAA+TGG + chr1_4:46626340-46626359 None:intergenic 15.0%
!!! TGATGTTTCTATTAAAAAAA+AGG + chr1_4:46626351-46626370 None:intergenic 15.0%
!! AGTGAAAGAAAAAGATATAT+TGG + chr1_4:46623805-46623824 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG + chr1_4:46624033-46624052 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG + chr1_4:46624034-46624053 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + chr1_4:46624150-46624169 None:intergenic 20.0%
!!! AATAAAAGTATTTGTTGTCT+TGG + chr1_4:46624186-46624205 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG - chr1_4:46624288-46624307 Msa0165820:intron 20.0%
!! CAATGCAAATTAAAATATAC+TGG + chr1_4:46624725-46624744 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG + chr1_4:46625856-46625875 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG + chr1_4:46626128-46626147 None:intergenic 20.0%
!! TTTATAAGTAATATCTAGCA+AGG + chr1_4:46626280-46626299 None:intergenic 20.0%
! GAAAAAGATATATTGGAAGT+TGG + chr1_4:46623798-46623817 None:intergenic 25.0%
! TTAACAACCATCTTAATTAC+AGG - chr1_4:46623856-46623875 Msa0165820:CDS 25.0%
! TATTCAAGAAACTAAATGTC+AGG - chr1_4:46623970-46623989 Msa0165820:intron 25.0%
! CCCTGATCTTATATTAAAAA+TGG - chr1_4:46624030-46624049 Msa0165820:intron 25.0%
! ACCCTACTGATAAAAAATTA+GGG - chr1_4:46624053-46624072 Msa0165820:intron 25.0%
! TCTCTCTGCAATAAATATAT+AGG - chr1_4:46624277-46624296 Msa0165820:intron 25.0%
! CTCTCTGCAATAAATATATA+GGG - chr1_4:46624278-46624297 Msa0165820:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG - chr1_4:46624279-46624298 Msa0165820:intron 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + chr1_4:46624319-46624338 None:intergenic 25.0%
! TGCAAAAGTGACAATTATAA+AGG - chr1_4:46624375-46624394 Msa0165820:intron 25.0%
! AAGTGACAATTATAAAGGAA+CGG - chr1_4:46624380-46624399 Msa0165820:intron 25.0%
!! ACATAAAGCATTAATCAATG+TGG + chr1_4:46624590-46624609 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG + chr1_4:46624662-46624681 None:intergenic 25.0%
! AACATGCACAATTATTTGTT+TGG - chr1_4:46624769-46624788 Msa0165820:CDS 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG + chr1_4:46625095-46625114 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG - chr1_4:46625353-46625372 Msa0165820:intron 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG + chr1_4:46625396-46625415 None:intergenic 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG + chr1_4:46625406-46625425 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG - chr1_4:46625404-46625423 Msa0165820:intron 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG - chr1_4:46625468-46625487 Msa0165820:intron 25.0%
!! TGTATGATTGTCTGAAATTT+AGG + chr1_4:46625516-46625535 None:intergenic 25.0%
! CTAGCAATATATAAATTCTG+AGG - chr1_4:46625612-46625631 Msa0165820:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG + chr1_4:46625738-46625757 None:intergenic 25.0%
! ATATAATAATCCTTATGGGA+GGG + chr1_4:46625851-46625870 None:intergenic 25.0%
! TATATAATAATCCTTATGGG+AGG + chr1_4:46625852-46625871 None:intergenic 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG + chr1_4:46625987-46626006 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG + chr1_4:46625988-46626007 None:intergenic 25.0%
! AAGTCAAAATCATTTACAGA+CGG + chr1_4:46626064-46626083 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG - chr1_4:46626131-46626150 Msa0165820:CDS 25.0%
! TTTGCAAGCAAATATCTATT+TGG + chr1_4:46626198-46626217 None:intergenic 25.0%
! AACGATGTATACATAGAAAA+TGG + chr1_4:46626304-46626323 None:intergenic 25.0%
! TATGTATACATCGTTATAGT+TGG - chr1_4:46626309-46626328 Msa0165820:CDS 25.0%
! ATGTATACATCGTTATAGTT+GGG - chr1_4:46626310-46626329 Msa0165820:CDS 25.0%
! TAATACATGCAACATAGTAT+AGG + chr1_4:46626634-46626653 None:intergenic 25.0%
!! TAGCATACTTTAGAAATGAA+AGG - chr1_4:46626710-46626729 Msa0165820:five_prime_UTR 25.0%
GTAAAGAGAAAATGAGTTGT+CGG - chr1_4:46623371-46623390 Msa0165820:three_prime_UTR 30.0%
ATTCTTCCATTGGAAAATTG+AGG + chr1_4:46623466-46623485 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG + chr1_4:46623578-46623597 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG + chr1_4:46623842-46623861 None:intergenic 30.0%
GATGGTTGTTAAAAATTGAG+TGG + chr1_4:46623848-46623867 None:intergenic 30.0%
AGTTCAACCTGTAATTAAGA+TGG + chr1_4:46623866-46623885 None:intergenic 30.0%
AAACTAAATGTCAGGTTAGT+GGG - chr1_4:46623978-46623997 Msa0165820:intron 30.0%
GACCCTACTGATAAAAAATT+AGG - chr1_4:46624052-46624071 Msa0165820:intron 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG + chr1_4:46624057-46624076 None:intergenic 30.0%
CCCTACTGATAAAAAATTAG+GGG - chr1_4:46624054-46624073 Msa0165820:intron 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG + chr1_4:46624058-46624077 None:intergenic 30.0%
AGGGGTAATAAGAGATAATT+TGG - chr1_4:46624072-46624091 Msa0165820:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + chr1_4:46624141-46624160 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + chr1_4:46624142-46624161 None:intergenic 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG - chr1_4:46624555-46624574 Msa0165820:intron 30.0%
! TAAAGCATTAATCAATGTGG+TGG + chr1_4:46624587-46624606 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG - chr1_4:46624679-46624698 Msa0165820:intron 30.0%
TATTCTAACATCTGATGATC+AGG + chr1_4:46624859-46624878 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG + chr1_4:46625022-46625041 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG - chr1_4:46625266-46625285 Msa0165820:intron 30.0%
AATGTTAACCAGGTACATAA+TGG - chr1_4:46625478-46625497 Msa0165820:intron 30.0%
AAATGATACCATTATGTACC+TGG + chr1_4:46625489-46625508 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG + chr1_4:46625850-46625869 None:intergenic 30.0%
ATGCAGACTATCTGAAAATT+AGG + chr1_4:46625899-46625918 None:intergenic 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG + chr1_4:46625999-46626018 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG - chr1_4:46626007-46626026 Msa0165820:intron 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG + chr1_4:46626011-46626030 None:intergenic 30.0%
ATCACATAGACTTCATGAAA+CGG + chr1_4:46626512-46626531 None:intergenic 30.0%
ATGTGATGATTCTTGATTGA+TGG - chr1_4:46626525-46626544 Msa0165820:CDS 30.0%
GAAAATTGAGGATGGGAAAA+TGG + chr1_4:46623454-46623473 None:intergenic 35.0%
TCCATTGGAAAATTGAGGAT+GGG + chr1_4:46623461-46623480 None:intergenic 35.0%
TTCCATTGGAAAATTGAGGA+TGG + chr1_4:46623462-46623481 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG + chr1_4:46623533-46623552 None:intergenic 35.0%
GTAGTAGTAGTAATACCTGT+CGG + chr1_4:46623617-46623636 None:intergenic 35.0%
TGCAGTAATACAATCAAGTC+AGG - chr1_4:46623724-46623743 Msa0165820:intron 35.0%
TCCTGAAGATACAAATGATG+CGG + chr1_4:46623753-46623772 None:intergenic 35.0%
CATCATTTGTATCTTCAGGA+GGG - chr1_4:46623753-46623772 Msa0165820:intron 35.0%
TTGGAAGTTGGAACATACAA+TGG + chr1_4:46623786-46623805 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG - chr1_4:46623977-46623996 Msa0165820:intron 35.0%
AACTAAATGTCAGGTTAGTG+GGG - chr1_4:46623979-46623998 Msa0165820:intron 35.0%
TGACAATTATAAAGGAACGG+AGG - chr1_4:46624383-46624402 Msa0165820:intron 35.0%
GACAATTATAAAGGAACGGA+GGG - chr1_4:46624384-46624403 Msa0165820:intron 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG - chr1_4:46624525-46624544 Msa0165820:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG - chr1_4:46624623-46624642 Msa0165820:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG - chr1_4:46624926-46624945 Msa0165820:intron 35.0%
! AATTCCATCAAGTTGTCACA+TGG + chr1_4:46624998-46625017 None:intergenic 35.0%
TATCAAAACACAAGAATGCG+TGG + chr1_4:46625226-46625245 None:intergenic 35.0%
GATATAATGTACGGCAGTTA+AGG - chr1_4:46625338-46625357 Msa0165820:intron 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG + chr1_4:46625391-46625410 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG + chr1_4:46625892-46625911 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG + chr1_4:46625922-46625941 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG + chr1_4:46625952-46625971 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG - chr1_4:46625995-46626014 Msa0165820:intron 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG - chr1_4:46626145-46626164 Msa0165820:CDS 35.0%
CAATATCTTCAGTATCAGGA+CGG + chr1_4:46626233-46626252 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG - chr1_4:46626233-46626252 Msa0165820:intron 35.0%
ACCTCAATATCTTCAGTATC+AGG + chr1_4:46626237-46626256 None:intergenic 35.0%
!! AGCAAATTTGCTAGATCACT+TGG - chr1_4:46626373-46626392 Msa0165820:intron 35.0%
AAATAACATCTGCGCAACAT+AGG + chr1_4:46626412-46626431 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG - chr1_4:46626411-46626430 Msa0165820:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG - chr1_4:46626464-46626483 Msa0165820:intron 35.0%
AGTATAGGATACAAGCTGTA+AGG + chr1_4:46626619-46626638 None:intergenic 35.0%
GATATGTTCCGCTATATAGA+AGG - chr1_4:46626661-46626680 Msa0165820:CDS 35.0%
ACTTGTGTCCTTCTATATAG+CGG + chr1_4:46626672-46626691 None:intergenic 35.0%
! TCCCATCCTCAATTTTCCAA+TGG - chr1_4:46623457-46623476 Msa0165820:three_prime_UTR 40.0%
GCCAAGTTTGAGAAATTCCA+AGG - chr1_4:46623529-46623548 Msa0165820:three_prime_UTR 40.0%
!! GTTTCTAGTGAGGATGATGA+AGG + chr1_4:46623568-46623587 None:intergenic 40.0%
AAGATAAAGACGAAACCGAC+AGG - chr1_4:46623599-46623618 Msa0165820:CDS 40.0%
ACCGCATCATTTGTATCTTC+AGG - chr1_4:46623749-46623768 Msa0165820:intron 40.0%
GCATCATTTGTATCTTCAGG+AGG - chr1_4:46623752-46623771 Msa0165820:intron 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG + chr1_4:46623896-46623915 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG - chr1_4:46623899-46623918 Msa0165820:CDS 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG - chr1_4:46623940-46623959 Msa0165820:intron 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG - chr1_4:46624528-46624547 Msa0165820:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG + chr1_4:46624800-46624819 None:intergenic 40.0%
GATCGAAAGCTTGTAGATAG+TGG - chr1_4:46624808-46624827 Msa0165820:intron 40.0%
! TGTAGATAGTGGTGATGAGA+TGG - chr1_4:46624819-46624838 Msa0165820:intron 40.0%
AACAGAGCTCAGAGATTTAC+TGG + chr1_4:46624916-46624935 None:intergenic 40.0%
TCGGGGTTGGATATAATGTA+CGG - chr1_4:46625329-46625348 Msa0165820:intron 40.0%
! CAAATGCACGTTTGTCGTTT+GGG - chr1_4:46625437-46625456 Msa0165820:intron 40.0%
AATACTGCACCAAATGGCAT+AGG + chr1_4:46625799-46625818 None:intergenic 40.0%
!! TGCCATTTGGTGCAGTATTT+CGG - chr1_4:46625800-46625819 Msa0165820:intron 40.0%
!! TTTCGGTGTTATCCAGAGTA+AGG - chr1_4:46625817-46625836 Msa0165820:intron 40.0%
TTTCAGATAGTCTGCATCCA+TGG - chr1_4:46625902-46625921 Msa0165820:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG - chr1_4:46625932-46625951 Msa0165820:intron 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG + chr1_4:46625977-46625996 None:intergenic 40.0%
CTGTGAAATTCGCACATTGT+TGG - chr1_4:46626037-46626056 Msa0165820:intron 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG - chr1_4:46626167-46626186 Msa0165820:CDS 40.0%
TGTTCAGTGATGACAAGGAT+AGG - chr1_4:46626172-46626191 Msa0165820:CDS 40.0%
AAATGAAAGGAAACGTTCCG+TGG - chr1_4:46626723-46626742 Msa0165820:five_prime_UTR 40.0%
AAGGGTGAGATTTCATACCA+CGG + chr1_4:46626743-46626762 None:intergenic 40.0%
!! AGAGTGTTGTTGAGTGGAAC+TGG + chr1_4:46623417-46623436 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG + chr1_4:46623448-46623467 None:intergenic 45.0%
TTGAGGATGGGAAAATGGAG+TGG + chr1_4:46623449-46623468 None:intergenic 45.0%
GCGAAGGGAAATTCTTCCAT+TGG + chr1_4:46623476-46623495 None:intergenic 45.0%
TCTAGTGAGGATGATGAAGG+AGG + chr1_4:46623565-46623584 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG - chr1_4:46623697-46623716 Msa0165820:intron 45.0%
TGTTTACCTCCAGACTTGGA+AGG - chr1_4:46623701-46623720 Msa0165820:intron 45.0%
ATTACTGCACCTTCCAAGTC+TGG + chr1_4:46623713-46623732 None:intergenic 45.0%
AAAATTGAGTGGAAGCGGCA+TGG + chr1_4:46623837-46623856 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG - chr1_4:46624004-46624023 Msa0165820:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG - chr1_4:46624007-46624026 Msa0165820:intron 45.0%
TCAGGGCCTCCAATTTGATT+GGG + chr1_4:46624016-46624035 None:intergenic 45.0%
ATCAGGGCCTCCAATTTGAT+TGG + chr1_4:46624017-46624036 None:intergenic 45.0%
AAGGAACGGAGGGAGTAATT+TGG - chr1_4:46624394-46624413 Msa0165820:intron 45.0%
AAAGCCGTATTTCCAGATGC+CGG - chr1_4:46624500-46624519 Msa0165820:intron 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG + chr1_4:46624522-46624541 None:intergenic 45.0%
TGGACAGAATTGCATCAGCA+TGG + chr1_4:46624705-46624724 None:intergenic 45.0%
! AGATAGTGGTGATGAGATGG+TGG - chr1_4:46624822-46624841 Msa0165820:intron 45.0%
ACAGCCATGTGACAACTTGA+TGG - chr1_4:46624991-46625010 Msa0165820:intron 45.0%
CGTGGATTCCACATGATAAG+GGG + chr1_4:46625292-46625311 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG + chr1_4:46625293-46625312 None:intergenic 45.0%
! ACATCTTTGCTATACAGGCG+TGG + chr1_4:46625310-46625329 None:intergenic 45.0%
CGCCTGTATAGCAAAGATGT+CGG - chr1_4:46625310-46625329 Msa0165820:intron 45.0%
GCCTGTATAGCAAAGATGTC+GGG - chr1_4:46625311-46625330 Msa0165820:intron 45.0%
CCTGTATAGCAAAGATGTCG+GGG - chr1_4:46625312-46625331 Msa0165820:intron 45.0%
TATAGCAAAGATGTCGGGGT+TGG - chr1_4:46625316-46625335 Msa0165820:intron 45.0%
GCAAATGCACGTTTGTCGTT+TGG - chr1_4:46625436-46625455 Msa0165820:intron 45.0%
CATATGCGACCTATGCCATT+TGG - chr1_4:46625787-46625806 Msa0165820:intron 45.0%
CACCGAAATACTGCACCAAA+TGG + chr1_4:46625805-46625824 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG + chr1_4:46625843-46625862 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG + chr1_4:46625978-46625997 None:intergenic 45.0%
ATCTTCAGTATCAGGACGGT+TGG + chr1_4:46626229-46626248 None:intergenic 45.0%
GAAGAACAGAAACCAGAGCA+AGG - chr1_4:46626441-46626460 Msa0165820:intron 45.0%
AACAGACTTTGTCCTTGCTC+TGG + chr1_4:46626456-46626475 None:intergenic 45.0%
!! AGGGAGAGAGTGTTGTTGAG+TGG + chr1_4:46623423-46623442 None:intergenic 50.0%
TGGGAAAATGGAGTGGGTGA+GGG + chr1_4:46623442-46623461 None:intergenic 50.0%
ATGGGAAAATGGAGTGGGTG+AGG + chr1_4:46623443-46623462 None:intergenic 50.0%
AAACTTGGCGCCAAGTTTGG+AGG + chr1_4:46623518-46623537 None:intergenic 50.0%
CTCAAACTTGGCGCCAAGTT+TGG + chr1_4:46623521-46623540 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG + chr1_4:46623549-46623568 None:intergenic 50.0%
GAGGATGATGAAGGAGGTTC+AGG + chr1_4:46623559-46623578 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG - chr1_4:46623930-46623949 Msa0165820:intron 50.0%
!! AGCACCGGCATCTGGAAATA+CGG + chr1_4:46624507-46624526 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG + chr1_4:46625286-46625305 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG + chr1_4:46625294-46625313 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG + chr1_4:46625315-46625334 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG - chr1_4:46625441-46625460 Msa0165820:intron 50.0%
AGGGGAAAAAGGCCTTACTC+TGG + chr1_4:46625832-46625851 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG - chr1_4:46626468-46626487 Msa0165820:CDS 50.0%
TATCCACGGCCCTTCTTCGT+CGG - chr1_4:46623334-46623353 Msa0165820:three_prime_UTR 55.0%
TCTTACCCCCCGACGAAGAA+GGG + chr1_4:46623346-46623365 None:intergenic 55.0%
TTCTTACCCCCCGACGAAGA+AGG + chr1_4:46623347-46623366 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG + chr1_4:46623491-46623510 None:intergenic 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG + chr1_4:46623492-46623511 None:intergenic 55.0%
AAGTTTGGAGGTGGAGGTGG+AGG + chr1_4:46623506-46623525 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG - chr1_4:46623505-46623524 Msa0165820:three_prime_UTR 55.0%
ACTGCACCTTCCAAGTCTGG+AGG + chr1_4:46623710-46623729 None:intergenic 55.0%
TTGAGTGGAAGCGGCATGGA+AGG + chr1_4:46623833-46623852 None:intergenic 55.0%
! AGACGATGAAGGCGCACAGT+TGG - chr1_4:46623910-46623929 Msa0165820:intron 55.0%
AGCCAAGGCCCCTTATCATG+TGG - chr1_4:46625281-46625300 Msa0165820:intron 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG - chr1_4:46625838-46625857 Msa0165820:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG - chr1_4:46626482-46626501 Msa0165820:CDS 55.0%
ATCCACGGCCCTTCTTCGTC+GGG - chr1_4:46623335-46623354 Msa0165820:three_prime_UTR 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG + chr1_4:46623509-46623528 None:intergenic 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG + chr1_4:46623515-46623534 None:intergenic 60.0%
AAGGCGCACAGTTGGAGCTC+TGG - chr1_4:46623918-46623937 Msa0165820:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG - chr1_4:46623919-46623938 Msa0165820:intron 60.0%
TCCACGGCCCTTCTTCGTCG+GGG - chr1_4:46623336-46623355 Msa0165820:three_prime_UTR 65.0%
GGCGCCAAGTTTGGAGGTGG+AGG + chr1_4:46623512-46623531 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG + chr1_4:46624515-46624534 None:intergenic 65.0%
CCACGGCCCTTCTTCGTCGG+GGG - chr1_4:46623337-46623356 Msa0165820:three_prime_UTR 70.0%
CACGGCCCTTCTTCGTCGGG+GGG - chr1_4:46623338-46623357 Msa0165820:three_prime_UTR 70.0%
CCCCCGACGAAGAAGGGCCG+TGG + chr1_4:46623340-46623359 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 46623321 46626764 46623321 ID=Msa0165820;Name=Msa0165820
chr1_4 mRNA 46623321 46626764 46623321 ID=Msa0165820-mRNA-1;Parent=Msa0165820;Name=Msa0165820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=61|0.85|1|1|1|1|8|234|310
chr1_4 exon 46623321 46623662 46623321 ID=Msa0165820-mRNA-1:exon:13458;Parent=Msa0165820-mRNA-1
chr1_4 exon 46623831 46623924 46623831 ID=Msa0165820-mRNA-1:exon:13457;Parent=Msa0165820-mRNA-1
chr1_4 exon 46624711 46624802 46624711 ID=Msa0165820-mRNA-1:exon:13456;Parent=Msa0165820-mRNA-1
chr1_4 exon 46625170 46625284 46625170 ID=Msa0165820-mRNA-1:exon:13455;Parent=Msa0165820-mRNA-1
chr1_4 exon 46625509 46625591 46625509 ID=Msa0165820-mRNA-1:exon:13454;Parent=Msa0165820-mRNA-1
chr1_4 exon 46626094 46626207 46626094 ID=Msa0165820-mRNA-1:exon:13453;Parent=Msa0165820-mRNA-1
chr1_4 exon 46626298 46626385 46626298 ID=Msa0165820-mRNA-1:exon:13452;Parent=Msa0165820-mRNA-1
chr1_4 exon 46626465 46626764 46626465 ID=Msa0165820-mRNA-1:exon:13451;Parent=Msa0165820-mRNA-1
chr1_4 five_prime_UTR 46626704 46626764 46626704 ID=Msa0165820-mRNA-1:five_prime_utr;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46626465 46626703 46626465 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46626298 46626385 46626298 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46626094 46626207 46626094 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46625509 46625591 46625509 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46625170 46625284 46625170 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46624711 46624802 46624711 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46623831 46623924 46623831 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 CDS 46623555 46623662 46623555 ID=Msa0165820-mRNA-1:cds;Parent=Msa0165820-mRNA-1
chr1_4 three_prime_UTR 46623321 46623554 46623321 ID=Msa0165820-mRNA-1:three_prime_utr;Parent=Msa0165820-mRNA-1
Gene Sequence

>Msa0165820

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATCCAGTTCCACTCAACAACACTCTCTCCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCATCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTTGTATCTTCAGGAGGGATGAGAGCCATTGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGCTTAAGTGATCGAAAGCTTGTAGATAGTGGTGATGAGATGGTGGTTATGATTGTTCCTGATCATCAGATGTTAGAATATGTAGAGAAAATTGCATCTACTCTCTCTGATGATCCACCAAGGCCCCTTATCATGTGGAATCCACGCCTGTATAGCAAAGATGTCGGGGTTGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>Msa0165820

MSCRSLTCCNIQFHSTTLSPSPTPFSHPQFSNGRISLRSSTSTSTSKLGAKFEKFQGEPEPPSSSSLETIITQDKDETDSCLPPDLEGAVIQSSQATASFVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQKVKAVFPDAGAAALLKYRWKDALFSFASLSDRKLVDSGDEMVVMIVPDHQMLEYVEKIASTLSDDPPRPLIMWNPRLYSKDVGVGYNVRQLRQYFLRLWKVFSDDKDRPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM*