AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0634900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634900 MtrunA17_Chr4g0014341 87.705 366 10 3 1 366 1 331 0.0 620
Msa0634900 MtrunA17_Chr4g0065691 32.227 211 135 3 120 326 20 226 6.66e-22 94.0
Msa0634900 MtrunA17_Chr2g0287701 35.468 203 121 4 129 326 29 226 1.74e-19 87.4
Msa0634900 MtrunA17_Chr2g0291431 33.333 135 84 3 151 281 106 238 2.10e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0634900 AT1G22850.1 72.368 304 62 4 30 323 36 327 2.02e-134 387
Msa0634900 AT1G22850.2 71.533 274 56 4 30 293 36 297 1.91e-126 365
Msa0634900 AT1G03260.1 37.423 163 101 1 120 281 22 184 1.30e-23 99.4
Msa0634900 AT5G19070.1 39.873 158 92 3 126 281 26 182 1.54e-17 82.4
Msa0634900 AT5G19070.2 39.873 158 92 3 126 281 26 182 5.23e-17 79.7
Msa0634900 AT1G12450.1 26.855 283 179 9 75 336 19 294 1.82e-13 70.9
Msa0634900 AT4G22850.1 29.577 213 138 5 122 325 72 281 1.63e-12 67.8

Find 137 sgRNAs with CRISPR-Local

Find 581 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACACTGTTTCAATTTA+AGG 0.096298 4_3:+22720672 None:intergenic
CATCTCCATCCAAAACTTTA+AGG 0.164212 4_3:+22720576 None:intergenic
GGTTACATTTGTTCCAATTT+AGG 0.166553 4_3:+22720256 None:intergenic
TGATAATCGATTATTATTAT+TGG 0.175526 4_3:+22728318 None:intergenic
TCTTTGGGGAATTATTTATA+TGG 0.194134 4_3:-22725213 Msa0634900:CDS
GACAAAGCAATTGGAGAAAA+TGG 0.205274 4_3:-22725282 Msa0634900:CDS
GTATGTTTATATGCCTAAAT+TGG 0.210185 4_3:-22720269 Msa0634900:three_prime_UTR
CTTATTGATGAGAATCTTGT+AGG 0.268397 4_3:-22720721 Msa0634900:three_prime_UTR
TTGCCAATACCTTAAAGTTT+TGG 0.269774 4_3:-22720585 Msa0634900:three_prime_UTR
TTTCCCCTTGCGGTTGGATT+TGG 0.275984 4_3:-22721267 Msa0634900:CDS
GTCAGTGTTATTGATTCTAC+TGG 0.284826 4_3:+22728222 None:intergenic
CGGTTGCCTCTAGTCTCTAC+TGG 0.298470 4_3:+22720882 None:intergenic
TATGTTAGTGCTGGTGCTTT+TGG 0.309524 4_3:-22724615 Msa0634900:CDS
CATCCAAAACTTTAAGGTAT+TGG 0.315273 4_3:+22720582 None:intergenic
CCAACACTGTTTCAATTTAA+GGG 0.324582 4_3:+22720673 None:intergenic
CAATGGGAATCAATAAATCT+AGG 0.327035 4_3:-22720416 Msa0634900:three_prime_UTR
AAATAATTCCCCAAAGAAAA+TGG 0.331770 4_3:+22725219 None:intergenic
GACGCTTGGGCTGGGACTCT+TGG 0.334788 4_3:-22721768 Msa0634900:CDS
TGCTTTGAAGGGTACCCTTT+TGG 0.335561 4_3:-22728077 Msa0634900:CDS
TGATTCAAGAAAGTATTAAT+AGG 0.339145 4_3:+22727992 None:intergenic
CTTGCTATTGACAAAGCAAT+TGG 0.371123 4_3:-22725291 Msa0634900:CDS
ATTTGGATTTCCTGCATTGT+TGG 0.371622 4_3:-22721250 Msa0634900:CDS
CTAACATAAGCCCATGTTCC+TGG 0.376453 4_3:+22724630 None:intergenic
GTAAAGTTTATAATTAATCT+TGG 0.377883 4_3:+22720235 None:intergenic
TAATTGTCATGCAGTTGGTT+GGG 0.378900 4_3:-22724660 Msa0634900:intron
GGCAGGTCTATGATCGGATT+GGG 0.382799 4_3:-22720840 Msa0634900:three_prime_UTR
CTTTGGGGAATTATTTATAT+GGG 0.384365 4_3:-22725212 Msa0634900:CDS
ATCTGAGAAAGAGGAGGAAG+AGG 0.384823 4_3:-22728110 Msa0634900:CDS
TCAGCTGCTGACGCTTGGGC+TGG 0.387503 4_3:-22721777 Msa0634900:CDS
CAGCTGCTGACGCTTGGGCT+GGG 0.387875 4_3:-22721776 Msa0634900:CDS
AGTTGGTTGGGGATGCTTCC+AGG 0.390286 4_3:-22724648 Msa0634900:CDS
TAAGTTTCTTCCGTATGTAC+TGG 0.393619 4_3:-22725178 Msa0634900:CDS
AACAATCAGCTGCTGACGCT+TGG 0.399885 4_3:-22721782 Msa0634900:CDS
CAATTCTCTGGCTTCATTGA+AGG 0.403169 4_3:-22727971 Msa0634900:intron
TCCAACCGCAAGGGGAAACT+TGG 0.407447 4_3:+22721272 None:intergenic
TGGGGATGCTTCCAGGAACA+TGG 0.413941 4_3:-22724641 Msa0634900:CDS
AGCTCAAAGTTATATAATCT+TGG 0.418021 4_3:+22720213 None:intergenic
TGAGCGTATTCTAAAATTAG+TGG 0.427699 4_3:-22725331 Msa0634900:CDS
AAGAAAGAAGGTGGAATGAA+TGG 0.434244 4_3:+22728441 None:intergenic
CAAGCAAAACACCAGCCAAA+AGG 0.436537 4_3:+22728062 None:intergenic
AAGTCCGGCTGACATGGTTA+AGG 0.437784 4_3:+22726103 None:intergenic
ACTTTCTTGAATCAATTCTC+TGG 0.437926 4_3:-22727983 Msa0634900:CDS
ACAATCAGCTGCTGACGCTT+GGG 0.440714 4_3:-22721781 Msa0634900:CDS
TTGATTCCCATTGTTGTGGA+TGG 0.444183 4_3:+22720426 None:intergenic
AACTAGTGCAAATGGAATCT+AGG 0.446140 4_3:+22720516 None:intergenic
AAGAGGTGAATCTGAGAAAG+AGG 0.449056 4_3:-22728119 Msa0634900:CDS
TGTTAAAGAACTAGTGCAAA+TGG 0.451818 4_3:+22720508 None:intergenic
CCCTTAAATTGAAACAGTGT+TGG 0.454234 4_3:-22720673 Msa0634900:three_prime_UTR
AACCTATGTCAGGACTATAA+AGG 0.454874 4_3:+22721310 None:intergenic
AAGAATAAGAAGAAGAAAAG+AGG 0.456198 4_3:-22728136 Msa0634900:CDS
TTGTTTGTAGCTGTTTATGC+TGG 0.458819 4_3:-22726350 Msa0634900:CDS
CGACACACATTTGCGAATGA+AGG 0.468877 4_3:-22720861 Msa0634900:three_prime_UTR
CCCAAAGAAAATGGCAGCAA+AGG 0.469203 4_3:+22725228 None:intergenic
AGACTATGATGGTGCCGGTA+AGG 0.470757 4_3:+22726069 None:intergenic
GCAAAGGGCTCAAACGAAGC+AGG 0.470966 4_3:+22725244 None:intergenic
AATTGGAGAAAATGGCTTCA+AGG 0.475664 4_3:-22725274 Msa0634900:CDS
AGTCCGGCTGACATGGTTAA+GGG 0.477591 4_3:+22726104 None:intergenic
TGTAGCTGTTTATGCTGGAT+TGG 0.479159 4_3:-22726345 Msa0634900:CDS
GACTATGATGGTGCCGGTAA+GGG 0.479298 4_3:+22726070 None:intergenic
GATGTGGTGTCTTAATCTCT+TGG 0.481882 4_3:-22720557 Msa0634900:three_prime_UTR
AAAGAGGAGGAAGAGGATGA+TGG 0.482567 4_3:-22728103 Msa0634900:CDS
TGAGAGAGAATCAAGGAAAG+TGG 0.483444 4_3:-22720778 Msa0634900:three_prime_UTR
ACTTACCCATCCACAACAAT+GGG 0.485719 4_3:-22720432 Msa0634900:three_prime_UTR
GCCAAGTTTCCCCTTGCGGT+TGG 0.486313 4_3:-22721273 Msa0634900:CDS
GGATGATGGTGCTGCTTTGA+AGG 0.486489 4_3:-22728089 Msa0634900:CDS
TGAGCAGGTTATGGTTCAGC+TGG 0.486738 4_3:-22726380 Msa0634900:intron
GAATCTGAACTTAGTTCACT+TGG 0.487591 4_3:-22721809 Msa0634900:CDS
CCCAGGTATGAACCTATGTC+AGG 0.504124 4_3:+22721300 None:intergenic
TAAGAATATTGTAATTTACA+AGG 0.505788 4_3:+22720740 None:intergenic
AAGCAAAACACCAGCCAAAA+GGG 0.506033 4_3:+22728063 None:intergenic
ATAATTGTCATGCAGTTGGT+TGG 0.507926 4_3:-22724661 Msa0634900:intron
AGGCAGGTCTATGATCGGAT+TGG 0.509003 4_3:-22720841 Msa0634900:three_prime_UTR
AGCTGTTTATGCTGGATTGG+AGG 0.512844 4_3:-22726342 Msa0634900:intron
CAAGGCCAAGTTTCCCCTTG+CGG 0.515010 4_3:-22721277 Msa0634900:CDS
CCAAAGAAAATGGCAGCAAA+GGG 0.517038 4_3:+22725229 None:intergenic
GACATGGTTAAGGGAATGGC+AGG 0.519492 4_3:+22726113 None:intergenic
GGGGATGCTTCCAGGAACAT+GGG 0.521976 4_3:-22724640 Msa0634900:CDS
TAATTTACAAGGGGAATGCT+AGG 0.529214 4_3:+22720751 None:intergenic
CGTATTCTAAAATTAGTGGA+AGG 0.529552 4_3:-22725327 Msa0634900:CDS
TACTTACCCATCCACAACAA+TGG 0.530494 4_3:-22720433 Msa0634900:three_prime_UTR
AATTGTCATGCAGTTGGTTG+GGG 0.530827 4_3:-22724659 Msa0634900:intron
TGCGAGTGGTGGTTAGAAGT+TGG 0.534571 4_3:-22720642 Msa0634900:three_prime_UTR
ATTTAAGGGAGCAACACAAA+AGG 0.535042 4_3:+22720687 None:intergenic
TTTATTGATTCCCATTGTTG+TGG 0.536217 4_3:+22720422 None:intergenic
AGAATCAGTTACAAGAAAGA+AGG 0.536879 4_3:+22728429 None:intergenic
AATGGGAATCAATAAATCTA+GGG 0.538341 4_3:-22720415 Msa0634900:three_prime_UTR
GGCTGACATGGTTAAGGGAA+TGG 0.542883 4_3:+22726109 None:intergenic
AAGTTTCTTCCGTATGTACT+GGG 0.545043 4_3:-22725177 Msa0634900:CDS
TGATAGATGAGAGAGAATCA+AGG 0.545672 4_3:-22720785 Msa0634900:three_prime_UTR
AAGAATATTGTAATTTACAA+GGG 0.546641 4_3:+22720741 None:intergenic
TCTGAACTTAGTTCACTTGG+AGG 0.551989 4_3:-22721806 Msa0634900:CDS
CGCCTTTATAGTCCTGACAT+AGG 0.552256 4_3:-22721312 Msa0634900:CDS
GGGGAAACTTGGCCTTGCCC+AGG 0.553380 4_3:+22721283 None:intergenic
TGATTCCCATTGTTGTGGAT+GGG 0.555740 4_3:+22720427 None:intergenic
CCATACCTTCCCAGTACATA+CGG 0.559758 4_3:+22725168 None:intergenic
TCCTGACATAGGTTCATACC+TGG 0.565603 4_3:-22721301 Msa0634900:CDS
TTCTTCCGTATGTACTGGGA+AGG 0.568097 4_3:-22725173 Msa0634900:intron
TCAATAACACTGACCCATCT+CGG 0.572891 4_3:-22728213 Msa0634900:CDS
GGTTGCCTCTAGTCTCTACT+GGG 0.577739 4_3:+22720883 None:intergenic
ATCAGTTACAAGAAAGAAGG+TGG 0.579942 4_3:+22728432 None:intergenic
TCAGTGTTATTGATTCTACT+GGG 0.580565 4_3:+22728223 None:intergenic
GTTTGTTTGAGTGATGAATG+TGG 0.581191 4_3:+22728256 None:intergenic
AGGTGAATCTGAGAAAGAGG+AGG 0.582938 4_3:-22728116 Msa0634900:CDS
ACATGGGCTTATGTTAGTGC+TGG 0.583860 4_3:-22724624 Msa0634900:CDS
AGAATATTGTAATTTACAAG+GGG 0.585844 4_3:+22720742 None:intergenic
GAAGATGATAGACATGGTGG+TGG 0.585967 4_3:+22728358 None:intergenic
ATACTGACAGCCAACAATGC+AGG 0.586212 4_3:+22721240 None:intergenic
ACACATTTGCGAATGAAGGC+AGG 0.594450 4_3:-22720857 Msa0634900:three_prime_UTR
GATAGAGACTATGATGGTGC+CGG 0.594918 4_3:+22726064 None:intergenic
GAAATCCAAATCCAACCGCA+AGG 0.596369 4_3:+22721262 None:intergenic
AAATCCAAATCCAACCGCAA+GGG 0.601426 4_3:+22721263 None:intergenic
GTGGTGTCTTAATCTCTTGG+TGG 0.601445 4_3:-22720554 Msa0634900:three_prime_UTR
ATTCCCTTAACCATGTCAGC+CGG 0.606649 4_3:-22726107 Msa0634900:CDS
AATCCAAATCCAACCGCAAG+GGG 0.611301 4_3:+22721264 None:intergenic
TAGTTCTTTAACATGGTCAG+AGG 0.615298 4_3:-22720498 Msa0634900:three_prime_UTR
AGGGAATGGCAGGAATTGCA+AGG 0.618635 4_3:+22726123 None:intergenic
CTTCATTCGCAAATGTGTGT+CGG 0.619862 4_3:+22720862 None:intergenic
GATGATGGTGCTGCTTTGAA+GGG 0.625806 4_3:-22728088 Msa0634900:CDS
CAAAGGGCTCAAACGAAGCA+GGG 0.626668 4_3:+22725245 None:intergenic
TTTGCACTAGTTCTTTAACA+TGG 0.627899 4_3:-22720505 Msa0634900:three_prime_UTR
TGTGGATGGGTAAGTACAAG+AGG 0.629249 4_3:+22720440 None:intergenic
AATGAAGGCAGGTCTATGAT+CGG 0.629372 4_3:-22720846 Msa0634900:three_prime_UTR
AGTTCTTTAACATGGTCAGA+GGG 0.629717 4_3:-22720497 Msa0634900:three_prime_UTR
ATATGTCACAAAGCTTGCAA+AGG 0.632352 4_3:-22721726 Msa0634900:intron
CATAGGTTCATACCTGGGCA+AGG 0.639300 4_3:-22721295 Msa0634900:CDS
GTATTCTAAAATTAGTGGAA+GGG 0.647848 4_3:-22725326 Msa0634900:CDS
GCAGGTCTATGATCGGATTG+GGG 0.650277 4_3:-22720839 Msa0634900:three_prime_UTR
TCCACTGATAGAGACTATGA+TGG 0.660814 4_3:+22726058 None:intergenic
ACCATCATAGTCTCTATCAG+TGG 0.667003 4_3:-22726059 Msa0634900:CDS
CCTGACATAGGTTCATACCT+GGG 0.670798 4_3:-22721300 Msa0634900:CDS
AATCTAGGAACTAATAACAA+CGG 0.675492 4_3:+22720531 None:intergenic
CTAGACCCAGTAGAGACTAG+AGG 0.675993 4_3:-22720888 Msa0634900:exon
ATATGTAGCAGCTAATGCAG+TGG 0.688625 4_3:+22721745 None:intergenic
TATGAAGAAGATGATAGACA+TGG 0.704292 4_3:+22728352 None:intergenic
GAAGAAGATGATAGACATGG+TGG 0.711512 4_3:+22728355 None:intergenic
TGTTGGAACTCAAGTGCGAG+TGG 0.712136 4_3:-22720656 Msa0634900:three_prime_UTR
TGGAACTCAAGTGCGAGTGG+TGG 0.716561 4_3:-22720653 Msa0634900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTATTTTTAA+AGG - chr4_3:22722832-22722851 Msa0634900:intron 0.0%
!!! TTATTTTTTATTTTTAAATT+GGG + chr4_3:22726718-22726737 None:intergenic 0.0%
!!! ATTATTTTTTATTTTTAAAT+TGG + chr4_3:22726719-22726738 None:intergenic 0.0%
!!! TAAAAATAAAAAATAATTTT+TGG - chr4_3:22726722-22726741 Msa0634900:intron 0.0%
!! TATTTGTAATATTCAATAAT+TGG - chr4_3:22727073-22727092 Msa0634900:intron 10.0%
!! TGATAATCGATTATTATTAT+TGG + chr4_3:22720420-22720439 None:intergenic 15.0%
!!! CTTATTTTCATAAACTTTTT+AGG - chr4_3:22721657-22721676 Msa0634900:intron 15.0%
!! TGATCTCTTATTATATAAAT+AGG - chr4_3:22721720-22721739 Msa0634900:intron 15.0%
!! GAACAATAAAAAATATTTGA+AGG + chr4_3:22722742-22722761 None:intergenic 15.0%
!!! TATTTAAGACATCTAAAATT+TGG - chr4_3:22722909-22722928 Msa0634900:intron 15.0%
!!! ATAATATTTTAAGTCTTTGT+AGG - chr4_3:22723338-22723357 Msa0634900:intron 15.0%
!! TAAAAAAAATTATATTTCCC+AGG - chr4_3:22723729-22723748 Msa0634900:intron 15.0%
!! ATTCGAAGTTAAAAATAAAT+TGG + chr4_3:22724015-22724034 None:intergenic 15.0%
!!! AATTTATTTTTAACTTCGAA+TGG - chr4_3:22724014-22724033 Msa0634900:intron 15.0%
!!! TAAAAAGAAATTCTTTTATG+AGG - chr4_3:22726486-22726505 Msa0634900:intron 15.0%
!!! AAAAAGAAATTCTTTTATGA+GGG - chr4_3:22726487-22726506 Msa0634900:intron 15.0%
!! TAAATACATGTTCTTTAATT+AGG + chr4_3:22727055-22727074 None:intergenic 15.0%
!! GAAGAAATTAAGAAAAATTA+AGG + chr4_3:22727355-22727374 None:intergenic 15.0%
!! TTAATGTTGAAATTTATTGT+TGG - chr4_3:22727706-22727725 Msa0634900:intron 15.0%
!! AAGAATATTGTAATTTACAA+GGG + chr4_3:22727997-22728016 None:intergenic 15.0%
!! TAAGAATATTGTAATTTACA+AGG + chr4_3:22727998-22728017 None:intergenic 15.0%
!! GTAAAGTTTATAATTAATCT+TGG + chr4_3:22728503-22728522 None:intergenic 15.0%
!!! TCATTATCATTTTCACTTTT+GGG + chr4_3:22720566-22720585 None:intergenic 20.0%
!!! ATCATTATCATTTTCACTTT+TGG + chr4_3:22720567-22720586 None:intergenic 20.0%
!!! TGATTCAAGAAAGTATTAAT+AGG + chr4_3:22720746-22720765 None:intergenic 20.0%
!! ATTTATAAGATAAACGCTTA+TGG - chr4_3:22720936-22720955 Msa0634900:intron 20.0%
!! TAGAAATAGCTTATAGATAA+TGG + chr4_3:22720968-22720987 None:intergenic 20.0%
!!! TAAAAAAGTTGGTAGAAAAT+AGG - chr4_3:22721366-22721385 Msa0634900:intron 20.0%
!! TTACATGAATGCATATATAA+AGG - chr4_3:22721879-22721898 Msa0634900:intron 20.0%
!! TACATGAATGCATATATAAA+GGG - chr4_3:22721880-22721899 Msa0634900:intron 20.0%
!!! TCTGATTTTTTTTAGAATCA+CGG - chr4_3:22721908-22721927 Msa0634900:intron 20.0%
!! TAAATAAACCAAAGTTAGTT+TGG + chr4_3:22722578-22722597 None:intergenic 20.0%
!!! TATATGAATTTTGCATATTC+TGG + chr4_3:22722769-22722788 None:intergenic 20.0%
!! AACAAGTATTTATAAGTGAT+TGG - chr4_3:22722944-22722963 Msa0634900:intron 20.0%
!!! AATAAGTTGAAAACAGTTTA+TGG - chr4_3:22723152-22723171 Msa0634900:intron 20.0%
!! AAACAATTTCAAGATTCAAA+AGG + chr4_3:22723636-22723655 None:intergenic 20.0%
!! AAATTACATTACTTGGAAAT+TGG - chr4_3:22723665-22723684 Msa0634900:intron 20.0%
!! CAGTAATATTTACAAAGAAA+CGG + chr4_3:22724362-22724381 None:intergenic 20.0%
!! ACCATCTTAAAATTTGAATT+GGG + chr4_3:22724738-22724757 None:intergenic 20.0%
!! TACCATCTTAAAATTTGAAT+TGG + chr4_3:22724739-22724758 None:intergenic 20.0%
!!! ATCTACTATGTAATTCTTTT+GGG + chr4_3:22724940-22724959 None:intergenic 20.0%
!!! AATCTACTATGTAATTCTTT+TGG + chr4_3:22724941-22724960 None:intergenic 20.0%
!! CATTTAGTAAATTTCAAAGT+TGG - chr4_3:22725799-22725818 Msa0634900:intron 20.0%
!!! TTTTATTTTTAAATTGGGGA+AGG + chr4_3:22726713-22726732 None:intergenic 20.0%
!! ACATTATCTAATCAACTAAT+TGG + chr4_3:22727180-22727199 None:intergenic 20.0%
!! AGAATATTGTAATTTACAAG+GGG + chr4_3:22727996-22728015 None:intergenic 20.0%
! AAGAATAAGAAGAAGAAAAG+AGG - chr4_3:22720599-22720618 Msa0634900:three_prime_UTR 25.0%
!! AAATTTCTGAAAACAGCTTA+TGG - chr4_3:22721046-22721065 Msa0634900:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr4_3:22721508-22721527 Msa0634900:intron 25.0%
! AATAAGCTAAAAACAGCTTA+TGG + chr4_3:22721643-22721662 None:intergenic 25.0%
! ATCACTTAAAAGTCTAATGT+GGG - chr4_3:22722017-22722036 Msa0634900:intron 25.0%
!! ATTTTCTCTATCCATTCTTT+TGG - chr4_3:22722332-22722351 Msa0634900:intron 25.0%
! ACAACTAATGTAACATTTGA+AGG - chr4_3:22722494-22722513 Msa0634900:intron 25.0%
! TAGATGTCTTAAATATTGAC+AGG + chr4_3:22722904-22722923 None:intergenic 25.0%
!!! ATATTTTAAGTCTTTGTAGG+TGG - chr4_3:22723341-22723360 Msa0634900:intron 25.0%
!!! GTATTCTAAAATTAGTGGAA+GGG - chr4_3:22723409-22723428 Msa0634900:intron 25.0%
! AAATAATTCCCCAAAGAAAA+TGG + chr4_3:22723519-22723538 None:intergenic 25.0%
!! TCTTTGGGGAATTATTTATA+TGG - chr4_3:22723522-22723541 Msa0634900:intron 25.0%
!! CTTTGGGGAATTATTTATAT+GGG - chr4_3:22723523-22723542 Msa0634900:intron 25.0%
! TGAATCTTGAAATTGTTTCA+AGG - chr4_3:22723638-22723657 Msa0634900:intron 25.0%
!! TTTTTACCAAATACATGAGT+AGG + chr4_3:22723715-22723734 None:intergenic 25.0%
!!! CAAATTTTGAAAACATTCCT+GGG + chr4_3:22723749-22723768 None:intergenic 25.0%
!!! TTTTCAAAATTTGGTAATCG+AGG - chr4_3:22723756-22723775 Msa0634900:intron 25.0%
! AATAAAAAAAGGCGAAACTT+TGG + chr4_3:22723821-22723840 None:intergenic 25.0%
!!! GCCTTTTTTTATTACAAAGA+AGG - chr4_3:22723828-22723847 Msa0634900:intron 25.0%
! GCCTTCTTTGTAATAAAAAA+AGG + chr4_3:22723832-22723851 None:intergenic 25.0%
!! ATTAGTTTCTATCAAACACA+TGG - chr4_3:22724523-22724542 Msa0634900:intron 25.0%
!! ACTAAAATCAACGTTTTATC+TGG + chr4_3:22724580-22724599 None:intergenic 25.0%
! TATATAATGCATGTCTATGT+TGG - chr4_3:22724602-22724621 Msa0634900:CDS 25.0%
!! ATTGAAATTGTGTTGATAAG+CGG - chr4_3:22724674-22724693 Msa0634900:intron 25.0%
! AGCTGAAAATGATTTATAAG+TGG - chr4_3:22724863-22724882 Msa0634900:intron 25.0%
! TGAAAATGATTTATAAGTGG+TGG - chr4_3:22724866-22724885 Msa0634900:intron 25.0%
! GAAAATGATTTATAAGTGGT+GGG - chr4_3:22724867-22724886 Msa0634900:intron 25.0%
! ATAGTAGATTGATGAGTTTA+TGG - chr4_3:22724951-22724970 Msa0634900:intron 25.0%
! TAATTTGACCAAGAATTGTT+TGG - chr4_3:22725095-22725114 Msa0634900:intron 25.0%
!!! ATATAGATGACTGTTTTTTG+TGG - chr4_3:22725228-22725247 Msa0634900:CDS 25.0%
!!! ATGCGTTAGTTTTTAGTAAT+TGG - chr4_3:22725332-22725351 Msa0634900:CDS 25.0%
!!! ATAGTCAAATCCTTTTTAAG+AGG - chr4_3:22725609-22725628 Msa0634900:intron 25.0%
!!! AATGAGGATTTCTAAAATTC+TGG - chr4_3:22725824-22725843 Msa0634900:intron 25.0%
! TTGGATATGCATTAAAAACT+GGG + chr4_3:22725984-22726003 None:intergenic 25.0%
! TTTGGATATGCATTAAAAAC+TGG + chr4_3:22725985-22726004 None:intergenic 25.0%
! AATAAAACATTCTAAACCTG+GGG + chr4_3:22726322-22726341 None:intergenic 25.0%
! CAATAAAACATTCTAAACCT+GGG + chr4_3:22726323-22726342 None:intergenic 25.0%
! ACAATAAAACATTCTAAACC+TGG + chr4_3:22726324-22726343 None:intergenic 25.0%
! ATATCATAGAATTCTGTTAC+AGG - chr4_3:22726448-22726467 Msa0634900:intron 25.0%
! TTAATTAGGATATGGAAAAC+AGG + chr4_3:22727041-22727060 None:intergenic 25.0%
! CATGTTCTTTAATTAGGATA+TGG + chr4_3:22727049-22727068 None:intergenic 25.0%
! TAGATAATGTTTCTTTGTCT+TGG - chr4_3:22727190-22727209 Msa0634900:intron 25.0%
!!! AGAACATTGATTCATAGAAT+TGG - chr4_3:22727236-22727255 Msa0634900:intron 25.0%
! ATAGTTATATCAAGAGAGTA+TGG + chr4_3:22727316-22727335 None:intergenic 25.0%
! ACTAAGATTAATTGTAGACA+AGG + chr4_3:22727765-22727784 None:intergenic 25.0%
! AATCTAGGAACTAATAACAA+CGG + chr4_3:22728207-22728226 None:intergenic 25.0%
! AATGGGAATCAATAAATCTA+GGG - chr4_3:22728320-22728339 Msa0634900:CDS 25.0%
! GTATGTTTATATGCCTAAAT+TGG - chr4_3:22728466-22728485 Msa0634900:five_prime_UTR 25.0%
AGAATCAGTTACAAGAAAGA+AGG + chr4_3:22720309-22720328 None:intergenic 30.0%
TATGAAGAAGATGATAGACA+TGG + chr4_3:22720386-22720405 None:intergenic 30.0%
!! TCAGTGTTATTGATTCTACT+GGG + chr4_3:22720515-22720534 None:intergenic 30.0%
ACTTTCTTGAATCAATTCTC+TGG - chr4_3:22720752-22720771 Msa0634900:three_prime_UTR 30.0%
GAAATTTCAATAACCTCTGT+AGG + chr4_3:22721033-22721052 None:intergenic 30.0%
AGCACGTATAGTAAAAAAGT+TGG - chr4_3:22721355-22721374 Msa0634900:intron 30.0%
AAAATAGGCTTAGATGGTTT+GGG - chr4_3:22721381-22721400 Msa0634900:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + chr4_3:22721491-22721510 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr4_3:22721513-22721532 None:intergenic 30.0%
GATCCAAATATGGTTTATGA+TGG - chr4_3:22721542-22721561 Msa0634900:intron 30.0%
GTTCCATCATAAACCATATT+TGG + chr4_3:22721548-22721567 None:intergenic 30.0%
GAATAAGGTTACATTTGCAT+TGG + chr4_3:22721844-22721863 None:intergenic 30.0%
TGCAAATGTAACCTTATTCA+AGG - chr4_3:22721845-22721864 Msa0634900:intron 30.0%
GCAAATGTAACCTTATTCAA+GGG - chr4_3:22721846-22721865 Msa0634900:intron 30.0%
ATTCATCAAACCCTTGAATA+AGG + chr4_3:22721859-22721878 None:intergenic 30.0%
TTTCCTTGCATTGTTTGTTT+AGG + chr4_3:22721961-22721980 None:intergenic 30.0%
CATCACTTAAAAGTCTAATG+TGG - chr4_3:22722016-22722035 Msa0634900:intron 30.0%
TCACTTAAAAGTCTAATGTG+GGG - chr4_3:22722018-22722037 Msa0634900:intron 30.0%
TACACTTGAAGAGATAACAA+GGG + chr4_3:22722240-22722259 None:intergenic 30.0%
AGAGAAAATTAGATGATGTG+TGG + chr4_3:22722321-22722340 None:intergenic 30.0%
! GTGAAACAGTGTTGAAAATA+AGG + chr4_3:22722441-22722460 None:intergenic 30.0%
TTGTGCAAATATACATCACA+TGG + chr4_3:22722478-22722497 None:intergenic 30.0%
GTAATGTTCCAAACTAACTT+TGG - chr4_3:22722567-22722586 Msa0634900:intron 30.0%
AGTATTTATAAGTGATTGGC+TGG - chr4_3:22722948-22722967 Msa0634900:intron 30.0%
CTGGACTATTTAACATCATA+TGG - chr4_3:22722967-22722986 Msa0634900:intron 30.0%
TTAAGCTAGTTATCCAAACA+AGG + chr4_3:22722993-22723012 None:intergenic 30.0%
!! TTTTCATAAGCTCTCTAAGA+TGG + chr4_3:22723134-22723153 None:intergenic 30.0%
AAACATTTGTGAGACTGTTT+GGG + chr4_3:22723208-22723227 None:intergenic 30.0%
TAAACATTTGTGAGACTGTT+TGG + chr4_3:22723209-22723228 None:intergenic 30.0%
TCAATCCAAACAGACTTAAA+TGG - chr4_3:22723253-22723272 Msa0634900:intron 30.0%
TCATTCCATTTAAGTCTGTT+TGG + chr4_3:22723261-22723280 None:intergenic 30.0%
CACGTTTAGTATCTATTAAC+AGG + chr4_3:22723303-22723322 None:intergenic 30.0%
!! TGAGCGTATTCTAAAATTAG+TGG - chr4_3:22723404-22723423 Msa0634900:intron 30.0%
!! CGTATTCTAAAATTAGTGGA+AGG - chr4_3:22723408-22723427 Msa0634900:intron 30.0%
CAATGAAAATCAGTACGAAT+CGG + chr4_3:22723612-22723631 None:intergenic 30.0%
AGGCTTGAAATTACATTACT+TGG - chr4_3:22723658-22723677 Msa0634900:intron 30.0%
AACATTCCTACTCATGTATT+TGG - chr4_3:22723706-22723725 Msa0634900:intron 30.0%
!! CCAAATTTTGAAAACATTCC+TGG + chr4_3:22723750-22723769 None:intergenic 30.0%
! CCAGGAATGTTTTCAAAATT+TGG - chr4_3:22723747-22723766 Msa0634900:intron 30.0%
AATCAAAGCGAAGATATTTC+GGG + chr4_3:22723861-22723880 None:intergenic 30.0%
GAATCAAAGCGAAGATATTT+CGG + chr4_3:22723862-22723881 None:intergenic 30.0%
AATGCAACTAAGAATGAAAC+TGG - chr4_3:22723950-22723969 Msa0634900:intron 30.0%
ATGCAACTAAGAATGAAACT+GGG - chr4_3:22723951-22723970 Msa0634900:intron 30.0%
ACATATAATTGTCATGCAGT+TGG - chr4_3:22724070-22724089 Msa0634900:intron 30.0%
TCAAGCATGCAAAAAATATC+AGG + chr4_3:22724181-22724200 None:intergenic 30.0%
GAATATATGAAGCTAATCGA+CGG + chr4_3:22724240-22724259 None:intergenic 30.0%
CACATGGAAAGATGAAAATA+AGG + chr4_3:22724268-22724287 None:intergenic 30.0%
AAATATTACTGCAATTGTCC+TGG - chr4_3:22724371-22724390 Msa0634900:intron 30.0%
GAAAATCTGGAGAAAAGTTA+TGG - chr4_3:22724452-22724471 Msa0634900:intron 30.0%
! GAGAAAAGTTATGGTAATGT+GGG - chr4_3:22724461-22724480 Msa0634900:intron 30.0%
! AGAAAAGTTATGGTAATGTG+GGG - chr4_3:22724462-22724481 Msa0634900:intron 30.0%
!! GCCCAATTCAAATTTTAAGA+TGG - chr4_3:22724734-22724753 Msa0634900:intron 30.0%
!!! ACCTTACAAACTGTTTTTGT+AGG - chr4_3:22724898-22724917 Msa0634900:intron 30.0%
TCCTACAAAAACAGTTTGTA+AGG + chr4_3:22724902-22724921 None:intergenic 30.0%
GTTGTGAATGTTTATTAGGT+AGG - chr4_3:22725470-22725489 Msa0634900:intron 30.0%
ATGTTTATTAGGTAGGTATG+CGG - chr4_3:22725477-22725496 Msa0634900:intron 30.0%
TATACCTATACTCAGCTTAA+TGG + chr4_3:22725569-22725588 None:intergenic 30.0%
GACTATTGAGATATGCAAAA+TGG + chr4_3:22725595-22725614 None:intergenic 30.0%
AATTTCAAAGTTGGAGAATG+AGG - chr4_3:22725808-22725827 Msa0634900:intron 30.0%
TCCAAACTTAAATGTGACAT+AGG - chr4_3:22725999-22726018 Msa0634900:intron 30.0%
! TCCTATGTCACATTTAAGTT+TGG + chr4_3:22726003-22726022 None:intergenic 30.0%
TACAAAAACGCTTGATCAAT+TGG - chr4_3:22726136-22726155 Msa0634900:intron 30.0%
ATAGAATCAACTTGTCTTCA+AGG + chr4_3:22726233-22726252 None:intergenic 30.0%
TAGTGACTAATAGTTGGAAT+AGG - chr4_3:22726296-22726315 Msa0634900:intron 30.0%
!! TATTTTTAAATTGGGGAAGG+AGG + chr4_3:22726710-22726729 None:intergenic 30.0%
ATTAGAAACAACGGAAATGA+TGG + chr4_3:22726754-22726773 None:intergenic 30.0%
CTGAATTGCATTAGAAACAA+CGG + chr4_3:22726763-22726782 None:intergenic 30.0%
ACGAATGAATCTTTCTAACA+TGG + chr4_3:22726864-22726883 None:intergenic 30.0%
AAGCATCAGTTACATTAAAG+AGG + chr4_3:22726889-22726908 None:intergenic 30.0%
CTATGAATCAATGTTCTACA+TGG + chr4_3:22727233-22727252 None:intergenic 30.0%
!! CATTGATTCATAGAATTGGT+TGG - chr4_3:22727240-22727259 Msa0634900:intron 30.0%
ATTAATAGTCTATCTAGCAG+TGG - chr4_3:22727264-22727283 Msa0634900:intron 30.0%
TTGTCTTCAGAATTGTGAAA+TGG + chr4_3:22727395-22727414 None:intergenic 30.0%
! TTTCACAATTCTGAAGACAA+TGG - chr4_3:22727395-22727414 Msa0634900:intron 30.0%
ATCATCAGATCAAGATTTGA+TGG + chr4_3:22727589-22727608 None:intergenic 30.0%
AAATCATGCATTTGACATAG+TGG + chr4_3:22727622-22727641 None:intergenic 30.0%
CTTATTGATGAGAATCTTGT+AGG - chr4_3:22728014-22728033 Msa0634900:CDS 30.0%
CCAACACTGTTTCAATTTAA+GGG + chr4_3:22728065-22728084 None:intergenic 30.0%
TCCAACACTGTTTCAATTTA+AGG + chr4_3:22728066-22728085 None:intergenic 30.0%
! TTGCCAATACCTTAAAGTTT+TGG - chr4_3:22728150-22728169 Msa0634900:CDS 30.0%
!! CATCCAAAACTTTAAGGTAT+TGG + chr4_3:22728156-22728175 None:intergenic 30.0%
!!! CAATACCTTAAAGTTTTGGA+TGG - chr4_3:22728154-22728173 Msa0634900:CDS 30.0%
TGTTAAAGAACTAGTGCAAA+TGG + chr4_3:22728230-22728249 None:intergenic 30.0%
! TTTGCACTAGTTCTTTAACA+TGG - chr4_3:22728230-22728249 Msa0634900:CDS 30.0%
!! TTTATTGATTCCCATTGTTG+TGG + chr4_3:22728316-22728335 None:intergenic 30.0%
CAATGGGAATCAATAAATCT+AGG - chr4_3:22728319-22728338 Msa0634900:CDS 30.0%
GGTTACATTTGTTCCAATTT+AGG + chr4_3:22728482-22728501 None:intergenic 30.0%
AAGAAAGAAGGTGGAATGAA+TGG + chr4_3:22720297-22720316 None:intergenic 35.0%
ATCAGTTACAAGAAAGAAGG+TGG + chr4_3:22720306-22720325 None:intergenic 35.0%
GTTTGTTTGAGTGATGAATG+TGG + chr4_3:22720482-22720501 None:intergenic 35.0%
!!! GATTCTACTGGGTTGTTTTT+TGG + chr4_3:22720504-22720523 None:intergenic 35.0%
!! GTCAGTGTTATTGATTCTAC+TGG + chr4_3:22720516-22720535 None:intergenic 35.0%
!! ACAAACGTTTTAACCGAGAT+GGG + chr4_3:22720538-22720557 None:intergenic 35.0%
!! AACAAACGTTTTAACCGAGA+TGG + chr4_3:22720539-22720558 None:intergenic 35.0%
!!! GTTTTGCTTGTTGGTTTTGT+TGG - chr4_3:22720686-22720705 Msa0634900:three_prime_UTR 35.0%
GTGTATACATAGGTTGCATT+TGG - chr4_3:22720840-22720859 Msa0634900:three_prime_UTR 35.0%
AGCATTTATGCAATCTCACT+TGG - chr4_3:22720894-22720913 Msa0634900:exon 35.0%
GCATTTATGCAATCTCACTT+GGG - chr4_3:22720895-22720914 Msa0634900:exon 35.0%
CATTTATGCAATCTCACTTG+GGG - chr4_3:22720896-22720915 Msa0634900:exon 35.0%
TTTCATAAGCTATCCTACAG+AGG - chr4_3:22721017-22721036 Msa0634900:intron 35.0%
CAGCATATCAAAACAGTTCA+TGG + chr4_3:22721077-22721096 None:intergenic 35.0%
CATGTCCATAAGTTGTTGTA+TGG - chr4_3:22721197-22721216 Msa0634900:intron 35.0%
CCATAAGTTGTTGTATGGTA+CGG - chr4_3:22721202-22721221 Msa0634900:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr4_3:22721375-22721394 Msa0634900:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr4_3:22721380-22721399 Msa0634900:intron 35.0%
TTGATCTACTCTTCTTACGA+CGG + chr4_3:22721432-22721451 None:intergenic 35.0%
CGTAAGAAGAGTAGATCAAA+TGG - chr4_3:22721433-22721452 Msa0634900:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr4_3:22721436-22721455 Msa0634900:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr4_3:22721520-22721539 Msa0634900:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr4_3:22721532-22721551 Msa0634900:intron 35.0%
! TGGTTTATGATGGAACACTA+TGG - chr4_3:22721552-22721571 Msa0634900:intron 35.0%
GGCTTATGAACAACTTATCT+AGG + chr4_3:22721823-22721842 None:intergenic 35.0%
TGTCCTAAACAAACAATGCA+AGG - chr4_3:22721955-22721974 Msa0634900:intron 35.0%
AATTGAATAAGTGAGCTGGT+TGG - chr4_3:22722041-22722060 Msa0634900:intron 35.0%
AAAATCCAACAACTGTCTGT+GGG + chr4_3:22722100-22722119 None:intergenic 35.0%
TAAAATCCAACAACTGTCTG+TGG + chr4_3:22722101-22722120 None:intergenic 35.0%
CTACACTTGAAGAGATAACA+AGG + chr4_3:22722241-22722260 None:intergenic 35.0%
TTGTTTGTAGCTGTTTATGC+TGG - chr4_3:22722385-22722404 Msa0634900:intron 35.0%
!! TAACATCATATGGCCTTGTT+TGG - chr4_3:22722977-22722996 Msa0634900:intron 35.0%
!! TTTTAAGTCTTTGTAGGTGG+CGG - chr4_3:22723344-22723363 Msa0634900:intron 35.0%
!! CTTGCTATTGACAAAGCAAT+TGG - chr4_3:22723444-22723463 Msa0634900:intron 35.0%
GACAAAGCAATTGGAGAAAA+TGG - chr4_3:22723453-22723472 Msa0634900:intron 35.0%
AATTGGAGAAAATGGCTTCA+AGG - chr4_3:22723461-22723480 Msa0634900:intron 35.0%
TAAGTTTCTTCCGTATGTAC+TGG - chr4_3:22723557-22723576 Msa0634900:intron 35.0%
AAGTTTCTTCCGTATGTACT+GGG - chr4_3:22723558-22723577 Msa0634900:intron 35.0%
GAAATTGGATTGATATCTCC+AGG - chr4_3:22723680-22723699 Msa0634900:intron 35.0%
ATGAGTAGGAATGTTATTCC+TGG + chr4_3:22723701-22723720 None:intergenic 35.0%
TTCGCTTTGATTCATCATAG+AGG - chr4_3:22723869-22723888 Msa0634900:intron 35.0%
ATAATTGTCATGCAGTTGGT+TGG - chr4_3:22724074-22724093 Msa0634900:intron 35.0%
TAATTGTCATGCAGTTGGTT+GGG - chr4_3:22724075-22724094 Msa0634900:intron 35.0%
CAATCACAAAACAACACACA+TGG + chr4_3:22724284-22724303 None:intergenic 35.0%
TTTGTGATTGAAGTACGAGA+TGG - chr4_3:22724294-22724313 Msa0634900:intron 35.0%
TAAGGTTTCAAGAAATTGCC+AGG + chr4_3:22724392-22724411 None:intergenic 35.0%
! CTCCAGATTTTCCTTGATTT+CGG + chr4_3:22724444-22724463 None:intergenic 35.0%
! GGAGAAAAGTTATGGTAATG+TGG - chr4_3:22724460-22724479 Msa0634900:intron 35.0%
! GAAAAGTTATGGTAATGTGG+GGG - chr4_3:22724463-22724482 Msa0634900:intron 35.0%
! AAATTGTGTTGATAAGCGGT+GGG - chr4_3:22724678-22724697 Msa0634900:intron 35.0%
GCTTTATGCCTAAGCTTATT+TGG - chr4_3:22725149-22725168 Msa0634900:intron 35.0%
TAATCCAGCCAAATAAGCTT+AGG + chr4_3:22725160-22725179 None:intergenic 35.0%
GCTGGTTGTGAATGTTTATT+AGG - chr4_3:22725466-22725485 Msa0634900:intron 35.0%
GGTTTCATTACTTAGAAAGC+AGG + chr4_3:22725665-22725684 None:intergenic 35.0%
!! TTCTAAAATTCTGGCCTCAT+AGG - chr4_3:22725833-22725852 Msa0634900:intron 35.0%
! GAAAATGGGAAGCCAATTTT+CGG + chr4_3:22725885-22725904 None:intergenic 35.0%
ATGGAAAGGGTCATGAAAAT+GGG + chr4_3:22725899-22725918 None:intergenic 35.0%
TATGGAAAGGGTCATGAAAA+TGG + chr4_3:22725900-22725919 None:intergenic 35.0%
! TCATGACCCTTTCCATATTT+TGG - chr4_3:22725903-22725922 Msa0634900:intron 35.0%
CGTTACAAAGGATAGAACTA+TGG - chr4_3:22726113-22726132 Msa0634900:CDS 35.0%
!! AGACAAGTTGATTCTATAGC+AGG - chr4_3:22726236-22726255 Msa0634900:intron 35.0%
TTGTAGCACACATATCAAAG+AGG - chr4_3:22726340-22726359 Msa0634900:intron 35.0%
GGGAAAAGACAATAACAATC+TGG + chr4_3:22726544-22726563 None:intergenic 35.0%
! GTCTTTTCCCTGTAATAAAC+TGG - chr4_3:22726554-22726573 Msa0634900:intron 35.0%
!!! TCCATGTGATGTCAGTTTTT+TGG - chr4_3:22726588-22726607 Msa0634900:intron 35.0%
TCCAAAAAACTGACATCACA+TGG + chr4_3:22726592-22726611 None:intergenic 35.0%
AGCTTGACCTTGTATTCTTT+AGG - chr4_3:22726615-22726634 Msa0634900:intron 35.0%
GCTTGACCTTGTATTCTTTA+GGG - chr4_3:22726616-22726635 Msa0634900:intron 35.0%
ATCTGTCCCTAAAGAATACA+AGG + chr4_3:22726625-22726644 None:intergenic 35.0%
!! CGTTGTTTCTAATGCAATTC+AGG - chr4_3:22726761-22726780 Msa0634900:intron 35.0%
TCAACCAAGTGTTATCTGAT+GGG + chr4_3:22726819-22726838 None:intergenic 35.0%
ATCAACCAAGTGTTATCTGA+TGG + chr4_3:22726820-22726839 None:intergenic 35.0%
GAATCTGAACTTAGTTCACT+TGG - chr4_3:22726926-22726945 Msa0634900:intron 35.0%
ATATGTCACAAAGCTTGCAA+AGG - chr4_3:22727009-22727028 Msa0634900:intron 35.0%
AATGTTTCTTTGTCTTGGAG+TGG - chr4_3:22727195-22727214 Msa0634900:intron 35.0%
ATGTTTCTTTGTCTTGGAGT+GGG - chr4_3:22727196-22727215 Msa0634900:intron 35.0%
AACCTATGTCAGGACTATAA+AGG + chr4_3:22727428-22727447 None:intergenic 35.0%
ATTTGGATTTCCTGCATTGT+TGG - chr4_3:22727485-22727504 Msa0634900:intron 35.0%
AAACAGGTCTAAAAGCAAGT+TGG + chr4_3:22727552-22727571 None:intergenic 35.0%
! ACTTCTTTTCGTTACAATGC+AGG - chr4_3:22727802-22727821 Msa0634900:intron 35.0%
TGATAGATGAGAGAGAATCA+AGG - chr4_3:22727950-22727969 Msa0634900:intron 35.0%
TAATTTACAAGGGGAATGCT+AGG + chr4_3:22727987-22728006 None:intergenic 35.0%
ATTTAAGGGAGCAACACAAA+AGG + chr4_3:22728051-22728070 None:intergenic 35.0%
CCCTTAAATTGAAACAGTGT+TGG - chr4_3:22728062-22728081 Msa0634900:CDS 35.0%
CATCTCCATCCAAAACTTTA+AGG + chr4_3:22728162-22728181 None:intergenic 35.0%
!!! TAAAGTTTTGGATGGAGATG+TGG - chr4_3:22728162-22728181 Msa0634900:CDS 35.0%
AACTAGTGCAAATGGAATCT+AGG + chr4_3:22728222-22728241 None:intergenic 35.0%
TAGTTCTTTAACATGGTCAG+AGG - chr4_3:22728237-22728256 Msa0634900:CDS 35.0%
AGTTCTTTAACATGGTCAGA+GGG - chr4_3:22728238-22728257 Msa0634900:CDS 35.0%
TAAATCTAGGGACACACAAA+TGG - chr4_3:22728332-22728351 Msa0634900:CDS 35.0%
AAATCTAGGGACACACAAAT+GGG - chr4_3:22728333-22728352 Msa0634900:CDS 35.0%
GAAGAAGATGATAGACATGG+TGG + chr4_3:22720383-22720402 None:intergenic 40.0%
TCAATAACACTGACCCATCT+CGG - chr4_3:22720522-22720541 Msa0634900:three_prime_UTR 40.0%
AAGAGGTGAATCTGAGAAAG+AGG - chr4_3:22720616-22720635 Msa0634900:three_prime_UTR 40.0%
AAGCAAAACACCAGCCAAAA+GGG + chr4_3:22720675-22720694 None:intergenic 40.0%
!!! TTGCTTGTTGGTTTTGTTGG+TGG - chr4_3:22720689-22720708 Msa0634900:three_prime_UTR 40.0%
!! TTGGTGGTTTTGCTTCTGTT+GGG - chr4_3:22720705-22720724 Msa0634900:three_prime_UTR 40.0%
! CAATTCTCTGGCTTCATTGA+AGG - chr4_3:22720764-22720783 Msa0634900:three_prime_UTR 40.0%
CTATGTATACACTGCATGTC+TGG + chr4_3:22720832-22720851 None:intergenic 40.0%
CAGACATGCAGTGTATACAT+AGG - chr4_3:22720830-22720849 Msa0634900:three_prime_UTR 40.0%
TCCACATGTTTAAGCACTTG+TGG - chr4_3:22721141-22721160 Msa0634900:intron 40.0%
CCACATGTTTAAGCACTTGT+GGG - chr4_3:22721142-22721161 Msa0634900:intron 40.0%
CCGTACCATACAACAACTTA+TGG + chr4_3:22721205-22721224 None:intergenic 40.0%
CACTTACTTGATTCTCGTGT+TGG + chr4_3:22721247-22721266 None:intergenic 40.0%
CGAGAATCAAGTAAGTGTAG+CGG - chr4_3:22721250-22721269 Msa0634900:CDS 40.0%
GGATAAGTGGTAAGACTAGA+CGG - chr4_3:22721291-22721310 Msa0634900:CDS 40.0%
GATAAGTGGTAAGACTAGAC+GGG - chr4_3:22721292-22721311 Msa0634900:CDS 40.0%
TCTTCTTACGACGGTATCTA+CGG + chr4_3:22721423-22721442 None:intergenic 40.0%
AAAGAGGTAGAAGAAGACCT+AGG - chr4_3:22721471-22721490 Msa0634900:intron 40.0%
! AAAGCCTTATCCCACTACTA+GGG + chr4_3:22721602-22721621 None:intergenic 40.0%
AGTGCACTTATCAAAGAGCT+TGG - chr4_3:22722127-22722146 Msa0634900:intron 40.0%
CGTAAGCTCTTAGAGATAGT+TGG - chr4_3:22722200-22722219 Msa0634900:intron 40.0%
! TTAGATGATGTGTGGTCTTG+TGG + chr4_3:22722313-22722332 None:intergenic 40.0%
! TATCCATTCTTTTGGTGAGC+AGG - chr4_3:22722340-22722359 Msa0634900:intron 40.0%
TAACCTGCTCACCAAAAGAA+TGG + chr4_3:22722346-22722365 None:intergenic 40.0%
! TTCTTTTGGTGAGCAGGTTA+TGG - chr4_3:22722346-22722365 Msa0634900:intron 40.0%
TGTAGCTGTTTATGCTGGAT+TGG - chr4_3:22722390-22722409 Msa0634900:intron 40.0%
! TTATGCTGGATTGGAGGTAT+CGG - chr4_3:22722399-22722418 Msa0634900:intron 40.0%
AAGGGATCCAAAAAGAAGTC+CGG + chr4_3:22722650-22722669 None:intergenic 40.0%
! CTTCTTTTTGGATCCCTTAC+CGG - chr4_3:22722652-22722671 Msa0634900:intron 40.0%
ACCATCATAGTCTCTATCAG+TGG - chr4_3:22722676-22722695 Msa0634900:intron 40.0%
TCCACTGATAGAGACTATGA+TGG + chr4_3:22722680-22722699 None:intergenic 40.0%
CCAAAGAAAATGGCAGCAAA+GGG + chr4_3:22723509-22723528 None:intergenic 40.0%
!!! CCTTTGCTGCCATTTTCTTT+GGG - chr4_3:22723507-22723526 Msa0634900:intron 40.0%
!!! CTTTGCTGCCATTTTCTTTG+GGG - chr4_3:22723508-22723527 Msa0634900:intron 40.0%
AATTGTCATGCAGTTGGTTG+GGG - chr4_3:22724076-22724095 Msa0634900:intron 40.0%
!!! TATGTTAGTGCTGGTGCTTT+TGG - chr4_3:22724120-22724139 Msa0634900:intron 40.0%
TGAAACCTTACTGAAAGTCC+AGG - chr4_3:22724402-22724421 Msa0634900:intron 40.0%
CTAAACCTGGACTTTCAGTA+AGG + chr4_3:22724410-22724429 None:intergenic 40.0%
CTTACTGAAAGTCCAGGTTT+AGG - chr4_3:22724408-22724427 Msa0634900:intron 40.0%
! TTTTCCTTGATTTCGGCCAA+AGG + chr4_3:22724437-22724456 None:intergenic 40.0%
! GAAATTGTGTTGATAAGCGG+TGG - chr4_3:22724677-22724696 Msa0634900:intron 40.0%
AATTGGGCCTAACTCAAAAC+CGG + chr4_3:22724722-22724741 None:intergenic 40.0%
TGAGTCTATCCAAGATCCAT+TGG - chr4_3:22724761-22724780 Msa0634900:intron 40.0%
! TTGACATCTAGAGTGTGACT+GGG + chr4_3:22724792-22724811 None:intergenic 40.0%
! TTTGACATCTAGAGTGTGAC+TGG + chr4_3:22724793-22724812 None:intergenic 40.0%
GCTCATTTCTCATCTGATGT+GGG + chr4_3:22724846-22724865 None:intergenic 40.0%
AGCTCATTTCTCATCTGATG+TGG + chr4_3:22724847-22724866 None:intergenic 40.0%
GTTGCTTACATCCTGTCTAT+GGG - chr4_3:22724973-22724992 Msa0634900:intron 40.0%
GAATGATCTTTCTGTTGTCG+AGG - chr4_3:22725035-22725054 Msa0634900:intron 40.0%
TTGACCAAGAATTGTTTGGC+AGG - chr4_3:22725099-22725118 Msa0634900:intron 40.0%
AAGCTTAGGCATAAAGCAAC+TGG + chr4_3:22725146-22725165 None:intergenic 40.0%
TATGCCTAAGCTTATTTGGC+TGG - chr4_3:22725153-22725172 Msa0634900:intron 40.0%
! ATTTGGCTGGATTAGACCAA+AGG - chr4_3:22725166-22725185 Msa0634900:intron 40.0%
ATGACTCTACAGGAATGCAA+GGG + chr4_3:22725423-22725442 None:intergenic 40.0%
AATGACTCTACAGGAATGCA+AGG + chr4_3:22725424-22725443 None:intergenic 40.0%
CATTCCTGTAGAGTCATTCA+GGG - chr4_3:22725426-22725445 Msa0634900:intron 40.0%
CTCATAGCAGCCACATAATT+GGG - chr4_3:22725533-22725552 Msa0634900:intron 40.0%
CTGTACACGTCCTCTTAAAA+AGG + chr4_3:22725622-22725641 None:intergenic 40.0%
CATTACTTAGAAAGCAGGTC+AGG + chr4_3:22725660-22725679 None:intergenic 40.0%
TACCTCTCTATTTGAGTCAG+GGG + chr4_3:22725763-22725782 None:intergenic 40.0%
GTACCTCTCTATTTGAGTCA+GGG + chr4_3:22725764-22725783 None:intergenic 40.0%
TGTACCTCTCTATTTGAGTC+AGG + chr4_3:22725765-22725784 None:intergenic 40.0%
! CAATTTTCGGTCAGTCTTCA+TGG + chr4_3:22725872-22725891 None:intergenic 40.0%
CATGAAGACTGACCGAAAAT+TGG - chr4_3:22725870-22725889 Msa0634900:intron 40.0%
CTCTGGCCAAAATATGGAAA+GGG + chr4_3:22725912-22725931 None:intergenic 40.0%
ACTCTGGCCAAAATATGGAA+AGG + chr4_3:22725913-22725932 None:intergenic 40.0%
!!! TTCCATATTTTGGCCAGAGT+TGG - chr4_3:22725913-22725932 Msa0634900:intron 40.0%
GTACAAGCTTAACCTACCAA+AGG - chr4_3:22725945-22725964 Msa0634900:intron 40.0%
AAATTCTCGAGTCCTTTGGT+AGG + chr4_3:22725960-22725979 None:intergenic 40.0%
ATAGGAAACTACCAAGTGCA+GGG - chr4_3:22726017-22726036 Msa0634900:intron 40.0%
!! ACTTTTCCCAGAACTGGTTT+AGG + chr4_3:22726090-22726109 None:intergenic 40.0%
GGGAAAAGTAAGCGTTACAA+AGG - chr4_3:22726101-22726120 Msa0634900:CDS 40.0%
GATCAATTGGAAAGACAGCT+CGG - chr4_3:22726149-22726168 Msa0634900:intron 40.0%
CTCGGTTGAAAATGTCACAT+AGG - chr4_3:22726167-22726186 Msa0634900:intron 40.0%
GGTTGAAAATGTCACATAGG+AGG - chr4_3:22726170-22726189 Msa0634900:intron 40.0%
TTGTCTTCAAGGCTGAACTT+CGG + chr4_3:22726222-22726241 None:intergenic 40.0%
TATTGTTAGCGATCGTGAAG+TGG - chr4_3:22726262-22726281 Msa0634900:intron 40.0%
TCCAACTATTAGTCACTAGC+TGG + chr4_3:22726294-22726313 None:intergenic 40.0%
!! AAAAGAGTGCTGAGTTGACA+AGG - chr4_3:22726363-22726382 Msa0634900:CDS 40.0%
!! AAAGAGTGCTGAGTTGACAA+GGG - chr4_3:22726364-22726383 Msa0634900:CDS 40.0%
ATTCTGTTACAGGAGAGAGA+TGG - chr4_3:22726458-22726477 Msa0634900:intron 40.0%
! CCATTTTACAACTGTCTCTG+AGG + chr4_3:22726656-22726675 None:intergenic 40.0%
CCTCAGAGACAGTTGTAAAA+TGG - chr4_3:22726653-22726672 Msa0634900:intron 40.0%
GCTCAGTTCAAAGAGCAAAA+TGG + chr4_3:22726797-22726816 None:intergenic 40.0%
TCTGAACTTAGTTCACTTGG+AGG - chr4_3:22726929-22726948 Msa0634900:intron 40.0%
ATATGTAGCAGCTAATGCAG+TGG + chr4_3:22726993-22727012 None:intergenic 40.0%
ATGCACTAAGAGGGTAAAGT+TGG + chr4_3:22727114-22727133 None:intergenic 40.0%
TACCCTCTTAGTGCATCATT+AGG - chr4_3:22727118-22727137 Msa0634900:intron 40.0%
ACCCTCTTAGTGCATCATTA+GGG - chr4_3:22727119-22727138 Msa0634900:intron 40.0%
TCCCTAATGATGCACTAAGA+GGG + chr4_3:22727123-22727142 None:intergenic 40.0%
ATCCCTAATGATGCACTAAG+AGG + chr4_3:22727124-22727143 None:intergenic 40.0%
AAATCCAAATCCAACCGCAA+GGG + chr4_3:22727475-22727494 None:intergenic 40.0%
GGCTGCTAACTTTAGTAAAC+AGG + chr4_3:22727568-22727587 None:intergenic 40.0%
CACATCATTGAAAACTCCAG+AGG + chr4_3:22727676-22727695 None:intergenic 40.0%
CTTCATTCGCAAATGTGTGT+CGG + chr4_3:22727876-22727895 None:intergenic 40.0%
AATGAAGGCAGGTCTATGAT+CGG - chr4_3:22727889-22727908 Msa0634900:intron 40.0%
TGAGAGAGAATCAAGGAAAG+TGG - chr4_3:22727957-22727976 Msa0634900:intron 40.0%
GATGTGGTGTCTTAATCTCT+TGG - chr4_3:22728178-22728197 Msa0634900:CDS 40.0%
TACTTACCCATCCACAACAA+TGG - chr4_3:22728302-22728321 Msa0634900:CDS 40.0%
ACTTACCCATCCACAACAAT+GGG - chr4_3:22728303-22728322 Msa0634900:CDS 40.0%
TGATTCCCATTGTTGTGGAT+GGG + chr4_3:22728311-22728330 None:intergenic 40.0%
TTGATTCCCATTGTTGTGGA+TGG + chr4_3:22728312-22728331 None:intergenic 40.0%
GAAGATGATAGACATGGTGG+TGG + chr4_3:22720380-22720399 None:intergenic 45.0%
AGGTGAATCTGAGAAAGAGG+AGG - chr4_3:22720619-22720638 Msa0634900:three_prime_UTR 45.0%
ATCTGAGAAAGAGGAGGAAG+AGG - chr4_3:22720625-22720644 Msa0634900:three_prime_UTR 45.0%
AAAGAGGAGGAAGAGGATGA+TGG - chr4_3:22720632-22720651 Msa0634900:three_prime_UTR 45.0%
!! GATGATGGTGCTGCTTTGAA+GGG - chr4_3:22720647-22720666 Msa0634900:three_prime_UTR 45.0%
!!! TGCTTTGAAGGGTACCCTTT+TGG - chr4_3:22720658-22720677 Msa0634900:three_prime_UTR 45.0%
CAAGCAAAACACCAGCCAAA+AGG + chr4_3:22720676-22720695 None:intergenic 45.0%
! TTGGCTGGTGTTTTGCTTGT+TGG - chr4_3:22720677-22720696 Msa0634900:three_prime_UTR 45.0%
!!! GTTGGTGGTTTTGCTTCTGT+TGG - chr4_3:22720704-22720723 Msa0634900:three_prime_UTR 45.0%
! CAAACATACTCAGAGCGCTA+GGG + chr4_3:22721101-22721120 None:intergenic 45.0%
CCCACAAGTGCTTAAACATG+TGG + chr4_3:22721145-22721164 None:intergenic 45.0%
TGGGACTGTTTGAGCGAATT+TGG - chr4_3:22721161-22721180 Msa0634900:intron 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr4_3:22721210-22721229 Msa0634900:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr4_3:22721211-22721230 Msa0634900:intron 45.0%
! AAGTAAGTGTAGCGGAGAAG+AGG - chr4_3:22721258-22721277 Msa0634900:CDS 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr4_3:22721328-22721347 Msa0634900:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr4_3:22721329-22721348 Msa0634900:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr4_3:22721330-22721349 Msa0634900:intron 45.0%
CTTCTTACGACGGTATCTAC+GGG + chr4_3:22721422-22721441 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr4_3:22721445-22721464 Msa0634900:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr4_3:22721455-22721474 Msa0634900:intron 45.0%
! AAGCCTTATCCCACTACTAG+GGG + chr4_3:22721601-22721620 None:intergenic 45.0%
! CAAAGCCTTATCCCACTACT+AGG + chr4_3:22721603-22721622 None:intergenic 45.0%
CTGACACATGCACTACTGTT+TGG + chr4_3:22721792-22721811 None:intergenic 45.0%
ACAGTAGTGCATGTGTCAGT+TGG - chr4_3:22721793-22721812 Msa0634900:CDS 45.0%
GGGGAATTGAATAAGTGAGC+TGG - chr4_3:22722037-22722056 Msa0634900:intron 45.0%
! AGCTGTTTATGCTGGATTGG+AGG - chr4_3:22722393-22722412 Msa0634900:intron 45.0%
ATTCCCTTAACCATGTCAGC+CGG - chr4_3:22722628-22722647 Msa0634900:intron 45.0%
AAAAAGAAGTCCGGCTGACA+TGG + chr4_3:22722641-22722660 None:intergenic 45.0%
! ATGTCAGCCGGACTTCTTTT+TGG - chr4_3:22722640-22722659 Msa0634900:intron 45.0%
! GATAGAGACTATGATGGTGC+CGG + chr4_3:22722674-22722693 None:intergenic 45.0%
!!! CCCTTTGCTGCCATTTTCTT+TGG - chr4_3:22723506-22723525 Msa0634900:intron 45.0%
CCCAAAGAAAATGGCAGCAA+AGG + chr4_3:22723510-22723529 None:intergenic 45.0%
TTCTTCCGTATGTACTGGGA+AGG - chr4_3:22723562-22723581 Msa0634900:intron 45.0%
CCATACCTTCCCAGTACATA+CGG + chr4_3:22723570-22723589 None:intergenic 45.0%
CTAACATAAGCCCATGTTCC+TGG + chr4_3:22724108-22724127 None:intergenic 45.0%
ACATGGGCTTATGTTAGTGC+TGG - chr4_3:22724111-22724130 Msa0634900:intron 45.0%
! GTCCAGGTTTAGGTTTCCTT+TGG - chr4_3:22724418-22724437 Msa0634900:intron 45.0%
GTTTCCTTTGGCCGAAATCA+AGG - chr4_3:22724430-22724449 Msa0634900:intron 45.0%
GGCCGAAATCAAGGAAAATC+TGG - chr4_3:22724439-22724458 Msa0634900:intron 45.0%
! GGTGCGAGATCAGAATGTTT+TGG - chr4_3:22724544-22724563 Msa0634900:intron 45.0%
TAACTCAAAACCGGCCTGTA+CGG + chr4_3:22724713-22724732 None:intergenic 45.0%
! TGACATCTAGAGTGTGACTG+GGG + chr4_3:22724791-22724810 None:intergenic 45.0%
CACACTCTAGATGTCAAACC+CGG - chr4_3:22724795-22724814 Msa0634900:intron 45.0%
GGTTGCTTACATCCTGTCTA+TGG - chr4_3:22724972-22724991 Msa0634900:intron 45.0%
CAGACCTGCCAAACAATTCT+TGG + chr4_3:22725106-22725125 None:intergenic 45.0%
CAAGAATTGTTTGGCAGGTC+TGG - chr4_3:22725104-22725123 Msa0634900:intron 45.0%
! GCAGGTCTGGTATCGAATAT+GGG - chr4_3:22725117-22725136 Msa0634900:intron 45.0%
! TGGATTAGACCAAAGGTCAG+AGG - chr4_3:22725173-22725192 Msa0634900:intron 45.0%
GGATTAGACCAAAGGTCAGA+GGG - chr4_3:22725174-22725193 Msa0634900:CDS 45.0%
GATTAGACCAAAGGTCAGAG+GGG - chr4_3:22725175-22725194 Msa0634900:CDS 45.0%
AACAGGGCCATCATCAGAAA+CGG + chr4_3:22725305-22725324 None:intergenic 45.0%
CTAACGCATCTTCCTGAACA+GGG + chr4_3:22725321-22725340 None:intergenic 45.0%
ACTAACGCATCTTCCTGAAC+AGG + chr4_3:22725322-22725341 None:intergenic 45.0%
GCATTCCTGTAGAGTCATTC+AGG - chr4_3:22725425-22725444 Msa0634900:intron 45.0%
GCTATGAGGCAAAGTAGCAT+AGG + chr4_3:22725521-22725540 None:intergenic 45.0%
CCAATTATGTGGCTGCTATG+AGG + chr4_3:22725535-22725554 None:intergenic 45.0%
CCTCATAGCAGCCACATAAT+TGG - chr4_3:22725532-22725551 Msa0634900:intron 45.0%
AGCCACATAATTGGGCTCAT+CGG - chr4_3:22725541-22725560 Msa0634900:intron 45.0%
GGGTCCATTAAGCTGAGTAT+AGG - chr4_3:22725562-22725581 Msa0634900:intron 45.0%
CTTAGAAAGCAGGTCAGGTT+TGG + chr4_3:22725655-22725674 None:intergenic 45.0%
! GTTATTTGGAGCTCGAGTTG+TGG + chr4_3:22725736-22725755 None:intergenic 45.0%
GAGTCAGGGGCTTAGTTATT+TGG + chr4_3:22725750-22725769 None:intergenic 45.0%
CTCCAACTCTGGCCAAAATA+TGG + chr4_3:22725918-22725937 None:intergenic 45.0%
!!! TATTTTGGCCAGAGTTGGAG+AGG - chr4_3:22725918-22725937 Msa0634900:intron 45.0%
GGGTAAATTCTCGAGTCCTT+TGG + chr4_3:22725964-22725983 None:intergenic 45.0%
CATAGGAAACTACCAAGTGC+AGG - chr4_3:22726016-22726035 Msa0634900:intron 45.0%
TAGGAAACTACCAAGTGCAG+GGG - chr4_3:22726018-22726037 Msa0634900:intron 45.0%
GTTAAACTTCCAGCTACCCA+TGG + chr4_3:22726050-22726069 None:intergenic 45.0%
TTAGGCTCAGCATCAGATTC+AGG + chr4_3:22726072-22726091 None:intergenic 45.0%
!! ACGCTTACTTTTCCCAGAAC+TGG + chr4_3:22726096-22726115 None:intergenic 45.0%
TGTCTTCAAGGCTGAACTTC+GGG + chr4_3:22726221-22726240 None:intergenic 45.0%
TTAGCGATCGTGAAGTGGAA+TGG - chr4_3:22726267-22726286 Msa0634900:intron 45.0%
TAGCGATCGTGAAGTGGAAT+GGG - chr4_3:22726268-22726287 Msa0634900:intron 45.0%
GCCAGCTAGTGACTAATAGT+TGG - chr4_3:22726290-22726309 Msa0634900:intron 45.0%
TAATAGTTGGAATAGGCCCC+AGG - chr4_3:22726303-22726322 Msa0634900:intron 45.0%
TGGCTGGAGTTAGTTGTATC+AGG - chr4_3:22726404-22726423 Msa0634900:intron 45.0%
GGCTGGAGTTAGTTGTATCA+GGG - chr4_3:22726405-22726424 Msa0634900:intron 45.0%
! TTCTTTTATGAGGGAGCCAC+TGG - chr4_3:22726496-22726515 Msa0634900:intron 45.0%
GCTGCTGCCAGTTTATTACA+GGG + chr4_3:22726564-22726583 None:intergenic 45.0%
AGCTGCTGCCAGTTTATTAC+AGG + chr4_3:22726565-22726584 None:intergenic 45.0%
TGAGCCCATCAGATAACACT+TGG - chr4_3:22726812-22726831 Msa0634900:intron 45.0%
CGCCTTTATAGTCCTGACAT+AGG - chr4_3:22727423-22727442 Msa0634900:intron 45.0%
TCCTGACATAGGTTCATACC+TGG - chr4_3:22727434-22727453 Msa0634900:intron 45.0%
CCTGACATAGGTTCATACCT+GGG - chr4_3:22727435-22727454 Msa0634900:intron 45.0%
AATCCAAATCCAACCGCAAG+GGG + chr4_3:22727474-22727493 None:intergenic 45.0%
GAAATCCAAATCCAACCGCA+AGG + chr4_3:22727476-22727495 None:intergenic 45.0%
ATACTGACAGCCAACAATGC+AGG + chr4_3:22727498-22727517 None:intergenic 45.0%
TTGAAAACTCCAGAGGACGA+GGG + chr4_3:22727669-22727688 None:intergenic 45.0%
ATTGAAAACTCCAGAGGACG+AGG + chr4_3:22727670-22727689 None:intergenic 45.0%
CGACACACATTTGCGAATGA+AGG - chr4_3:22727874-22727893 Msa0634900:intron 45.0%
ACACATTTGCGAATGAAGGC+AGG - chr4_3:22727878-22727897 Msa0634900:intron 45.0%
GTGGTGTCTTAATCTCTTGG+TGG - chr4_3:22728181-22728200 Msa0634900:CDS 45.0%
TGTGGATGGGTAAGTACAAG+AGG + chr4_3:22728298-22728317 None:intergenic 45.0%
!! AATTTAAATAAATCTATAAA+AGG + chr4_3:22724491-22724510 None:intergenic 5.0%
!! TTTATAGATTTATTTAAATT+AGG - chr4_3:22724491-22724510 Msa0634900:intron 5.0%
!!! TATTTTTTATTTTTAAATTG+GGG + chr4_3:22726717-22726736 None:intergenic 5.0%
!! GGATGATGGTGCTGCTTTGA+AGG - chr4_3:22720646-22720665 Msa0634900:three_prime_UTR 50.0%
!!! TTGAAGGGTACCCTTTTGGC+TGG - chr4_3:22720662-22720681 Msa0634900:three_prime_UTR 50.0%
! CCAAACATACTCAGAGCGCT+AGG + chr4_3:22721102-22721121 None:intergenic 50.0%
! CCTAGCGCTCTGAGTATGTT+TGG - chr4_3:22721099-22721118 Msa0634900:intron 50.0%
AGGATGTTGCGCTGGATAAG+TGG - chr4_3:22721278-22721297 Msa0634900:CDS 50.0%
GTGGTAAGACTAGACGGGAT+AGG - chr4_3:22721297-22721316 Msa0634900:CDS 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr4_3:22721331-22721350 Msa0634900:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr4_3:22721336-22721355 None:intergenic 50.0%
ACTACTAGGGGTCAGCTACA+TGG + chr4_3:22721589-22721608 None:intergenic 50.0%
ATGTAGCTGACCCCTAGTAG+TGG - chr4_3:22721588-22721607 Msa0634900:intron 50.0%
TGTAGCTGACCCCTAGTAGT+GGG - chr4_3:22721589-22721608 Msa0634900:intron 50.0%
! TGACCCCTAGTAGTGGGATA+AGG - chr4_3:22721595-22721614 Msa0634900:intron 50.0%
AACCTCCCACAGACAGTTGT+TGG - chr4_3:22722092-22722111 Msa0634900:intron 50.0%
ATCCAACAACTGTCTGTGGG+AGG + chr4_3:22722097-22722116 None:intergenic 50.0%
TGAGCAGGTTATGGTTCAGC+TGG - chr4_3:22722355-22722374 Msa0634900:intron 50.0%
GGCAGGAATTGCAAGGATCT+GGG + chr4_3:22722608-22722627 None:intergenic 50.0%
TGGCAGGAATTGCAAGGATC+TGG + chr4_3:22722609-22722628 None:intergenic 50.0%
AGGGAATGGCAGGAATTGCA+AGG + chr4_3:22722615-22722634 None:intergenic 50.0%
GACATGGTTAAGGGAATGGC+AGG + chr4_3:22722625-22722644 None:intergenic 50.0%
GGCTGACATGGTTAAGGGAA+TGG + chr4_3:22722629-22722648 None:intergenic 50.0%
AGTCCGGCTGACATGGTTAA+GGG + chr4_3:22722634-22722653 None:intergenic 50.0%
AAGTCCGGCTGACATGGTTA+AGG + chr4_3:22722635-22722654 None:intergenic 50.0%
!! GACTATGATGGTGCCGGTAA+GGG + chr4_3:22722668-22722687 None:intergenic 50.0%
!! AGACTATGATGGTGCCGGTA+AGG + chr4_3:22722669-22722688 None:intergenic 50.0%
CAAAGGGCTCAAACGAAGCA+GGG + chr4_3:22723493-22723512 None:intergenic 50.0%
CCGTATGTACTGGGAAGGTA+TGG - chr4_3:22723567-22723586 Msa0634900:intron 50.0%
GGCCAAAGGAAACCTAAACC+TGG + chr4_3:22724423-22724442 None:intergenic 50.0%
!!! GTACAGGCCGGTTTTGAGTT+AGG - chr4_3:22724712-22724731 Msa0634900:intron 50.0%
ACTCTAGATGTCAAACCCGG+TGG - chr4_3:22724798-22724817 Msa0634900:intron 50.0%
ATGTCAAACCCGGTGGTGAT+GGG - chr4_3:22724805-22724824 Msa0634900:intron 50.0%
! GGCAGGTCTGGTATCGAATA+TGG - chr4_3:22725116-22725135 Msa0634900:intron 50.0%
AGCACGTGGAACTCCTCTTT+CGG + chr4_3:22725265-22725284 None:intergenic 50.0%
GGACAGACCGTTTCTGATGA+TGG - chr4_3:22725295-22725314 Msa0634900:CDS 50.0%
!! TTCTGATGATGGCCCTGTTC+AGG - chr4_3:22725306-22725325 Msa0634900:CDS 50.0%
CAGGAATGCAAGGGAACTCT+TGG + chr4_3:22725414-22725433 None:intergenic 50.0%
GTAGCCCTGAATGACTCTAC+AGG + chr4_3:22725433-22725452 None:intergenic 50.0%
CAGGGCTACACTCTTAAAGC+TGG - chr4_3:22725444-22725463 Msa0634900:intron 50.0%
GCTACACTCTTAAAGCTGGC+TGG - chr4_3:22725448-22725467 Msa0634900:intron 50.0%
GCCACATAATTGGGCTCATC+GGG - chr4_3:22725542-22725561 Msa0634900:intron 50.0%
ACCCGATGAGCCCAATTATG+TGG + chr4_3:22725546-22725565 None:intergenic 50.0%
AGAAAGCAGGTCAGGTTTGG+TGG + chr4_3:22725652-22725671 None:intergenic 50.0%
TGAAACCAAAGTCGCTGCTG+TGG - chr4_3:22725678-22725697 Msa0634900:intron 50.0%
AGCCCCTGACTCAAATAGAG+AGG - chr4_3:22725758-22725777 Msa0634900:intron 50.0%
GCAACAGACTGTTGCCTATG+AGG + chr4_3:22725850-22725869 None:intergenic 50.0%
GTACTACACCTCTCCAACTC+TGG + chr4_3:22725929-22725948 None:intergenic 50.0%
AGGAAACTACCAAGTGCAGG+GGG - chr4_3:22726019-22726038 Msa0634900:intron 50.0%
TGCTGAGCCTAAACCAGTTC+TGG - chr4_3:22726080-22726099 Msa0634900:CDS 50.0%
GCTGAGCCTAAACCAGTTCT+GGG - chr4_3:22726081-22726100 Msa0634900:CDS 50.0%
CTGAACTTCGGGAACTGGTT+AGG + chr4_3:22726210-22726229 None:intergenic 50.0%
! AGTGCTGAGTTGACAAGGGA+GGG - chr4_3:22726368-22726387 Msa0634900:CDS 50.0%
AGTATATCAGCCCAAGCCAG+TGG + chr4_3:22726515-22726534 None:intergenic 50.0%
AACAATCAGCTGCTGACGCT+TGG - chr4_3:22726953-22726972 Msa0634900:intron 50.0%
ACAATCAGCTGCTGACGCTT+GGG - chr4_3:22726954-22726973 Msa0634900:intron 50.0%
CCCAGGTATGAACCTATGTC+AGG + chr4_3:22727438-22727457 None:intergenic 50.0%
CATAGGTTCATACCTGGGCA+AGG - chr4_3:22727440-22727459 Msa0634900:intron 50.0%
TTTCCCCTTGCGGTTGGATT+TGG - chr4_3:22727468-22727487 Msa0634900:intron 50.0%
TGAAAACTCCAGAGGACGAG+GGG + chr4_3:22727668-22727687 None:intergenic 50.0%
CTAGACCCAGTAGAGACTAG+AGG - chr4_3:22727847-22727866 Msa0634900:intron 50.0%
GGTTGCCTCTAGTCTCTACT+GGG + chr4_3:22727855-22727874 None:intergenic 50.0%
AGGCAGGTCTATGATCGGAT+TGG - chr4_3:22727894-22727913 Msa0634900:intron 50.0%
GGCAGGTCTATGATCGGATT+GGG - chr4_3:22727895-22727914 Msa0634900:intron 50.0%
GCAGGTCTATGATCGGATTG+GGG - chr4_3:22727896-22727915 Msa0634900:intron 50.0%
TGTTGGAACTCAAGTGCGAG+TGG - chr4_3:22728079-22728098 Msa0634900:CDS 50.0%
TGCGAGTGGTGGTTAGAAGT+TGG - chr4_3:22728093-22728112 Msa0634900:CDS 50.0%
GCAAAGGGCTCAAACGAAGC+AGG + chr4_3:22723494-22723513 None:intergenic 55.0%
AGTTGGTTGGGGATGCTTCC+AGG - chr4_3:22724087-22724106 Msa0634900:intron 55.0%
TGGGGATGCTTCCAGGAACA+TGG - chr4_3:22724094-22724113 Msa0634900:intron 55.0%
GGGGATGCTTCCAGGAACAT+GGG - chr4_3:22724095-22724114 Msa0634900:intron 55.0%
GTGGGCAATTGTCACCGTAC+AGG - chr4_3:22724696-22724715 Msa0634900:intron 55.0%
GCAATTGTCACCGTACAGGC+CGG - chr4_3:22724700-22724719 Msa0634900:intron 55.0%
TGGGGTGGTCCAATGGATCT+TGG + chr4_3:22724773-22724792 None:intergenic 55.0%
! CATCTAGAGTGTGACTGGGG+TGG + chr4_3:22724788-22724807 None:intergenic 55.0%
GATGTCAAACCCGGTGGTGA+TGG - chr4_3:22724804-22724823 Msa0634900:intron 55.0%
AACACACACCCATCACCACC+GGG + chr4_3:22724816-22724835 None:intergenic 55.0%
CAACACACACCCATCACCAC+CGG + chr4_3:22724817-22724836 None:intergenic 55.0%
GGACGTCATCACCCATAGAC+AGG + chr4_3:22724987-22725006 None:intergenic 55.0%
! TATGGGTGATGACGTCCCTC+TGG - chr4_3:22724990-22725009 Msa0634900:intron 55.0%
!! TGATGACGTCCCTCTGGAGT+AGG - chr4_3:22724996-22725015 Msa0634900:intron 55.0%
CGTCACTGTCCTACTCCAGA+GGG + chr4_3:22725008-22725027 None:intergenic 55.0%
ACGTCACTGTCCTACTCCAG+AGG + chr4_3:22725009-22725028 None:intergenic 55.0%
TCATGTGCCCCTCTGACCTT+TGG + chr4_3:22725185-22725204 None:intergenic 55.0%
! GGATGTGTCACTGCCGAAAG+AGG - chr4_3:22725249-22725268 Msa0634900:CDS 55.0%
TTCCACGTGCTCTTGCACAC+TGG - chr4_3:22725274-22725293 Msa0634900:CDS 55.0%
CAAGGCTGAACTTCGGGAAC+TGG + chr4_3:22726215-22726234 None:intergenic 55.0%
!! GAGTGCTGAGTTGACAAGGG+AGG - chr4_3:22726367-22726386 Msa0634900:CDS 55.0%
GGGAGGGAGAGAAGTGACAT+TGG - chr4_3:22726384-22726403 Msa0634900:intron 55.0%
GGGAGAGAAGTGACATTGGC+TGG - chr4_3:22726388-22726407 Msa0634900:intron 55.0%
! TTATGAGGGAGCCACTGGCT+TGG - chr4_3:22726501-22726520 Msa0634900:intron 55.0%
!! TATGAGGGAGCCACTGGCTT+GGG - chr4_3:22726502-22726521 Msa0634900:intron 55.0%
CAAGGCCAAGTTTCCCCTTG+CGG - chr4_3:22727458-22727477 Msa0634900:intron 55.0%
TCCAACCGCAAGGGGAAACT+TGG + chr4_3:22727466-22727485 None:intergenic 55.0%
GAAAACTCCAGAGGACGAGG+GGG + chr4_3:22727667-22727686 None:intergenic 55.0%
CGGTTGCCTCTAGTCTCTAC+TGG + chr4_3:22727856-22727875 None:intergenic 55.0%
TGGAACTCAAGTGCGAGTGG+TGG - chr4_3:22728082-22728101 Msa0634900:CDS 55.0%
CGGAGAAGAGGATGTTGCGC+TGG - chr4_3:22721270-22721289 Msa0634900:CDS 60.0%
GTGTGACTGGGGTGGTCCAA+TGG + chr4_3:22724780-22724799 None:intergenic 60.0%
! GTCCAGTGTGCAAGAGCACG+TGG + chr4_3:22725279-22725298 None:intergenic 60.0%
AAGCGCCACAGCAGCGACTT+TGG + chr4_3:22725686-22725705 None:intergenic 60.0%
ATGGCAACACCCCCTGCACT+TGG + chr4_3:22726031-22726050 None:intergenic 60.0%
!! AAGTGCAGGGGGTGTTGCCA+TGG - chr4_3:22726030-22726049 Msa0634900:intron 60.0%
!! AGTGCAGGGGGTGTTGCCAT+GGG - chr4_3:22726031-22726050 Msa0634900:intron 60.0%
GCCAAGTTTCCCCTTGCGGT+TGG - chr4_3:22727462-22727481 Msa0634900:intron 60.0%
!! GGGGTGTTGCCATGGGTAGC+TGG - chr4_3:22726038-22726057 Msa0634900:intron 65.0%
TCAGCTGCTGACGCTTGGGC+TGG - chr4_3:22726958-22726977 Msa0634900:intron 65.0%
CAGCTGCTGACGCTTGGGCT+GGG - chr4_3:22726959-22726978 Msa0634900:intron 65.0%
! GACGCTTGGGCTGGGACTCT+TGG - chr4_3:22726967-22726986 Msa0634900:intron 65.0%
!! GGGGAAACTTGGCCTTGCCC+AGG + chr4_3:22727455-22727474 None:intergenic 65.0%
CCAGAGGACGAGGGGGTTGT+GGG + chr4_3:22727660-22727679 None:intergenic 65.0%
TCCAGAGGACGAGGGGGTTG+TGG + chr4_3:22727661-22727680 None:intergenic 65.0%
CCCACAACCCCCTCGTCCTC+TGG - chr4_3:22727657-22727676 Msa0634900:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 22720224 22728533 22720224 ID=Msa0634900;Name=Msa0634900
chr4_3 mRNA 22720224 22728533 22720224 ID=Msa0634900-mRNA-1;Parent=Msa0634900;Name=Msa0634900-mRNA-1;_AED=0.13;_eAED=0.13;_QI=135|0.75|0.88|0.88|0.87|0.66|9|657|366
chr4_3 exon 22720224 22720380 22720224 ID=Msa0634900-mRNA-1:exon:5911;Parent=Msa0634900-mRNA-1
chr4_3 exon 22720407 22720933 22720407 ID=Msa0634900-mRNA-1:exon:5910;Parent=Msa0634900-mRNA-1
chr4_3 exon 22721248 22721346 22721248 ID=Msa0634900-mRNA-1:exon:5909;Parent=Msa0634900-mRNA-1
chr4_3 exon 22721727 22721837 22721727 ID=Msa0634900-mRNA-1:exon:5908;Parent=Msa0634900-mRNA-1
chr4_3 exon 22724602 22724668 22724602 ID=Msa0634900-mRNA-1:exon:5907;Parent=Msa0634900-mRNA-1
chr4_3 exon 22725174 22725397 22725174 ID=Msa0634900-mRNA-1:exon:5906;Parent=Msa0634900-mRNA-1
chr4_3 exon 22726055 22726147 22726055 ID=Msa0634900-mRNA-1:exon:5905;Parent=Msa0634900-mRNA-1
chr4_3 exon 22726343 22726395 22726343 ID=Msa0634900-mRNA-1:exon:5904;Parent=Msa0634900-mRNA-1
chr4_3 exon 22727972 22728533 22727972 ID=Msa0634900-mRNA-1:exon:5903;Parent=Msa0634900-mRNA-1
chr4_3 five_prime_UTR 22728399 22728533 22728399 ID=Msa0634900-mRNA-1:five_prime_utr;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22727972 22728398 22727972 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22726343 22726395 22726343 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22726055 22726147 22726055 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22725174 22725397 22725174 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22724602 22724668 22724602 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22721727 22721837 22721727 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22721248 22721346 22721248 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 CDS 22720907 22720933 22720907 ID=Msa0634900-mRNA-1:cds;Parent=Msa0634900-mRNA-1
chr4_3 three_prime_UTR 22720407 22720906 22720407 ID=Msa0634900-mRNA-1:three_prime_utr;Parent=Msa0634900-mRNA-1
chr4_3 three_prime_UTR 22720224 22720380 22720224 ID=Msa0634900-mRNA-1:three_prime_utr;Parent=Msa0634900-mRNA-1
Gene Sequence

>Msa0634900

ATGCGCACTCTTTCATTTCCACCACCATGTCTATCATCTTCTTCATATTCTCTTCACACCAATAATAATAATCGATTATCAACTACTTTTTCTTCTTACAAATGTTTTCATTTCTTAACACCACATTCATCACTCAAACAAACCAAAAAACAACCCAGTAGAATCAATAACACTGACCCATCTCGGTTAAAACGTTTGTTTAATCCCAAAAGTGAAAATGATAATGATGATGATGATGATAAGAATAAGAAGAAGAAAAGAGGTGAATCTGAGAAAGAGGAGGAAGAGGATGATGGTGCTGCTTTGAAGGGTACCCTTTTGGCTGGTGTTTTGCTTGTTGGTTTTGTTGGTGGTTTTGCTTCTGTTGGGTATATTTACAGAGAGCCTATTAATACTTTCTTGAATCAATTCTCTGGCTTCATTGAAGGTTATGGTTCAGCTGGATATGCATTGTTTGTAGCTGTTTATGCTGGATTGGAGATCCTTGCAATTCCTGCCATTCCCTTAACCATGTCAGCCGGACTTCTTTTTGGATCCCTTACCGGCACCATCATAGTCTCTATCAGTGGAACAGTGGCGGCTAGTGTTGCTTTTCTAATTGCAAGATATTTTGCTCGTGAGCGTATTCTAAAATTAGTGGAAGGGAATAAGAAGTTTCTTGCTATTGACAAAGCAATTGGAGAAAATGGCTTCAAGGTTGTTACCCTGCTTCGTTTGAGCCCTTTGCTGCCATTTTCTTTGGGGAATTATTTATATGGGTTGACATCTGTTAAGTTTCTTCCGTATGTACTGGGAAGTTGGTTGGGGATGCTTCCAGGAACATGGGCTTATGTTAGTGCTGGTGCTTTTGGAAGAGCAATAATACAAGAAGAATCTGAACTTAGTTCACTTGGAGGAAACAATCAGCTGCTGACGCTTGGGCTGGGACTCTTGGCCACTGCATTAGCTGCTACATATGTCACAAAGCTTGCAAAGACAATGGAAATGCGCCTTTATAGTCCTGACATAGGTTCATACCTGGGCAAGGCCAAGTTTCCCCTTGCGGTTGGATTTGGATTTCCTGCATTGTTGGCTGACGCTGTCAAAGACATCGACGACTAG

Protein sequence

>Msa0634900

MRTLSFPPPCLSSSSYSLHTNNNNRLSTTFSSYKCFHFLTPHSSLKQTKKQPSRINNTDPSRLKRLFNPKSENDNDDDDDKNKKKKRGESEKEEEEDDGAALKGTLLAGVLLVGFVGGFASVGYIYREPINTFLNQFSGFIEGYGSAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSLTGTIIVSISGTVAASVAFLIARYFARERILKLVEGNKKFLAIDKAIGENGFKVVTLLRLSPLLPFSLGNYLYGLTSVKFLPYVLGSWLGMLPGTWAYVSAGAFGRAIIQEESELSSLGGNNQLLTLGLGLLATALAATYVTKLAKTMEMRLYSPDIGSYLGKAKFPLAVGFGFPALLADAVKDIDD*