AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0127060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127060 MtrunA17_Chr1g0186021 85.149 505 45 4 1 476 1 504 0.0 846
Msa0127060 MtrunA17_Chr1g0173891 36.890 328 186 5 129 439 1 324 5.52e-63 209
Msa0127060 MtrunA17_Chr8g0380251 35.795 352 201 6 106 439 98 442 9.42e-60 203
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0127060 AT4G17740.1 76.276 392 77 2 99 476 126 515 0.0 617
Msa0127060 AT4G17740.2 76.276 392 77 2 99 476 116 505 0.0 617
Msa0127060 AT3G57680.1 37.183 355 196 7 107 439 121 470 3.46e-69 229
Msa0127060 AT3G57680.3 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0127060 AT3G57680.2 38.006 321 173 6 140 439 6 321 6.39e-62 206
Msa0127060 AT5G46390.2 35.593 354 193 8 109 439 125 466 4.41e-53 186
Msa0127060 AT5G46390.1 31.760 233 138 7 109 332 125 345 2.25e-25 108

Find 124 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAAAACAAAATTATTT+TGG 0.166886 1_3:-56271002 Msa0127060:three_prime_UTR
GGAAGAGAATCTCCTCTTTC+TGG 0.228002 1_3:-56276738 Msa0127060:CDS
ACAACTTACGAGATGCATTT+TGG 0.229630 1_3:+56273910 None:intergenic
TTCTGGCAGGTTTATTTGTT+TGG 0.248338 1_3:+56270865 None:intergenic
TAATGTAAATGCATTTGTTT+TGG 0.265017 1_3:-56273005 Msa0127060:CDS
AAACAAACGTTGTTTACTTT+TGG 0.274441 1_3:+56277796 None:intergenic
CTGTTTGTGCGGTTGGTTGC+TGG 0.295497 1_3:-56277700 Msa0127060:CDS
TGTCTCTTCACGGTTGTTCA+TGG 0.323178 1_3:+56276622 None:intergenic
TTCTTTACTGTTTGTGCGGT+TGG 0.354326 1_3:-56277707 Msa0127060:CDS
ATTGTGAACAATCCCCATTC+TGG 0.356722 1_3:+56270848 None:intergenic
TAGTGAGTGGTTTGAGGCAG+AGG 0.361449 1_3:-56278088 Msa0127060:five_prime_UTR
GGAACTAAAGGCGCTCTAAC+TGG 0.372863 1_3:-56275362 Msa0127060:CDS
ACAAATAAACCTGCCAGAAT+GGG 0.376363 1_3:-56270861 Msa0127060:three_prime_UTR
CAAAATGCATCTTCATCCTT+AGG 0.378658 1_3:+56271128 None:intergenic
TGTTGGCTCTCCGTACAATA+TGG 0.382476 1_3:+56271458 None:intergenic
AACAAATAAACCTGCCAGAA+TGG 0.385953 1_3:-56270862 Msa0127060:three_prime_UTR
TTAATGGACAGAGTTGGTTT+AGG 0.396696 1_3:-56276673 Msa0127060:CDS
TCGTGGGGTTCGAGATATAC+TGG 0.396807 1_3:-56272461 Msa0127060:CDS
TCCTTCGCAGAAGGAGGAAA+TGG 0.400373 1_3:-56277756 Msa0127060:CDS
TTATGCTGCAGGTTTCAAAC+TGG 0.418269 1_3:-56277906 Msa0127060:intron
ATCGGATGGCATGTCTGCTT+TGG 0.427225 1_3:+56275313 None:intergenic
GCTCTATATGCAGGACCTCC+TGG 0.429225 1_3:+56275266 None:intergenic
TTGTACGGAGAGCCAACATT+TGG 0.429603 1_3:-56271453 Msa0127060:CDS
TTCTGAACCTCTGGCTGTGC+TGG 0.435964 1_3:-56272410 Msa0127060:intron
CTGAGAGCTCAAATACTGAT+TGG 0.437609 1_3:+56271338 None:intergenic
GATGTTGGTAGAGGATGGTC+AGG 0.439793 1_3:+56271155 None:intergenic
TTCTGTGCTCATATCATCAA+TGG 0.441209 1_3:+56275214 None:intergenic
GTTGTCATTTCAGCTTCTCC+AGG 0.446510 1_3:-56275284 Msa0127060:CDS
CCTAGCAACTTCTGAACCTC+TGG 0.447872 1_3:-56272419 Msa0127060:CDS
ACTGGAGTGGGGATATCAAT+AGG 0.449955 1_3:-56275344 Msa0127060:CDS
ATTTACCCCTTTCCAAATGT+TGG 0.453291 1_3:+56271441 None:intergenic
AGAGGAGATTCTCTTCCGTC+AGG 0.456230 1_3:+56276744 None:intergenic
TTGCACAGTCTTGACTTCAC+TGG 0.459820 1_3:+56273993 None:intergenic
TGATATGAGCACAGAAAAGT+TGG 0.461597 1_3:-56275207 Msa0127060:CDS
GTCTCTTCACGGTTGTTCAT+GGG 0.462782 1_3:+56276623 None:intergenic
CTCAAACTTCTGAACTTCTC+AGG 0.466160 1_3:+56275497 None:intergenic
CCAGAGGTTCAGAAGTTGCT+AGG 0.467344 1_3:+56272419 None:intergenic
AAGAAGCAATCAATACGTTC+AGG 0.477783 1_3:-56273033 Msa0127060:CDS
TTCTCCACGCCTCCAGAAAG+AGG 0.478035 1_3:+56276726 None:intergenic
GGGGAATTATTTCCTGCAGC+AGG 0.481562 1_3:+56273966 None:intergenic
TGCTCATATCATCAATGGCC+AGG 0.482743 1_3:+56275219 None:intergenic
TGAGAAGTTCAGAAGTTTGA+GGG 0.485226 1_3:-56275495 Msa0127060:intron
TGTATATTTGTGATAGTCGT+GGG 0.489052 1_3:-56272477 Msa0127060:CDS
CATATGTATCCAGAGGTTTG+TGG 0.494939 1_3:+56270949 None:intergenic
GATGGCATGTCTGCTTTGGT+AGG 0.496814 1_3:+56275317 None:intergenic
AAGTCATACATGTCTCTTCA+CGG 0.503051 1_3:+56276612 None:intergenic
AAGAAAGATGCTTGCCACAT+TGG 0.503483 1_3:-56275546 Msa0127060:CDS
CTTGTTATCTTTCAATGCAC+CGG 0.503714 1_3:+56271485 None:intergenic
TGAACAATCCCCATTCTGGC+AGG 0.504596 1_3:+56270852 None:intergenic
GTTCTGCCTTCACTCTTCCA+TGG 0.505286 1_3:-56278059 Msa0127060:exon
ACAATGTTGCCACAAACCTC+TGG 0.505687 1_3:-56270958 Msa0127060:three_prime_UTR
TGAGTGGTTTGAGGCAGAGG+TGG 0.512701 1_3:-56278085 Msa0127060:five_prime_UTR
TTTGTCTGGAGATGTTATCC+TGG 0.515590 1_3:-56275237 Msa0127060:CDS
GGAAATTACAGAGGACCTGA+TGG 0.515701 1_3:-56274408 Msa0127060:intron
CTGTGCAAGTTACCTGCTGC+AGG 0.516744 1_3:-56273978 Msa0127060:CDS
ACAAGATAGTGAGTGGTTTG+AGG 0.519579 1_3:-56278094 Msa0127060:five_prime_UTR
TGGAGTTATGTTGGTTGTGT+CGG 0.520837 1_3:-56277680 Msa0127060:intron
AAAGGCGCTCTAACTGGAGT+GGG 0.521920 1_3:-56275356 Msa0127060:CDS
GGAAATAATTCCCCAACAGT+TGG 0.525940 1_3:-56273957 Msa0127060:CDS
GTTGGTTGCTGGAGTTATGT+TGG 0.526117 1_3:-56277689 Msa0127060:CDS
CAGAGGTTCAGAAGTTGCTA+GGG 0.526166 1_3:+56272420 None:intergenic
TGGTTTGAGGCAGAGGTGGT+AGG 0.527360 1_3:-56278081 Msa0127060:five_prime_UTR
AATGCAACAGAGCTTCCATC+AGG 0.527673 1_3:+56274393 None:intergenic
GTCCCTTGAAGGGGCCCTGA+CGG 0.534821 1_3:-56276759 Msa0127060:intron
CTGAGAAGTTCAGAAGTTTG+AGG 0.536007 1_3:-56275496 Msa0127060:CDS
TTATTATTACACGAAGAAGC+AGG 0.538054 1_3:+56271089 None:intergenic
GTGTATATTTGTGATAGTCG+TGG 0.539212 1_3:-56272478 Msa0127060:CDS
GGAGAGCCAACATTTGGAAA+GGG 0.540966 1_3:-56271447 Msa0127060:CDS
TGAAAACCTTGATTCTACTA+CGG 0.541823 1_3:+56277873 None:intergenic
ATCTCCTCTTTCTGGAGGCG+TGG 0.545789 1_3:-56276730 Msa0127060:CDS
TGAAGGCAGTCTGGAACTAA+AGG 0.547910 1_3:-56275374 Msa0127060:intron
GTTGGAGTTTCCTTCGCAGA+AGG 0.548560 1_3:-56277765 Msa0127060:CDS
TTTGAGCTCTCAGATGGCTC+AGG 0.548752 1_3:-56271328 Msa0127060:CDS
ACGAAGAAGCAGGATCCTGC+AGG 0.552016 1_3:+56271099 None:intergenic
AGAGCTAGCAATGATCTCCA+TGG 0.553066 1_3:+56278042 None:intergenic
GAAATGATGTTGGTAGAGGA+TGG 0.553668 1_3:+56271150 None:intergenic
GGGTAACGAAGAGGGAAAGA+AGG 0.553709 1_3:+56278010 None:intergenic
TTAGGAAATGATGTTGGTAG+AGG 0.554141 1_3:+56271146 None:intergenic
TCCATTTCCTCCTTCTGCGA+AGG 0.555474 1_3:+56277755 None:intergenic
GTCATTTCAGCTTCTCCAGG+AGG 0.556960 1_3:-56275281 Msa0127060:CDS
AACAAGCGGGCCATATTGTA+CGG 0.558030 1_3:-56271468 Msa0127060:CDS
CGGAGAGCCAACATTTGGAA+AGG 0.566039 1_3:-56271448 Msa0127060:CDS
AATTCTTGTCGATATATGCT+CGG 0.570307 1_3:+56276696 None:intergenic
GGAGGTCCTGCATATAGAGC+TGG 0.574441 1_3:-56275263 Msa0127060:CDS
TACGTCAGAACCACTACGTA+TGG 0.575100 1_3:+56274368 None:intergenic
GGAGTTTCCTTCGCAGAAGG+AGG 0.575657 1_3:-56277762 Msa0127060:CDS
TCTACCAACATCATTTCCTA+AGG 0.576557 1_3:-56271144 Msa0127060:CDS
AAAACACCAGCTCTATATGC+AGG 0.578644 1_3:+56275257 None:intergenic
TCAGTATTTGAGCTCTCAGA+TGG 0.579199 1_3:-56271334 Msa0127060:CDS
TGAGCCTAATCAGGTAAACA+AGG 0.584513 1_3:-56271535 Msa0127060:intron
ATGGCATGTCTGCTTTGGTA+GGG 0.587538 1_3:+56275318 None:intergenic
CAGAAGGAGGAAATGGAACA+AGG 0.588765 1_3:-56277749 Msa0127060:CDS
AGTGCCAGCGAAATATTAGC+CGG 0.591253 1_3:-56271504 Msa0127060:CDS
TGCACCGGCTAATATTTCGC+TGG 0.596104 1_3:+56271500 None:intergenic
GATATGAGCACAGAAAAGTT+GGG 0.598281 1_3:-56275206 Msa0127060:CDS
CAAATAAACCTGCCAGAATG+GGG 0.598520 1_3:-56270860 Msa0127060:three_prime_UTR
GAGGAGATTCTCTTCCGTCA+GGG 0.599213 1_3:+56276745 None:intergenic
TGCATTGAAAGATAACAAGC+GGG 0.604470 1_3:-56271481 Msa0127060:CDS
CGAGATATACTGGATACAGA+TGG 0.605141 1_3:-56272451 Msa0127060:CDS
TCATCCTTAGGAAATGATGT+TGG 0.609434 1_3:+56271140 None:intergenic
TAAAGGCGCTCTAACTGGAG+TGG 0.610725 1_3:-56275357 Msa0127060:CDS
GTGCATTGAAAGATAACAAG+CGG 0.614192 1_3:-56271482 Msa0127060:CDS
ATGCTTCTTTACTGTTTGTG+CGG 0.614941 1_3:-56277711 Msa0127060:CDS
TACCAACTTACGTTAGAGCT+AGG 0.615400 1_3:+56274340 None:intergenic
AAAGCAGACATGCCATCCGA+TGG 0.615475 1_3:-56275311 Msa0127060:CDS
TGAAATGACAACAAGTCCAT+CGG 0.616320 1_3:+56275295 None:intergenic
TCCCGAAAATTGAACTAACT+AGG 0.617585 1_3:-56270898 Msa0127060:three_prime_UTR
AGATTGTTGGGTAACGAAGA+GGG 0.618034 1_3:+56278002 None:intergenic
TGATCTCCATGGAAGAGTGA+AGG 0.622114 1_3:+56278053 None:intergenic
TTGTCAATATCTGTGTGCGC+AGG 0.623787 1_3:+56271274 None:intergenic
AAAAGAAACAAGATAGTGAG+TGG 0.624117 1_3:-56278101 Msa0127060:five_prime_UTR
AGAGAATCTCCTCTTTCTGG+AGG 0.626964 1_3:-56276735 Msa0127060:CDS
GAGATTGTTGGGTAACGAAG+AGG 0.630735 1_3:+56278001 None:intergenic
GAGAGCCAACATTTGGAAAG+GGG 0.642449 1_3:-56271446 Msa0127060:intron
TAAATCACCTATTATCTCTG+AGG 0.651600 1_3:+56272981 None:intergenic
ATGACAACAAGTCCATCGGA+TGG 0.653408 1_3:+56275299 None:intergenic
AAAATTACCAGCACAGCCAG+AGG 0.668041 1_3:+56272403 None:intergenic
GAGCCTAATCAGGTAAACAA+GGG 0.673106 1_3:-56271534 Msa0127060:intron
GTTGCATTGACCATACGTAG+TGG 0.683901 1_3:-56274378 Msa0127060:CDS
CTATCAATTAGGTTGGACAA+AGG 0.690063 1_3:-56272508 Msa0127060:intron
AAGGCGCTCTAACTGGAGTG+GGG 0.697650 1_3:-56275355 Msa0127060:CDS
GTATATTTGTGATAGTCGTG+GGG 0.714608 1_3:-56272476 Msa0127060:CDS
TGCGCACACAGATATTGACA+AGG 0.734805 1_3:-56271272 Msa0127060:intron
AGTGAAGGGATCATCCAATG+TGG 0.753176 1_3:+56275532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAAATTAAATAAAAT+AGG + chr1_3:56270890-56270909 None:intergenic 0.0%
!!! TGAATGTTTTTAAATTTTTA+TGG - chr1_3:56275368-56275387 Msa0127060:CDS 10.0%
!! AAAAAATACAAAAAATTAGT+TGG - chr1_3:56275706-56275725 Msa0127060:intron 10.0%
!! TAAAAACAAGAAAAAAAATA+AGG + chr1_3:56276457-56276476 None:intergenic 10.0%
!!! TATTTTCAAAATGATTTTTT+TGG - chr1_3:56277976-56277995 Msa0127060:intron 10.0%
!!! ATTTTCAAAATGATTTTTTT+GGG - chr1_3:56277977-56277996 Msa0127060:intron 10.0%
!!! TTAACAAAACAAAATTATTT+TGG - chr1_3:56278023-56278042 Msa0127060:CDS 10.0%
!!! ATAAATATTGTTATTTTACG+CGG + chr1_3:56271103-56271122 None:intergenic 15.0%
!!! AAAGTTACTAAATTTTCAAT+TGG - chr1_3:56271199-56271218 Msa0127060:intron 15.0%
!!! AAGTTACTAAATTTTCAATT+GGG - chr1_3:56271200-56271219 Msa0127060:intron 15.0%
!!! AAAGTATTAACTATTGAATA+TGG - chr1_3:56272081-56272100 Msa0127060:intron 15.0%
!!! ACTCTTTATTTTCTTATTAA+TGG - chr1_3:56272117-56272136 Msa0127060:intron 15.0%
!! TTAAACTTTAAGTATCAAAA+TGG - chr1_3:56273264-56273283 Msa0127060:intron 15.0%
!!! TTCAACAAAATTTTAGTTTT+TGG + chr1_3:56273635-56273654 None:intergenic 15.0%
!!! AAAAACTAAAATTTTGTTGA+AGG - chr1_3:56273634-56273653 Msa0127060:intron 15.0%
!! TGATAACTTGATATAAATAT+TGG - chr1_3:56274047-56274066 Msa0127060:intron 15.0%
!!! ATAAAATTTGGTCTTTTAAA+TGG + chr1_3:56274542-56274561 None:intergenic 15.0%
!!! ATTTTCTTTGTAAAAGAAAA+AGG + chr1_3:56274914-56274933 None:intergenic 15.0%
!!! TCTTTAAAATATTCATTAAC+TGG + chr1_3:56275340-56275359 None:intergenic 15.0%
!!! AATTTTTTATCTTATCATTC+CGG - chr1_3:56276253-56276272 Msa0127060:intron 15.0%
!! AGAAATTAAATAATTGTAAC+CGG + chr1_3:56276275-56276294 None:intergenic 15.0%
!! AATCAATTTAATTGTGATTA+TGG - chr1_3:56277324-56277343 Msa0127060:intron 15.0%
!! ATCAATTTAATTGTGATTAT+GGG - chr1_3:56277325-56277344 Msa0127060:intron 15.0%
!! GTGTAATAATAATAATAACA+GGG - chr1_3:56277947-56277966 Msa0127060:intron 15.0%
!!! AAAATCATTTTGAAAATAAC+TGG + chr1_3:56277974-56277993 None:intergenic 15.0%
!!! AGTTACTAAATTTTCAATTG+GGG - chr1_3:56271201-56271220 Msa0127060:intron 20.0%
!! TCTTTATAATGAATTTGTGT+TGG - chr1_3:56271422-56271441 Msa0127060:intron 20.0%
!! CTGAATATTCAATACTAAAA+TGG - chr1_3:56271960-56271979 Msa0127060:intron 20.0%
!!! TATTTTCTTATTAATGGTTG+AGG - chr1_3:56272123-56272142 Msa0127060:intron 20.0%
!!! TATATCGACAAGAATTTTAA+TGG - chr1_3:56272336-56272355 Msa0127060:intron 20.0%
!!! GTTGATAAAAAAAAAGTAAG+AGG + chr1_3:56272449-56272468 None:intergenic 20.0%
!! TAAAATGGTTTAACTGAAAT+CGG - chr1_3:56272609-56272628 Msa0127060:intron 20.0%
!! TTATCATTGTTAATTATGAG+AGG - chr1_3:56273117-56273136 Msa0127060:intron 20.0%
!! CTATATGTGAAATAAACTAA+GGG + chr1_3:56273582-56273601 None:intergenic 20.0%
!! ACTATATGTGAAATAAACTA+AGG + chr1_3:56273583-56273602 None:intergenic 20.0%
!! AAAAGAGACTTAGAATTAAA+TGG - chr1_3:56274317-56274336 Msa0127060:intron 20.0%
!! AATGGTCTATCTATTATATA+TGG - chr1_3:56274335-56274354 Msa0127060:intron 20.0%
!!! GAAAAAGGTATCAATTAATT+AGG + chr1_3:56274899-56274918 None:intergenic 20.0%
!!! ATTTTATATAACCAACTGTT+GGG + chr1_3:56275082-56275101 None:intergenic 20.0%
!!! AATTTTATATAACCAACTGT+TGG + chr1_3:56275083-56275102 None:intergenic 20.0%
!! TTCTATGTACTAACTAAAAA+AGG - chr1_3:56275168-56275187 Msa0127060:intron 20.0%
!! TCTATGTACTAACTAAAAAA+GGG - chr1_3:56275169-56275188 Msa0127060:intron 20.0%
!! ATTATAGCAAGTAAGAATTA+TGG + chr1_3:56275262-56275281 None:intergenic 20.0%
!!! GATTGTTTCTCTTTATATTT+AGG - chr1_3:56275479-56275498 Msa0127060:intron 20.0%
!! TGAAAAGTAAAATGTGATAT+TGG + chr1_3:56275575-56275594 None:intergenic 20.0%
!!! TAATGTAAATGCATTTGTTT+TGG - chr1_3:56276020-56276039 Msa0127060:intron 20.0%
!! ATCTATTTCAAAATGGTAAA+AGG + chr1_3:56276367-56276386 None:intergenic 20.0%
!! ATGAGAAAATATGTTATCTA+CGG + chr1_3:56276963-56276982 None:intergenic 20.0%
!!! ATATTTTCTCATCTAATTCA+TGG - chr1_3:56276971-56276990 Msa0127060:intron 20.0%
!! CCAAATATACAAAGTATAAA+CGG + chr1_3:56277022-56277041 None:intergenic 20.0%
!!! ATCACAATTAAATTGATTCA+TGG + chr1_3:56277322-56277341 None:intergenic 20.0%
!! TCAATTTAATTGTGATTATG+GGG - chr1_3:56277326-56277345 Msa0127060:intron 20.0%
!! CGTGTAATAATAATAATAAC+AGG - chr1_3:56277946-56277965 Msa0127060:intron 20.0%
! ATAATCAGAATGATGAAGAA+GGG + chr1_3:56271077-56271096 None:intergenic 25.0%
! AATAATCAGAATGATGAAGA+AGG + chr1_3:56271078-56271097 None:intergenic 25.0%
! AATAACAATATTTATGCTGC+AGG - chr1_3:56271108-56271127 Msa0127060:CDS 25.0%
!! AAACAAACGTTGTTTACTTT+TGG + chr1_3:56271232-56271251 None:intergenic 25.0%
! AGAGATAAAACTTACAAGAA+GGG + chr1_3:56271390-56271409 None:intergenic 25.0%
! TAGAGATAAAACTTACAAGA+AGG + chr1_3:56271391-56271410 None:intergenic 25.0%
! AATGAATTTGTGTTGGAATT+TGG - chr1_3:56271429-56271448 Msa0127060:intron 25.0%
! ATGAATTTGTGTTGGAATTT+GGG - chr1_3:56271430-56271449 Msa0127060:intron 25.0%
! TCAGAATGAATTACAAAGAT+AGG + chr1_3:56271944-56271963 None:intergenic 25.0%
! CAAGAGTAAGAGATAAATTT+CGG + chr1_3:56272009-56272028 None:intergenic 25.0%
! ATATAGTACTAGGTAGATTT+GGG + chr1_3:56272166-56272185 None:intergenic 25.0%
! TATATAGTACTAGGTAGATT+TGG + chr1_3:56272167-56272186 None:intergenic 25.0%
!! GCTGAACAAAAACAATTTTA+TGG - chr1_3:56272471-56272490 Msa0127060:CDS 25.0%
! TTAACTATATCAGATAGTTC+TGG + chr1_3:56272718-56272737 None:intergenic 25.0%
! TATCTGATATAGTTAAATGC+TGG - chr1_3:56272722-56272741 Msa0127060:intron 25.0%
! TAATCTACAACAAATTGCTT+TGG - chr1_3:56272760-56272779 Msa0127060:intron 25.0%
! TCAAATTTGTGAAGATAAGT+AGG - chr1_3:56272833-56272852 Msa0127060:intron 25.0%
!!! CAGGAAAGTTTTTTTTAAGT+AGG - chr1_3:56273377-56273396 Msa0127060:intron 25.0%
! TAGTAATACTTTCAACTTGT+TGG + chr1_3:56274018-56274037 None:intergenic 25.0%
! TTCCATTGTTGTAGATAAAA+AGG - chr1_3:56274207-56274226 Msa0127060:intron 25.0%
!! TACCTTTTTATCTACAACAA+TGG + chr1_3:56274212-56274231 None:intergenic 25.0%
!! CTAAGTCTCTTTTCATAATT+CGG + chr1_3:56274310-56274329 None:intergenic 25.0%
!! TATTGACTACATGGATTTAA+CGG + chr1_3:56274383-56274402 None:intergenic 25.0%
! GTAATTAAGAACCTCATAAA+TGG + chr1_3:56274499-56274518 None:intergenic 25.0%
!! ATGAGAAGTGCAATAAAATT+TGG + chr1_3:56274554-56274573 None:intergenic 25.0%
! TATTATTACCATTACTTGAG+AGG - chr1_3:56274873-56274892 Msa0127060:intron 25.0%
!! TTTTATATAACCAACTGTTG+GGG + chr1_3:56275081-56275100 None:intergenic 25.0%
! ATCACATGATTAATGCATAT+TGG + chr1_3:56275207-56275226 None:intergenic 25.0%
!!! ATGTATTGATGCCTTTTTTT+TGG - chr1_3:56275606-56275625 Msa0127060:intron 25.0%
! AACACTATTCACCAAAAAAA+AGG + chr1_3:56275620-56275639 None:intergenic 25.0%
! GAGGAATAGAAAATTGTTAT+CGG + chr1_3:56275672-56275691 None:intergenic 25.0%
! TATTAAATTCGGTCATTAGT+TGG - chr1_3:56275832-56275851 Msa0127060:intron 25.0%
!! TAGTGATTGAAAGTATATAG+AGG + chr1_3:56276084-56276103 None:intergenic 25.0%
!! ATTATTTAATTTCTGCAGCA+TGG - chr1_3:56276281-56276300 Msa0127060:intron 25.0%
! CAATGCAATCTATTTCAAAA+TGG + chr1_3:56276374-56276393 None:intergenic 25.0%
! AATAGATTGCATTGCAAAAT+TGG - chr1_3:56276380-56276399 Msa0127060:intron 25.0%
! ATAGATTGCATTGCAAAATT+GGG - chr1_3:56276381-56276400 Msa0127060:intron 25.0%
! GAAAAAAAATAAGGTATGAC+TGG + chr1_3:56276448-56276467 None:intergenic 25.0%
! TCTAACAGATACTATCAATT+AGG - chr1_3:56276506-56276525 Msa0127060:intron 25.0%
! CCGTTTATACTTTGTATATT+TGG - chr1_3:56277019-56277038 Msa0127060:intron 25.0%
! CATTTCTTAATAAACTGTCA+TGG - chr1_3:56277100-56277119 Msa0127060:intron 25.0%
! TTAATAAACTGTCATGGATT+TGG - chr1_3:56277106-56277125 Msa0127060:intron 25.0%
! CTCTCATTTCATAGTTATTT+AGG - chr1_3:56277165-56277184 Msa0127060:intron 25.0%
!!! TAAGTGAAACTACTAGTTTT+AGG - chr1_3:56277199-56277218 Msa0127060:intron 25.0%
! TTACCATACAATTGACAAAT+TGG + chr1_3:56277450-56277469 None:intergenic 25.0%
AAAAGAAACAAGATAGTGAG+TGG - chr1_3:56270924-56270943 Msa0127060:three_prime_UTR 30.0%
TAATCAGAATGATGAAGAAG+GGG + chr1_3:56271076-56271095 None:intergenic 30.0%
TGAAAACCTTGATTCTACTA+CGG + chr1_3:56271155-56271174 None:intergenic 30.0%
! TACTAAATTTTCAATTGGGG+TGG - chr1_3:56271204-56271223 Msa0127060:intron 30.0%
TCATGTTTGTATCAGACTTT+CGG - chr1_3:56271558-56271577 Msa0127060:intron 30.0%
!! TTAGAAGTTTGTTATGCCAT+CGG - chr1_3:56271697-56271716 Msa0127060:intron 30.0%
TGAGTATCTCTATTTCATGT+GGG - chr1_3:56271829-56271848 Msa0127060:intron 30.0%
TCGATAAGTGAAATGAATGT+AGG + chr1_3:56271856-56271875 None:intergenic 30.0%
TAATCTACACAATCCATGAA+AGG + chr1_3:56272038-56272057 None:intergenic 30.0%
CACTACTAGTATATAGTACT+AGG + chr1_3:56272176-56272195 None:intergenic 30.0%
CTAGTACTATATACTAGTAG+TGG - chr1_3:56272174-56272193 Msa0127060:intron 30.0%
!!! ATTCTTTTTTGTCCCTTGAA+GGG - chr1_3:56272256-56272275 Msa0127060:intron 30.0%
AATTCTTGTCGATATATGCT+CGG + chr1_3:56272332-56272351 None:intergenic 30.0%
!! AGAATTTTAATGGACAGAGT+TGG - chr1_3:56272346-56272365 Msa0127060:intron 30.0%
ATCATTTATGATTGCCTTCT+AGG - chr1_3:56272521-56272540 Msa0127060:intron 30.0%
TCATTTATGATTGCCTTCTA+GGG - chr1_3:56272522-56272541 Msa0127060:intron 30.0%
TAGAGAGAACTTATGTTTGA+TGG - chr1_3:56272650-56272669 Msa0127060:intron 30.0%
!! ACAAATTGCTTTGGATTAGT+TGG - chr1_3:56272769-56272788 Msa0127060:intron 30.0%
TATGCATGATAACATCTTCA+TGG - chr1_3:56272895-56272914 Msa0127060:intron 30.0%
ATGCATGATAACATCTTCAT+GGG - chr1_3:56272896-56272915 Msa0127060:intron 30.0%
TCCACAGAATAAAAATGGAA+TGG - chr1_3:56273001-56273020 Msa0127060:CDS 30.0%
!! ACCATTCCATTTTTATTCTG+TGG + chr1_3:56273005-56273024 None:intergenic 30.0%
TCACATAGATCAGATATATG+TGG + chr1_3:56273153-56273172 None:intergenic 30.0%
CTTTAAGTATCAAAATGGAG+TGG - chr1_3:56273269-56273288 Msa0127060:intron 30.0%
!! TTGTAAACTTTTGACTGCAT+AGG + chr1_3:56273412-56273431 None:intergenic 30.0%
ATGCAACTTTACAGTTCTTA+AGG + chr1_3:56274089-56274108 None:intergenic 30.0%
! CTGAGATGAGAATTTTATGT+TGG - chr1_3:56274123-56274142 Msa0127060:intron 30.0%
! ATGAGAATTTTATGTTGGAC+AGG - chr1_3:56274128-56274147 Msa0127060:intron 30.0%
ACAGGTAGTCATACTAAAAT+AGG - chr1_3:56274146-56274165 Msa0127060:intron 30.0%
GAGAAATAGTTAGAGGAAAA+GGG - chr1_3:56274264-56274283 Msa0127060:intron 30.0%
GTAACAAAGCATATTCTCTA+AGG + chr1_3:56274745-56274764 None:intergenic 30.0%
AAGATGAATCAATGCATTTC+AGG - chr1_3:56274988-56275007 Msa0127060:intron 30.0%
!!! ACTTGCTATAATCCTCATTT+TGG - chr1_3:56275270-56275289 Msa0127060:CDS 30.0%
CTCTTTACTATACCAAAATG+AGG + chr1_3:56275285-56275304 None:intergenic 30.0%
TTAACTGGTCAAACTTCATA+TGG + chr1_3:56275325-56275344 None:intergenic 30.0%
AATAAATAAGACAGCTGCAA+GGG + chr1_3:56275540-56275559 None:intergenic 30.0%
AAATAAATAAGACAGCTGCA+AGG + chr1_3:56275541-56275560 None:intergenic 30.0%
!! AATAGTGTTTTTCGATGTCT+AGG - chr1_3:56275631-56275650 Msa0127060:intron 30.0%
!! ATAGTGTTTTTCGATGTCTA+GGG - chr1_3:56275632-56275651 Msa0127060:intron 30.0%
! TTTTTGCAACTATCATTCAG+AGG + chr1_3:56275691-56275710 None:intergenic 30.0%
TTAGTTGGATTGATGCTTAA+TGG - chr1_3:56275721-56275740 Msa0127060:intron 30.0%
TAAATCACCTATTATCTCTG+AGG + chr1_3:56276047-56276066 None:intergenic 30.0%
! CATCCATTGCATATCAATTT+TGG - chr1_3:56276207-56276226 Msa0127060:intron 30.0%
AAAAAATAAGGTATGACTGG+AGG + chr1_3:56276445-56276464 None:intergenic 30.0%
ACAGATACTATCAATTAGGT+TGG - chr1_3:56276510-56276529 Msa0127060:intron 30.0%
TGTATATTTGTGATAGTCGT+GGG - chr1_3:56276548-56276567 Msa0127060:intron 30.0%
! TGTTTTCTTCATGTACTAGT+TGG - chr1_3:56276740-56276759 Msa0127060:CDS 30.0%
TTGGGTAGATAATAGATATG+TGG - chr1_3:56276863-56276882 Msa0127060:intron 30.0%
TGGGTAGATAATAGATATGT+GGG - chr1_3:56276864-56276883 Msa0127060:intron 30.0%
ATTGTGATTATGGGGAAAAT+AGG - chr1_3:56277334-56277353 Msa0127060:intron 30.0%
TTGTGATTATGGGGAAAATA+GGG - chr1_3:56277335-56277354 Msa0127060:intron 30.0%
ACAATTGACAAATTGGAACT+CGG + chr1_3:56277443-56277462 None:intergenic 30.0%
GTTCCAATTTGTCAATTGTA+TGG - chr1_3:56277444-56277463 Msa0127060:intron 30.0%
TAAATATCTTGAGCCTAATC+AGG - chr1_3:56277481-56277500 Msa0127060:intron 30.0%
TTATTATTACACGAAGAAGC+AGG + chr1_3:56277939-56277958 None:intergenic 30.0%
! TAGTTTTCATATGTATCCAG+AGG + chr1_3:56278086-56278105 None:intergenic 30.0%
! TCCTAGTTAGTTCAATTTTC+GGG + chr1_3:56278131-56278150 None:intergenic 30.0%
! GTCCTAGTTAGTTCAATTTT+CGG + chr1_3:56278132-56278151 None:intergenic 30.0%
! GTTTTTCCGTAGTAGAATCA+AGG - chr1_3:56271146-56271165 Msa0127060:CDS 35.0%
! CATTTTCACTCACACATAAG+AGG - chr1_3:56271173-56271192 Msa0127060:intron 35.0%
!! ACGTTTGTTTTCCTCAAAGT+TGG - chr1_3:56271242-56271261 Msa0127060:intron 35.0%
ATGCTTCTTTACTGTTTGTG+CGG - chr1_3:56271314-56271333 Msa0127060:CDS 35.0%
TCTGATACAAACATGAACAC+CGG + chr1_3:56271554-56271573 None:intergenic 35.0%
TGATTAAGTAACTAGACCGA+TGG + chr1_3:56271716-56271735 None:intergenic 35.0%
! CAGTTATGTCTCTCATTTTG+AGG - chr1_3:56271741-56271760 Msa0127060:intron 35.0%
GTGAGTATCTCTATTTCATG+TGG - chr1_3:56271828-56271847 Msa0127060:intron 35.0%
TACTTCTCCCATTGTAGATA+AGG - chr1_3:56271911-56271930 Msa0127060:intron 35.0%
TGAATTACAAAGATAGGCAC+TGG + chr1_3:56271938-56271957 None:intergenic 35.0%
! ACTCTTGCATTTTCCTTTCA+TGG - chr1_3:56272022-56272041 Msa0127060:intron 35.0%
! CATGGATTGTGTAGATTAAG+AGG - chr1_3:56272040-56272059 Msa0127060:intron 35.0%
ACTATATACTAGTAGTGGCT+TGG - chr1_3:56272179-56272198 Msa0127060:intron 35.0%
!!! GATTCTTTTTTGTCCCTTGA+AGG - chr1_3:56272255-56272274 Msa0127060:intron 35.0%
!!! TTCTTTTTTGTCCCTTGAAG+GGG - chr1_3:56272257-56272276 Msa0127060:intron 35.0%
! TTAATGGACAGAGTTGGTTT+AGG - chr1_3:56272352-56272371 Msa0127060:intron 35.0%
AAGTCATACATGTCTCTTCA+CGG + chr1_3:56272416-56272435 None:intergenic 35.0%
TTGCTTGATGAGGAGTAAAA+TGG - chr1_3:56272594-56272613 Msa0127060:intron 35.0%
!! ATATCAGATAGTTCTGGTTC+TGG + chr1_3:56272712-56272731 None:intergenic 35.0%
AGCTCTCCACAGAATAAAAA+TGG - chr1_3:56272996-56273015 Msa0127060:CDS 35.0%
AATGGTTGAAAGCTTGACTT+TGG - chr1_3:56273019-56273038 Msa0127060:CDS 35.0%
ATGGTTGAAAGCTTGACTTT+GGG - chr1_3:56273020-56273039 Msa0127060:CDS 35.0%
TGGAGTCTCGACATAATAAT+GGG - chr1_3:56273061-56273080 Msa0127060:intron 35.0%
TAGATCAGATATATGTGGTG+TGG + chr1_3:56273148-56273167 None:intergenic 35.0%
AAATTGCCAACTTATTCACC+AGG - chr1_3:56273325-56273344 Msa0127060:intron 35.0%
ATTTAGCCTGGTGAATAAGT+TGG + chr1_3:56273334-56273353 None:intergenic 35.0%
CTGAATCATAAAGTTCCATC+TGG + chr1_3:56273360-56273379 None:intergenic 35.0%
CAGATGGAACTTTATGATTC+AGG - chr1_3:56273358-56273377 Msa0127060:intron 35.0%
!! GGCTCTAAAAATCTAGTGAA+GGG + chr1_3:56273510-56273529 None:intergenic 35.0%
!! AGGCTCTAAAAATCTAGTGA+AGG + chr1_3:56273511-56273530 None:intergenic 35.0%
TGAGAAGTTCAGAAGTTTGA+GGG - chr1_3:56273530-56273549 Msa0127060:intron 35.0%
! AAATTTTGTTGAAGGCAGTC+TGG - chr1_3:56273642-56273661 Msa0127060:intron 35.0%
TGAAATGACAACAAGTCCAT+CGG + chr1_3:56273733-56273752 None:intergenic 35.0%
TTCTGTGCTCATATCATCAA+TGG + chr1_3:56273814-56273833 None:intergenic 35.0%
TGATATGAGCACAGAAAAGT+TGG - chr1_3:56273818-56273837 Msa0127060:intron 35.0%
GATATGAGCACAGAAAAGTT+GGG - chr1_3:56273819-56273838 Msa0127060:intron 35.0%
!! TATTGATTCGAAAGCACAAG+TGG + chr1_3:56273896-56273915 None:intergenic 35.0%
ACTGTAAAGTTGCATACAAC+TGG - chr1_3:56274094-56274113 Msa0127060:intron 35.0%
ATACGTGGAGAAATAGTTAG+AGG - chr1_3:56274257-56274276 Msa0127060:intron 35.0%
GGAGAAATAGTTAGAGGAAA+AGG - chr1_3:56274263-56274282 Msa0127060:intron 35.0%
! ATTCGGCCTATAGTTTTCTA+TGG + chr1_3:56274293-56274312 None:intergenic 35.0%
GGCACAATAATACTTTGTCT+TGG + chr1_3:56274362-56274381 None:intergenic 35.0%
AATGGCTCATACTAGAGTAA+CGG + chr1_3:56274481-56274500 None:intergenic 35.0%
TCTAGTATGAGCCATTTATG+AGG - chr1_3:56274485-56274504 Msa0127060:intron 35.0%
! GTAATTTCCTTTAGAAGGTC+AGG + chr1_3:56274606-56274625 None:intergenic 35.0%
CCTCTGTAATTTCCTTTAGA+AGG + chr1_3:56274611-56274630 None:intergenic 35.0%
! CCTTCTAAAGGAAATTACAG+AGG - chr1_3:56274608-56274627 Msa0127060:intron 35.0%
! GAGAATATGCTTTGTTACCT+AGG - chr1_3:56274747-56274766 Msa0127060:intron 35.0%
GACTAAATCAGCAGAGTTAA+CGG + chr1_3:56274848-56274867 None:intergenic 35.0%
TAATTAGGCCTCTCAAGTAA+TGG + chr1_3:56274884-56274903 None:intergenic 35.0%
! ACAACTTACGAGATGCATTT+TGG + chr1_3:56275118-56275137 None:intergenic 35.0%
ATCTCGTAAGTTGTGATTGA+TGG - chr1_3:56275124-56275143 Msa0127060:intron 35.0%
TCTCGTAAGTTGTGATTGAT+GGG - chr1_3:56275125-56275144 Msa0127060:intron 35.0%
AGCAAGTAAGAATTATGGCT+TGG + chr1_3:56275257-56275276 None:intergenic 35.0%
TCAAACTTCATATGGTCATC+GGG + chr1_3:56275317-56275336 None:intergenic 35.0%
GTCAAACTTCATATGGTCAT+CGG + chr1_3:56275318-56275337 None:intergenic 35.0%
ATACTTAGTGTGGATGTATC+TGG + chr1_3:56275424-56275443 None:intergenic 35.0%
AAAGAGAAACAATCCCAACA+AGG + chr1_3:56275473-56275492 None:intergenic 35.0%
GATTGATGCTTAATGGAGAT+GGG - chr1_3:56275728-56275747 Msa0127060:intron 35.0%
CTTAATGGAGATGGGAATTT+GGG - chr1_3:56275736-56275755 Msa0127060:intron 35.0%
ATACTTCTTTATGAACCTCG+TGG - chr1_3:56275809-56275828 Msa0127060:intron 35.0%
GAACCTCGTGGTATTAAATT+CGG - chr1_3:56275821-56275840 Msa0127060:intron 35.0%
AAGAAGCAATCAATACGTTC+AGG - chr1_3:56275992-56276011 Msa0127060:intron 35.0%
! TTTTGGACCTCAGAGATAAT+AGG - chr1_3:56276037-56276056 Msa0127060:intron 35.0%
! GAAGCTTATATTTGTTGCAG+TGG - chr1_3:56276111-56276130 Msa0127060:intron 35.0%
AGACATATCTTACCAAAGCT+TGG + chr1_3:56276166-56276185 None:intergenic 35.0%
CAGCCAAAATTGATATGCAA+TGG + chr1_3:56276213-56276232 None:intergenic 35.0%
!! CATTGCATATCAATTTTGGC+TGG - chr1_3:56276211-56276230 Msa0127060:intron 35.0%
! ACCAGTATTCTCACCTTTTA+TGG - chr1_3:56276310-56276329 Msa0127060:intron 35.0%
TCCATAAAAGGTGAGAATAC+TGG + chr1_3:56276314-56276333 None:intergenic 35.0%
TAGCACTTGTGATCCATAAA+AGG + chr1_3:56276326-56276345 None:intergenic 35.0%
!! AAAAGGTGTTTCTGACTGTA+TGG + chr1_3:56276350-56276369 None:intergenic 35.0%
TATCTGTTAGAACTTGAAGC+TGG + chr1_3:56276497-56276516 None:intergenic 35.0%
!! CTATCAATTAGGTTGGACAA+AGG - chr1_3:56276517-56276536 Msa0127060:intron 35.0%
GTGTATATTTGTGATAGTCG+TGG - chr1_3:56276547-56276566 Msa0127060:intron 35.0%
GTATATTTGTGATAGTCGTG+GGG - chr1_3:56276549-56276568 Msa0127060:intron 35.0%
!! ATTGGTGTCATATATCGTGT+CGG - chr1_3:56276671-56276690 Msa0127060:CDS 35.0%
! CTAGTTGGTTTCGCAAAAAT+AGG - chr1_3:56276755-56276774 Msa0127060:intron 35.0%
TTCGCAAAAATAGGATTTGC+AGG - chr1_3:56276764-56276783 Msa0127060:intron 35.0%
CATTGAGGGATACTTGTATT+GGG - chr1_3:56276796-56276815 Msa0127060:intron 35.0%
AGAATCGCAAACTCTGTATT+GGG - chr1_3:56276845-56276864 Msa0127060:intron 35.0%
GGGTAGATAATAGATATGTG+GGG - chr1_3:56276865-56276884 Msa0127060:intron 35.0%
TAGTAAGCAGTTATTGGGTA+AGG - chr1_3:56276889-56276908 Msa0127060:intron 35.0%
AGTAAGCAGTTATTGGGTAA+GGG - chr1_3:56276890-56276909 Msa0127060:intron 35.0%
TTGCAACATCTCAACTATTG+AGG + chr1_3:56277139-56277158 None:intergenic 35.0%
AGTAGTTTCACTTACATCAC+AGG + chr1_3:56277193-56277212 None:intergenic 35.0%
! CTTGTTATCTTTCAATGCAC+CGG + chr1_3:56277543-56277562 None:intergenic 35.0%
GTGCATTGAAAGATAACAAG+CGG - chr1_3:56277543-56277562 Msa0127060:intron 35.0%
TGCATTGAAAGATAACAAGC+GGG - chr1_3:56277544-56277563 Msa0127060:intron 35.0%
ATTTACCCCTTTCCAAATGT+TGG + chr1_3:56277587-56277606 None:intergenic 35.0%
! GGAAAGGGGTAAATTACTTT+TGG - chr1_3:56277593-56277612 Msa0127060:intron 35.0%
!! GGGGTAAATTACTTTTGGTT+TGG - chr1_3:56277598-56277617 Msa0127060:intron 35.0%
CAAGATGTGTAGCTCATATT+AGG + chr1_3:56277658-56277677 None:intergenic 35.0%
! TCCAAATGCAAGGTGTTAAA+GGG + chr1_3:56277833-56277852 None:intergenic 35.0%
! ATCCAAATGCAAGGTGTTAA+AGG + chr1_3:56277834-56277853 None:intergenic 35.0%
! TTAGGAAATGATGTTGGTAG+AGG + chr1_3:56277882-56277901 None:intergenic 35.0%
TCTACCAACATCATTTCCTA+AGG - chr1_3:56277881-56277900 Msa0127060:CDS 35.0%
TCATCCTTAGGAAATGATGT+TGG + chr1_3:56277888-56277907 None:intergenic 35.0%
CAAAATGCATCTTCATCCTT+AGG + chr1_3:56277900-56277919 None:intergenic 35.0%
TCCCGAAAATTGAACTAACT+AGG - chr1_3:56278127-56278146 Msa0127060:five_prime_UTR 35.0%
TTCTGGCAGGTTTATTTGTT+TGG + chr1_3:56278163-56278182 None:intergenic 35.0%
AACAAATAAACCTGCCAGAA+TGG - chr1_3:56278163-56278182 Msa0127060:five_prime_UTR 35.0%
ACAAATAAACCTGCCAGAAT+GGG - chr1_3:56278164-56278183 Msa0127060:five_prime_UTR 35.0%
ACAAGATAGTGAGTGGTTTG+AGG - chr1_3:56270931-56270950 Msa0127060:three_prime_UTR 40.0%
AGATTGTTGGGTAACGAAGA+GGG + chr1_3:56271026-56271045 None:intergenic 40.0%
CCTGAAAAACGGAGATTGTT+GGG + chr1_3:56271038-56271057 None:intergenic 40.0%
ACCTGAAAAACGGAGATTGT+TGG + chr1_3:56271039-56271058 None:intergenic 40.0%
TGAGAAGGGAACCTGAAAAA+CGG + chr1_3:56271049-56271068 None:intergenic 40.0%
GAAGAAGGGGAAATTGAGAA+GGG + chr1_3:56271063-56271082 None:intergenic 40.0%
TGAAGAAGGGGAAATTGAGA+AGG + chr1_3:56271064-56271083 None:intergenic 40.0%
TTATGCTGCAGGTTTCAAAC+TGG - chr1_3:56271119-56271138 Msa0127060:CDS 40.0%
TTCTTTACTGTTTGTGCGGT+TGG - chr1_3:56271318-56271337 Msa0127060:CDS 40.0%
! TGGAGTTATGTTGGTTGTGT+CGG - chr1_3:56271345-56271364 Msa0127060:CDS 40.0%
! GGAATTTGGGTTAGATTACG+TGG - chr1_3:56271443-56271462 Msa0127060:intron 40.0%
GTCTGTGTAAGTGTTATGTC+CGG - chr1_3:56271532-56271551 Msa0127060:intron 40.0%
CACTGGACCTTATCTACAAT+GGG + chr1_3:56271921-56271940 None:intergenic 40.0%
!! GTTGAGGTTGTTGACTTTAG+AGG - chr1_3:56272139-56272158 Msa0127060:intron 40.0%
TGTTTCATGCTTGCTTGATG+AGG - chr1_3:56272584-56272603 Msa0127060:intron 40.0%
! GTTGGTTTCAGATAGAAGTG+TGG - chr1_3:56272787-56272806 Msa0127060:intron 40.0%
AGAGTCAAGAGGACAGAAAA+AGG + chr1_3:56272872-56272891 None:intergenic 40.0%
! TTTTCTGTCCTCTTGACTCT+TGG - chr1_3:56272872-56272891 Msa0127060:intron 40.0%
CATGATAACATCTTCATGGG+TGG - chr1_3:56272899-56272918 Msa0127060:intron 40.0%
!!! ATGGGTGGTGGTTTTAAACA+TGG - chr1_3:56272914-56272933 Msa0127060:intron 40.0%
CTGGAGTCTCGACATAATAA+TGG - chr1_3:56273060-56273079 Msa0127060:intron 40.0%
ATAAATCAGCGAGAATGACC+TGG - chr1_3:56273193-56273212 Msa0127060:intron 40.0%
TAAATCAGCGAGAATGACCT+GGG - chr1_3:56273194-56273213 Msa0127060:intron 40.0%
AATCATTCTTCAATCTGCCC+AGG + chr1_3:56273214-56273233 None:intergenic 40.0%
GCTGCATTTGTTCTCAGATA+TGG - chr1_3:56273452-56273471 Msa0127060:intron 40.0%
AAGAAAGATGCTTGCCACAT+TGG - chr1_3:56273479-56273498 Msa0127060:intron 40.0%
CTCAAACTTCTGAACTTCTC+AGG + chr1_3:56273531-56273550 None:intergenic 40.0%
CTGAGAAGTTCAGAAGTTTG+AGG - chr1_3:56273529-56273548 Msa0127060:intron 40.0%
CCAATATGCATTACACAGTC+AGG + chr1_3:56273606-56273625 None:intergenic 40.0%
CCTGACTGTGTAATGCATAT+TGG - chr1_3:56273603-56273622 Msa0127060:intron 40.0%
AAAACACCAGCTCTATATGC+AGG + chr1_3:56273771-56273790 None:intergenic 40.0%
! TATAGAGCTGGTGTTTTGTC+TGG - chr1_3:56273774-56273793 Msa0127060:intron 40.0%
TTTGTCTGGAGATGTTATCC+TGG - chr1_3:56273788-56273807 Msa0127060:intron 40.0%
GATGAAGAAAAACCCACTGT+AGG + chr1_3:56273866-56273885 None:intergenic 40.0%
! TCAGTTGGTTCAAACATACG+TGG - chr1_3:56274242-56274261 Msa0127060:intron 40.0%
GGGAGACCATAGAAAACTAT+AGG - chr1_3:56274284-56274303 Msa0127060:intron 40.0%
! TATCAAAGTGTTCTTCCACC+AGG + chr1_3:56274409-56274428 None:intergenic 40.0%
TTGATTGCCTGACCTTCTAA+AGG - chr1_3:56274596-56274615 Msa0127060:intron 40.0%
TACCAACTTACGTTAGAGCT+AGG + chr1_3:56274688-56274707 None:intergenic 40.0%
! GCAAGTTTTTGCATCATCCT+AGG + chr1_3:56274767-56274786 None:intergenic 40.0%
TAAATCAGCAGAGTTAACGG+TGG + chr1_3:56274845-56274864 None:intergenic 40.0%
GGAAATAATTCCCCAACAGT+TGG - chr1_3:56275068-56275087 Msa0127060:intron 40.0%
GAAGCAAGAAAAGTTCTGCT+TGG + chr1_3:56275151-56275170 None:intergenic 40.0%
! GAATTATGGCTTGGAGTACT+AGG + chr1_3:56275248-56275267 None:intergenic 40.0%
!! TTTTTCGATGTCTAGGGTTG+TGG - chr1_3:56275638-56275657 Msa0127060:intron 40.0%
GGATTGATGCTTAATGGAGA+TGG - chr1_3:56275727-56275746 Msa0127060:intron 40.0%
GCTTAATGGAGATGGGAATT+TGG - chr1_3:56275735-56275754 Msa0127060:intron 40.0%
TGACCGAATTTAATACCACG+AGG + chr1_3:56275827-56275846 None:intergenic 40.0%
! GCTTATATTTGTTGCAGTGG+TGG - chr1_3:56276114-56276133 Msa0127060:intron 40.0%
TGGCAATCTCAATTCCTTCT+GGG + chr1_3:56276146-56276165 None:intergenic 40.0%
TTGGCAATCTCAATTCCTTC+TGG + chr1_3:56276147-56276166 None:intergenic 40.0%
GAATTGAGATTGCCAAGCTT+TGG - chr1_3:56276151-56276170 Msa0127060:intron 40.0%
!!! TGCATATCAATTTTGGCTGG+TGG - chr1_3:56276214-56276233 Msa0127060:intron 40.0%
!!! GCATATCAATTTTGGCTGGT+GGG - chr1_3:56276215-56276234 Msa0127060:intron 40.0%
AAAAGGTGAGAATACTGGTG+TGG + chr1_3:56276309-56276328 None:intergenic 40.0%
! TGACTGGAGGAGTTCATTTT+TGG + chr1_3:56276432-56276451 None:intergenic 40.0%
CGAGATATACTGGATACAGA+TGG - chr1_3:56276574-56276593 Msa0127060:intron 40.0%
TATGACACCAATGCAATGAG+AGG + chr1_3:56276663-56276682 None:intergenic 40.0%
!! TTGGTGTCATATATCGTGTC+GGG - chr1_3:56276672-56276691 Msa0127060:CDS 40.0%
GCATTGAGGGATACTTGTAT+TGG - chr1_3:56276795-56276814 Msa0127060:intron 40.0%
AGGGATACTTGTATTGGGTT+TGG - chr1_3:56276801-56276820 Msa0127060:intron 40.0%
GGGATACTTGTATTGGGTTT+GGG - chr1_3:56276802-56276821 Msa0127060:intron 40.0%
GAGAATCGCAAACTCTGTAT+TGG - chr1_3:56276844-56276863 Msa0127060:intron 40.0%
TGGGGATAGTAAGCAGTTAT+TGG - chr1_3:56276883-56276902 Msa0127060:intron 40.0%
GGGGATAGTAAGCAGTTATT+GGG - chr1_3:56276884-56276903 Msa0127060:intron 40.0%
GTAAGCAGTTATTGGGTAAG+GGG - chr1_3:56276891-56276910 Msa0127060:intron 40.0%
TGTTTACCAGACACACCTTT+CGG - chr1_3:56277290-56277309 Msa0127060:intron 40.0%
TTGACAAATTGGAACTCGGA+AGG + chr1_3:56277439-56277458 None:intergenic 40.0%
TGAGCCTAATCAGGTAAACA+AGG - chr1_3:56277490-56277509 Msa0127060:intron 40.0%
GAGCCTAATCAGGTAAACAA+GGG - chr1_3:56277491-56277510 Msa0127060:intron 40.0%
! GTTCCCTTGTTTACCTGATT+AGG + chr1_3:56277497-56277516 None:intergenic 40.0%
ATATGAGCTACACATCTTGC+AGG - chr1_3:56277659-56277678 Msa0127060:intron 40.0%
CTGAGAGCTCAAATACTGAT+TGG + chr1_3:56277690-56277709 None:intergenic 40.0%
TCAGTATTTGAGCTCTCAGA+TGG - chr1_3:56277691-56277710 Msa0127060:CDS 40.0%
! CCAAATGCAAGGTGTTAAAG+GGG + chr1_3:56277832-56277851 None:intergenic 40.0%
AACACCTTGCATTTGGATGT+AGG - chr1_3:56277836-56277855 Msa0127060:CDS 40.0%
! GAAATGATGTTGGTAGAGGA+TGG + chr1_3:56277878-56277897 None:intergenic 40.0%
CATATGTATCCAGAGGTTTG+TGG + chr1_3:56278079-56278098 None:intergenic 40.0%
!! AGTTCAATTTTCGGGAACAC+AGG + chr1_3:56278123-56278142 None:intergenic 40.0%
TGATCTCCATGGAAGAGTGA+AGG + chr1_3:56270975-56270994 None:intergenic 45.0%
AGAGCTAGCAATGATCTCCA+TGG + chr1_3:56270986-56271005 None:intergenic 45.0%
GAGATTGTTGGGTAACGAAG+AGG + chr1_3:56271027-56271046 None:intergenic 45.0%
!! CCCAACAATCTCCGTTTTTC+AGG - chr1_3:56271035-56271054 Msa0127060:three_prime_UTR 45.0%
CGAAGGAAACTCCAACTTTG+AGG + chr1_3:56271256-56271275 None:intergenic 45.0%
CAGAAGGAGGAAATGGAACA+AGG - chr1_3:56271276-56271295 Msa0127060:CDS 45.0%
GTTGGTTGCTGGAGTTATGT+TGG - chr1_3:56271336-56271355 Msa0127060:CDS 45.0%
! GCACTGACACTTCAAATCGA+AGG - chr1_3:56271465-56271484 Msa0127060:CDS 45.0%
GTGAGTGTCAAGGTGAATGT+TGG + chr1_3:56271786-56271805 None:intergenic 45.0%
TTGACACTCACTCACTCGAT+GGG - chr1_3:56271795-56271814 Msa0127060:intron 45.0%
CAATGGGAGAAGTAGTGCTA+GGG + chr1_3:56271905-56271924 None:intergenic 45.0%
ACAATGGGAGAAGTAGTGCT+AGG + chr1_3:56271906-56271925 None:intergenic 45.0%
GCACTGGACCTTATCTACAA+TGG + chr1_3:56271922-56271941 None:intergenic 45.0%
GGAAGAGAATCTCCTCTTTC+TGG - chr1_3:56272287-56272306 Msa0127060:intron 45.0%
AGAGAATCTCCTCTTTCTGG+AGG - chr1_3:56272290-56272309 Msa0127060:intron 45.0%
GTCTCTTCACGGTTGTTCAT+GGG + chr1_3:56272405-56272424 None:intergenic 45.0%
TGTCTCTTCACGGTTGTTCA+TGG + chr1_3:56272406-56272425 None:intergenic 45.0%
! TGATTGCCTTCTAGGGATTG+AGG - chr1_3:56272529-56272548 Msa0127060:intron 45.0%
CATGCATACCAAGAGTCAAG+AGG + chr1_3:56272883-56272902 None:intergenic 45.0%
GATAACATCTTCATGGGTGG+TGG - chr1_3:56272902-56272921 Msa0127060:intron 45.0%
!! GCTTGACTTTGGGTTGTCAT+CGG - chr1_3:56273030-56273049 Msa0127060:CDS 45.0%
ACCAGGCTAAATTGTCCAGA+TGG - chr1_3:56273342-56273361 Msa0127060:intron 45.0%
TCCATCTGGACAATTTAGCC+TGG + chr1_3:56273346-56273365 None:intergenic 45.0%
AGTGAAGGGATCATCCAATG+TGG + chr1_3:56273496-56273515 None:intergenic 45.0%
! TGAAGGCAGTCTGGAACTAA+AGG - chr1_3:56273651-56273670 Msa0127060:intron 45.0%
ACTGGAGTGGGGATATCAAT+AGG - chr1_3:56273681-56273700 Msa0127060:intron 45.0%
ATGGCATGTCTGCTTTGGTA+GGG + chr1_3:56273710-56273729 None:intergenic 45.0%
ATGACAACAAGTCCATCGGA+TGG + chr1_3:56273729-56273748 None:intergenic 45.0%
! GTTGTCATTTCAGCTTCTCC+AGG - chr1_3:56273741-56273760 Msa0127060:intron 45.0%
TGCTCATATCATCAATGGCC+AGG + chr1_3:56273809-56273828 None:intergenic 45.0%
GGAAATTACAGAGGACCTGA+TGG - chr1_3:56274617-56274636 Msa0127060:intron 45.0%
AATGCAACAGAGCTTCCATC+AGG + chr1_3:56274635-56274654 None:intergenic 45.0%
! GTTGCATTGACCATACGTAG+TGG - chr1_3:56274647-56274666 Msa0127060:intron 45.0%
TACGTCAGAACCACTACGTA+TGG + chr1_3:56274660-56274679 None:intergenic 45.0%
!! CACCTAGCTCTAACGTAAGT+TGG - chr1_3:56274683-56274702 Msa0127060:intron 45.0%
TTGCACAGTCTTGACTTCAC+TGG + chr1_3:56275035-56275054 None:intergenic 45.0%
GAAACAATCCCAACAAGGCA+GGG + chr1_3:56275468-56275487 None:intergenic 45.0%
AGAAACAATCCCAACAAGGC+AGG + chr1_3:56275469-56275488 None:intergenic 45.0%
CCTGCAAGGATGACAGATTA+CGG + chr1_3:56275964-56275983 None:intergenic 45.0%
! CTTCTTTGATAGCACCTGCA+AGG + chr1_3:56275978-56275997 None:intergenic 45.0%
CAGAGGTTCAGAAGTTGCTA+GGG + chr1_3:56276608-56276627 None:intergenic 45.0%
AAAATTACCAGCACAGCCAG+AGG + chr1_3:56276625-56276644 None:intergenic 45.0%
GCTTTCTCCTCTCATTGCAT+TGG - chr1_3:56276653-56276672 Msa0127060:CDS 45.0%
AGTGCCAGCGAAATATTAGC+CGG - chr1_3:56277521-56277540 Msa0127060:intron 45.0%
AACAAGCGGGCCATATTGTA+CGG - chr1_3:56277557-56277576 Msa0127060:intron 45.0%
!! TGTTGGCTCTCCGTACAATA+TGG + chr1_3:56277570-56277589 None:intergenic 45.0%
TTGTACGGAGAGCCAACATT+TGG - chr1_3:56277572-56277591 Msa0127060:intron 45.0%
GGAGAGCCAACATTTGGAAA+GGG - chr1_3:56277578-56277597 Msa0127060:intron 45.0%
GAGAGCCAACATTTGGAAAG+GGG - chr1_3:56277579-56277598 Msa0127060:intron 45.0%
TTGTCAATATCTGTGTGCGC+AGG + chr1_3:56277754-56277773 None:intergenic 45.0%
TGCGCACACAGATATTGACA+AGG - chr1_3:56277753-56277772 Msa0127060:CDS 45.0%
CCCCTTTAACACCTTGCATT+TGG - chr1_3:56277829-56277848 Msa0127060:CDS 45.0%
CCAACCTACATCCAAATGCA+AGG + chr1_3:56277843-56277862 None:intergenic 45.0%
CCTTGCATTTGGATGTAGGT+TGG - chr1_3:56277840-56277859 Msa0127060:CDS 45.0%
! TGCATTTTGCAATTGCCTGC+AGG - chr1_3:56277911-56277930 Msa0127060:intron 45.0%
ACAATGTTGCCACAAACCTC+TGG - chr1_3:56278067-56278086 Msa0127060:five_prime_UTR 45.0%
!!! TTTTTAAAAAAAAAAAAAAC+TGG + chr1_3:56277794-56277813 None:intergenic 5.0%
! TAGTGAGTGGTTTGAGGCAG+AGG - chr1_3:56270937-56270956 Msa0127060:three_prime_UTR 50.0%
GTTCTGCCTTCACTCTTCCA+TGG - chr1_3:56270966-56270985 Msa0127060:three_prime_UTR 50.0%
GGGTAACGAAGAGGGAAAGA+AGG + chr1_3:56271018-56271037 None:intergenic 50.0%
GTTGGAGTTTCCTTCGCAGA+AGG - chr1_3:56271260-56271279 Msa0127060:intron 50.0%
TCCTTCGCAGAAGGAGGAAA+TGG - chr1_3:56271269-56271288 Msa0127060:intron 50.0%
TCCATTTCCTCCTTCTGCGA+AGG + chr1_3:56271273-56271292 None:intergenic 50.0%
CATCGAGTGAGTGAGTGTCA+AGG + chr1_3:56271796-56271815 None:intergenic 50.0%
CTTGACACTCACTCACTCGA+TGG - chr1_3:56271794-56271813 Msa0127060:intron 50.0%
GAGGAGATTCTCTTCCGTCA+GGG + chr1_3:56272283-56272302 None:intergenic 50.0%
AGAGGAGATTCTCTTCCGTC+AGG + chr1_3:56272284-56272303 None:intergenic 50.0%
TCCACTCCTCAATCCCTAGA+AGG + chr1_3:56272538-56272557 None:intergenic 50.0%
GGTTGTCATCGGTGATTGTC+TGG - chr1_3:56273041-56273060 Msa0127060:CDS 50.0%
!! GGAACTAAAGGCGCTCTAAC+TGG - chr1_3:56273663-56273682 Msa0127060:intron 50.0%
!! TAAAGGCGCTCTAACTGGAG+TGG - chr1_3:56273668-56273687 Msa0127060:intron 50.0%
!! AAAGGCGCTCTAACTGGAGT+GGG - chr1_3:56273669-56273688 Msa0127060:intron 50.0%
GATGGCATGTCTGCTTTGGT+AGG + chr1_3:56273711-56273730 None:intergenic 50.0%
ATCGGATGGCATGTCTGCTT+TGG + chr1_3:56273715-56273734 None:intergenic 50.0%
AAAGCAGACATGCCATCCGA+TGG - chr1_3:56273714-56273733 Msa0127060:intron 50.0%
GTCATTTCAGCTTCTCCAGG+AGG - chr1_3:56273744-56273763 Msa0127060:intron 50.0%
! CGAAAGCACAAGTGGCATGT+AGG + chr1_3:56273888-56273907 None:intergenic 50.0%
AGGTAGAGTCTCGTCTCAGT+TGG - chr1_3:56274227-56274246 Msa0127060:intron 50.0%
TCCATGTAGTCAATACCGCC+TGG - chr1_3:56274388-56274407 Msa0127060:CDS 50.0%
!! ACCAGGCGGTATTGACTACA+TGG + chr1_3:56274392-56274411 None:intergenic 50.0%
ATGTAGTCAATACCGCCTGG+TGG - chr1_3:56274391-56274410 Msa0127060:CDS 50.0%
! CAAAGTGTTCTTCCACCAGG+CGG + chr1_3:56274406-56274425 None:intergenic 50.0%
GGGGAATTATTTCCTGCAGC+AGG + chr1_3:56275062-56275081 None:intergenic 50.0%
AGCGCGCTCAATACTTAGTG+TGG + chr1_3:56275434-56275453 None:intergenic 50.0%
ACATGACTTCCCTGCCTTGT+TGG - chr1_3:56275456-56275475 Msa0127060:intron 50.0%
! CATGACTTCCCTGCCTTGTT+GGG - chr1_3:56275457-56275476 Msa0127060:intron 50.0%
AGGAACCTGCTTACTGCAGA+CGG - chr1_3:56275499-56275518 Msa0127060:CDS 50.0%
CTTACTGCAGACGGGCATTT+GGG - chr1_3:56275508-56275527 Msa0127060:CDS 50.0%
! TTCGATGTCTAGGGTTGTGG+TGG - chr1_3:56275641-56275660 Msa0127060:intron 50.0%
CCGTAATCTGTCATCCTTGC+AGG - chr1_3:56275961-56275980 Msa0127060:intron 50.0%
! AGTGGTGGTCTTTTCCCAGA+AGG - chr1_3:56276129-56276148 Msa0127060:intron 50.0%
TCGTGGGGTTCGAGATATAC+TGG - chr1_3:56276564-56276583 Msa0127060:intron 50.0%
CCAGAGGTTCAGAAGTTGCT+AGG + chr1_3:56276609-56276628 None:intergenic 50.0%
CCTAGCAACTTCTGAACCTC+TGG - chr1_3:56276606-56276625 Msa0127060:intron 50.0%
TGCAGGACATGCATGCATTG+AGG - chr1_3:56276781-56276800 Msa0127060:intron 50.0%
GCAGGACATGCATGCATTGA+GGG - chr1_3:56276782-56276801 Msa0127060:intron 50.0%
TTGGGTTTGGGCAGTTCGTA+CGG - chr1_3:56276814-56276833 Msa0127060:intron 50.0%
GTTATCTACGGTACCGCTGT+GGG + chr1_3:56276951-56276970 None:intergenic 50.0%
TGTTATCTACGGTACCGCTG+TGG + chr1_3:56276952-56276971 None:intergenic 50.0%
TGCAGTCCAGCAAAAACTCG+AGG - chr1_3:56277262-56277281 Msa0127060:intron 50.0%
GCAGTCCAGCAAAAACTCGA+GGG - chr1_3:56277263-56277282 Msa0127060:intron 50.0%
! AACCACCCTCGAGTTTTTGC+TGG + chr1_3:56277271-56277290 None:intergenic 50.0%
GATTCATGGACCTGACCGAA+AGG + chr1_3:56277308-56277327 None:intergenic 50.0%
!! TGCACCGGCTAATATTTCGC+TGG + chr1_3:56277528-56277547 None:intergenic 50.0%
CGGAGAGCCAACATTTGGAA+AGG - chr1_3:56277577-56277596 Msa0127060:intron 50.0%
TTTGAGCTCTCAGATGGCTC+AGG - chr1_3:56277697-56277716 Msa0127060:CDS 50.0%
! GATGTTGGTAGAGGATGGTC+AGG + chr1_3:56277873-56277892 None:intergenic 50.0%
! TGAGTGGTTTGAGGCAGAGG+TGG - chr1_3:56270940-56270959 Msa0127060:three_prime_UTR 55.0%
! TGGTTTGAGGCAGAGGTGGT+AGG - chr1_3:56270944-56270963 Msa0127060:three_prime_UTR 55.0%
GGAGTTTCCTTCGCAGAAGG+AGG - chr1_3:56271263-56271282 Msa0127060:intron 55.0%
! CTGTTTGTGCGGTTGGTTGC+TGG - chr1_3:56271325-56271344 Msa0127060:CDS 55.0%
ACACTCACTCACTCGATGGG+TGG - chr1_3:56271798-56271817 Msa0127060:intron 55.0%
! ATCTCCTCTTTCTGGAGGCG+TGG - chr1_3:56272295-56272314 Msa0127060:intron 55.0%
TTCTCCACGCCTCCAGAAAG+AGG + chr1_3:56272302-56272321 None:intergenic 55.0%
! GCCTTCTAGGGATTGAGGAG+TGG - chr1_3:56272534-56272553 Msa0127060:intron 55.0%
! AAGGCGCTCTAACTGGAGTG+GGG - chr1_3:56273670-56273689 Msa0127060:intron 55.0%
GCTCTATATGCAGGACCTCC+TGG + chr1_3:56273762-56273781 None:intergenic 55.0%
GGAGGTCCTGCATATAGAGC+TGG - chr1_3:56273762-56273781 Msa0127060:intron 55.0%
ATGCAGCTGAACGCCTACAG+TGG - chr1_3:56273850-56273869 Msa0127060:intron 55.0%
TGCAGCTGAACGCCTACAGT+GGG - chr1_3:56273851-56273870 Msa0127060:intron 55.0%
CTGTGCAAGTTACCTGCTGC+AGG - chr1_3:56275047-56275066 Msa0127060:intron 55.0%
GGAACCTGCTTACTGCAGAC+GGG - chr1_3:56275500-56275519 Msa0127060:CDS 55.0%
AATGCCCGTCTGCAGTAAGC+AGG + chr1_3:56275507-56275526 None:intergenic 55.0%
GCTTACTGCAGACGGGCATT+TGG - chr1_3:56275507-56275526 Msa0127060:CDS 55.0%
TTCTGAACCTCTGGCTGTGC+TGG - chr1_3:56276615-56276634 Msa0127060:intron 55.0%
TGGGTTTGGGCAGTTCGTAC+GGG - chr1_3:56276815-56276834 Msa0127060:intron 55.0%
CCTTTCCTGTGATCCCACAG+CGG - chr1_3:56276935-56276954 Msa0127060:intron 55.0%
GTCCAGCAAAAACTCGAGGG+TGG - chr1_3:56277266-56277285 Msa0127060:intron 55.0%
ACCAGACACACCTTTCGGTC+AGG - chr1_3:56277295-56277314 Msa0127060:intron 55.0%
! ACCTGACCGAAAGGTGTGTC+TGG + chr1_3:56277299-56277318 None:intergenic 55.0%
ACGAAGAAGCAGGATCCTGC+AGG + chr1_3:56277929-56277948 None:intergenic 55.0%
TTCCGTCAGGGCCCCTTCAA+GGG + chr1_3:56272271-56272290 None:intergenic 60.0%
CCGCTGTGGGATCACAGGAA+AGG + chr1_3:56276938-56276957 None:intergenic 60.0%
GTCCCTTGAAGGGGCCCTGA+CGG - chr1_3:56272266-56272285 Msa0127060:intron 65.0%
CTTCCGTCAGGGCCCCTTCA+AGG + chr1_3:56272272-56272291 None:intergenic 65.0%
CGGTACCGCTGTGGGATCAC+AGG + chr1_3:56276943-56276962 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 56270860 56278187 56270860 ID=Msa0127060;Name=Msa0127060
chr1_3 mRNA 56270860 56278187 56270860 ID=Msa0127060-mRNA-1;Parent=Msa0127060;Name=Msa0127060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=125|0.75|0.84|1|0.83|0.76|13|198|476
chr1_3 exon 56270860 56271189 56270860 ID=Msa0127060-mRNA-1:exon:17690;Parent=Msa0127060-mRNA-1
chr1_3 exon 56271273 56271366 56271273 ID=Msa0127060-mRNA-1:exon:17689;Parent=Msa0127060-mRNA-1
chr1_3 exon 56271447 56271544 56271447 ID=Msa0127060-mRNA-1:exon:17688;Parent=Msa0127060-mRNA-1
chr1_3 exon 56272411 56272519 56272411 ID=Msa0127060-mRNA-1:exon:17687;Parent=Msa0127060-mRNA-1
chr1_3 exon 56272989 56273064 56272989 ID=Msa0127060-mRNA-1:exon:17686;Parent=Msa0127060-mRNA-1
chr1_3 exon 56273919 56274037 56273919 ID=Msa0127060-mRNA-1:exon:17685;Parent=Msa0127060-mRNA-1
chr1_3 exon 56274351 56274419 56274351 ID=Msa0127060-mRNA-1:exon:17684;Parent=Msa0127060-mRNA-1
chr1_3 exon 56275179 56275387 56275179 ID=Msa0127060-mRNA-1:exon:17683;Parent=Msa0127060-mRNA-1
chr1_3 exon 56275496 56275578 56275496 ID=Msa0127060-mRNA-1:exon:17682;Parent=Msa0127060-mRNA-1
chr1_3 exon 56276621 56276770 56276621 ID=Msa0127060-mRNA-1:exon:17681;Parent=Msa0127060-mRNA-1
chr1_3 exon 56277681 56277786 56277681 ID=Msa0127060-mRNA-1:exon:17680;Parent=Msa0127060-mRNA-1
chr1_3 exon 56277804 56277917 56277804 ID=Msa0127060-mRNA-1:exon:17679;Parent=Msa0127060-mRNA-1
chr1_3 exon 56277991 56278187 56277991 ID=Msa0127060-mRNA-1:exon:17678;Parent=Msa0127060-mRNA-1
chr1_3 five_prime_UTR 56278063 56278187 56278063 ID=Msa0127060-mRNA-1:five_prime_utr;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56277991 56278062 56277991 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56277804 56277917 56277804 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56277681 56277786 56277681 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56276621 56276770 56276621 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56275496 56275578 56275496 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56275179 56275387 56275179 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56274351 56274419 56274351 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56273919 56274037 56273919 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56272989 56273064 56272989 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56272411 56272519 56272411 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56271447 56271544 56271447 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56271273 56271366 56271273 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 CDS 56271058 56271189 56271058 ID=Msa0127060-mRNA-1:cds;Parent=Msa0127060-mRNA-1
chr1_3 three_prime_UTR 56270860 56271057 56270860 ID=Msa0127060-mRNA-1:three_prime_utr;Parent=Msa0127060-mRNA-1
Gene Sequence

>Msa0127060

ATGGAGATCATTGCTAGCTCTGTAATCAATCCTTCTTTCCCTCTTCGTTACCCAACAATCTCCGTTTTTCAGGTTTCAAACTGGAACTGTTTTTCCGTAGTAGAATCAAGGTTTTCATTTTCACTCACACATAAGAGGAAGAAAGTTACTAAATTTTCAATTGGGGTGGTGCCAAAAGTAAACAACTTGGAGTTTCCTTCGCAGAAGGAGGAAATGGAACAAGGATTCTTCTGTGAAGCATGCTTCTTTACTGTTTGTGCGGTTGGTTGCTGGAGTTATGTTGGTTGTGTCGGGGCCCTGACGGAAGAGAATCTCCTCTTTCTGGAGGCGTGGAGAACAATTGACCGAGCATATATCGACAAGAATTTTAATGGACAGAGTTGGTTTAGGTATAGAGAAAATGCATTGCGCAACGAACCCATGAACAACCGTGAAGAGACATATATGGCGATAAGAAAGATGCTTGCCACATTGGATGATCCCTTCACTAGATTTTTAGAGCCTGAGAAGTTCAGAAGTTTGAGGTCTGGAACTAAAGGCGCTCTAACTGGAGTGGGGATATCAATAGGCTACCCTACCAAAGCAGACATGCCATCCGATGGACTTGTTGTCATTTCAGCTTCTCCAGGAGGTCCTGCATATAGAGCTGGTGTTTTGTCTGGAGATGTTATCCTGGCCATTGATGATATGAGCACAGAAAAGTTGGGTCTGTATGATGCAGCTGAACGCCTACAAGGACCTGATGGAAGCTCTGTTGCATTGACCATACGTAGTGGTTCTGACGTAAAGCACCTAGCTCTAACGCGAGAGAAAGTTACAGTCAATCCAGTGAAGTCAAGACTGTGCAAGTTACCTGCTGCAGGAAATAATTCCCCAACAGTTGGTTATATAAAATTAACATCGTTCAACCAAAATGCATCTCGTGCTATCAAAGAAGCAATCAATACGTTCAGGAGTAATAATGTAAATGCATTTGTTTTGGACCTCAGAGATAATAGGTTGGACAAAGGTGTGATTGTGTATATTTGTGATAGTCGTGGGGTTCGAGATATACTGGATACAGATGGAAGTAGTGCCCTAGCAACTTCTGAACCTCTGGCTGTGCTGGTAAACAAGGGAACTGCAAGTGCCAGCGAAATATTAGCCGGTGCATTGAAAGATAACAAGCGGGCCATATTGTACGGAGAGCCAACATTTGGAAAGGGGAAGATCCAATCAGTATTTGAGCTCTCAGATGGCTCAGGACTAGTTGTTACAGTTGCTCGCTACGAGACACCTGCGCACACAGATATTGACAAGGTTGGTGTCATTCCTGACCATCCTCTACCAACATCATTTCCTAAGGATGAAGATGCATTTTGCAATTGCCTGCAGGATCCTGCTTCTTCGTGTAATAATAATAATAACAGGGTCCAGTTATTTTCAAAATGA

Protein sequence

>Msa0127060

MEIIASSVINPSFPLRYPTISVFQVSNWNCFSVVESRFSFSLTHKRKKVTKFSIGVVPKVNNLEFPSQKEEMEQGFFCEACFFTVCAVGCWSYVGCVGALTEENLLFLEAWRTIDRAYIDKNFNGQSWFRYRENALRNEPMNNREETYMAIRKMLATLDDPFTRFLEPEKFRSLRSGTKGALTGVGISIGYPTKADMPSDGLVVISASPGGPAYRAGVLSGDVILAIDDMSTEKLGLYDAAERLQGPDGSSVALTIRSGSDVKHLALTREKVTVNPVKSRLCKLPAAGNNSPTVGYIKLTSFNQNASRAIKEAINTFRSNNVNAFVLDLRDNRLDKGVIVYICDSRGVRDILDTDGSSALATSEPLAVLVNKGTASASEILAGALKDNKRAILYGEPTFGKGKIQSVFELSDGSGLVVTVARYETPAHTDIDKVGVIPDHPLPTSFPKDEDAFCNCLQDPASSCNNNNNRVQLFSK*