AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389570 MtrunA17_Chr1g0171581 81.046 153 23 3 1 147 1 153 1.07e-78 239
Msa0389570 MtrunA17_Chr1g0171581 81.081 111 0 2 199 308 137 227 9.63e-51 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389570 AT5G04440.2 58.865 141 47 4 34 163 63 203 7.96e-47 158
Msa0389570 AT5G04440.2 65.672 67 23 0 199 265 166 232 3.48e-22 93.6
Msa0389570 AT5G04440.1 58.865 141 47 4 34 163 63 203 1.57e-46 157
Msa0389570 AT5G04440.1 57.273 110 27 1 199 308 166 255 1.36e-33 124

Find 92 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCACCAGCCCAGGCTAGC+TGG 0.183069 3_1:-94511290 None:intergenic
GGCACCAGCCCAGGCTAGCT+GGG 0.279409 3_1:-94511289 None:intergenic
GCTAGCCTGGGCTGGTGCCC+AGG 0.322834 3_1:+94511293 Msa0389570:CDS
GCTGATTCAATTGCTTGCTT+TGG 0.335311 3_1:-94512224 None:intergenic
TCAGATTACATAACCATAAC+TGG 0.343782 3_1:-94515730 None:intergenic
AACACTGAATATTGACTTGC+TGG 0.347727 3_1:-94510956 None:intergenic
AACAAACCTGTGACATAAAA+CGG 0.350906 3_1:-94512289 None:intergenic
GATTATCAAGCCTGGGCCTC+TGG 0.362325 3_1:+94515454 Msa0389570:CDS
TGATTATGATATTCCAGTTA+TGG 0.362872 3_1:+94515717 Msa0389570:three_prime_UTR
TCCAACTTCCCTTTGTAGTC+AGG 0.370648 3_1:+94511322 Msa0389570:CDS
CAAGAAGTGGAAGGCGTTGT+TGG 0.383157 3_1:-94510735 None:intergenic
CTGAGCCTGGGCACCAGCCC+AGG 0.384624 3_1:-94511298 None:intergenic
AAAGTAGGTACCTACCTTGC+AGG 0.389681 3_1:-94511122 None:intergenic
TGTGTGCATGGATTAATTAT+TGG 0.391776 3_1:+94515601 Msa0389570:three_prime_UTR
ACAAACCTGTGACATAAAAC+GGG 0.400266 3_1:-94512288 None:intergenic
AGGGAAGTTGGAGCTGAGCC+TGG 0.416888 3_1:-94511311 None:intergenic
TCAACTTTGACAAGCAAAAC+AGG 0.418135 3_1:-94511064 None:intergenic
AATTGGGATGGCTTCGTCAT+TGG 0.418577 3_1:+94510669 None:intergenic
GAGTTGATGACAACGTGAAA+TGG 0.422343 3_1:-94510713 None:intergenic
GAGCTTAATGCAACAGCCAT+TGG 0.425284 3_1:-94511095 None:intergenic
ATGTGGTAATGCAGCTATAA+TGG 0.425880 3_1:+94511999 Msa0389570:intron
TAATCTTGAGTATTTGTTCA+AGG 0.430233 3_1:-94512259 None:intergenic
TGAGGCATTTCCAGAGGCCC+AGG 0.437530 3_1:-94515464 None:intergenic
AAGCAAGCAATTGAATCAGC+TGG 0.447176 3_1:+94512227 Msa0389570:CDS
AGTCACTTTCACACGATATC+CGG 0.455952 3_1:-94512026 None:intergenic
AGCAACGAAACGGGCTTTGT+GGG 0.456712 3_1:-94510779 None:intergenic
GCTCAGAACGACAAGTTTGA+TGG 0.461254 3_1:+94511233 Msa0389570:CDS
CGTTCTGAGCAGCGACCATA+GGG 0.461288 3_1:-94511220 None:intergenic
AACCGTGGTTGCACTGGTGC+TGG 0.461802 3_1:+94515527 Msa0389570:three_prime_UTR
ATGCCTCAAGGCAACCTCTT+GGG 0.464009 3_1:+94515479 Msa0389570:CDS
AGCTTAATGCAACAGCCATT+GGG 0.464658 3_1:-94511094 None:intergenic
ACCAGCCCAGGCTAGCTGGG+GGG 0.467223 3_1:-94511286 None:intergenic
GCACCAGCCCAGGCTAGCTG+GGG 0.468410 3_1:-94511288 None:intergenic
GAGCAACGAAACGGGCTTTG+TGG 0.479564 3_1:-94510780 None:intergenic
CTTACGGCGAGCAACGAAAC+GGG 0.479910 3_1:-94510788 None:intergenic
CACCAGCCCAGGCTAGCTGG+GGG 0.485147 3_1:-94511287 None:intergenic
TCGTTCTGAGCAGCGACCAT+AGG 0.486521 3_1:-94511221 None:intergenic
CTCAAAGTTGTAGTAATGGC+TGG 0.487166 3_1:-94511345 None:intergenic
AATGCCTCAAGGCAACCTCT+TGG 0.493109 3_1:+94515478 Msa0389570:CDS
GCCTGACTACAAAGGGAAGT+TGG 0.495036 3_1:-94511323 None:intergenic
CTCTGTACATTGGTGATAGT+TGG 0.495607 3_1:+94515789 Msa0389570:three_prime_UTR
TTGTGAAAGATTATCAAGCC+TGG 0.500950 3_1:+94515446 Msa0389570:CDS
ATGCAGCTATAATGGTGAAC+CGG 0.501075 3_1:+94512007 Msa0389570:intron
TGAAATGGGTTGAACAAGAA+TGG 0.501639 3_1:-94510698 None:intergenic
CCGTTTCGTTGCTCGCCGTA+AGG 0.506017 3_1:+94510789 Msa0389570:CDS
GAACAGAAACAGACTCCTTA+CGG 0.507973 3_1:-94510804 None:intergenic
AGTAGTATTGTTTGCAGTGG+CGG 0.508635 3_1:+94511258 Msa0389570:CDS
TAGGACAAATCGATAGCGTA+AGG 0.510309 3_1:+94515662 Msa0389570:three_prime_UTR
GGTATTGCTTTGAAAGCGAA+AGG 0.511262 3_1:-94512203 None:intergenic
CCTTACGGCGAGCAACGAAA+CGG 0.521735 3_1:-94510789 None:intergenic
TACAGCTTCAGGTTCCCCTA+TGG 0.523297 3_1:+94511205 Msa0389570:intron
ATAAGTAACCGTGGTTGCAC+TGG 0.523590 3_1:+94515521 Msa0389570:three_prime_UTR
TCAAGGCAACCTCTTGGGAC+AGG 0.526109 3_1:+94515484 Msa0389570:CDS
ATGGCTGGCCTGACTACAAA+GGG 0.529019 3_1:-94511330 None:intergenic
CACATCAGACACTATAATTG+AGG 0.533833 3_1:+94512074 Msa0389570:CDS
GTGTGAGTGAGGATACATTC+AGG 0.534369 3_1:+94510999 Msa0389570:CDS
AAAGCTCAAAGTTGTAGTAA+TGG 0.535973 3_1:-94511349 None:intergenic
ATTCAGTGTTGGACGCTGAA+AGG 0.542698 3_1:+94510969 Msa0389570:CDS
AAATCCTTGACAAAATCTGC+AGG 0.544592 3_1:-94511426 None:intergenic
TGCTGCTTGTAGTGTGTGCA+TGG 0.548904 3_1:+94515589 Msa0389570:three_prime_UTR
AGTTGATGACAACGTGAAAT+GGG 0.550183 3_1:-94510712 None:intergenic
GTCAGTAGTATTGTTTGCAG+TGG 0.552167 3_1:+94511255 Msa0389570:CDS
TTGCCTTGAGGCATTTCCAG+AGG 0.558238 3_1:-94515470 None:intergenic
AGCAAGCAATTGAATCAGCT+GGG 0.564610 3_1:+94512228 Msa0389570:CDS
GGGCCTCTGGAAATGCCTCA+AGG 0.565504 3_1:+94515467 Msa0389570:CDS
AGTAGCGGTAGCCAGAGTTA+TGG 0.565527 3_1:+94515323 Msa0389570:CDS
TGTGAAAGATTATCAAGCCT+GGG 0.569096 3_1:+94515447 Msa0389570:CDS
CATTAAGCTCTTATCCTGCA+AGG 0.575460 3_1:+94511108 Msa0389570:CDS
GGGAAGTTGGAGCTGAGCCT+GGG 0.581145 3_1:-94511310 None:intergenic
CAGATTTCACCTGTCCCAAG+AGG 0.585810 3_1:-94515493 None:intergenic
AAACGGGCTTTGTGGGTCGA+AGG 0.589377 3_1:-94510772 None:intergenic
AGGACAAATCGATAGCGTAA+GGG 0.589690 3_1:+94515663 Msa0389570:three_prime_UTR
GGACAAATCGATAGCGTAAG+GGG 0.590710 3_1:+94515664 Msa0389570:three_prime_UTR
GGAGTTGCTGAAGCAAGAAG+TGG 0.592610 3_1:-94510748 None:intergenic
CTATTGTAGAACCATAACTC+TGG 0.592845 3_1:-94515334 None:intergenic
GATTCACAAACTCTGTACAT+TGG 0.593215 3_1:+94515779 Msa0389570:three_prime_UTR
AAATCCGCAGGTAAATCCGC+AGG 0.594566 3_1:-94511373 None:intergenic
CGGGCTTTGTGGGTCGAAGG+AGG 0.597317 3_1:-94510769 None:intergenic
AGCAAGTCAATATTCAGTGT+TGG 0.598943 3_1:+94510958 Msa0389570:CDS
AATGGCTGGCCTGACTACAA+AGG 0.601443 3_1:-94511331 None:intergenic
AAGTGACTCAGATAAGTCAC+TGG 0.624597 3_1:+94512041 Msa0389570:CDS
AGCCAGCACCAGTGCAACCA+CGG 0.629709 3_1:-94515529 None:intergenic
TGCAGGAAATGTGTTTCCTG+CGG 0.646215 3_1:-94511409 None:intergenic
TTGCTGAAGCAAGAAGTGGA+AGG 0.666859 3_1:-94510744 None:intergenic
AAAGTTGAACAACAACCCAA+TGG 0.669566 3_1:+94511079 Msa0389570:CDS
TCTGAAATAATAAGTAACCG+TGG 0.682131 3_1:+94515512 Msa0389570:exon
CAAACCTGTGACATAAAACG+GGG 0.689169 3_1:-94512287 None:intergenic
GACAAATCGATAGCGTAAGG+GGG 0.689226 3_1:+94515665 Msa0389570:three_prime_UTR
ATACTTGCTGACTACAGTAG+CGG 0.689557 3_1:+94515308 Msa0389570:CDS
TGTCCCAAGAGGTTGCCTTG+AGG 0.701420 3_1:-94515482 None:intergenic
AAGGATTGAACGTGTGAGTG+AGG 0.702772 3_1:+94510988 Msa0389570:CDS
GTTCTGAGCAGCGACCATAG+GGG 0.776434 3_1:-94511219 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATACAATTTTTTGTA+TGG - chr3_1:94513930-94513949 None:intergenic 10.0%
!!! AAGTACATGATATTTTAAAT+GGG - chr3_1:94513072-94513091 None:intergenic 15.0%
!!! AAAGTACATGATATTTTAAA+TGG - chr3_1:94513073-94513092 None:intergenic 15.0%
!!! TCAAATTTTTATACATATAC+TGG - chr3_1:94513377-94513396 None:intergenic 15.0%
!! TTTATATACAGTCATATAAA+AGG - chr3_1:94514621-94514640 None:intergenic 15.0%
!! TCTCTAGTAATAAATTATTA+TGG - chr3_1:94514771-94514790 None:intergenic 15.0%
!! AATAATTTATTACTAGAGAT+AGG + chr3_1:94514772-94514791 Msa0389570:intron 15.0%
!!! TTTGAAAATTTTATGACAAT+TGG - chr3_1:94514832-94514851 None:intergenic 15.0%
!!! TTTTTTCTATATAAAATCCA+AGG - chr3_1:94514868-94514887 None:intergenic 15.0%
!!! TTTTAATAATAAGTTTTCCT+AGG - chr3_1:94514895-94514914 None:intergenic 15.0%
!!! TTGATAATACTACTTACTTA+GGG - chr3_1:94510844-94510863 None:intergenic 20.0%
!!! AATTAAGTTTTTCACATTTG+AGG + chr3_1:94511036-94511055 Msa0389570:CDS 20.0%
!! GATTTAATGATAAGTAAAGT+AGG - chr3_1:94511140-94511159 None:intergenic 20.0%
!! AGAAAACAAGAAATAAGAAA+GGG - chr3_1:94511180-94511199 None:intergenic 20.0%
!! AAGAAAACAAGAAATAAGAA+AGG - chr3_1:94511181-94511200 None:intergenic 20.0%
!! AATCTCTATTCATGAATATA+GGG - chr3_1:94512435-94512454 None:intergenic 20.0%
!! TAATCTCTATTCATGAATAT+AGG - chr3_1:94512436-94512455 None:intergenic 20.0%
!! ATAAAGACTTTCATCAAATT+CGG + chr3_1:94512654-94512673 Msa0389570:intron 20.0%
!!! AGTACATGATATTTTAAATG+GGG - chr3_1:94513071-94513090 None:intergenic 20.0%
!!! TAACTATCTTACTTTTAAAG+AGG - chr3_1:94513162-94513181 None:intergenic 20.0%
!!! TTTATGCTGATTATATTTCA+TGG - chr3_1:94513266-94513285 None:intergenic 20.0%
!!! ATTTATCAATCTTTTGTAGT+TGG - chr3_1:94513333-94513352 None:intergenic 20.0%
!! CTAATGGTTTAAACTTTAAA+TGG + chr3_1:94513645-94513664 Msa0389570:intron 20.0%
!!! CACAAATACGTATATAATTT+TGG + chr3_1:94513771-94513790 Msa0389570:intron 20.0%
!! TGTATAATAACTGATAAAAC+AGG + chr3_1:94513940-94513959 Msa0389570:intron 20.0%
!! ATCAACAAAATTATGTACAT+TGG - chr3_1:94513993-94514012 None:intergenic 20.0%
!!! GATTATGTTATTTTAAAGGT+TGG - chr3_1:94514347-94514366 None:intergenic 20.0%
!!! ACCTTTAAAATAACATAATC+TGG + chr3_1:94514347-94514366 Msa0389570:intron 20.0%
!!! CCTTTAAAATAACATAATCT+GGG + chr3_1:94514348-94514367 Msa0389570:intron 20.0%
!!! AAATTTTGAGTATTTGTTCA+AGG - chr3_1:94514479-94514498 None:intergenic 20.0%
!! TGAACAAATACTCAAAATTT+AGG + chr3_1:94514479-94514498 Msa0389570:intron 20.0%
!!! TATTATGGATTTCACATTTT+AGG - chr3_1:94514756-94514775 None:intergenic 20.0%
!! TATATAGAAAAAATCATCCT+AGG + chr3_1:94514875-94514894 Msa0389570:intron 20.0%
!! TAAAAGACCAATGAAATAAA+AGG - chr3_1:94515264-94515283 None:intergenic 20.0%
!!! TGAAGTTTTGTACTAATTTT+AGG + chr3_1:94515370-94515389 Msa0389570:intron 20.0%
!!! TAGTTTTTTCTGATTCTTTT+AGG + chr3_1:94515643-94515662 Msa0389570:three_prime_UTR 20.0%
!! CTTGATAATACTACTTACTT+AGG - chr3_1:94510845-94510864 None:intergenic 25.0%
! AAGGGTGAAAAAGAAAATAT+GGG - chr3_1:94511162-94511181 None:intergenic 25.0%
! AAAGGGTGAAAAAGAAAATA+TGG - chr3_1:94511163-94511182 None:intergenic 25.0%
! ACGGTGATTTCAAAATTATA+TGG + chr3_1:94511843-94511862 Msa0389570:intron 25.0%
! GTCATTTCAATACTTTAATG+TGG + chr3_1:94511982-94512001 Msa0389570:intron 25.0%
! TAAAATTCAGAAGAAAACGA+TGG - chr3_1:94512118-94512137 None:intergenic 25.0%
! TAATCTTGAGTATTTGTTCA+AGG - chr3_1:94512262-94512281 None:intergenic 25.0%
! TTTGTATGAAATAAGCTGTA+AGG + chr3_1:94512360-94512379 Msa0389570:intron 25.0%
! TTGTATGAAATAAGCTGTAA+GGG + chr3_1:94512361-94512380 Msa0389570:intron 25.0%
! TTCATGAATAGAGATTAACA+CGG + chr3_1:94512439-94512458 Msa0389570:intron 25.0%
! CTATAAATTGTTCTGTTCTT+TGG - chr3_1:94512551-94512570 None:intergenic 25.0%
! AGAACAGAACAATTTATAGA+AGG + chr3_1:94512552-94512571 Msa0389570:intron 25.0%
! GAACAGAACAATTTATAGAA+GGG + chr3_1:94512553-94512572 Msa0389570:intron 25.0%
! CTTAACATAAGACCAAAAAA+GGG + chr3_1:94512876-94512895 Msa0389570:intron 25.0%
!! CTTTGATTAATTGTGTGTTT+TGG - chr3_1:94513018-94513037 None:intergenic 25.0%
! CTGATTATATTTCATGGATA+TGG - chr3_1:94513260-94513279 None:intergenic 25.0%
! ATAAATGTGTTTATGTGTCA+AGG + chr3_1:94513281-94513300 Msa0389570:intron 25.0%
! TGTACTACATTCTAATCTAA+TGG + chr3_1:94513629-94513648 Msa0389570:intron 25.0%
! ACAATAAAGACTGTCATATT+TGG - chr3_1:94513672-94513691 None:intergenic 25.0%
! AAGTAATGACTTCATAGATA+TGG - chr3_1:94513695-94513714 None:intergenic 25.0%
! AAACAGGATTACTCTATAAA+TGG + chr3_1:94513956-94513975 Msa0389570:intron 25.0%
! TTATGTAGGATAAATAGCTT+TGG - chr3_1:94514031-94514050 None:intergenic 25.0%
! CATCAACATAATTTATAGTG+AGG - chr3_1:94514104-94514123 None:intergenic 25.0%
!!! TAAGTTTTATTGTTCTTTCC+AGG - chr3_1:94514202-94514221 None:intergenic 25.0%
!!! CCCAGATTATGTTATTTTAA+AGG - chr3_1:94514351-94514370 None:intergenic 25.0%
! AGTTTAAAAGTCACATTTCT+TGG + chr3_1:94514584-94514603 Msa0389570:intron 25.0%
! GTTTAAAAGTCACATTTCTT+GGG + chr3_1:94514585-94514604 Msa0389570:intron 25.0%
! CAAATACTCTATAATATCCT+TGG + chr3_1:94514848-94514867 Msa0389570:intron 25.0%
! AAACATTGCAACATGTAATA+TGG - chr3_1:94514930-94514949 None:intergenic 25.0%
! CTGTTTATTAGGTAAATGTA+TGG + chr3_1:94515103-94515122 Msa0389570:intron 25.0%
! TGATTATGATATTCCAGTTA+TGG + chr3_1:94515717-94515736 Msa0389570:three_prime_UTR 25.0%
! TTTTCTTACATTACAGCTTC+AGG + chr3_1:94511194-94511213 Msa0389570:intron 30.0%
AAAGCTCAAAGTTGTAGTAA+TGG - chr3_1:94511352-94511371 None:intergenic 30.0%
! CAAAATTTTTACCAAAGCCT+GGG - chr3_1:94511474-94511493 None:intergenic 30.0%
! TCTTGTTACTTATCGAATCT+CGG + chr3_1:94511579-94511598 Msa0389570:intron 30.0%
! GATGACTTGTATTATAAAGC+TGG + chr3_1:94511623-94511642 Msa0389570:intron 30.0%
TACAAAAAGGGTAGATGAAA+TGG + chr3_1:94511757-94511776 Msa0389570:intron 30.0%
AGTAAATGTGAATGTAGCTA+AGG + chr3_1:94511814-94511833 Msa0389570:intron 30.0%
AAGGGAAAAAGGAAATTTGT+AGG + chr3_1:94511921-94511940 Msa0389570:intron 30.0%
!! ATTTGATTCATGCTACTTTC+AGG + chr3_1:94511956-94511975 Msa0389570:intron 30.0%
AACAAACCTGTGACATAAAA+CGG - chr3_1:94512292-94512311 None:intergenic 30.0%
TCATGAATAGAGATTAACAC+GGG + chr3_1:94512440-94512459 Msa0389570:intron 30.0%
TAGTACAATGATGAGTACAA+AGG + chr3_1:94512493-94512512 Msa0389570:intron 30.0%
AGTACAAAGGAACAAATGAT+TGG + chr3_1:94512506-94512525 Msa0389570:intron 30.0%
GTACAAAGGAACAAATGATT+GGG + chr3_1:94512507-94512526 Msa0389570:intron 30.0%
TGGTATATAATAGCAGTGTA+AGG - chr3_1:94512696-94512715 None:intergenic 30.0%
GTTAGTTGTAACAAAGAGAT+TGG - chr3_1:94512761-94512780 None:intergenic 30.0%
TACAACTAACTTTCATGATG+TGG + chr3_1:94512771-94512790 Msa0389570:intron 30.0%
TGACGAAGAACAAATTACAA+AGG + chr3_1:94512832-94512851 Msa0389570:intron 30.0%
GACGAAGAACAAATTACAAA+GGG + chr3_1:94512833-94512852 Msa0389570:intron 30.0%
!!! TTTTTGGTCTTATGTTAAGG+AGG - chr3_1:94512875-94512894 None:intergenic 30.0%
!!! CCTTTTTTGGTCTTATGTTA+AGG - chr3_1:94512878-94512897 None:intergenic 30.0%
CCTTAACATAAGACCAAAAA+AGG + chr3_1:94512875-94512894 Msa0389570:intron 30.0%
! GAGCTTTAGTGTATAAAAGA+GGG - chr3_1:94512980-94512999 None:intergenic 30.0%
!!! TGTTTTGGTCTTATGTTAAG+GGG - chr3_1:94513003-94513022 None:intergenic 30.0%
!!! GTGTTTTGGTCTTATGTTAA+GGG - chr3_1:94513004-94513023 None:intergenic 30.0%
!!! TGTGTTTTGGTCTTATGTTA+AGG - chr3_1:94513005-94513024 None:intergenic 30.0%
AAACAGATATCTCAAGGATT+AGG - chr3_1:94513044-94513063 None:intergenic 30.0%
TAATCCTTGAGATATCTGTT+TGG + chr3_1:94513043-94513062 Msa0389570:intron 30.0%
!!! TCTCACTTTTGGCTTATATT+TGG - chr3_1:94513099-94513118 None:intergenic 30.0%
! GTTGGAGTAAAAGTTGATTT+GGG - chr3_1:94513135-94513154 None:intergenic 30.0%
! TGTTGGAGTAAAAGTTGATT+TGG - chr3_1:94513136-94513155 None:intergenic 30.0%
!! TACTTTTAAAGAGGTCTTGT+TGG - chr3_1:94513153-94513172 None:intergenic 30.0%
ATGGATATGGTTGAGTAAAT+AGG - chr3_1:94513247-94513266 None:intergenic 30.0%
TTTGAATGTTTACACACATG+AGG + chr3_1:94513392-94513411 Msa0389570:intron 30.0%
TTGAATGTTTACACACATGA+GGG + chr3_1:94513393-94513412 Msa0389570:intron 30.0%
GAAGAAAAAGATAGTCCTAT+AGG - chr3_1:94513606-94513625 None:intergenic 30.0%
ACATGATGACTTTATGAGAT+AGG - chr3_1:94514081-94514100 None:intergenic 30.0%
!!! TTTTCAGGTTTAACATGTCA+TGG - chr3_1:94514268-94514287 None:intergenic 30.0%
! TTAAACCTGAAAAGTTTTGC+AGG + chr3_1:94514275-94514294 Msa0389570:intron 30.0%
! TAAACCTGAAAAGTTTTGCA+GGG + chr3_1:94514276-94514295 Msa0389570:intron 30.0%
TGACTGTATATAAATTGCGT+AGG + chr3_1:94514627-94514646 Msa0389570:intron 30.0%
GACTGTATATAAATTGCGTA+GGG + chr3_1:94514628-94514647 Msa0389570:intron 30.0%
TATTACTAGAGATAGGTGTT+TGG + chr3_1:94514779-94514798 Msa0389570:intron 30.0%
TGCAACATGTAATATGGTAT+TGG - chr3_1:94514924-94514943 None:intergenic 30.0%
!! GAGTTCACCTTTTATTTCAT+TGG + chr3_1:94515254-94515273 Msa0389570:intron 30.0%
! TCTGAAATAATAAGTAACCG+TGG + chr3_1:94515512-94515531 Msa0389570:exon 30.0%
! TGTGTGCATGGATTAATTAT+TGG + chr3_1:94515601-94515620 Msa0389570:three_prime_UTR 30.0%
TCAGATTACATAACCATAAC+TGG - chr3_1:94515733-94515752 None:intergenic 30.0%
!! TGAAATGGGTTGAACAAGAA+TGG - chr3_1:94510701-94510720 None:intergenic 35.0%
!! AGTTGATGACAACGTGAAAT+GGG - chr3_1:94510715-94510734 None:intergenic 35.0%
ACAAGTAGCATTCATTGCTT+TGG - chr3_1:94510871-94510890 None:intergenic 35.0%
!! AACACTGAATATTGACTTGC+TGG - chr3_1:94510959-94510978 None:intergenic 35.0%
AGCAAGTCAATATTCAGTGT+TGG + chr3_1:94510958-94510977 Msa0389570:CDS 35.0%
TCAACTTTGACAAGCAAAAC+AGG - chr3_1:94511067-94511086 None:intergenic 35.0%
AAAGTTGAACAACAACCCAA+TGG + chr3_1:94511079-94511098 Msa0389570:CDS 35.0%
!!! GATTTACCTGCGGATTTTTT+GGG + chr3_1:94511379-94511398 Msa0389570:CDS 35.0%
! ATTTCCTGCAGATTTTGTCA+AGG + chr3_1:94511422-94511441 Msa0389570:CDS 35.0%
AAATCCTTGACAAAATCTGC+AGG - chr3_1:94511429-94511448 None:intergenic 35.0%
! GCAGATTTTGTCAAGGATTT+AGG + chr3_1:94511429-94511448 Msa0389570:CDS 35.0%
! GCAAAATTTTTACCAAAGCC+TGG - chr3_1:94511475-94511494 None:intergenic 35.0%
ATTTAGCAAACAATCAGTGG+CGG - chr3_1:94511558-94511577 None:intergenic 35.0%
GAGATTTAGCAAACAATCAG+TGG - chr3_1:94511561-94511580 None:intergenic 35.0%
TCAAGGAAAACATGCAGTAA+GGG - chr3_1:94511700-94511719 None:intergenic 35.0%
! CATGTTTTCCTTGACTGTTA+CGG + chr3_1:94511706-94511725 Msa0389570:intron 35.0%
AATGTGAATGTAGCTAAGGA+TGG + chr3_1:94511818-94511837 Msa0389570:intron 35.0%
AATGTAGCTAAGGATGGTTA+CGG + chr3_1:94511824-94511843 Msa0389570:intron 35.0%
TACTTCTTGAGTAAACATGG+AGG - chr3_1:94511872-94511891 None:intergenic 35.0%
CTCTACTTCTTGAGTAAACA+TGG - chr3_1:94511875-94511894 None:intergenic 35.0%
CATGTTTACTCAAGAAGTAG+AGG + chr3_1:94511873-94511892 Msa0389570:intron 35.0%
! CTTTTTCCCTTTCTCAGAAA+GGG - chr3_1:94511912-94511931 None:intergenic 35.0%
! ATGTGGTAATGCAGCTATAA+TGG + chr3_1:94511999-94512018 Msa0389570:intron 35.0%
CACATCAGACACTATAATTG+AGG + chr3_1:94512074-94512093 Msa0389570:CDS 35.0%
ATCAGACACTATAATTGAGG+TGG + chr3_1:94512077-94512096 Msa0389570:intron 35.0%
ACAAACCTGTGACATAAAAC+GGG - chr3_1:94512291-94512310 None:intergenic 35.0%
TGAAATAAGCTGTAAGGGTT+TGG + chr3_1:94512366-94512385 Msa0389570:intron 35.0%
ATAGAGATTAACACGGGTAA+TGG + chr3_1:94512446-94512465 Msa0389570:intron 35.0%
CTCATCATTGTACTAGTGAA+AGG - chr3_1:94512488-94512507 None:intergenic 35.0%
! AAGTCTTTATTTCCTCCCTT+TGG - chr3_1:94512644-94512663 None:intergenic 35.0%
ACAAAGAGATTGGAATCACA+TGG - chr3_1:94512751-94512770 None:intergenic 35.0%
GAACAAATTACAAAGGGTAG+AGG + chr3_1:94512839-94512858 Msa0389570:intron 35.0%
TTAGTGTATAAAAGAGGGCA+AGG - chr3_1:94512975-94512994 None:intergenic 35.0%
! GGAGCTTTAGTGTATAAAAG+AGG - chr3_1:94512981-94513000 None:intergenic 35.0%
!!! GTTTTGGTCTTATGTTAAGG+GGG - chr3_1:94513002-94513021 None:intergenic 35.0%
! TTTGTAGTTGGCAATTTTGC+TGG - chr3_1:94513321-94513340 None:intergenic 35.0%
! GGTCAGTATTTTATGTTCCA+GGG - chr3_1:94513731-94513750 None:intergenic 35.0%
! TGGTCAGTATTTTATGTTCC+AGG - chr3_1:94513732-94513751 None:intergenic 35.0%
GGAACATAAAATACTGACCA+AGG + chr3_1:94513732-94513751 Msa0389570:intron 35.0%
GATTGAAACGAAATCAACCT+TGG - chr3_1:94513752-94513771 None:intergenic 35.0%
!!! ATTTTAGCTGCAATCGTGAT+AGG + chr3_1:94513838-94513857 Msa0389570:intron 35.0%
AGGTGAAGTCAGATTTATGT+AGG - chr3_1:94514045-94514064 None:intergenic 35.0%
ACTAGTAGAAAGATTCAGCT+GGG + chr3_1:94514445-94514464 Msa0389570:intron 35.0%
! GTCAGCTTTTACACAAATAC+TGG + chr3_1:94514527-94514546 Msa0389570:intron 35.0%
ACTCTTATCTAGATCATGAG+AGG + chr3_1:94514986-94515005 Msa0389570:intron 35.0%
TTATCTAGATCATGAGAGGA+TGG + chr3_1:94514990-94515009 Msa0389570:intron 35.0%
TATCTAGATCATGAGAGGAT+GGG + chr3_1:94514991-94515010 Msa0389570:intron 35.0%
GAAATTGTAACAAACTGTCC+AGG + chr3_1:94515016-94515035 Msa0389570:intron 35.0%
GAATATGTGAGGGTTAATAG+TGG + chr3_1:94515059-94515078 Msa0389570:intron 35.0%
CTATTGTAGAACCATAACTC+TGG - chr3_1:94515337-94515356 None:intergenic 35.0%
TTGTGAAAGATTATCAAGCC+TGG + chr3_1:94515446-94515465 Msa0389570:CDS 35.0%
TGTGAAAGATTATCAAGCCT+GGG + chr3_1:94515447-94515466 Msa0389570:CDS 35.0%
GATTCACAAACTCTGTACAT+TGG + chr3_1:94515779-94515798 Msa0389570:three_prime_UTR 35.0%
!! GAGTTGATGACAACGTGAAA+TGG - chr3_1:94510716-94510735 None:intergenic 40.0%
GAACAGAAACAGACTCCTTA+CGG - chr3_1:94510807-94510826 None:intergenic 40.0%
TACTACTTACTTAGGGACGT+TGG - chr3_1:94510837-94510856 None:intergenic 40.0%
AGCTTAATGCAACAGCCATT+GGG - chr3_1:94511097-94511116 None:intergenic 40.0%
CATTAAGCTCTTATCCTGCA+AGG + chr3_1:94511108-94511127 Msa0389570:CDS 40.0%
GTCAGTAGTATTGTTTGCAG+TGG + chr3_1:94511255-94511274 Msa0389570:CDS 40.0%
AGTAGTATTGTTTGCAGTGG+CGG + chr3_1:94511258-94511277 Msa0389570:CDS 40.0%
CTCAAAGTTGTAGTAATGGC+TGG - chr3_1:94511348-94511367 None:intergenic 40.0%
! ACAACTTTGAGCTTTTCCTG+CGG + chr3_1:94511357-94511376 Msa0389570:CDS 40.0%
!!! GGATTTACCTGCGGATTTTT+TGG + chr3_1:94511378-94511397 Msa0389570:CDS 40.0%
ATTTAGCCCAAAAAATCCGC+AGG - chr3_1:94511388-94511407 None:intergenic 40.0%
!!! TTTTTTGGGCTAAATTCCGC+AGG + chr3_1:94511393-94511412 Msa0389570:CDS 40.0%
TAAATCCGCAGGTAAAGACT+GGG - chr3_1:94511497-94511516 None:intergenic 40.0%
CCAGAAAATTTACAGAGCCT+GGG - chr3_1:94511533-94511552 None:intergenic 40.0%
ATCGAATCTCGGTCATTAGT+TGG + chr3_1:94511590-94511609 Msa0389570:intron 40.0%
AGATCAGACAACTCGTATCA+TGG - chr3_1:94511659-94511678 None:intergenic 40.0%
GTCAAGGAAAACATGCAGTA+AGG - chr3_1:94511701-94511720 None:intergenic 40.0%
! TGTATCGCGAGTCTACATTT+TGG - chr3_1:94511741-94511760 None:intergenic 40.0%
TGTAGACTCGCGATACAAAA+AGG + chr3_1:94511744-94511763 Msa0389570:intron 40.0%
GTAGACTCGCGATACAAAAA+GGG + chr3_1:94511745-94511764 Msa0389570:intron 40.0%
! CCTTTTTCCCTTTCTCAGAA+AGG - chr3_1:94511913-94511932 None:intergenic 40.0%
! CCTTTCTGAGAAAGGGAAAA+AGG + chr3_1:94511910-94511929 Msa0389570:intron 40.0%
ATGCAGCTATAATGGTGAAC+CGG + chr3_1:94512007-94512026 Msa0389570:intron 40.0%
! AGTCACTTTCACACGATATC+CGG - chr3_1:94512029-94512048 None:intergenic 40.0%
AAGTGACTCAGATAAGTCAC+TGG + chr3_1:94512041-94512060 Msa0389570:CDS 40.0%
TGCATTGCTATGTCGAATTC+AGG + chr3_1:94512166-94512185 Msa0389570:intron 40.0%
!! GGTATTGCTTTGAAAGCGAA+AGG - chr3_1:94512206-94512225 None:intergenic 40.0%
! GCTGATTCAATTGCTTGCTT+TGG - chr3_1:94512227-94512246 None:intergenic 40.0%
AAGCAAGCAATTGAATCAGC+TGG + chr3_1:94512227-94512246 Msa0389570:CDS 40.0%
AGCAAGCAATTGAATCAGCT+GGG + chr3_1:94512228-94512247 Msa0389570:CDS 40.0%
CAAACCTGTGACATAAAACG+GGG - chr3_1:94512290-94512309 None:intergenic 40.0%
! CTGTAAGGGTTTGGACTTTT+GGG + chr3_1:94512375-94512394 Msa0389570:intron 40.0%
GATCTTTGTACAAGCCTAAG+AGG + chr3_1:94512597-94512616 Msa0389570:intron 40.0%
TGGAATGACTTCTTCCTCTT+AGG - chr3_1:94512614-94512633 None:intergenic 40.0%
TCATTCCAAACAGTGCCAAA+GGG + chr3_1:94512626-94512645 Msa0389570:intron 40.0%
GCAGTGTAAGGAATGAGAAA+GGG - chr3_1:94512684-94512703 None:intergenic 40.0%
AGCAGTGTAAGGAATGAGAA+AGG - chr3_1:94512685-94512704 None:intergenic 40.0%
TTGGAATCACATGGAATGAG+AGG - chr3_1:94512742-94512761 None:intergenic 40.0%
CAGATATCTCAAGGATTAGG+TGG - chr3_1:94513041-94513060 None:intergenic 40.0%
! AAGACTAAGCGTCTCACTTT+TGG - chr3_1:94513110-94513129 None:intergenic 40.0%
TTTCGGTAAATCACCGTGTT+AGG - chr3_1:94513555-94513574 None:intergenic 40.0%
CAACTGGCATTCTAACCTAT+AGG + chr3_1:94513588-94513607 Msa0389570:intron 40.0%
AGATAGGATACGTTGTCTGA+AGG - chr3_1:94514065-94514084 None:intergenic 40.0%
TGGATAGGGATATGATGACT+TGG - chr3_1:94514137-94514156 None:intergenic 40.0%
! GATATTGCATGTGCTACTCA+TGG - chr3_1:94514157-94514176 None:intergenic 40.0%
TATTCATGTCATCCTCTGGA+AGG + chr3_1:94514229-94514248 Msa0389570:intron 40.0%
GGAGATAAATATCCTTCCAG+AGG - chr3_1:94514244-94514263 None:intergenic 40.0%
TCAGGTTTAACATGTCATGG+TGG - chr3_1:94514265-94514284 None:intergenic 40.0%
! CTGAAAAGTTTTGCAGGGAA+GGG + chr3_1:94514281-94514300 Msa0389570:intron 40.0%
!!! GGTTGGCAGTGTTTTGTTTA+AGG - chr3_1:94514330-94514349 None:intergenic 40.0%
AGAGATGCTTCATAGAAGCT+AGG - chr3_1:94514392-94514411 None:intergenic 40.0%
GACTAGTAGAAAGATTCAGC+TGG + chr3_1:94514444-94514463 Msa0389570:intron 40.0%
TACTGGAATGAACGAAAGAG+TGG + chr3_1:94514544-94514563 Msa0389570:intron 40.0%
ACTGGAATGAACGAAAGAGT+GGG + chr3_1:94514545-94514564 Msa0389570:intron 40.0%
TACTAGAGATAGGTGTTTGG+TGG + chr3_1:94514782-94514801 Msa0389570:intron 40.0%
ATTGGCATTATCGCAGATGA+TGG - chr3_1:94514814-94514833 None:intergenic 40.0%
ATCTAGATCATGAGAGGATG+GGG + chr3_1:94514992-94515011 Msa0389570:intron 40.0%
ATTGTAACAAACTGTCCAGG+TGG + chr3_1:94515019-94515038 Msa0389570:intron 40.0%
AGTAAGCATGGGAATATGTG+AGG + chr3_1:94515048-94515067 Msa0389570:intron 40.0%
GTAAGCATGGGAATATGTGA+GGG + chr3_1:94515049-94515068 Msa0389570:intron 40.0%
! ATGTGAGGGTTAATAGTGGA+AGG + chr3_1:94515063-94515082 Msa0389570:intron 40.0%
! TGTGAGGGTTAATAGTGGAA+GGG + chr3_1:94515064-94515083 Msa0389570:intron 40.0%
! ATAGTGGAAGGGAATTGAGA+AGG + chr3_1:94515075-94515094 Msa0389570:intron 40.0%
TAGTGGAAGGGAATTGAGAA+GGG + chr3_1:94515076-94515095 Msa0389570:intron 40.0%
AGAAGGGTAGGCTGTTTATT+AGG + chr3_1:94515092-94515111 Msa0389570:intron 40.0%
GGTAAATGTATGGAGCCATT+TGG + chr3_1:94515113-94515132 Msa0389570:intron 40.0%
! ATACTTGCTGACTACAGTAG+CGG + chr3_1:94515308-94515327 Msa0389570:CDS 40.0%
TAGGACAAATCGATAGCGTA+AGG + chr3_1:94515662-94515681 Msa0389570:three_prime_UTR 40.0%
AGGACAAATCGATAGCGTAA+GGG + chr3_1:94515663-94515682 Msa0389570:three_prime_UTR 40.0%
! CTCTGTACATTGGTGATAGT+TGG + chr3_1:94515789-94515808 Msa0389570:three_prime_UTR 40.0%
!! TGGTGATAGTTGGCTGTTTT+TGG + chr3_1:94515799-94515818 Msa0389570:three_prime_UTR 40.0%
!!! TGATAGTTGGCTGTTTTTGG+TGG + chr3_1:94515802-94515821 Msa0389570:three_prime_UTR 40.0%
TTGCTGAAGCAAGAAGTGGA+AGG - chr3_1:94510747-94510766 None:intergenic 45.0%
! ATTCAGTGTTGGACGCTGAA+AGG + chr3_1:94510969-94510988 Msa0389570:CDS 45.0%
AAGGATTGAACGTGTGAGTG+AGG + chr3_1:94510988-94511007 Msa0389570:CDS 45.0%
GTGTGAGTGAGGATACATTC+AGG + chr3_1:94510999-94511018 Msa0389570:CDS 45.0%
GAGCTTAATGCAACAGCCAT+TGG - chr3_1:94511098-94511117 None:intergenic 45.0%
AAGCTCTTATCCTGCAAGGT+AGG + chr3_1:94511112-94511131 Msa0389570:intron 45.0%
AAAGTAGGTACCTACCTTGC+AGG - chr3_1:94511125-94511144 None:intergenic 45.0%
GCTCAGAACGACAAGTTTGA+TGG + chr3_1:94511233-94511252 Msa0389570:CDS 45.0%
TCCAACTTCCCTTTGTAGTC+AGG + chr3_1:94511322-94511341 Msa0389570:CDS 45.0%
! TTTTCCTGCGGATTTACCTG+CGG + chr3_1:94511369-94511388 Msa0389570:CDS 45.0%
TGCAGGAAATGTGTTTCCTG+CGG - chr3_1:94511412-94511431 None:intergenic 45.0%
! ATTTCCTGCAGATTTTGCCC+AGG + chr3_1:94511454-94511473 Msa0389570:intron 45.0%
! TTTTGCCCAGTCTTTACCTG+CGG + chr3_1:94511489-94511508 Msa0389570:intron 45.0%
GTAAATCCGCAGGTAAAGAC+TGG - chr3_1:94511498-94511517 None:intergenic 45.0%
TAATCTGCAGGTAAATCCGC+AGG - chr3_1:94511508-94511527 None:intergenic 45.0%
TTTACCTGCAGATTATGCCC+AGG + chr3_1:94511513-94511532 Msa0389570:intron 45.0%
! CCCAGGCTCTGTAAATTTTC+TGG + chr3_1:94511530-94511549 Msa0389570:intron 45.0%
GCCAGAAAATTTACAGAGCC+TGG - chr3_1:94511534-94511553 None:intergenic 45.0%
CAGTAAGGGATCTCGATAGT+TGG - chr3_1:94511686-94511705 None:intergenic 45.0%
CGTAGATTCCGTAACAGTCA+AGG - chr3_1:94511717-94511736 None:intergenic 45.0%
! TCTCGTTCCCTTTCTGAGAA+AGG + chr3_1:94511902-94511921 Msa0389570:intron 45.0%
! CTCGTTCCCTTTCTGAGAAA+GGG + chr3_1:94511903-94511922 Msa0389570:intron 45.0%
! GCTGTAAGGGTTTGGACTTT+TGG + chr3_1:94512374-94512393 Msa0389570:intron 45.0%
GTCATTCCAAACAGTGCCAA+AGG + chr3_1:94512625-94512644 Msa0389570:intron 45.0%
ACTAAAGCTCTCACATACGC+AGG + chr3_1:94512910-94512929 Msa0389570:intron 45.0%
CTAAAGCTCTCACATACGCA+GGG + chr3_1:94512911-94512930 Msa0389570:intron 45.0%
GCGTACAATACACCAATGGT+GGG - chr3_1:94512950-94512969 None:intergenic 45.0%
TGCGTACAATACACCAATGG+TGG - chr3_1:94512951-94512970 None:intergenic 45.0%
GGTTGCGTACAATACACCAA+TGG - chr3_1:94512954-94512973 None:intergenic 45.0%
GGTGCCAAACAGATATCTCA+AGG - chr3_1:94513050-94513069 None:intergenic 45.0%
AAAGTGCAAGTGCAACCTGT+GGG - chr3_1:94513201-94513220 None:intergenic 45.0%
TTTACACACATGAGGGTCTG+TGG + chr3_1:94513400-94513419 Msa0389570:intron 45.0%
CTTTGCTTTCGCACCTAACA+CGG + chr3_1:94513539-94513558 Msa0389570:intron 45.0%
GTTAGAATGCCAGTTGCTGT+TGG - chr3_1:94513584-94513603 None:intergenic 45.0%
ACTTGTCTGACTGATATCCC+TGG + chr3_1:94513711-94513730 Msa0389570:intron 45.0%
! GCATGTGCTACTCATGGATA+GGG - chr3_1:94514151-94514170 None:intergenic 45.0%
! TGCATGTGCTACTCATGGAT+AGG - chr3_1:94514152-94514171 None:intergenic 45.0%
GATACAGATTCTCATCGTCC+TGG + chr3_1:94514181-94514200 Msa0389570:intron 45.0%
! GTGCTATTCATGTCATCCTC+TGG + chr3_1:94514225-94514244 Msa0389570:intron 45.0%
! CCTTCCCTGCAAAACTTTTC+AGG - chr3_1:94514283-94514302 None:intergenic 45.0%
! CCTGAAAAGTTTTGCAGGGA+AGG + chr3_1:94514280-94514299 Msa0389570:intron 45.0%
TAACAAACTGTCCAGGTGGA+TGG + chr3_1:94515023-94515042 Msa0389570:intron 45.0%
ATGCTTACTAACCATCCACC+TGG - chr3_1:94515037-94515056 None:intergenic 45.0%
AGGTGGATGGTTAGTAAGCA+TGG + chr3_1:94515036-94515055 Msa0389570:intron 45.0%
GGTGGATGGTTAGTAAGCAT+GGG + chr3_1:94515037-94515056 Msa0389570:intron 45.0%
ATGTATGGAGCCATTTGGCT+AGG + chr3_1:94515118-94515137 Msa0389570:intron 45.0%
TGTATGGAGCCATTTGGCTA+GGG + chr3_1:94515119-94515138 Msa0389570:intron 45.0%
TACTGTGTGCGTCACTAAGA+GGG - chr3_1:94515155-94515174 None:intergenic 45.0%
ATAAGTAACCGTGGTTGCAC+TGG + chr3_1:94515521-94515540 Msa0389570:three_prime_UTR 45.0%
GGACAAATCGATAGCGTAAG+GGG + chr3_1:94515664-94515683 Msa0389570:three_prime_UTR 45.0%
GACAAATCGATAGCGTAAGG+GGG + chr3_1:94515665-94515684 Msa0389570:three_prime_UTR 45.0%
CGTAAGGGGGTTGTAAATCA+AGG + chr3_1:94515678-94515697 Msa0389570:three_prime_UTR 45.0%
!! CAAGAAGTGGAAGGCGTTGT+TGG - chr3_1:94510738-94510757 None:intergenic 50.0%
GGAGTTGCTGAAGCAAGAAG+TGG - chr3_1:94510751-94510770 None:intergenic 50.0%
! AGCAACGAAACGGGCTTTGT+GGG - chr3_1:94510782-94510801 None:intergenic 50.0%
! TACAGCTTCAGGTTCCCCTA+TGG + chr3_1:94511205-94511224 Msa0389570:intron 50.0%
GCCTGACTACAAAGGGAAGT+TGG - chr3_1:94511326-94511345 None:intergenic 50.0%
!! ATGGCTGGCCTGACTACAAA+GGG - chr3_1:94511333-94511352 None:intergenic 50.0%
!! AATGGCTGGCCTGACTACAA+AGG - chr3_1:94511334-94511353 None:intergenic 50.0%
AAATCCGCAGGTAAATCCGC+AGG - chr3_1:94511376-94511395 None:intergenic 50.0%
AAAGCCTGGGCAAAATCTGC+AGG - chr3_1:94511461-94511480 None:intergenic 50.0%
! TGCAGATTTTGCCCAGGCTT+TGG + chr3_1:94511460-94511479 Msa0389570:intron 50.0%
! GCTTCCCCGTTTTATGTCAC+AGG + chr3_1:94512283-94512302 Msa0389570:CDS 50.0%
TTCCAAACAGTGCCAAAGGG+AGG + chr3_1:94512629-94512648 Msa0389570:intron 50.0%
TTCCTCCCTTTGGCACTGTT+TGG - chr3_1:94512634-94512653 None:intergenic 50.0%
AAGACCAAAAAAGGGCAGCC+TGG + chr3_1:94512884-94512903 Msa0389570:intron 50.0%
! TGTGAGAGCTTTAGTGCACC+AGG - chr3_1:94512905-94512924 None:intergenic 50.0%
AAGTGCAAGTGCAACCTGTG+GGG - chr3_1:94513200-94513219 None:intergenic 50.0%
CAAAGTGCAAGTGCAACCTG+TGG - chr3_1:94513202-94513221 None:intergenic 50.0%
CACAGGTTGCACTTGCACTT+TGG + chr3_1:94513200-94513219 Msa0389570:intron 50.0%
GTTGCACTTGCACTTTGGCA+TGG + chr3_1:94513205-94513224 Msa0389570:intron 50.0%
CGTGTTAGGTGCGAAAGCAA+AGG - chr3_1:94513541-94513560 None:intergenic 50.0%
!! GTTGCTGTTGGAGGGGTTTT+CGG - chr3_1:94513572-94513591 None:intergenic 50.0%
AAAACCCCTCCAACAGCAAC+TGG + chr3_1:94513572-94513591 Msa0389570:intron 50.0%
! AATGCCAGTTGCTGTTGGAG+GGG - chr3_1:94513579-94513598 None:intergenic 50.0%
! GAATGCCAGTTGCTGTTGGA+GGG - chr3_1:94513580-94513599 None:intergenic 50.0%
! AGAATGCCAGTTGCTGTTGG+AGG - chr3_1:94513581-94513600 None:intergenic 50.0%
GTAGGGTTGAGATCAAACGC+TGG + chr3_1:94514645-94514664 Msa0389570:intron 50.0%
GGAAGGGAATTGAGAAGGGT+AGG + chr3_1:94515080-94515099 Msa0389570:intron 50.0%
GTACTGTGTGCGTCACTAAG+AGG - chr3_1:94515156-94515175 None:intergenic 50.0%
AGTAGCGGTAGCCAGAGTTA+TGG + chr3_1:94515323-94515342 Msa0389570:CDS 50.0%
! TTGCCTTGAGGCATTTCCAG+AGG - chr3_1:94515473-94515492 None:intergenic 50.0%
AATGCCTCAAGGCAACCTCT+TGG + chr3_1:94515478-94515497 Msa0389570:CDS 50.0%
ATGCCTCAAGGCAACCTCTT+GGG + chr3_1:94515479-94515498 Msa0389570:CDS 50.0%
CAGATTTCACCTGTCCCAAG+AGG - chr3_1:94515496-94515515 None:intergenic 50.0%
! TGCTGCTTGTAGTGTGTGCA+TGG + chr3_1:94515589-94515608 Msa0389570:three_prime_UTR 50.0%
! AAACGGGCTTTGTGGGTCGA+AGG - chr3_1:94510775-94510794 None:intergenic 55.0%
! GAGCAACGAAACGGGCTTTG+TGG - chr3_1:94510783-94510802 None:intergenic 55.0%
CTTACGGCGAGCAACGAAAC+GGG - chr3_1:94510791-94510810 None:intergenic 55.0%
CCTTACGGCGAGCAACGAAA+CGG - chr3_1:94510792-94510811 None:intergenic 55.0%
! GTTCTGAGCAGCGACCATAG+GGG - chr3_1:94511222-94511241 None:intergenic 55.0%
! CGTTCTGAGCAGCGACCATA+GGG - chr3_1:94511223-94511242 None:intergenic 55.0%
! TCGTTCTGAGCAGCGACCAT+AGG - chr3_1:94511224-94511243 None:intergenic 55.0%
AGAGCCTGGGCATAATCTGC+AGG - chr3_1:94511520-94511539 None:intergenic 55.0%
! TGAGAGGTGTGTGCGAGGAA+GGG - chr3_1:94512726-94512745 None:intergenic 55.0%
! ATGAGAGGTGTGTGCGAGGA+AGG - chr3_1:94512727-94512746 None:intergenic 55.0%
! TGGAATGAGAGGTGTGTGCG+AGG - chr3_1:94512731-94512750 None:intergenic 55.0%
!!! TGCACCAGGCTGCCCTTTTT+TGG - chr3_1:94512891-94512910 None:intergenic 55.0%
ACATACGCAGGGTCCGAGAA+GGG + chr3_1:94512922-94512941 Msa0389570:intron 55.0%
GTTCTAACCGAATGCCCCAC+AGG + chr3_1:94513183-94513202 Msa0389570:intron 55.0%
! AGTGCAACCTGTGGGGCATT+CGG - chr3_1:94513193-94513212 None:intergenic 55.0%
ATGGAGCCATTTGGCTAGGG+AGG + chr3_1:94515122-94515141 Msa0389570:intron 55.0%
CTGCAACCTCCCTAGCCAAA+TGG - chr3_1:94515131-94515150 None:intergenic 55.0%
GATTATCAAGCCTGGGCCTC+TGG + chr3_1:94515454-94515473 Msa0389570:CDS 55.0%
TGTCCCAAGAGGTTGCCTTG+AGG - chr3_1:94515485-94515504 None:intergenic 55.0%
TCAAGGCAACCTCTTGGGAC+AGG + chr3_1:94515484-94515503 Msa0389570:CDS 55.0%
CCGTTTCGTTGCTCGCCGTA+AGG + chr3_1:94510789-94510808 Msa0389570:CDS 60.0%
GGGAAGTTGGAGCTGAGCCT+GGG - chr3_1:94511313-94511332 None:intergenic 60.0%
AGGGAAGTTGGAGCTGAGCC+TGG - chr3_1:94511314-94511333 None:intergenic 60.0%
GTGCGAGGAAGGGACACACA+TGG - chr3_1:94512716-94512735 None:intergenic 60.0%
CACATACGCAGGGTCCGAGA+AGG + chr3_1:94512921-94512940 Msa0389570:intron 60.0%
CATACGCAGGGTCCGAGAAG+GGG + chr3_1:94512923-94512942 Msa0389570:intron 60.0%
! CCAATGGTGGGACCCCTTCT+CGG - chr3_1:94512938-94512957 None:intergenic 60.0%
! TGAGGCATTTCCAGAGGCCC+AGG - chr3_1:94515467-94515486 None:intergenic 60.0%
! GGGCCTCTGGAAATGCCTCA+AGG + chr3_1:94515467-94515486 Msa0389570:CDS 60.0%
! AACCGTGGTTGCACTGGTGC+TGG + chr3_1:94515527-94515546 Msa0389570:three_prime_UTR 60.0%
AGCCAGCACCAGTGCAACCA+CGG - chr3_1:94515532-94515551 None:intergenic 60.0%
! CGGGCTTTGTGGGTCGAAGG+AGG - chr3_1:94510772-94510791 None:intergenic 65.0%
! ATCCACCCCCCAGCTAGCCT+GGG + chr3_1:94511281-94511300 Msa0389570:CDS 65.0%
CCGAGAAGGGGTCCCACCAT+TGG + chr3_1:94512935-94512954 Msa0389570:intron 65.0%
GATCCACCCCCCAGCTAGCC+TGG + chr3_1:94511280-94511299 Msa0389570:CDS 70.0%
! ACCAGCCCAGGCTAGCTGGG+GGG - chr3_1:94511289-94511308 None:intergenic 70.0%
! CACCAGCCCAGGCTAGCTGG+GGG - chr3_1:94511290-94511309 None:intergenic 70.0%
! GCACCAGCCCAGGCTAGCTG+GGG - chr3_1:94511291-94511310 None:intergenic 70.0%
! GGCACCAGCCCAGGCTAGCT+GGG - chr3_1:94511292-94511311 None:intergenic 70.0%
! AGCCCAGGCTAGCTGGGGGG+TGG - chr3_1:94511286-94511305 None:intergenic 75.0%
! ACCCCCCAGCTAGCCTGGGC+TGG + chr3_1:94511285-94511304 Msa0389570:CDS 75.0%
GGGCACCAGCCCAGGCTAGC+TGG - chr3_1:94511293-94511312 None:intergenic 75.0%
!! GCTAGCCTGGGCTGGTGCCC+AGG + chr3_1:94511293-94511312 Msa0389570:CDS 75.0%
CTGAGCCTGGGCACCAGCCC+AGG - chr3_1:94511301-94511320 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 94510676 94515857 94510676 ID=Msa0389570;Name=Msa0389570
chr3_1 mRNA 94510676 94515857 94510676 ID=Msa0389570-mRNA-1;Parent=Msa0389570;Name=Msa0389570-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.5|0.71|0.85|1|1|7|341|308
chr3_1 exon 94510676 94510838 94510676 ID=Msa0389570-mRNA-1:exon:26865;Parent=Msa0389570-mRNA-1
chr3_1 exon 94510939 94511129 94510939 ID=Msa0389570-mRNA-1:exon:26866;Parent=Msa0389570-mRNA-1
chr3_1 exon 94511210 94511450 94511210 ID=Msa0389570-mRNA-1:exon:26867;Parent=Msa0389570-mRNA-1
chr3_1 exon 94512013 94512095 94512013 ID=Msa0389570-mRNA-1:exon:26868;Parent=Msa0389570-mRNA-1
chr3_1 exon 94512188 94512304 94512188 ID=Msa0389570-mRNA-1:exon:26869;Parent=Msa0389570-mRNA-1
chr3_1 exon 94515285 94515344 94515285 ID=Msa0389570-mRNA-1:exon:26870;Parent=Msa0389570-mRNA-1
chr3_1 exon 94515445 94515857 94515445 ID=Msa0389570-mRNA-1:exon:26871;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94510676 94510838 94510676 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94510939 94511129 94510939 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94511210 94511450 94511210 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94512013 94512095 94512013 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94512188 94512304 94512188 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94515285 94515344 94515285 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 CDS 94515445 94515516 94515445 ID=Msa0389570-mRNA-1:cds;Parent=Msa0389570-mRNA-1
chr3_1 three_prime_UTR 94515517 94515857 94515517 ID=Msa0389570-mRNA-1:three_prime_utr;Parent=Msa0389570-mRNA-1
Gene Sequence

>Msa0389570

ATGGCTTCGTCATTGGTTAGTTCCATTCTTGTTCAACCCATTTCACGTTGTCATCAACTCCAACAACGCCTTCCACTTCTTGCTTCAGCAACTCCTCCTTCGACCCACAAAGCCCGTTTCGTTGCTCGCCGTAAGGAGTCTGTTTCTGTTCAACAACTCCAACTTGAATATATGAGATTACCAGCAAGTCAATATTCAGTGTTGGACGCTGAAAGGATTGAACGTGTGAGTGAGGATACATTCAGGTGTTACGTTTACACAATTAAGTTTTTCACATTTGAGGTTTGTCCTGTTTTGCTTGTCAAAGTTGAACAACAACCCAATGGCTGTTGCATTAAGCTCTTATCCTGCAAGCTTCAGGTTCCCCTATGGTCGCTGCTCAGAACGACAAGTTTGATGGTCAGTAGTATTGTTTGCAGTGGCGGATCCACCCCCCAGCTAGCCTGGGCTGGTGCCCAGGCTCAGCTCCAACTTCCCTTTGTAGTCAGGCCAGCCATTACTACAACTTTGAGCTTTTCCTGCGGATTTACCTGCGGATTTTTTGGGCTAAATTCCGCAGGAAACACATTTCCTGCAGATTTTGTCAAGGATTTAGCTATAATGGTGAACCGGATATCGTGTGAAAGTGACTCAGATAAGTCACTGGTGCAGCAACTCACATCAGACACTATAATTGAGGTAAGCATTGAAATTCCTTTCGCTTTCAAAGCAATACCAAAGCAAGCAATTGAATCAGCTGGGACTCAAGTCCTTGAACAAATACTCAAGATTATGCTTCCCCGTTTTATGTCACAGTTCTGTATTACTGCTACTGATACATACTTGCTGACTACAGTAGCGGTAGCCAGAGTTATGCTTGTGAAAGATTATCAAGCCTGGGCCTCTGGAAATGCCTCAAGGCAACCTCTTGGGACAGGTGAAATCTGA

Protein sequence

>Msa0389570

MASSLVSSILVQPISRCHQLQQRLPLLASATPPSTHKARFVARRKESVSVQQLQLEYMRLPASQYSVLDAERIERVSEDTFRCYVYTIKFFTFEVCPVLLVKVEQQPNGCCIKLLSCKLQVPLWSLLRTTSLMVSSIVCSGGSTPQLAWAGAQAQLQLPFVVRPAITTTLSFSCGFTCGFFGLNSAGNTFPADFVKDLAIMVNRISCESDSDKSLVQQLTSDTIIEVSIEIPFAFKAIPKQAIESAGTQVLEQILKIMLPRFMSQFCITATDTYLLTTVAVARVMLVKDYQAWASGNASRQPLGTGEI*