Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425400 | XP_003590891.2 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 4.29e-132 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425400 | sp|Q9ZVQ6|P2B10_ARATH | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.58e-58 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425400 | G7I5M1 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 2.05e-132 | 384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011060 | Msa1425400 | -0.801467 | 8.882761e-49 | -8.615850e-47 |
| Msa0031580 | Msa1425400 | 0.970077 | 4.520613e-131 | -8.615850e-47 |
| Msa0034100 | Msa1425400 | -0.811659 | 6.267025e-51 | -8.615850e-47 |
| Msa0036550 | Msa1425400 | 0.818809 | 1.614868e-52 | -8.615850e-47 |
| Msa0048410 | Msa1425400 | -0.801055 | 1.078584e-48 | -8.615850e-47 |
| Msa0067750 | Msa1425400 | -0.803587 | 3.246436e-49 | -8.615850e-47 |
| Msa0078990 | Msa1425400 | 0.965792 | 4.566930e-125 | -8.615850e-47 |
| Msa1346340 | Msa1425400 | -0.803788 | 2.949949e-49 | -8.615850e-47 |
| Msa1361580 | Msa1425400 | -0.813491 | 2.492090e-51 | -8.615850e-47 |
| Msa1371540 | Msa1425400 | -0.801922 | 7.163637e-49 | -8.615850e-47 |
| Msa1375980 | Msa1425400 | -0.804691 | 1.912709e-49 | -8.615850e-47 |
| Msa1395720 | Msa1425400 | 0.825337 | 4.952272e-54 | -8.615850e-47 |
| Msa1400290 | Msa1425400 | -0.803442 | 3.479066e-49 | -8.615850e-47 |
| Msa1425400 | Msa1462210 | -0.803542 | 3.317567e-49 | -8.615850e-47 |
| Msa0616890 | Msa1425400 | -0.807195 | 5.692073e-50 | -8.615850e-47 |
| Msa0634900 | Msa1425400 | -0.810376 | 1.188659e-50 | -8.615850e-47 |
| Msa0693050 | Msa1425400 | -0.804601 | 1.997968e-49 | -8.615850e-47 |
| Msa0733240 | Msa1425400 | -0.813623 | 2.330510e-51 | -8.615850e-47 |
| Msa0812020 | Msa1425400 | -0.816157 | 6.391952e-52 | -8.615850e-47 |
| Msa0127350 | Msa1425400 | -0.807546 | 4.794078e-50 | -8.615850e-47 |
| Msa0128110 | Msa1425400 | -0.806253 | 8.998286e-50 | -8.615850e-47 |
| Msa0138340 | Msa1425400 | -0.801123 | 1.044575e-48 | -8.615850e-47 |
| Msa0139850 | Msa1425400 | 0.806759 | 7.039242e-50 | -8.615850e-47 |
| Msa0147960 | Msa1425400 | -0.801008 | 1.102529e-48 | -8.615850e-47 |
| Msa0165820 | Msa1425400 | -0.816028 | 6.828924e-52 | -8.615850e-47 |
| Msa0171510 | Msa1425400 | 0.937360 | 3.934379e-98 | -8.615850e-47 |
| Msa0208710 | Msa1425400 | -0.804623 | 1.976308e-49 | -8.615850e-47 |
| Msa0225070 | Msa1425400 | -0.812518 | 4.072880e-51 | -8.615850e-47 |
| Msa1291070 | Msa1425400 | -0.808106 | 3.645224e-50 | -8.615850e-47 |
| Msa1295210 | Msa1425400 | -0.802253 | 6.124070e-49 | -8.615850e-47 |
| Msa1342360 | Msa1425400 | -0.813643 | 2.307004e-51 | -8.615850e-47 |
| Msa0403740 | Msa1425400 | -0.805502 | 1.294222e-49 | -8.615850e-47 |
| Msa0422230 | Msa1425400 | -0.808121 | 3.618288e-50 | -8.615850e-47 |
| Msa0456450 | Msa1425400 | -0.812943 | 3.286627e-51 | -8.615850e-47 |
| Msa1047300 | Msa1425400 | 0.808945 | 2.413038e-50 | -8.615850e-47 |
| Msa1047340 | Msa1425400 | 0.808913 | 2.451531e-50 | -8.615850e-47 |
| Msa1070630 | Msa1425400 | -0.800050 | 1.728596e-48 | -8.615850e-47 |
| Msa1093190 | Msa1425400 | -0.803830 | 2.890450e-49 | -8.615850e-47 |
| Msa0343230 | Msa1425400 | -0.807718 | 4.408613e-50 | -8.615850e-47 |
| Msa0364030 | Msa1425400 | -0.806272 | 8.918099e-50 | -8.615850e-47 |
| Msa1143060 | Msa1425400 | -0.806898 | 6.575934e-50 | -8.615850e-47 |
| Msa1184680 | Msa1425400 | 0.810326 | 1.218754e-50 | -8.615850e-47 |
| Msa0548420 | Msa1425400 | 0.811829 | 5.755558e-51 | -8.615850e-47 |
| Msa0568300 | Msa1425400 | -0.803793 | 2.942089e-49 | -8.615850e-47 |
| Msa0582270 | Msa1425400 | -0.813988 | 1.937069e-51 | -8.615850e-47 |
| Msa0967900 | Msa1425400 | -0.814230 | 1.712355e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425400 | MtrunA17_Chr1g0189751 | 78.439 | 269 | 26 | 2 | 1 | 239 | 1 | 267 | 3.95e-136 | 384 |
| Msa1425400 | MtrunA17_Chr1g0189721 | 72.659 | 267 | 41 | 2 | 1 | 237 | 1 | 265 | 3.46e-134 | 378 |
| Msa1425400 | MtrunA17_Chr1g0189611 | 64.444 | 270 | 58 | 4 | 1 | 237 | 1 | 265 | 2.19e-118 | 338 |
| Msa1425400 | MtrunA17_Chr1g0189671 | 58.123 | 277 | 77 | 4 | 1 | 240 | 1 | 275 | 1.02e-106 | 309 |
| Msa1425400 | MtrunA17_Chr1g0189821 | 60.073 | 273 | 72 | 4 | 1 | 240 | 1 | 269 | 9.68e-106 | 306 |
| Msa1425400 | MtrunA17_Chr1g0189621 | 60.223 | 269 | 70 | 5 | 1 | 237 | 1 | 264 | 1.25e-105 | 306 |
| Msa1425400 | MtrunA17_Chr1g0203281 | 58.993 | 278 | 73 | 4 | 1 | 240 | 1 | 275 | 5.79e-105 | 305 |
| Msa1425400 | MtrunA17_Chr1g0189641 | 53.791 | 277 | 90 | 3 | 1 | 240 | 1 | 276 | 3.26e-95 | 280 |
| Msa1425400 | MtrunA17_Chr1g0190071 | 53.497 | 286 | 85 | 5 | 1 | 240 | 1 | 284 | 1.33e-91 | 271 |
| Msa1425400 | MtrunA17_Chr1g0203331 | 58.367 | 245 | 60 | 3 | 15 | 218 | 1 | 244 | 7.97e-89 | 262 |
| Msa1425400 | MtrunA17_Chr3g0097191 | 54.815 | 270 | 80 | 7 | 4 | 240 | 10 | 270 | 1.41e-86 | 258 |
| Msa1425400 | MtrunA17_Chr1g0189661 | 52.128 | 282 | 92 | 6 | 1 | 240 | 1 | 281 | 1.43e-85 | 256 |
| Msa1425400 | MtrunA17_Chr1g0157451 | 49.129 | 287 | 98 | 6 | 1 | 240 | 1 | 286 | 2.22e-82 | 248 |
| Msa1425400 | MtrunA17_Chr3g0078331 | 48.525 | 305 | 86 | 6 | 4 | 240 | 17 | 318 | 4.18e-80 | 243 |
| Msa1425400 | MtrunA17_Chr1g0189711 | 50.181 | 277 | 96 | 7 | 1 | 237 | 1 | 275 | 7.59e-78 | 236 |
| Msa1425400 | MtrunA17_Chr1g0189781 | 48.519 | 270 | 99 | 5 | 4 | 237 | 8 | 273 | 9.87e-78 | 235 |
| Msa1425400 | MtrunA17_Chr1g0189541 | 62.304 | 191 | 62 | 4 | 47 | 237 | 4 | 184 | 1.99e-76 | 229 |
| Msa1425400 | MtrunA17_Chr7g0260801 | 50.000 | 270 | 94 | 8 | 1 | 237 | 13 | 274 | 8.24e-74 | 225 |
| Msa1425400 | MtrunA17_Chr3g0095261 | 49.301 | 286 | 87 | 10 | 4 | 240 | 10 | 286 | 6.48e-72 | 221 |
| Msa1425400 | MtrunA17_Chr1g0189591 | 43.624 | 298 | 102 | 7 | 3 | 237 | 12 | 306 | 4.36e-70 | 217 |
| Msa1425400 | MtrunA17_Chr1g0189701 | 47.260 | 292 | 93 | 9 | 1 | 237 | 32 | 317 | 4.53e-67 | 209 |
| Msa1425400 | MtrunA17_Chr2g0317291 | 57.143 | 161 | 67 | 1 | 74 | 234 | 54 | 212 | 4.49e-51 | 166 |
| Msa1425400 | MtrunA17_Chr1g0188311 | 61.194 | 134 | 36 | 1 | 98 | 215 | 22 | 155 | 1.11e-49 | 160 |
| Msa1425400 | MtrunA17_Chr1g0189651 | 56.707 | 164 | 58 | 4 | 74 | 237 | 29 | 179 | 1.05e-48 | 158 |
| Msa1425400 | MtrunA17_Chr7g0272091 | 36.972 | 284 | 128 | 8 | 2 | 238 | 5 | 284 | 3.24e-48 | 160 |
| Msa1425400 | MtrunA17_Chr1g0189571 | 43.128 | 211 | 85 | 6 | 56 | 237 | 1 | 205 | 1.23e-43 | 146 |
| Msa1425400 | MtrunA17_Chr1g0192371 | 34.643 | 280 | 135 | 9 | 2 | 237 | 6 | 281 | 6.62e-42 | 144 |
| Msa1425400 | MtrunA17_Chr7g0272101 | 33.969 | 262 | 134 | 7 | 7 | 237 | 4 | 257 | 8.23e-39 | 135 |
| Msa1425400 | MtrunA17_Chr1g0189771 | 45.399 | 163 | 55 | 2 | 4 | 132 | 12 | 174 | 7.56e-38 | 130 |
| Msa1425400 | MtrunA17_Chr3g0102081 | 59.091 | 110 | 43 | 1 | 90 | 199 | 16 | 123 | 2.23e-36 | 125 |
| Msa1425400 | MtrunA17_Chr4g0010881 | 31.179 | 263 | 120 | 8 | 7 | 237 | 4 | 237 | 2.13e-32 | 118 |
| Msa1425400 | MtrunA17_Chr1g0189631 | 55.963 | 109 | 32 | 2 | 115 | 209 | 1 | 107 | 5.10e-32 | 113 |
| Msa1425400 | MtrunA17_Chr1g0189531 | 72.000 | 75 | 21 | 0 | 1 | 75 | 64 | 138 | 4.65e-29 | 109 |
| Msa1425400 | MtrunA17_Chr3g0143881 | 44.715 | 123 | 52 | 2 | 115 | 237 | 1 | 107 | 3.45e-27 | 100 |
| Msa1425400 | MtrunA17_Chr2g0300961 | 61.538 | 78 | 28 | 2 | 1 | 76 | 1 | 78 | 1.92e-22 | 89.4 |
| Msa1425400 | MtrunA17_Chr7g0260811 | 41.892 | 148 | 52 | 5 | 38 | 155 | 19 | 162 | 1.58e-18 | 80.1 |
| Msa1425400 | MtrunA17_Chr1g0189761 | 49.462 | 93 | 44 | 2 | 145 | 237 | 5 | 94 | 3.54e-16 | 71.6 |
| Msa1425400 | MtrunA17_Chr4g0043591 | 27.811 | 169 | 99 | 5 | 71 | 237 | 143 | 290 | 2.30e-15 | 73.6 |
| Msa1425400 | MtrunA17_Chr5g0397981 | 29.586 | 169 | 86 | 5 | 2 | 139 | 33 | 199 | 8.62e-14 | 69.3 |
| Msa1425400 | MtrunA17_Chr1g0203751 | 30.872 | 149 | 72 | 2 | 2 | 119 | 26 | 174 | 8.41e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1425400 | AT2G02360.1 | 41.538 | 260 | 114 | 8 | 7 | 236 | 17 | 268 | 2.62e-59 | 189 |
| Msa1425400 | AT2G02340.1 | 36.296 | 270 | 137 | 4 | 1 | 236 | 33 | 301 | 1.37e-53 | 175 |
| Msa1425400 | AT1G80110.1 | 38.636 | 264 | 122 | 7 | 4 | 236 | 1 | 255 | 5.76e-50 | 164 |
| Msa1425400 | AT2G02240.1 | 37.023 | 262 | 124 | 7 | 7 | 236 | 64 | 316 | 2.88e-48 | 162 |
| Msa1425400 | AT2G02250.1 | 36.090 | 266 | 128 | 7 | 4 | 236 | 47 | 303 | 4.18e-47 | 158 |
| Msa1425400 | AT1G09155.1 | 37.500 | 280 | 124 | 8 | 7 | 237 | 3 | 280 | 7.62e-47 | 157 |
| Msa1425400 | AT2G02350.2 | 35.206 | 267 | 131 | 8 | 4 | 236 | 24 | 282 | 1.90e-42 | 146 |
| Msa1425400 | AT1G56250.1 | 36.786 | 280 | 126 | 8 | 7 | 237 | 4 | 281 | 5.09e-42 | 144 |
| Msa1425400 | AT1G56240.1 | 36.201 | 279 | 127 | 8 | 7 | 236 | 4 | 280 | 1.34e-41 | 143 |
| Msa1425400 | AT2G02230.1 | 30.164 | 305 | 139 | 6 | 7 | 240 | 35 | 336 | 1.23e-40 | 142 |
| Msa1425400 | AT2G02320.1 | 33.962 | 265 | 133 | 9 | 6 | 236 | 42 | 298 | 8.75e-38 | 134 |
| Msa1425400 | AT2G02310.1 | 29.104 | 268 | 148 | 7 | 4 | 237 | 45 | 304 | 1.61e-32 | 120 |
| Msa1425400 | AT2G02300.1 | 31.734 | 271 | 125 | 7 | 4 | 237 | 34 | 281 | 5.39e-32 | 118 |
| Msa1425400 | AT2G02350.1 | 36.913 | 149 | 86 | 4 | 91 | 236 | 22 | 165 | 5.39e-26 | 100 |
| Msa1425400 | AT5G24560.1 | 29.915 | 234 | 116 | 7 | 6 | 237 | 5 | 192 | 4.48e-25 | 98.2 |
| Msa1425400 | AT3G53000.1 | 25.632 | 277 | 149 | 11 | 4 | 236 | 21 | 284 | 4.55e-16 | 76.3 |
| Msa1425400 | AT1G12710.1 | 32.639 | 144 | 63 | 3 | 6 | 117 | 30 | 171 | 1.29e-13 | 69.3 |
| Msa1425400 | AT1G63090.1 | 29.268 | 164 | 80 | 4 | 4 | 135 | 26 | 185 | 5.84e-13 | 67.4 |
| Msa1425400 | AT3G61060.2 | 26.994 | 163 | 83 | 4 | 6 | 135 | 27 | 186 | 8.10e-13 | 67.0 |
| Msa1425400 | AT3G61060.1 | 28.834 | 163 | 79 | 5 | 6 | 135 | 27 | 185 | 1.01e-12 | 66.6 |
| Msa1425400 | AT4G19850.3 | 26.816 | 179 | 101 | 7 | 68 | 237 | 61 | 218 | 8.98e-12 | 63.2 |
| Msa1425400 | AT4G19850.1 | 26.816 | 179 | 101 | 7 | 68 | 237 | 19 | 176 | 9.94e-12 | 62.0 |
| Msa1425400 | AT1G33920.1 | 24.022 | 179 | 109 | 4 | 65 | 237 | 7 | 164 | 1.80e-11 | 61.2 |
| Msa1425400 | AT4G19840.1 | 28.824 | 170 | 98 | 8 | 71 | 237 | 96 | 245 | 3.06e-11 | 62.0 |
Find 80 sgRNAs with CRISPR-Local
Find 290 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGCTGCATATTGAGTATT+TGG | 0.137691 | tig0025848:+38414 | Msa1425400:intergenic |
| CTTATTGTTGTTCAGTATAC+TGG | 0.163118 | tig0025848:-37923 | Msa1425400:three_prime_UTR |
| TTCAAAATGATTGATGCTTA+TGG | 0.231867 | tig0025848:-38384 | Msa1425400:CDS |
| CTAGATCTCTTGCCATTGTT+TGG | 0.245415 | tig0025848:-40959 | Msa1425400:intron |
| TAGATCTCTTGCCATTGTTT+GGG | 0.268063 | tig0025848:-40958 | Msa1425400:CDS |
| CTGAACTATGCAAGGGGTCT+TGG | 0.296858 | tig0025848:-38047 | Msa1425400:three_prime_UTR |
| TCAACAAGCTTAGCGACTTC+AGG | 0.333696 | tig0025848:+38486 | Msa1425400:intergenic |
| AAGCTGCATATTGAGTATTT+GGG | 0.334659 | tig0025848:+38415 | Msa1425400:intergenic |
| TGCCAACATTCCTACCAAAA+AGG | 0.349990 | tig0025848:-41949 | Msa1425400:CDS |
| TGATTTCTATGCCTGATTCC+AGG | 0.379925 | tig0025848:-40911 | Msa1425400:intron |
| TGAGGATTACCTTCCACATT+TGG | 0.380026 | tig0025848:+38285 | Msa1425400:intergenic |
| ATATTAGTATGTTGAAAAGT+TGG | 0.382553 | tig0025848:+37994 | Msa1425400:intergenic |
| GAGAGTCTGCCGGCGTCAAC+TGG | 0.384737 | tig0025848:+42074 | Msa1425400:intergenic |
| CCTCCAACTCCGACGCTGTA+TGG | 0.389215 | tig0025848:-42025 | Msa1425400:CDS |
| TGAACTATGCAAGGGGTCTT+GGG | 0.402498 | tig0025848:-38046 | Msa1425400:three_prime_UTR |
| TTAAGAGCTAACCTGGAATC+AGG | 0.410946 | tig0025848:+40900 | Msa1425400:intergenic |
| TGGATATCTTTGTTGTGTTG+TGG | 0.414878 | tig0025848:-37898 | Msa1425400:three_prime_UTR |
| GACAGAGATTCAGGATTTGC+CGG | 0.423087 | tig0025848:-42132 | Msa1425400:CDS |
| TAGTACTAAAATTGTCTGTT+TGG | 0.434481 | tig0025848:-38310 | Msa1425400:CDS |
| CTAAGCTTGTTGATGTGTGT+TGG | 0.438622 | tig0025848:-38476 | Msa1425400:CDS |
| TGGAGTTGTACGAGAGACTA+TGG | 0.443442 | tig0025848:+42094 | Msa1425400:intergenic |
| ATCACAATATATTATATAGT+TGG | 0.445877 | tig0025848:+37845 | Msa1425400:intergenic |
| GTGTGTTGGCTTGAAATTCA+TGG | 0.446205 | tig0025848:-38462 | Msa1425400:CDS |
| ATGCAAGGGGTCTTGGGTCG+TGG | 0.466084 | tig0025848:-38040 | Msa1425400:three_prime_UTR |
| GTTGGTTAATTGTTATACTT+AGG | 0.467370 | tig0025848:+38075 | Msa1425400:intergenic |
| CCATACAGCGTCGGAGTTGG+AGG | 0.469088 | tig0025848:+42025 | Msa1425400:intergenic |
| TCATCTGTATCAGATTCATC+TGG | 0.472901 | tig0025848:+38154 | Msa1425400:intergenic |
| CAGCCGCACAACACAGTAGT+AGG | 0.476209 | tig0025848:-38264 | Msa1425400:CDS |
| ATTCCATACAGCGTCGGAGT+TGG | 0.478886 | tig0025848:+42022 | Msa1425400:intergenic |
| CAACAAGCTTAGCGACTTCA+GGG | 0.483357 | tig0025848:+38487 | Msa1425400:intergenic |
| AAGAGAGGTCTCGTTGTTGA+AGG | 0.488523 | tig0025848:-38111 | Msa1425400:CDS |
| ATGGTGGCAATGCATCCTTC+CGG | 0.489320 | tig0025848:+42113 | Msa1425400:intergenic |
| TGTTCTGCGGATTTATCAGT+TGG | 0.493868 | tig0025848:-38351 | Msa1425400:CDS |
| CATATTGAGTATTTGGGGAC+AGG | 0.495017 | tig0025848:+38421 | Msa1425400:intergenic |
| TGGGTGGTTGGAGATTGAGA+TGG | 0.496484 | tig0025848:-38214 | Msa1425400:CDS |
| TTGTTGAAGGAATTGAAGTC+AGG | 0.499615 | tig0025848:-38098 | Msa1425400:CDS |
| TGGAACAATCAACAGACATC+AGG | 0.499719 | tig0025848:+37865 | Msa1425400:intergenic |
| CGTCCTACTGTGAGAAGCGA+TGG | 0.500006 | tig0025848:-38234 | Msa1425400:CDS |
| ACTACTGTGTTGTGCGGCTG+AGG | 0.503355 | tig0025848:+38267 | Msa1425400:intergenic |
| ATGGGTGAGTTCTTCAATCC+AGG | 0.510010 | tig0025848:-38195 | Msa1425400:CDS |
| GTAGGAATGTTGGCAAGGGA+AGG | 0.521816 | tig0025848:+41957 | Msa1425400:intergenic |
| TTATTGTTGTTCAGTATACT+GGG | 0.530310 | tig0025848:-37922 | Msa1425400:three_prime_UTR |
| GGGGTGATGATAGACGCTAT+TGG | 0.532370 | tig0025848:-40938 | Msa1425400:CDS |
| GGGTGGTTGGAGATTGAGAT+GGG | 0.533715 | tig0025848:-38213 | Msa1425400:CDS |
| AACATTCACTGAACTATGCA+AGG | 0.541083 | tig0025848:-38055 | Msa1425400:three_prime_UTR |
| TGAGTGGTGGTCGTGGTGGT+TGG | 0.545093 | tig0025848:-38134 | Msa1425400:CDS |
| TTGCATAGTTCAGTGAATGT+TGG | 0.553784 | tig0025848:+38057 | Msa1425400:intergenic |
| TGTTGTTCAGTATACTGGGA+TGG | 0.556183 | tig0025848:-37918 | Msa1425400:three_prime_UTR |
| CGTCGGAGTTGGAGGCTGAT+CGG | 0.556747 | tig0025848:+42033 | Msa1425400:intergenic |
| GAGATTCAGGATTTGCCGGA+AGG | 0.560627 | tig0025848:-42128 | Msa1425400:CDS |
| AGATCTCTTGCCATTGTTTG+GGG | 0.561132 | tig0025848:-40957 | Msa1425400:CDS |
| GGTCGTGGTGGTTGGAAGAG+AGG | 0.562312 | tig0025848:-38126 | Msa1425400:CDS |
| GATTTATCAGTTGGTGTCGA+AGG | 0.564414 | tig0025848:-38342 | Msa1425400:CDS |
| TGTGAGAAGCGATGGGTGGT+TGG | 0.573841 | tig0025848:-38226 | Msa1425400:CDS |
| GGAAACGACGGAGAGTCTGC+CGG | 0.576478 | tig0025848:+42064 | Msa1425400:intergenic |
| ATGATAGATGAGATGTCAGA+AGG | 0.589136 | tig0025848:+41990 | Msa1425400:intergenic |
| GGAGGCTGATCGGAAAGTGT+TGG | 0.593620 | tig0025848:+42043 | Msa1425400:intergenic |
| TTATCAGTTGGTGTCGAAGG+TGG | 0.596520 | tig0025848:-38339 | Msa1425400:CDS |
| AGCTGCATATTGAGTATTTG+GGG | 0.601395 | tig0025848:+38416 | Msa1425400:intergenic |
| ACATTCACTGAACTATGCAA+GGG | 0.606445 | tig0025848:-38054 | Msa1425400:three_prime_UTR |
| TTTGGTAGGAATGTTGGCAA+GGG | 0.607331 | tig0025848:+41953 | Msa1425400:intergenic |
| ATACAGATGAGTGGTGGTCG+TGG | 0.619250 | tig0025848:-38141 | Msa1425400:CDS |
| TGGATTTCAGAACTGTTCTG+CGG | 0.620211 | tig0025848:-38364 | Msa1425400:CDS |
| TGTCTGTTTGGATCCAAATG+TGG | 0.625217 | tig0025848:-38298 | Msa1425400:CDS |
| TCTATCATCACCCCAAACAA+TGG | 0.627087 | tig0025848:+40947 | Msa1425400:intergenic |
| AATCAACAGACATCAGGAAG+AGG | 0.628326 | tig0025848:+37871 | Msa1425400:intergenic |
| AGTATTTGGGGACAGGACGA+TGG | 0.644084 | tig0025848:+38428 | Msa1425400:intergenic |
| GTCCTACTGTGAGAAGCGAT+GGG | 0.647735 | tig0025848:-38233 | Msa1425400:CDS |
| CACCCATCGCTTCTCACAGT+AGG | 0.650219 | tig0025848:+38231 | Msa1425400:intergenic |
| CAGATGAGTGGTGGTCGTGG+TGG | 0.655384 | tig0025848:-38138 | Msa1425400:CDS |
| TCGGAAAGTGTTGGAAACGA+CGG | 0.666718 | tig0025848:+42052 | Msa1425400:intergenic |
| CATTCACTGAACTATGCAAG+GGG | 0.671001 | tig0025848:-38053 | Msa1425400:three_prime_UTR |
| AATCCTACTACTGTGTTGTG+CGG | 0.681890 | tig0025848:+38261 | Msa1425400:intergenic |
| AAAACGATTCCATACAGCGT+CGG | 0.682477 | tig0025848:+42016 | Msa1425400:intergenic |
| TGTTTGGATCCAAATGTGGA+AGG | 0.696224 | tig0025848:-38294 | Msa1425400:CDS |
| CTACTGTGAGAAGCGATGGG+TGG | 0.696678 | tig0025848:-38230 | Msa1425400:CDS |
| CGTACAACTCCAGTTGACGC+CGG | 0.721519 | tig0025848:-42083 | Msa1425400:CDS |
| ATGAATCTGATACAGATGAG+TGG | 0.742711 | tig0025848:-38150 | Msa1425400:CDS |
| AATCTGATACAGATGAGTGG+TGG | 0.745247 | tig0025848:-38147 | Msa1425400:CDS |
| AGTTGTACGAGAGACTATGG+TGG | 0.755358 | tig0025848:+42097 | Msa1425390:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAGAAAAATAAAAAA+TGG | + | tig0025848:39497-39516 | Msa1425400:intergenic | 10.0% |
| !!! | ATTTTGAGAAAAATAAAAAT+TGG | + | tig0025848:40310-40329 | Msa1425400:intergenic | 10.0% |
| !!! | TGACAAATATATTTTTAAAG+GGG | + | tig0025848:38811-38830 | Msa1425400:intergenic | 15.0% |
| !!! | GTGACAAATATATTTTTAAA+GGG | + | tig0025848:38812-38831 | Msa1425400:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | - | tig0025848:39428-39447 | Msa1425400:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | + | tig0025848:39538-39557 | Msa1425400:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | + | tig0025848:39563-39582 | Msa1425400:intergenic | 15.0% |
| !!! | TATTTTTAAAGATACTTCAA+CGG | - | tig0025848:39428-39447 | Msa1425400:intron | 15.0% |
| !! | AATAATAATAAATGTTGCAT+TGG | + | tig0025848:39538-39557 | Msa1425400:intergenic | 15.0% |
| !! | CAATAATAAGTGTATAATAA+TGG | + | tig0025848:39563-39582 | Msa1425400:intergenic | 15.0% |
| !!! | ATTAATTTTAACTTGAACAA+AGG | + | tig0025848:41214-41233 | Msa1425400:intergenic | 15.0% |
| !! | ATCACAATATATTATATAGT+TGG | + | tig0025848:42104-42123 | Msa1425400:intergenic | 15.0% |
| !!! | GATTTTTTAAGATGTTTAGT+TGG | - | tig0025848:38108-38127 | Msa1425400:CDS | 20.0% |
| !! | AACACCAAATATGAAATATT+TGG | - | tig0025848:38135-38154 | Msa1425400:CDS | 20.0% |
| !! | TCAACCAAATATTTCATATT+TGG | + | tig0025848:38142-38161 | Msa1425400:intergenic | 20.0% |
| !! | TCAGTTTGTAATAATAACAA+TGG | - | tig0025848:38471-38490 | Msa1425400:CDS | 20.0% |
| !! | CAGTTTGTAATAATAACAAT+GGG | - | tig0025848:38472-38491 | Msa1425400:CDS | 20.0% |
| !!! | GACAAATATATTTTTAAAGG+GGG | + | tig0025848:38810-38829 | Msa1425400:intergenic | 20.0% |
| !!! | GGTGACAAATATATTTTTAA+AGG | + | tig0025848:38813-38832 | Msa1425400:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | - | tig0025848:39093-39112 | Msa1425400:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | + | tig0025848:39366-39385 | Msa1425400:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | + | tig0025848:39367-39386 | Msa1425400:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | - | tig0025848:39429-39448 | Msa1425400:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | tig0025848:39656-39675 | Msa1425400:intergenic | 20.0% |
| !! | GATTAACTCATAATTAATAC+TGG | - | tig0025848:39093-39112 | Msa1425400:intron | 20.0% |
| !!! | TTTTTCAATTAAGATCACAT+GGG | + | tig0025848:39366-39385 | Msa1425400:intergenic | 20.0% |
| !!! | TTTTTTCAATTAAGATCACA+TGG | + | tig0025848:39367-39386 | Msa1425400:intergenic | 20.0% |
| !!! | ATTTTTAAAGATACTTCAAC+GGG | - | tig0025848:39429-39448 | Msa1425400:intron | 20.0% |
| !!! | ATTAATTGTGTTGATTTTGA+TGG | + | tig0025848:39656-39675 | Msa1425400:intergenic | 20.0% |
| !! | CATTCAAAAATAAATAGGTT+CGG | + | tig0025848:41054-41073 | Msa1425400:intergenic | 20.0% |
| !! | TGATGCATTCAAAAATAAAT+AGG | + | tig0025848:41059-41078 | Msa1425400:intergenic | 20.0% |
| !! | GGTCTGATATTTAAAAAATT+TGG | + | tig0025848:41087-41106 | Msa1425400:intergenic | 20.0% |
| !! | TTGTAAAGTAACAAACAAAT+TGG | + | tig0025848:41108-41127 | Msa1425400:intergenic | 20.0% |
| !! | ATATTAGTATGTTGAAAAGT+TGG | + | tig0025848:41955-41974 | Msa1425400:intergenic | 20.0% |
| !!! | TATTTTACAAAGAAAGAGAT+TGG | + | tig0025848:41985-42004 | Msa1425400:intergenic | 20.0% |
| ! | AAATAATTCGAAGTTGCAAT+TGG | - | tig0025848:38283-38302 | Msa1425400:CDS | 25.0% |
| ! | TTGTAATAATAACAATGGGT+TGG | - | tig0025848:38476-38495 | Msa1425400:CDS | 25.0% |
| ! | TTAAATTGCAGGAATGTAAA+GGG | + | tig0025848:38586-38605 | Msa1425400:intergenic | 25.0% |
| ! | ATTAAATTGCAGGAATGTAA+AGG | + | tig0025848:38587-38606 | Msa1425400:intergenic | 25.0% |
| ! | GAACATTGATATTAAATTGC+AGG | + | tig0025848:38597-38616 | Msa1425400:intergenic | 25.0% |
| ! | AGATGAAAAGGAAAAGAAAA+AGG | + | tig0025848:38632-38651 | Msa1425400:intergenic | 25.0% |
| !!! | AACTTGTTATTACAAGATGT+TGG | - | tig0025848:38714-38733 | Msa1425400:intron | 25.0% |
| ! | GAGTTTACATTACCAAAAAT+CGG | - | tig0025848:38886-38905 | Msa1425400:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | tig0025848:39604-39623 | Msa1425400:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | + | tig0025848:39608-39627 | Msa1425400:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | - | tig0025848:39705-39724 | Msa1425400:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | + | tig0025848:39782-39801 | Msa1425400:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | - | tig0025848:39781-39800 | Msa1425400:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | + | tig0025848:39794-39813 | Msa1425400:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | tig0025848:39604-39623 | Msa1425400:intron | 25.0% |
| ! | ACCTTATTAATTGTAGTTAG+TGG | + | tig0025848:39608-39627 | Msa1425400:intergenic | 25.0% |
| ! | AAACGAGTATTATTTAGAGA+AGG | - | tig0025848:39705-39724 | Msa1425400:intron | 25.0% |
| ! | TATAAAAAAGGACATAACTG+TGG | + | tig0025848:39782-39801 | Msa1425400:intergenic | 25.0% |
| !!! | ACAGTTATGTCCTTTTTTAT+AGG | - | tig0025848:39781-39800 | Msa1425400:intron | 25.0% |
| ! | ATCATTCAAGCCTATAAAAA+AGG | + | tig0025848:39794-39813 | Msa1425400:intergenic | 25.0% |
| !!! | TTTTTTGATCCTAATTGTTG+CGG | - | tig0025848:41025-41044 | Msa1425400:intron | 25.0% |
| !!! | TTTTAACTTGAACAAAGGAA+TGG | + | tig0025848:41209-41228 | Msa1425400:intergenic | 25.0% |
| ! | GTACTCGACAAATAAAATAA+TGG | + | tig0025848:41268-41287 | Msa1425400:intergenic | 25.0% |
| ! | TGCAAAGATTAGAAGATAAT+GGG | + | tig0025848:41411-41430 | Msa1425400:intergenic | 25.0% |
| ! | ATGCAAAGATTAGAAGATAA+TGG | + | tig0025848:41412-41431 | Msa1425400:intergenic | 25.0% |
| ! | TTCAAAATGATTGATGCTTA+TGG | - | tig0025848:41562-41581 | Msa1425400:intron | 25.0% |
| ! | TAGTACTAAAATTGTCTGTT+TGG | - | tig0025848:41636-41655 | Msa1425400:intron | 25.0% |
| ! | GTTGGTTAATTGTTATACTT+AGG | + | tig0025848:41874-41893 | Msa1425400:intergenic | 25.0% |
| !! | TTATTGTTGTTCAGTATACT+GGG | - | tig0025848:42024-42043 | Msa1425400:CDS | 25.0% |
| CATCATCGATCATGATAAAA+AGG | - | tig0025848:38051-38070 | Msa1425400:three_prime_UTR | 30.0% | |
| TCATTTCAACAATAAGCCTT+AGG | + | tig0025848:38090-38109 | Msa1425400:intergenic | 30.0% | |
| ! | TCATGATTATGTTTTCGACA+AGG | - | tig0025848:38164-38183 | Msa1425400:CDS | 30.0% |
| ! | GAATTATTTCTCCTTGTCTT+TGG | + | tig0025848:38272-38291 | Msa1425400:intergenic | 30.0% |
| ! | AAGTTATTTCCTAGTGTCTT+AGG | - | tig0025848:38370-38389 | Msa1425400:CDS | 30.0% |
| CTATAATTTCCTAAGACACT+AGG | + | tig0025848:38382-38401 | Msa1425400:intergenic | 30.0% | |
| CTAGTGTCTTAGGAAATTAT+AGG | - | tig0025848:38380-38399 | Msa1425400:CDS | 30.0% | |
| !! | CTACTTTTAATATAGACCGT+AGG | - | tig0025848:38412-38431 | Msa1425400:CDS | 30.0% |
| AAAACTACCACTAAATCCTA+CGG | + | tig0025848:38431-38450 | Msa1425400:intergenic | 30.0% | |
| AGAAGAAAGAGAAGATGAAA+AGG | + | tig0025848:38644-38663 | Msa1425400:intergenic | 30.0% | |
| TGTAATAACAAGTTGTCTCA+TGG | + | tig0025848:38708-38727 | Msa1425400:intergenic | 30.0% | |
| TTTATGTCCTAAACCATTGA+TGG | - | tig0025848:38844-38863 | Msa1425400:intron | 30.0% | |
| !! | TGAAATGAAGAGCATTCAAT+TGG | - | tig0025848:38928-38947 | Msa1425400:intron | 30.0% |
| AGAAAATTTAAGAGCTAACC+TGG | + | tig0025848:39056-39075 | Msa1425400:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | - | tig0025848:39106-39125 | Msa1425400:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | - | tig0025848:39107-39126 | Msa1425400:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | - | tig0025848:39131-39150 | Msa1425400:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | - | tig0025848:39197-39216 | Msa1425400:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | - | tig0025848:39233-39252 | Msa1425400:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | - | tig0025848:39316-39335 | Msa1425400:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | + | tig0025848:39472-39491 | Msa1425400:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | + | tig0025848:39693-39712 | Msa1425400:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | - | tig0025848:39709-39728 | Msa1425400:intron | 30.0% | |
| TAGGCTTGAATGATTCTATT+TGG | - | tig0025848:39800-39819 | Msa1425400:intron | 30.0% | |
| AGGCTTGAATGATTCTATTT+GGG | - | tig0025848:39801-39820 | Msa1425400:intron | 30.0% | |
| AGAAAATTTAAGAGCTAACC+TGG | + | tig0025848:39056-39075 | Msa1425400:intergenic | 30.0% | |
| TTAATACTGGAGACTATTTG+AGG | - | tig0025848:39106-39125 | Msa1425400:intron | 30.0% | |
| TAATACTGGAGACTATTTGA+GGG | - | tig0025848:39107-39126 | Msa1425400:intron | 30.0% | |
| AACATAGTACTTGTTCTTGT+TGG | - | tig0025848:39131-39150 | Msa1425400:intron | 30.0% | |
| ACATTTGAGCTTACATCTTA+CGG | - | tig0025848:39197-39216 | Msa1425400:intron | 30.0% | |
| TTGACTAAAAAAGACCTGTT+TGG | - | tig0025848:39233-39252 | Msa1425400:intron | 30.0% | |
| AGGCTAATTCTAGTAGTTTA+TGG | - | tig0025848:39316-39335 | Msa1425400:intron | 30.0% | |
| AAGAGACAATTATTGTGAGA+AGG | + | tig0025848:39472-39491 | Msa1425400:intergenic | 30.0% | |
| ! | ACTCGTTTAAGATTTATGCA+CGG | + | tig0025848:39693-39712 | Msa1425400:intergenic | 30.0% |
| GAGTATTATTTAGAGAAGGA+GGG | - | tig0025848:39709-39728 | Msa1425400:intron | 30.0% | |
| ATAATCATTCCTCACTAACT+TGG | + | tig0025848:40757-40776 | Msa1425400:intergenic | 30.0% | |
| AACAAGTGCTTGCAAAAATT+TGG | - | tig0025848:40824-40843 | Msa1425400:intron | 30.0% | |
| ATTCCAAATTCTAAGTCACA+GGG | + | tig0025848:40856-40875 | Msa1425400:intergenic | 30.0% | |
| GCAACAATTAGGATCAAAAA+AGG | + | tig0025848:41026-41045 | Msa1425400:intergenic | 30.0% | |
| !! | GTTATTTCTACACATGTTCA+TGG | - | tig0025848:41157-41176 | Msa1425400:intron | 30.0% |
| GCAAAGATTAGAAGATAATG+GGG | + | tig0025848:41410-41429 | Msa1425400:intergenic | 30.0% | |
| ! | CATCTTTTGTGTACTACTTT+TGG | - | tig0025848:41429-41448 | Msa1425400:intron | 30.0% |
| AAGCTGCATATTGAGTATTT+GGG | + | tig0025848:41534-41553 | Msa1425400:intergenic | 30.0% | |
| TAAGCTGCATATTGAGTATT+TGG | + | tig0025848:41535-41554 | Msa1425400:intergenic | 30.0% | |
| ! | CTTATTGTTGTTCAGTATAC+TGG | - | tig0025848:42023-42042 | Msa1425400:CDS | 30.0% |
| ATGATAGATGAGATGTCAGA+AGG | + | tig0025848:37959-37978 | Msa1425400:intergenic | 35.0% | |
| !! | ATCCTTTTTGGTAGGAATGT+TGG | + | tig0025848:38002-38021 | Msa1425400:intergenic | 35.0% |
| !! | AGATAGAGATCCTTTTTGGT+AGG | + | tig0025848:38010-38029 | Msa1425400:intergenic | 35.0% |
| ! | AGCAAGATAGAGATCCTTTT+TGG | + | tig0025848:38014-38033 | Msa1425400:intergenic | 35.0% |
| TATCATGATCGATGATGAGA+GGG | + | tig0025848:38048-38067 | Msa1425400:intergenic | 35.0% | |
| TTATCATGATCGATGATGAG+AGG | + | tig0025848:38049-38068 | Msa1425400:intergenic | 35.0% | |
| CATCGATCATGATAAAAAGG+TGG | - | tig0025848:38054-38073 | Msa1425400:three_prime_UTR | 35.0% | |
| TTTACTAGTGTCTTAGTGCA+TGG | - | tig0025848:38347-38366 | Msa1425400:CDS | 35.0% | |
| ATATAGACCGTAGGATTTAG+TGG | - | tig0025848:38421-38440 | Msa1425400:CDS | 35.0% | |
| !!! | TAGTGGTAGTTTTTTCTACG+AGG | - | tig0025848:38438-38457 | Msa1425400:CDS | 35.0% |
| ATGGTATCCATCAATGGTTT+AGG | + | tig0025848:38854-38873 | Msa1425400:intergenic | 35.0% | |
| TAAACTCCATTATCCATCGA+TGG | + | tig0025848:38873-38892 | Msa1425400:intergenic | 35.0% | |
| !!! | CAACTGTTTACACCGATTTT+TGG | + | tig0025848:38901-38920 | Msa1425400:intergenic | 35.0% |
| CAAAAATCGGTGTAAACAGT+TGG | - | tig0025848:38899-38918 | Msa1425400:intron | 35.0% | |
| ATTCAATTGGAGAGAAAGAG+TGG | - | tig0025848:38941-38960 | Msa1425400:intron | 35.0% | |
| TAGATCTCTTGCCATTGTTT+GGG | - | tig0025848:38988-39007 | Msa1425400:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | - | tig0025848:39108-39127 | Msa1425400:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | + | tig0025848:39157-39176 | Msa1425400:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | + | tig0025848:39167-39186 | Msa1425400:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | - | tig0025848:39166-39185 | Msa1425400:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | + | tig0025848:39250-39269 | Msa1425400:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | - | tig0025848:39296-39315 | Msa1425400:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | + | tig0025848:39468-39487 | Msa1425400:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | - | tig0025848:39708-39727 | Msa1425400:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | + | tig0025848:39778-39797 | Msa1425400:intergenic | 35.0% | |
| GGCTTGAATGATTCTATTTG+GGG | - | tig0025848:39802-39821 | Msa1425400:intron | 35.0% | |
| TGATTTCTATGCATGATTCC+AGG | - | tig0025848:39848-39867 | Msa1425400:intron | 35.0% | |
| AATACTGGAGACTATTTGAG+GGG | - | tig0025848:39108-39127 | Msa1425400:intron | 35.0% | |
| TAATCAGTGATGGCTTGATT+CGG | + | tig0025848:39157-39176 | Msa1425400:intergenic | 35.0% | |
| AAACAGATCCTAATCAGTGA+TGG | + | tig0025848:39167-39186 | Msa1425400:intergenic | 35.0% | |
| ! | ATCACTGATTAGGATCTGTT+TGG | - | tig0025848:39166-39185 | Msa1425400:intron | 35.0% |
| CAAAATGACAGTTACCAAAC+AGG | + | tig0025848:39250-39269 | Msa1425400:intergenic | 35.0% | |
| !!! | AGCTTATAGCGTGTTTTGAT+AGG | - | tig0025848:39296-39315 | Msa1425400:intron | 35.0% |
| GACAATTATTGTGAGAAGGA+TGG | + | tig0025848:39468-39487 | Msa1425400:intergenic | 35.0% | |
| CGAGTATTATTTAGAGAAGG+AGG | - | tig0025848:39708-39727 | Msa1425400:intron | 35.0% | |
| AAAAAGGACATAACTGTGGA+TGG | + | tig0025848:39778-39797 | Msa1425400:intergenic | 35.0% | |
| CAGTAATTGATCGCTAACAT+GGG | + | tig0025848:40637-40656 | Msa1425400:intergenic | 35.0% | |
| ACAGTAATTGATCGCTAACA+TGG | + | tig0025848:40638-40657 | Msa1425400:intergenic | 35.0% | |
| ! | TTACTGTTGATGAGTTCTCT+TGG | - | tig0025848:40651-40670 | Msa1425400:intron | 35.0% |
| ! | TACTGTTGATGAGTTCTCTT+GGG | - | tig0025848:40652-40671 | Msa1425400:intron | 35.0% |
| TCTACTAATCCAAGTTAGTG+AGG | - | tig0025848:40745-40764 | Msa1425400:intron | 35.0% | |
| GCACTTGTTTGACTGAATTT+GGG | + | tig0025848:40813-40832 | Msa1425400:intergenic | 35.0% | |
| AGCACTTGTTTGACTGAATT+TGG | + | tig0025848:40814-40833 | Msa1425400:intergenic | 35.0% | |
| GATTCCAAATTCTAAGTCAC+AGG | + | tig0025848:40857-40876 | Msa1425400:intergenic | 35.0% | |
| GATACTTAGGTGAAGTGATA+TGG | + | tig0025848:40887-40906 | Msa1425400:intergenic | 35.0% | |
| GATATGTGTTGAGGATACTT+AGG | + | tig0025848:40900-40919 | Msa1425400:intergenic | 35.0% | |
| CTTGGATGCAAAAGATAGTT+GGG | + | tig0025848:40934-40953 | Msa1425400:intergenic | 35.0% | |
| ACTTGGATGCAAAAGATAGT+TGG | + | tig0025848:40935-40954 | Msa1425400:intergenic | 35.0% | |
| TGTCGAGTACTTCATCATTA+AGG | - | tig0025848:41278-41297 | Msa1425400:intron | 35.0% | |
| !! | AGATTAGAAGATAATGGGGA+AGG | + | tig0025848:41406-41425 | Msa1425400:intergenic | 35.0% |
| !! | TTTGTGTACTACTTTTGGAC+AGG | - | tig0025848:41434-41453 | Msa1425400:intron | 35.0% |
| AGCTGCATATTGAGTATTTG+GGG | + | tig0025848:41533-41552 | Msa1425400:intergenic | 35.0% | |
| !! | AGACAATTTTAGTACTACGC+TGG | + | tig0025848:41633-41652 | Msa1425400:intergenic | 35.0% |
| ! | ACTCTTTCATTTTCTATGCC+TGG | + | tig0025848:41772-41791 | Msa1425400:intergenic | 35.0% |
| TCATCTGTATCAGATTCATC+TGG | + | tig0025848:41795-41814 | Msa1425400:intergenic | 35.0% | |
| ATGAATCTGATACAGATGAG+TGG | - | tig0025848:41796-41815 | Msa1425400:intron | 35.0% | |
| TTGTTGAAGGAATTGAAGTC+AGG | - | tig0025848:41848-41867 | Msa1425400:intron | 35.0% | |
| TTGCATAGTTCAGTGAATGT+TGG | + | tig0025848:41892-41911 | Msa1425400:intergenic | 35.0% | |
| AACATTCACTGAACTATGCA+AGG | - | tig0025848:41891-41910 | Msa1425400:intron | 35.0% | |
| ACATTCACTGAACTATGCAA+GGG | - | tig0025848:41892-41911 | Msa1425400:intron | 35.0% | |
| ! | TGGATATCTTTGTTGTGTTG+TGG | - | tig0025848:42048-42067 | Msa1425400:CDS | 35.0% |
| AAAACGATTCCATACAGCGT+CGG | + | tig0025848:37933-37952 | Msa1425400:intergenic | 40.0% | |
| TTTGGTAGGAATGTTGGCAA+GGG | + | tig0025848:37996-38015 | Msa1425400:intergenic | 40.0% | |
| ! | TTTTGGTAGGAATGTTGGCA+AGG | + | tig0025848:37997-38016 | Msa1425400:intergenic | 40.0% |
| TGCCAACATTCCTACCAAAA+AGG | - | tig0025848:37997-38016 | Msa1425400:three_prime_UTR | 40.0% | |
| AGGTGGTATTCTTCTTCCTA+AGG | - | tig0025848:38071-38090 | Msa1425400:exon | 40.0% | |
| ! | TATGTTTTCGACAAGGCAGA+TGG | - | tig0025848:38171-38190 | Msa1425400:CDS | 40.0% |
| ! | ATGTTTTCGACAAGGCAGAT+GGG | - | tig0025848:38172-38191 | Msa1425400:CDS | 40.0% |
| CTTGTCTTTGGTCGAAATTG+CGG | + | tig0025848:38260-38279 | Msa1425400:intergenic | 40.0% | |
| AATTGCAGGAATGTAAAGGG+TGG | + | tig0025848:38583-38602 | Msa1425400:intergenic | 40.0% | |
| AGGACATAAATGTCGATCGA+TGG | + | tig0025848:38834-38853 | Msa1425400:intergenic | 40.0% | |
| TGGATACCATCGATGGATAA+TGG | - | tig0025848:38864-38883 | Msa1425400:intron | 40.0% | |
| CTAGATCTCTTGCCATTGTT+TGG | - | tig0025848:38987-39006 | Msa1425400:intron | 40.0% | |
| AGATCTCTTGCCATTGTTTG+GGG | - | tig0025848:38989-39008 | Msa1425400:intron | 40.0% | |
| TCTATCATCACCCCAAACAA+TGG | + | tig0025848:39002-39021 | Msa1425400:intergenic | 40.0% | |
| TGATTTCTATGCCTGATTCC+AGG | - | tig0025848:39035-39054 | Msa1425400:intron | 40.0% | |
| TTAAGAGCTAACCTGGAATC+AGG | + | tig0025848:39049-39068 | Msa1425400:intergenic | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | - | tig0025848:39156-39175 | Msa1425400:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | - | tig0025848:39170-39189 | Msa1425400:intron | 40.0% | |
| ! | GAATCAAGCCATCACTGATT+AGG | - | tig0025848:39156-39175 | Msa1425400:intron | 40.0% |
| CTGATTAGGATCTGTTTGGT+TGG | - | tig0025848:39170-39189 | Msa1425400:intron | 40.0% | |
| AGTTCTCTTGGGCATTCAAA+AGG | - | tig0025848:40663-40682 | Msa1425400:intron | 40.0% | |
| AGTCAGTTAATTCGTAGCAG+AGG | + | tig0025848:40718-40737 | Msa1425400:intergenic | 40.0% | |
| ! | TGAATTTGGGTTTGAACCTG+AGG | + | tig0025848:40800-40819 | Msa1425400:intergenic | 40.0% |
| TGTCCCTGTGACTTAGAATT+TGG | - | tig0025848:40850-40869 | Msa1425400:intron | 40.0% | |
| ACTTAGGTGAAGTGATATGG+AGG | + | tig0025848:40884-40903 | Msa1425400:intergenic | 40.0% | |
| ! | AAGAGCATGGATATGTGTTG+AGG | + | tig0025848:40909-40928 | Msa1425400:intergenic | 40.0% |
| ACTTCATCATTAAGGACTGC+TGG | - | tig0025848:41286-41305 | Msa1425400:intron | 40.0% | |
| TGTAGTGAGCAAGACAGAAA+TGG | + | tig0025848:41348-41367 | Msa1425400:intergenic | 40.0% | |
| GGAAGGAATCTCAGAAAATG+GGG | + | tig0025848:41389-41408 | Msa1425400:intergenic | 40.0% | |
| GGGAAGGAATCTCAGAAAAT+GGG | + | tig0025848:41390-41409 | Msa1425400:intergenic | 40.0% | |
| !! | CTAAGCTTGTTGATGTGTGT+TGG | - | tig0025848:41470-41489 | Msa1425400:intron | 40.0% |
| !! | GTGTGTTGGCTTGAAATTCA+TGG | - | tig0025848:41484-41503 | Msa1425400:intron | 40.0% |
| CATATTGAGTATTTGGGGAC+AGG | + | tig0025848:41528-41547 | Msa1425400:intergenic | 40.0% | |
| TGGATTTCAGAACTGTTCTG+CGG | - | tig0025848:41582-41601 | Msa1425400:intron | 40.0% | |
| TGTTCTGCGGATTTATCAGT+TGG | - | tig0025848:41595-41614 | Msa1425400:intron | 40.0% | |
| !! | GATTTATCAGTTGGTGTCGA+AGG | - | tig0025848:41604-41623 | Msa1425400:intron | 40.0% |
| TGTCTGTTTGGATCCAAATG+TGG | - | tig0025848:41648-41667 | Msa1425400:intron | 40.0% | |
| TGTTTGGATCCAAATGTGGA+AGG | - | tig0025848:41652-41671 | Msa1425400:intron | 40.0% | |
| TGAGGATTACCTTCCACATT+TGG | + | tig0025848:41664-41683 | Msa1425400:intergenic | 40.0% | |
| AATCCTACTACTGTGTTGTG+CGG | + | tig0025848:41688-41707 | Msa1425400:intergenic | 40.0% | |
| AATCTGATACAGATGAGTGG+TGG | - | tig0025848:41799-41818 | Msa1425400:intron | 40.0% | |
| CATTCACTGAACTATGCAAG+GGG | - | tig0025848:41893-41912 | Msa1425400:intron | 40.0% | |
| TGTTGTTCAGTATACTGGGA+TGG | - | tig0025848:42028-42047 | Msa1425400:CDS | 40.0% | |
| AATCAACAGACATCAGGAAG+AGG | + | tig0025848:42078-42097 | Msa1425400:intergenic | 40.0% | |
| TGGAACAATCAACAGACATC+AGG | + | tig0025848:42084-42103 | Msa1425400:intergenic | 40.0% | |
| GACAGAGATTCAGGATTTGC+CGG | - | tig0025848:37814-37833 | Msa1425400:three_prime_UTR | 45.0% | |
| AGTTGTACGAGAGACTATGG+TGG | + | tig0025848:37852-37871 | Msa1425400:intergenic | 45.0% | |
| TGGAGTTGTACGAGAGACTA+TGG | + | tig0025848:37855-37874 | Msa1425400:intergenic | 45.0% | |
| !! | TCGGAAAGTGTTGGAAACGA+CGG | + | tig0025848:37897-37916 | Msa1425400:intergenic | 45.0% |
| GACATGCTGCAAAGTGCAAA+GGG | - | tig0025848:38202-38221 | Msa1425400:CDS | 45.0% | |
| CGCAATTTCGACCAAAGACA+AGG | - | tig0025848:38258-38277 | Msa1425400:CDS | 45.0% | |
| CATGAACCCATATGCTCTTG+TGG | + | tig0025848:38536-38555 | Msa1425400:intergenic | 45.0% | |
| AGAGCATATGGGTTCATGAG+TGG | - | tig0025848:38538-38557 | Msa1425400:intron | 45.0% | |
| AAGTGATGTCATAAACCGCG+AGG | - | tig0025848:38774-38793 | Msa1425400:intron | 45.0% | |
| CCATCGATGGTATCCATCAA+TGG | + | tig0025848:38860-38879 | Msa1425400:intergenic | 45.0% | |
| ! | CCATTGATGGATACCATCGA+TGG | - | tig0025848:38857-38876 | Msa1425400:intron | 45.0% |
| CAGTTAATTCGTAGCAGAGG+AGG | + | tig0025848:40715-40734 | Msa1425400:intergenic | 45.0% | |
| AAACTCATAGCAACCACCTC+AGG | - | tig0025848:40781-40800 | Msa1425400:intron | 45.0% | |
| ! | ATTTGGGTTTGAACCTGAGG+TGG | + | tig0025848:40797-40816 | Msa1425400:intergenic | 45.0% |
| AGATAGTTGGGTGAAGAGCA+TGG | + | tig0025848:40922-40941 | Msa1425400:intergenic | 45.0% | |
| GCATCCAAGTTCAGCTTGAT+TGG | - | tig0025848:40945-40964 | Msa1425400:CDS | 45.0% | |
| GGATCCAATCAAGCTGAACT+TGG | + | tig0025848:40952-40971 | Msa1425400:intergenic | 45.0% | |
| GCTACAGAAGAAGGATCTTG+GGG | + | tig0025848:40973-40992 | Msa1425400:intergenic | 45.0% | |
| CGCTACAGAAGAAGGATCTT+GGG | + | tig0025848:40974-40993 | Msa1425400:intergenic | 45.0% | |
| ! | GCAGTTTTTGCTTCATCTGC+AGG | - | tig0025848:40996-41015 | Msa1425400:intron | 45.0% |
| TCATCATTAAGGACTGCTGG+TGG | - | tig0025848:41289-41308 | Msa1425400:intron | 45.0% | |
| ! | GGAAAAGCTGATGATGTTCG+TGG | - | tig0025848:41319-41338 | Msa1425400:intron | 45.0% |
| GGGGAAGGAATCTCAGAAAA+TGG | + | tig0025848:41391-41410 | Msa1425400:intergenic | 45.0% | |
| CAACAAGCTTAGCGACTTCA+GGG | + | tig0025848:41462-41481 | Msa1425400:intergenic | 45.0% | |
| TCAACAAGCTTAGCGACTTC+AGG | + | tig0025848:41463-41482 | Msa1425400:intergenic | 45.0% | |
| !! | TTATCAGTTGGTGTCGAAGG+TGG | - | tig0025848:41607-41626 | Msa1425400:intron | 45.0% |
| ATGGGTGAGTTCTTCAATCC+AGG | - | tig0025848:41751-41770 | Msa1425400:intron | 45.0% | |
| AAGAGAGGTCTCGTTGTTGA+AGG | - | tig0025848:41835-41854 | Msa1425400:intron | 45.0% | |
| TGAACTATGCAAGGGGTCTT+GGG | - | tig0025848:41900-41919 | Msa1425400:intron | 45.0% | |
| GAGATTCAGGATTTGCCGGA+AGG | - | tig0025848:37818-37837 | Msa1425400:three_prime_UTR | 50.0% | |
| ATGGTGGCAATGCATCCTTC+CGG | + | tig0025848:37836-37855 | Msa1425400:intergenic | 50.0% | |
| ! | ATTCCATACAGCGTCGGAGT+TGG | + | tig0025848:37927-37946 | Msa1425400:intergenic | 50.0% |
| GTAGGAATGTTGGCAAGGGA+AGG | + | tig0025848:37992-38011 | Msa1425400:intergenic | 50.0% | |
| CGACATGCTGCAAAGTGCAA+AGG | - | tig0025848:38201-38220 | Msa1425400:CDS | 50.0% | |
| GAAGTTGCAATTGGAGCGCA+TGG | - | tig0025848:38292-38311 | Msa1425400:CDS | 50.0% | |
| GAACCCATATGCTCTTGTGG+CGG | + | tig0025848:38533-38552 | Msa1425400:intergenic | 50.0% | |
| GCAGGAATGTAAAGGGTGGT+TGG | + | tig0025848:38579-38598 | Msa1425400:intergenic | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | - | tig0025848:39008-39027 | Msa1425400:intron | 50.0% | |
| GGGGTGATGATAGACGCTAT+TGG | - | tig0025848:39008-39027 | Msa1425400:intron | 50.0% | |
| GCGCTACAGAAGAAGGATCT+TGG | + | tig0025848:40975-40994 | Msa1425400:intergenic | 50.0% | |
| AACTGCAGCGCTACAGAAGA+AGG | + | tig0025848:40982-41001 | Msa1425400:intergenic | 50.0% | |
| GTTCGGTTGCCGCAACAATT+AGG | + | tig0025848:41037-41056 | Msa1425400:intergenic | 50.0% | |
| AGTATTTGGGGACAGGACGA+TGG | + | tig0025848:41521-41540 | Msa1425400:intergenic | 50.0% | |
| GTCCTACTGTGAGAAGCGAT+GGG | - | tig0025848:41713-41732 | Msa1425400:intron | 50.0% | |
| TGGGTGGTTGGAGATTGAGA+TGG | - | tig0025848:41732-41751 | Msa1425400:intron | 50.0% | |
| GGGTGGTTGGAGATTGAGAT+GGG | - | tig0025848:41733-41752 | Msa1425400:intron | 50.0% | |
| ATACAGATGAGTGGTGGTCG+TGG | - | tig0025848:41805-41824 | Msa1425400:intron | 50.0% | |
| CTGAACTATGCAAGGGGTCT+TGG | - | tig0025848:41899-41918 | Msa1425400:intron | 50.0% | |
| CGTACAACTCCAGTTGACGC+CGG | - | tig0025848:37863-37882 | Msa1425400:three_prime_UTR | 55.0% | |
| ! | GGAGGCTGATCGGAAAGTGT+TGG | + | tig0025848:37906-37925 | Msa1425400:intergenic | 55.0% |
| GGAGCGCATGGTGACAAACA+AGG | - | tig0025848:38304-38323 | Msa1425400:CDS | 55.0% | |
| AGGACTGCTGGTGGTCATTG+AGG | - | tig0025848:41298-41317 | Msa1425400:intron | 55.0% | |
| ACTACTGTGTTGTGCGGCTG+AGG | + | tig0025848:41682-41701 | Msa1425400:intergenic | 55.0% | |
| CAGCCGCACAACACAGTAGT+AGG | - | tig0025848:41682-41701 | Msa1425400:intron | 55.0% | |
| CGTCCTACTGTGAGAAGCGA+TGG | - | tig0025848:41712-41731 | Msa1425400:intron | 55.0% | |
| CACCCATCGCTTCTCACAGT+AGG | + | tig0025848:41718-41737 | Msa1425400:intergenic | 55.0% | |
| CTACTGTGAGAAGCGATGGG+TGG | - | tig0025848:41716-41735 | Msa1425400:intron | 55.0% | |
| TGTGAGAAGCGATGGGTGGT+TGG | - | tig0025848:41720-41739 | Msa1425400:intron | 55.0% | |
| GGAAACGACGGAGAGTCTGC+CGG | + | tig0025848:37885-37904 | Msa1425400:intergenic | 60.0% | |
| CGTCGGAGTTGGAGGCTGAT+CGG | + | tig0025848:37916-37935 | Msa1425400:intergenic | 60.0% | |
| ! | CCATACAGCGTCGGAGTTGG+AGG | + | tig0025848:37924-37943 | Msa1425400:intergenic | 60.0% |
| CCTCCAACTCCGACGCTGTA+TGG | - | tig0025848:37921-37940 | Msa1425400:three_prime_UTR | 60.0% | |
| ATATGCTCTTGTGGCGGCGG+GGG | + | tig0025848:38527-38546 | Msa1425400:intergenic | 60.0% | |
| CATATGCTCTTGTGGCGGCG+GGG | + | tig0025848:38528-38547 | Msa1425400:intergenic | 60.0% | |
| CCATATGCTCTTGTGGCGGC+GGG | + | tig0025848:38529-38548 | Msa1425400:intergenic | 60.0% | |
| CCCATATGCTCTTGTGGCGG+CGG | + | tig0025848:38530-38549 | Msa1425400:intergenic | 60.0% | |
| ! | CCGCCGCCACAAGAGCATAT+GGG | - | tig0025848:38527-38546 | Msa1425400:intron | 60.0% |
| CAGATGAGTGGTGGTCGTGG+TGG | - | tig0025848:41808-41827 | Msa1425400:intron | 60.0% | |
| TGAGTGGTGGTCGTGGTGGT+TGG | - | tig0025848:41812-41831 | Msa1425400:intron | 60.0% | |
| GGTCGTGGTGGTTGGAAGAG+AGG | - | tig0025848:41820-41839 | Msa1425400:intron | 60.0% | |
| ATGCAAGGGGTCTTGGGTCG+TGG | - | tig0025848:41906-41925 | Msa1425400:intron | 60.0% | |
| GAGAGTCTGCCGGCGTCAAC+TGG | + | tig0025848:37875-37894 | Msa1425400:intergenic | 65.0% | |
| ! | CCCGCCGCCACAAGAGCATA+TGG | - | tig0025848:38526-38545 | Msa1425400:intron | 65.0% |
| GGGGGATCGTTCAAGCCTCG+CGG | + | tig0025848:38792-38811 | Msa1425400:intergenic | 65.0% | |
| ! | TCTTGTGGCGGCGGGGGTGT+TGG | + | tig0025848:38521-38540 | Msa1425400:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025848 | gene | 37812 | 42156 | 37812 | ID=Msa1425400;Name=Msa1425400 |
| tig0025848 | mRNA | 37812 | 42156 | 37812 | ID=Msa1425400-mRNA-1;Parent=Msa1425400;Name=Msa1425400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.33|1|1|1|3|268|240 |
| tig0025848 | exon | 37812 | 38512 | 37812 | ID=Msa1425400-mRNA-1:exon:4267;Parent=Msa1425400-mRNA-1 |
| tig0025848 | exon | 40912 | 40977 | 40912 | ID=Msa1425400-mRNA-1:exon:4266;Parent=Msa1425400-mRNA-1 |
| tig0025848 | exon | 41933 | 42156 | 41933 | ID=Msa1425400-mRNA-1:exon:4265;Parent=Msa1425400-mRNA-1 |
| tig0025848 | CDS | 41933 | 42156 | 41933 | ID=Msa1425400-mRNA-1:cds;Parent=Msa1425400-mRNA-1 |
| tig0025848 | CDS | 40912 | 40977 | 40912 | ID=Msa1425400-mRNA-1:cds;Parent=Msa1425400-mRNA-1 |
| tig0025848 | CDS | 38080 | 38512 | 38080 | ID=Msa1425400-mRNA-1:cds;Parent=Msa1425400-mRNA-1 |
| tig0025848 | three_prime_UTR | 37812 | 38079 | 37812 | ID=Msa1425400-mRNA-1:three_prime_utr;Parent=Msa1425400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
