AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0582270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582270 MtrunA17_Chr4g0059171 97.333 300 8 0 1 300 1 300 0.0 608
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0582270 AT5G62840.1 70.260 269 74 2 32 300 35 297 2.12e-138 393
Msa0582270 AT5G62840.2 76.339 224 53 0 77 300 9 232 2.06e-130 370

Find 109 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAACCCTCTCTTATTAAT+TGG 0.167996 4_2:-585694 Msa0582270:three_prime_UTR
TTTGAGCTACATTGTGTAAA+TGG 0.201252 4_2:+585718 None:intergenic
TTAAACTGACTGAAGATAAT+TGG 0.208203 4_2:-586159 Msa0582270:three_prime_UTR
AGAATCAGAGTTTGAGAGTA+TGG 0.209979 4_2:-587778 Msa0582270:CDS
ACCTTATTATACCAGATAAA+TGG 0.215021 4_2:-586273 Msa0582270:three_prime_UTR
TTTCTTGATGCCCGGGGATT+AGG 0.240707 4_2:-587439 Msa0582270:CDS
GGAAGACATGGTGGTTGTTC+TGG 0.260928 4_2:+587990 None:intergenic
GAGGAGGTTGTTGAGTTGTT+TGG 0.273887 4_2:+587965 None:intergenic
TAAAAGAGCTAATTACAATT+TGG 0.279975 4_2:+586304 None:intergenic
AGGAGGTTGTTGAGTTGTTT+GGG 0.284336 4_2:+587966 None:intergenic
GCTATACATGTCCATTTATC+TGG 0.284457 4_2:+586262 None:intergenic
TCCATTTATCTGGTATAATA+AGG 0.292604 4_2:+586272 None:intergenic
TTAATTGTAACAATGTCTTT+TGG 0.304219 4_2:-585744 Msa0582270:three_prime_UTR
GTGATAATAATTGTTGGATT+TGG 0.325911 4_2:-587644 Msa0582270:CDS
TGATTTCAGTTATATTGTTC+CGG 0.332744 4_2:-587470 Msa0582270:intron
CGTACTTTGCTTATTTGCTT+TGG 0.336461 4_2:+585897 None:intergenic
GATAATGGTTTATCTGATAG+AGG 0.351718 4_2:-587717 Msa0582270:CDS
GTCAATCCTTCAGGCTGGTT+TGG 0.352871 4_2:-586640 Msa0582270:CDS
CTAATTACAATTTGGTAGCT+TGG 0.355446 4_2:+586312 None:intergenic
AGTCCACTGGCAATGGCTAC+TGG 0.359432 4_2:+587855 None:intergenic
CTGTTAATTCTATTACTAGA+AGG 0.363981 4_2:-587575 Msa0582270:intron
AGGGTTTGACACGTGTTATT+TGG 0.364172 4_2:+588026 None:intergenic
ACATCTGCAACACTCTCATT+TGG 0.372094 4_2:+586753 None:intergenic
GGATAACTTGTCAATCCTTC+AGG 0.382464 4_2:-586649 Msa0582270:CDS
TGAAGTGAGGTTGAAGTTGA+AGG 0.399429 4_2:+587902 None:intergenic
CGTTATAGTCTCGCCAGATT+CGG 0.401884 4_2:-586670 Msa0582270:CDS
AATGGCTACTGGGTCTGAAA+TGG 0.406139 4_2:+587866 None:intergenic
AGATTACTTGTCTTTCAGTT+TGG 0.412826 4_2:-585847 Msa0582270:three_prime_UTR
CACCAGCGTATTGAGTTTCA+AGG 0.416878 4_2:+586700 None:intergenic
CAGTACTATCTTGTGAGGTC+TGG 0.429270 4_2:-587801 Msa0582270:CDS
ATTTGGAGTTCCGTCATCAA+TGG 0.433255 4_2:+586770 None:intergenic
GAATCAGAGTTTGAGAGTAT+GGG 0.435737 4_2:-587777 Msa0582270:CDS
ATTCATCGTTGCTTATGATA+AGG 0.437214 4_2:-588111 Msa0582270:five_prime_UTR
TTCAAGGATTGACATGAGTT+GGG 0.442821 4_2:+586716 None:intergenic
GCATCAAGAAAGCTGTATTC+CGG 0.443393 4_2:+587451 None:intergenic
ATTGACAAGTTATCCGAATC+TGG 0.446235 4_2:+586657 None:intergenic
TTTCAAGGATTGACATGAGT+TGG 0.449172 4_2:+586715 None:intergenic
CATGAAAATGCATGGAATAG+AGG 0.461728 4_2:-586078 Msa0582270:three_prime_UTR
TGAGAAGGTGGCGACGGTGG+AGG 0.463378 4_2:+587946 None:intergenic
TTGATGACCAGAAGCGTTGT+GGG 0.464558 4_2:-585872 Msa0582270:three_prime_UTR
GCGAAAACCTCTGTGGATAA+TGG 0.469059 4_2:-587732 Msa0582270:CDS
TAGTGGTAGTCCATCGGTAA+TGG 0.469091 4_2:-585814 Msa0582270:three_prime_UTR
AATACAGCTTTCTTGATGCC+CGG 0.469191 4_2:-587447 Msa0582270:CDS
TGCACCTGGTGAAGTTCGCC+AGG 0.480792 4_2:-586392 Msa0582270:CDS
TTTGGAGTTCCGTCATCAAT+GGG 0.482434 4_2:+586771 None:intergenic
GGAGAAACAAATATAGTAGC+AGG 0.485495 4_2:-586037 Msa0582270:three_prime_UTR
CTTCATAAGCACCTAATCCC+CGG 0.488075 4_2:+587428 None:intergenic
GTGCTTGTGATAATAATTGT+TGG 0.488939 4_2:-587650 Msa0582270:CDS
ATGGCTACTGGGTCTGAAAT+GGG 0.492102 4_2:+587867 None:intergenic
ATACAGCTTTCTTGATGCCC+GGG 0.493819 4_2:-587446 Msa0582270:CDS
GGAGATGGTGAATGCGGTTG+TGG 0.499094 4_2:+587923 None:intergenic
CTTGTAAGTAGGAATGTCAT+TGG 0.501498 4_2:+586363 None:intergenic
AGTGGTAGTCCATCGGTAAT+GGG 0.504086 4_2:-585813 Msa0582270:three_prime_UTR
ATCCTTCAGGCTGGTTTGGT+AGG 0.505388 4_2:-586636 Msa0582270:CDS
ATCAAGATATATGCTATAGC+AGG 0.510113 4_2:-586006 Msa0582270:three_prime_UTR
GTCCACTGGCAATGGCTACT+GGG 0.514678 4_2:+587856 None:intergenic
GAGCATTTATATACAGCAGA+TGG 0.517333 4_2:+586334 None:intergenic
AACTTGTCAATCCTTCAGGC+TGG 0.518288 4_2:-586645 Msa0582270:CDS
TTAGTTACCTTCGCAAGTCT+AGG 0.522431 4_2:+586613 None:intergenic
ATTAAATTCATGAAAATGCA+TGG 0.524111 4_2:-586086 Msa0582270:three_prime_UTR
GAAGGTGGCGACGGTGGAGG+AGG 0.525530 4_2:+587949 None:intergenic
ATCGTTGCTTATGATAAGGC+AGG 0.535089 4_2:-588107 Msa0582270:five_prime_UTR
TGGTGAGAAGGTGGCGACGG+TGG 0.535642 4_2:+587943 None:intergenic
AGTTGTTTGGGAGGAAGACA+TGG 0.536257 4_2:+587978 None:intergenic
TTCTGGCTGAGAAAATGAAA+GGG 0.541301 4_2:+588007 None:intergenic
GATGAAGAGTCCACTGGCAA+TGG 0.543180 4_2:+587848 None:intergenic
CAGACCTCACAAGATAGTAC+TGG 0.547671 4_2:+587802 None:intergenic
TTCATAAGCACCTAATCCCC+GGG 0.556032 4_2:+587429 None:intergenic
TCAACCTGGCGAACTTCACC+AGG 0.560030 4_2:+586388 None:intergenic
TTTGATGACCAGAAGCGTTG+TGG 0.560922 4_2:-585873 Msa0582270:three_prime_UTR
GATGGAGGCATCTTGTAAGT+AGG 0.561832 4_2:+586352 None:intergenic
TTTCTCCAATTAATAAGAGA+GGG 0.564698 4_2:+585689 None:intergenic
GTTCTGGCTGAGAAAATGAA+AGG 0.568548 4_2:+588006 None:intergenic
AGGTGACGGAAATGATATTG+AGG 0.568857 4_2:-586058 Msa0582270:three_prime_UTR
GTTTCTCCAATTAATAAGAG+AGG 0.570676 4_2:+585688 None:intergenic
CGGGGATTAGGTGCTTATGA+AGG 0.572396 4_2:-587427 Msa0582270:CDS
TAAGCTCTCTGAGTAATAGC+AGG 0.573762 4_2:+587621 None:intergenic
GTTCCGTCATCAATGGGAGG+AGG 0.579788 4_2:+586777 None:intergenic
TTGTGGTGAGAAGGTGGCGA+CGG 0.590124 4_2:+587940 None:intergenic
GGCCTACCAAACCAGCCTGA+AGG 0.599102 4_2:+586634 None:intergenic
AGGTTGTTGAGTTGTTTGGG+AGG 0.599491 4_2:+587969 None:intergenic
GACCCAGTAGCCATTGCCAG+TGG 0.599668 4_2:-587858 Msa0582270:CDS
TGGTAGGCCTAGACTTGCGA+AGG 0.604829 4_2:-586620 Msa0582270:intron
TGAATGCGGTTGTGGTGAGA+AGG 0.616152 4_2:+587931 None:intergenic
ATAATGGTTTATCTGATAGA+GGG 0.616419 4_2:-587716 Msa0582270:CDS
AATGCATGGAATAGAGGTGA+CGG 0.617806 4_2:-586072 Msa0582270:three_prime_UTR
TATCTGGTATAATAAGGTGA+AGG 0.618225 4_2:+586278 None:intergenic
GTGCAGATATATGCATCAGA+TGG 0.620930 4_2:-586819 Msa0582270:intron
ATCCTTGAAACTCAATACGC+TGG 0.621540 4_2:-586702 Msa0582270:CDS
TGATGACCAGAAGCGTTGTG+GGG 0.624923 4_2:-585871 Msa0582270:three_prime_UTR
TGGGTCTGAAATGGGAAGTG+TGG 0.624924 4_2:+587875 None:intergenic
GATGACCAGAAGCGTTGTGG+GGG 0.625819 4_2:-585870 Msa0582270:three_prime_UTR
TGTTTGGGAGGAAGACATGG+TGG 0.625868 4_2:+587981 None:intergenic
GAGGTTGAAGTTGAAGGAGA+TGG 0.626119 4_2:+587908 None:intergenic
AAACCTCCTCCCATTGATGA+CGG 0.626640 4_2:-586780 Msa0582270:CDS
TACAGCTTTCTTGATGCCCG+GGG 0.627678 4_2:-587445 Msa0582270:CDS
AGGCATGATGAAGAGTCCAC+TGG 0.631288 4_2:+587842 None:intergenic
CCCTGTGGCGAAAACCTCTG+TGG 0.637394 4_2:-587739 Msa0582270:CDS
GAATGTCATTGGTATCAACC+TGG 0.639678 4_2:+586374 None:intergenic
GAAACAAATATAGTAGCAGG+AGG 0.641743 4_2:-586034 Msa0582270:three_prime_UTR
TGTCTCAAATTTCAGGCACA+GGG 0.642949 4_2:-586425 Msa0582270:intron
CATTTATATACAGCAGATGG+AGG 0.643462 4_2:+586337 None:intergenic
GGAGTTCCGTCATCAATGGG+AGG 0.650140 4_2:+586774 None:intergenic
ATGCGGTTGTGGTGAGAAGG+TGG 0.658744 4_2:+587934 None:intergenic
GTTGAAGGAGATGGTGAATG+CGG 0.660211 4_2:+587917 None:intergenic
AAAACCAGTACTATCTTGTG+AGG 0.679514 4_2:-587806 Msa0582270:CDS
TGTGTGTAGTGGTAGTCCAT+CGG 0.682985 4_2:-585820 Msa0582270:three_prime_UTR
AGATAAACCATTATCCACAG+AGG 0.721820 4_2:+587725 None:intergenic
AGTGATAAACACCAACCCTG+TGG 0.739470 4_2:-587754 Msa0582270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTCTGGTTTTAATTTT+GGG - chr4_2:586283-586302 Msa0582270:three_prime_UTR 20.0%
!! ATCTTATTCATAAGAAACTA+CGG - chr4_2:586726-586745 Msa0582270:CDS 20.0%
!! TTGAACTTCTACTTAAAAAT+GGG - chr4_2:586760-586779 Msa0582270:CDS 20.0%
!! TAAAAGAGCTAATTACAATT+TGG + chr4_2:587489-587508 None:intergenic 20.0%
!!! AACAATTTTATTTTTCTGTC+AGG + chr4_2:587601-587620 None:intergenic 20.0%
!! ATTAAATTCATGAAAATGCA+TGG - chr4_2:587704-587723 Msa0582270:CDS 20.0%
!!! TTAATTGTAACAATGTCTTT+TGG - chr4_2:588046-588065 Msa0582270:exon 20.0%
!!! TATTTGCTATCGCATTTTAA+TGG + chr4_2:585728-585747 None:intergenic 25.0%
! ATAATGGTTTATCTGATAGA+GGG - chr4_2:586074-586093 Msa0582270:three_prime_UTR 25.0%
!!! TGCTTTTGATTTGAAAGAAA+TGG - chr4_2:586117-586136 Msa0582270:three_prime_UTR 25.0%
!!! GCTTTTGATTTGAAAGAAAT+GGG - chr4_2:586118-586137 Msa0582270:three_prime_UTR 25.0%
! GTGATAATAATTGTTGGATT+TGG - chr4_2:586146-586165 Msa0582270:three_prime_UTR 25.0%
! CTGTTAATTCTATTACTAGA+AGG - chr4_2:586215-586234 Msa0582270:three_prime_UTR 25.0%
!!! GTGTTTTCTGGTTTTAATTT+TGG - chr4_2:586282-586301 Msa0582270:three_prime_UTR 25.0%
! TGATTTCAGTTATATTGTTC+CGG - chr4_2:586320-586339 Msa0582270:CDS 25.0%
! AGAGTAAATAAAACAGTACA+TGG + chr4_2:586428-586447 None:intergenic 25.0%
! GTAGTTTCTTATGAATAAGA+TGG + chr4_2:586727-586746 None:intergenic 25.0%
!!! CATTTTTAAGTAGAAGTTCA+AGG + chr4_2:586761-586780 None:intergenic 25.0%
! CTTGAACTTCTACTTAAAAA+TGG - chr4_2:586759-586778 Msa0582270:CDS 25.0%
! TACAATTTCACTTATTGTTG+TGG - chr4_2:586901-586920 Msa0582270:intron 25.0%
! GAGATTAAAAATGTGTGTAA+TGG - chr4_2:586946-586965 Msa0582270:intron 25.0%
! ATTAAAAATGTGTGTAATGG+TGG - chr4_2:586949-586968 Msa0582270:intron 25.0%
! ACTCATATATATAATTGCAG+AGG + chr4_2:587240-587259 None:intergenic 25.0%
! ACCTTATTATACCAGATAAA+TGG - chr4_2:587517-587536 Msa0582270:intron 25.0%
! TCCATTTATCTGGTATAATA+AGG + chr4_2:587521-587540 None:intergenic 25.0%
! TTAAACTGACTGAAGATAAT+TGG - chr4_2:587631-587650 Msa0582270:CDS 25.0%
!! AGATACAATTTTGCTTATTG+TGG - chr4_2:588015-588034 Msa0582270:CDS 25.0%
! TTTCTCCAATTAATAAGAGA+GGG + chr4_2:588104-588123 None:intergenic 25.0%
! AAAAATAAGTGCAACTTACA+TGG + chr4_2:588127-588146 None:intergenic 25.0%
!!! GTAAGTTGCACTTATTTTTT+TGG - chr4_2:588128-588147 Msa0582270:five_prime_UTR 25.0%
!!! CACTTATTTTTTTGGTCAAA+TGG - chr4_2:588136-588155 Msa0582270:five_prime_UTR 25.0%
ATTCATCGTTGCTTATGATA+AGG - chr4_2:585679-585698 Msa0582270:three_prime_UTR 30.0%
!!! CAAGATAGTACTGGTTTTTA+AGG + chr4_2:585982-586001 None:intergenic 30.0%
! GATAATGGTTTATCTGATAG+AGG - chr4_2:586073-586092 Msa0582270:three_prime_UTR 30.0%
GTGCTTGTGATAATAATTGT+TGG - chr4_2:586140-586159 Msa0582270:three_prime_UTR 30.0%
TTACTAGAAGGTTGTTATGT+TGG - chr4_2:586227-586246 Msa0582270:three_prime_UTR 30.0%
!!! GATATTGATGATGTGTTTTC+TGG - chr4_2:586270-586289 Msa0582270:three_prime_UTR 30.0%
GCTATATGATGACTTATAGT+TGG - chr4_2:586454-586473 Msa0582270:intron 30.0%
TAATACATGAGATTCTCGTT+AGG + chr4_2:586558-586577 None:intergenic 30.0%
ATATATAATTGCAGAGGCTT+TGG + chr4_2:587234-587253 None:intergenic 30.0%
TTACTAGTGTCTCAAATTTC+AGG - chr4_2:587358-587377 Msa0582270:intron 30.0%
! CTAATTACAATTTGGTAGCT+TGG + chr4_2:587481-587500 None:intergenic 30.0%
TATCTGGTATAATAAGGTGA+AGG + chr4_2:587515-587534 None:intergenic 30.0%
ATCAAGATATATGCTATAGC+AGG - chr4_2:587784-587803 Msa0582270:CDS 30.0%
AGATTACTTGTCTTTCAGTT+TGG - chr4_2:587943-587962 Msa0582270:CDS 30.0%
TTTGAGCTACATTGTGTAAA+TGG + chr4_2:588075-588094 None:intergenic 30.0%
TTGAACCCTCTCTTATTAAT+TGG - chr4_2:588096-588115 Msa0582270:five_prime_UTR 30.0%
GTTTCTCCAATTAATAAGAG+AGG + chr4_2:588105-588124 None:intergenic 30.0%
!! TTGCTATCGCATTTTAATGG+CGG + chr4_2:585725-585744 None:intergenic 35.0%
! TTCTGGCTGAGAAAATGAAA+GGG + chr4_2:585786-585805 None:intergenic 35.0%
AAAACCAGTACTATCTTGTG+AGG - chr4_2:585984-586003 Msa0582270:three_prime_UTR 35.0%
AGAATCAGAGTTTGAGAGTA+TGG - chr4_2:586012-586031 Msa0582270:three_prime_UTR 35.0%
! GAATCAGAGTTTGAGAGTAT+GGG - chr4_2:586013-586032 Msa0582270:three_prime_UTR 35.0%
AGATAAACCATTATCCACAG+AGG + chr4_2:586068-586087 None:intergenic 35.0%
TGTCACATGTAAACTACAGT+AGG - chr4_2:586482-586501 Msa0582270:intron 35.0%
TCACCTTCTTAATAGTAACC+AGG + chr4_2:586586-586605 None:intergenic 35.0%
AAGGTGATTGAGATTTCAGT+TGG - chr4_2:586599-586618 Msa0582270:intron 35.0%
! ATTGAGATTTCAGTTGGTGT+TGG - chr4_2:586605-586624 Msa0582270:intron 35.0%
TTCAAGGATTGACATGAGTT+GGG + chr4_2:587077-587096 None:intergenic 35.0%
TTTCAAGGATTGACATGAGT+TGG + chr4_2:587078-587097 None:intergenic 35.0%
ATTGACAAGTTATCCGAATC+TGG + chr4_2:587136-587155 None:intergenic 35.0%
CTTGTAAGTAGGAATGTCAT+TGG + chr4_2:587430-587449 None:intergenic 35.0%
CATTTATATACAGCAGATGG+AGG + chr4_2:587456-587475 None:intergenic 35.0%
GAGCATTTATATACAGCAGA+TGG + chr4_2:587459-587478 None:intergenic 35.0%
GCTATACATGTCCATTTATC+TGG + chr4_2:587531-587550 None:intergenic 35.0%
CATGAAAATGCATGGAATAG+AGG - chr4_2:587712-587731 Msa0582270:CDS 35.0%
GGAGAAACAAATATAGTAGC+AGG - chr4_2:587753-587772 Msa0582270:CDS 35.0%
GAAACAAATATAGTAGCAGG+AGG - chr4_2:587756-587775 Msa0582270:CDS 35.0%
!!! TGCTGCTAGTTTTGTATTGA+AGG - chr4_2:587860-587879 Msa0582270:CDS 35.0%
!!! GCTGCTAGTTTTGTATTGAA+GGG - chr4_2:587861-587880 Msa0582270:CDS 35.0%
CGTACTTTGCTTATTTGCTT+TGG + chr4_2:587896-587915 None:intergenic 35.0%
ATCGTTGCTTATGATAAGGC+AGG - chr4_2:585683-585702 Msa0582270:three_prime_UTR 40.0%
!! TATCGCATTTTAATGGCGGA+GGG + chr4_2:585721-585740 None:intergenic 40.0%
! AGGGTTTGACACGTGTTATT+TGG + chr4_2:585767-585786 None:intergenic 40.0%
! GTTCTGGCTGAGAAAATGAA+AGG + chr4_2:585787-585806 None:intergenic 40.0%
! AGGAGGTTGTTGAGTTGTTT+GGG + chr4_2:585827-585846 None:intergenic 40.0%
TGAAGTGAGGTTGAAGTTGA+AGG + chr4_2:585891-585910 None:intergenic 40.0%
!!! GAAGTGTGGTTTTTGAAGTG+AGG + chr4_2:585904-585923 None:intergenic 40.0%
!!! TAGTACTGGTTTTTAAGGCG+TGG + chr4_2:585977-585996 None:intergenic 40.0%
TAAGCTCTCTGAGTAATAGC+AGG + chr4_2:586172-586191 None:intergenic 40.0%
GCATCAAGAAAGCTGTATTC+CGG + chr4_2:586342-586361 None:intergenic 40.0%
AATACAGCTTTCTTGATGCC+CGG - chr4_2:586343-586362 Msa0582270:CDS 40.0%
TACATGAGATTCTCGTTAGG+AGG + chr4_2:586555-586574 None:intergenic 40.0%
ATCTCATGTATTACTCGTCC+TGG - chr4_2:586565-586584 Msa0582270:intron 40.0%
CGTCCTGGTTACTATTAAGA+AGG - chr4_2:586580-586599 Msa0582270:intron 40.0%
GTGCAGATATATGCATCAGA+TGG - chr4_2:586971-586990 Msa0582270:intron 40.0%
! TTTGGAGTTCCGTCATCAAT+GGG + chr4_2:587022-587041 None:intergenic 40.0%
! ATTTGGAGTTCCGTCATCAA+TGG + chr4_2:587023-587042 None:intergenic 40.0%
ACATCTGCAACACTCTCATT+TGG + chr4_2:587040-587059 None:intergenic 40.0%
ATCCTTGAAACTCAATACGC+TGG - chr4_2:587088-587107 Msa0582270:intron 40.0%
! GGATAACTTGTCAATCCTTC+AGG - chr4_2:587141-587160 Msa0582270:intron 40.0%
TTAGTTACCTTCGCAAGTCT+AGG + chr4_2:587180-587199 None:intergenic 40.0%
! GGTTGGAGTATCTAGTTAGT+TGG + chr4_2:587203-587222 None:intergenic 40.0%
! ATAATTGCAGAGGCTTTGGT+TGG + chr4_2:587230-587249 None:intergenic 40.0%
TGTCTCAAATTTCAGGCACA+GGG - chr4_2:587365-587384 Msa0582270:intron 40.0%
GAATGTCATTGGTATCAACC+TGG + chr4_2:587419-587438 None:intergenic 40.0%
AATGCATGGAATAGAGGTGA+CGG - chr4_2:587718-587737 Msa0582270:CDS 40.0%
!! AGGTGACGGAAATGATATTG+AGG - chr4_2:587732-587751 Msa0582270:CDS 40.0%
! TAGCAGCGATTTTCTGTTGT+TGG - chr4_2:587824-587843 Msa0582270:CDS 40.0%
AAAAACACACCCATTACCGA+TGG + chr4_2:587989-588008 None:intergenic 40.0%
!! CTATCGCATTTTAATGGCGG+AGG + chr4_2:585722-585741 None:intergenic 45.0%
AGTTGTTTGGGAGGAAGACA+TGG + chr4_2:585815-585834 None:intergenic 45.0%
! AGGTTGTTGAGTTGTTTGGG+AGG + chr4_2:585824-585843 None:intergenic 45.0%
! GAGGAGGTTGTTGAGTTGTT+TGG + chr4_2:585828-585847 None:intergenic 45.0%
GTTGAAGGAGATGGTGAATG+CGG + chr4_2:585876-585895 None:intergenic 45.0%
GAGGTTGAAGTTGAAGGAGA+TGG + chr4_2:585885-585904 None:intergenic 45.0%
! ATGGCTACTGGGTCTGAAAT+GGG + chr4_2:585926-585945 None:intergenic 45.0%
AATGGCTACTGGGTCTGAAA+TGG + chr4_2:585927-585946 None:intergenic 45.0%
!!! TACTGGTTTTTAAGGCGTGG+TGG + chr4_2:585974-585993 None:intergenic 45.0%
CAGACCTCACAAGATAGTAC+TGG + chr4_2:585991-586010 None:intergenic 45.0%
CAGTACTATCTTGTGAGGTC+TGG - chr4_2:585989-586008 Msa0582270:three_prime_UTR 45.0%
AGTGATAAACACCAACCCTG+TGG - chr4_2:586036-586055 Msa0582270:three_prime_UTR 45.0%
GCGAAAACCTCTGTGGATAA+TGG - chr4_2:586058-586077 Msa0582270:three_prime_UTR 45.0%
ATACAGCTTTCTTGATGCCC+GGG - chr4_2:586344-586363 Msa0582270:CDS 45.0%
TTCATAAGCACCTAATCCCC+GGG + chr4_2:586364-586383 None:intergenic 45.0%
CTTCATAAGCACCTAATCCC+CGG + chr4_2:586365-586384 None:intergenic 45.0%
AAACCTCCTCCCATTGATGA+CGG - chr4_2:587010-587029 Msa0582270:intron 45.0%
CACCAGCGTATTGAGTTTCA+AGG + chr4_2:587093-587112 None:intergenic 45.0%
CGTTATAGTCTCGCCAGATT+CGG - chr4_2:587120-587139 Msa0582270:intron 45.0%
AACTTGTCAATCCTTCAGGC+TGG - chr4_2:587145-587164 Msa0582270:intron 45.0%
GTGTCTCAAATTTCAGGCAC+AGG - chr4_2:587364-587383 Msa0582270:intron 45.0%
!! GATGGAGGCATCTTGTAAGT+AGG + chr4_2:587441-587460 None:intergenic 45.0%
!! TTTGATGACCAGAAGCGTTG+TGG - chr4_2:587917-587936 Msa0582270:CDS 45.0%
!! TTGATGACCAGAAGCGTTGT+GGG - chr4_2:587918-587937 Msa0582270:CDS 45.0%
!! AGTTTGGTGTGTGTGTGTAG+TGG - chr4_2:587959-587978 Msa0582270:CDS 45.0%
TGTGTGTAGTGGTAGTCCAT+CGG - chr4_2:587970-587989 Msa0582270:CDS 45.0%
TAGTGGTAGTCCATCGGTAA+TGG - chr4_2:587976-587995 Msa0582270:CDS 45.0%
AGTGGTAGTCCATCGGTAAT+GGG - chr4_2:587977-587996 Msa0582270:CDS 45.0%
!!! TTTTTCATTTTTTATTTTTA+AGG - chr4_2:585654-585673 Msa0582270:three_prime_UTR 5.0%
!! CATTTTAATGGCGGAGGGAG+AGG + chr4_2:585716-585735 None:intergenic 50.0%
GGAAGACATGGTGGTTGTTC+TGG + chr4_2:585803-585822 None:intergenic 50.0%
TGTTTGGGAGGAAGACATGG+TGG + chr4_2:585812-585831 None:intergenic 50.0%
TGAATGCGGTTGTGGTGAGA+AGG + chr4_2:585862-585881 None:intergenic 50.0%
! TGGGTCTGAAATGGGAAGTG+TGG + chr4_2:585918-585937 None:intergenic 50.0%
GATGAAGAGTCCACTGGCAA+TGG + chr4_2:585945-585964 None:intergenic 50.0%
AGGCATGATGAAGAGTCCAC+TGG + chr4_2:585951-585970 None:intergenic 50.0%
!!! TGGTTTTTAAGGCGTGGTGG+AGG + chr4_2:585971-585990 None:intergenic 50.0%
TACAGCTTTCTTGATGCCCG+GGG - chr4_2:586345-586364 Msa0582270:CDS 50.0%
TTTCTTGATGCCCGGGGATT+AGG - chr4_2:586351-586370 Msa0582270:CDS 50.0%
CGGGGATTAGGTGCTTATGA+AGG - chr4_2:586363-586382 Msa0582270:CDS 50.0%
! GTCAATCCTTCAGGCTGGTT+TGG - chr4_2:587150-587169 Msa0582270:intron 50.0%
!! ATCCTTCAGGCTGGTTTGGT+AGG - chr4_2:587154-587173 Msa0582270:intron 50.0%
! AGGCTTTGGTTGGTTGAGGT+TGG + chr4_2:587220-587239 None:intergenic 50.0%
! AGGGAGTTGTCTTTTGCACC+TGG - chr4_2:587384-587403 Msa0582270:intron 50.0%
!! TGATGACCAGAAGCGTTGTG+GGG - chr4_2:587919-587938 Msa0582270:CDS 50.0%
TTGTGGTGAGAAGGTGGCGA+CGG + chr4_2:585853-585872 None:intergenic 55.0%
ATGCGGTTGTGGTGAGAAGG+TGG + chr4_2:585859-585878 None:intergenic 55.0%
GGAGATGGTGAATGCGGTTG+TGG + chr4_2:585870-585889 None:intergenic 55.0%
GTCCACTGGCAATGGCTACT+GGG + chr4_2:585937-585956 None:intergenic 55.0%
AGTCCACTGGCAATGGCTAC+TGG + chr4_2:585938-585957 None:intergenic 55.0%
! AGAGGTTTTCGCCACAGGGT+TGG + chr4_2:586050-586069 None:intergenic 55.0%
! CCACAGAGGTTTTCGCCACA+GGG + chr4_2:586054-586073 None:intergenic 55.0%
! TCCACAGAGGTTTTCGCCAC+AGG + chr4_2:586055-586074 None:intergenic 55.0%
GTTCCGTCATCAATGGGAGG+AGG + chr4_2:587016-587035 None:intergenic 55.0%
GGAGTTCCGTCATCAATGGG+AGG + chr4_2:587019-587038 None:intergenic 55.0%
TGGTAGGCCTAGACTTGCGA+AGG - chr4_2:587170-587189 Msa0582270:intron 55.0%
! GCAGAGGCTTTGGTTGGTTG+AGG + chr4_2:587224-587243 None:intergenic 55.0%
TCAACCTGGCGAACTTCACC+AGG + chr4_2:587405-587424 None:intergenic 55.0%
!! GATGACCAGAAGCGTTGTGG+GGG - chr4_2:587920-587939 Msa0582270:CDS 55.0%
AATCTCCCCCACAACGCTTC+TGG + chr4_2:587928-587947 None:intergenic 55.0%
GACCCAGTAGCCATTGCCAG+TGG - chr4_2:585932-585951 Msa0582270:three_prime_UTR 60.0%
CCCTGTGGCGAAAACCTCTG+TGG - chr4_2:586051-586070 Msa0582270:three_prime_UTR 60.0%
GGCCTACCAAACCAGCCTGA+AGG + chr4_2:587159-587178 None:intergenic 60.0%
TGCACCTGGTGAAGTTCGCC+AGG - chr4_2:587398-587417 Msa0582270:intron 60.0%
TGAGAAGGTGGCGACGGTGG+AGG + chr4_2:585847-585866 None:intergenic 65.0%
TGGTGAGAAGGTGGCGACGG+TGG + chr4_2:585850-585869 None:intergenic 65.0%
GAAGGTGGCGACGGTGGAGG+AGG + chr4_2:585844-585863 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 585653 588159 585653 ID=Msa0582270;Name=Msa0582270
chr4_2 mRNA 585653 588159 585653 ID=Msa0582270-mRNA-1;Parent=Msa0582270;Name=Msa0582270-mRNA-1;_AED=0.02;_eAED=0.02;_QI=99|1|1|1|1|1|4|659|300
chr4_2 exon 585653 586432 585653 ID=Msa0582270-mRNA-1:exon:107;Parent=Msa0582270-mRNA-1
chr4_2 exon 586621 586835 586621 ID=Msa0582270-mRNA-1:exon:106;Parent=Msa0582270-mRNA-1
chr4_2 exon 587402 587483 587402 ID=Msa0582270-mRNA-1:exon:105;Parent=Msa0582270-mRNA-1
chr4_2 exon 587576 588159 587576 ID=Msa0582270-mRNA-1:exon:104;Parent=Msa0582270-mRNA-1
chr4_2 five_prime_UTR 588061 588159 588061 ID=Msa0582270-mRNA-1:five_prime_utr;Parent=Msa0582270-mRNA-1
chr4_2 CDS 587576 588060 587576 ID=Msa0582270-mRNA-1:cds;Parent=Msa0582270-mRNA-1
chr4_2 CDS 587402 587483 587402 ID=Msa0582270-mRNA-1:cds;Parent=Msa0582270-mRNA-1
chr4_2 CDS 586621 586835 586621 ID=Msa0582270-mRNA-1:cds;Parent=Msa0582270-mRNA-1
chr4_2 CDS 586312 586432 586312 ID=Msa0582270-mRNA-1:cds;Parent=Msa0582270-mRNA-1
chr4_2 three_prime_UTR 585653 586311 585653 ID=Msa0582270-mRNA-1:three_prime_utr;Parent=Msa0582270-mRNA-1
Gene Sequence

>Msa0582270

ATGCTATTAGCACCAAATAACACGTGTCAAACCCTTTCATTTTCTCAGCCAGAACAACCACCATGTCTTCCTCCCAAACAACTCAACAACCTCCTCCACCGTCGCCACCTTCTCACCACAACCGCATTCACCATCTCCTTCAACTTCAACCTCACTTCAAAAACCACACTTCCCATTTCAGACCCAGTAGCCATTGCCAGTGGACTCTTCATCATGCCTCCACCACGCCTTAAAAACCAGTACTATCTTGTGAGGTCTGGAGAATCAGAGTTTGAGAGTATGGGAGTGATAAACACCAACCCTGTGGCGAAAACCTCTGTGGATAATGGTTTATCTGATAGAGGGAAGAAACAGAGTATCAGAGCTGCTTTTGATTTGAAAGAAATGGGTGCTTGTGATAATAATTGTTGGATTTGGCCTGCTATTACTCAGAGAGCTTATCAAACTGCTGAGATTATTGCTTCTGTTAATTCTATTACTAGAAGTTATATTGTTCCGGAATACAGCTTTCTTGATGCCCGGGGATTAGGTGCTTATGAAGGAAAAACATTAGAATATGTTTCAGAAATATATGCATCAGATGGTATATCTACAAAAATAAAACCTCCTCCCATTGATGACGGAACTCCAAATGAGAGTGTTGCAGATGTTTTTGTTCGTGTGACCCAACTCATGTCAATCCTTGAAACTCAATACGCTGGTGACACAGTCGTTATAGTCTCGCCAGATTCGGATAACTTGTCAATCCTTCAGGCTGGTTTGGTAGGCCTAGACTTGCGAAGGCACAGGGAGTTGTCTTTTGCACCTGGTGAAGTTCGCCAGGTTGATACCAATGACATTCCTACTTACAAGATGCCTCCATCTGCTGTATATAAATGCTCCAAGCTACCAAATTGTAATTAG

Protein sequence

>Msa0582270

MLLAPNNTCQTLSFSQPEQPPCLPPKQLNNLLHRRHLLTTTAFTISFNFNLTSKTTLPISDPVAIASGLFIMPPPRLKNQYYLVRSGESEFESMGVINTNPVAKTSVDNGLSDRGKKQSIRAAFDLKEMGACDNNCWIWPAITQRAYQTAEIIASVNSITRSYIVPEYSFLDARGLGAYEGKTLEYVSEIYASDGISTKIKPPPIDDGTPNESVADVFVRVTQLMSILETQYAGDTVVIVSPDSDNLSILQAGLVGLDLRRHRELSFAPGEVRQVDTNDIPTYKMPPSAVYKCSKLPNCN*