Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164910 | XP_013466817.1 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 736 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164910 | sp|P93324|CHOMT_MEDSA | 51.351 | 370 | 172 | 6 | 5 | 370 | 7 | 372 | 2.10e-131 | 384 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164910 | A0A072VHJ4 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 736 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0164910 | 0.833103 | 6.461210e-56 | -8.615850e-47 |
| Msa0047460 | Msa0164910 | 0.805215 | 1.486782e-49 | -8.615850e-47 |
| Msa0049750 | Msa0164910 | 0.830674 | 2.570712e-55 | -8.615850e-47 |
| Msa0062970 | Msa0164910 | 0.878773 | 2.140588e-69 | -8.615850e-47 |
| Msa0065950 | Msa0164910 | 0.821555 | 3.794892e-53 | -8.615850e-47 |
| Msa0107400 | Msa0164910 | 0.969357 | 5.281886e-130 | -8.615850e-47 |
| Msa0153830 | Msa0164910 | 0.813098 | 3.039903e-51 | -8.615850e-47 |
| Msa0153980 | Msa0164910 | 0.980675 | 9.038878e-151 | -8.615850e-47 |
| Msa0164910 | Msa0190250 | 0.807674 | 4.505029e-50 | -8.615850e-47 |
| Msa0164910 | Msa0243480 | 0.806360 | 8.545230e-50 | -8.615850e-47 |
| Msa0164910 | Msa0301170 | 0.844951 | 5.500142e-59 | -8.615850e-47 |
| Msa0164910 | Msa0320430 | 0.820287 | 7.427332e-53 | -8.615850e-47 |
| Msa0164910 | Msa0321080 | 0.825991 | 3.465457e-54 | -8.615850e-47 |
| Msa0164910 | Msa0329700 | 0.818452 | 1.945891e-52 | -8.615850e-47 |
| Msa0164910 | Msa0331020 | 0.814303 | 1.649901e-51 | -8.615850e-47 |
| Msa0164910 | Msa0545050 | 0.800346 | 1.504651e-48 | -8.615850e-47 |
| Msa0164910 | Msa0600590 | 0.800513 | 1.391639e-48 | -8.615850e-47 |
| Msa0164910 | Msa0653490 | 0.801176 | 1.018698e-48 | -8.615850e-47 |
| Msa0164910 | Msa0741400 | 0.818404 | 1.995289e-52 | -8.615850e-47 |
| Msa0164910 | Msa0771580 | 0.813208 | 2.874863e-51 | -8.615850e-47 |
| Msa0164910 | Msa0812950 | 0.813457 | 2.535702e-51 | -8.615850e-47 |
| Msa0164910 | Msa0871430 | 0.810569 | 1.079861e-50 | -8.615850e-47 |
| Msa0164910 | Msa0934840 | 0.800636 | 1.313215e-48 | -8.615850e-47 |
| Msa0164910 | Msa1006730 | 0.811336 | 7.368475e-51 | -8.615850e-47 |
| Msa0164910 | Msa1008390 | 0.810204 | 1.294608e-50 | -8.615850e-47 |
| Msa0164910 | Msa1008400 | 0.808699 | 2.724293e-50 | -8.615850e-47 |
| Msa0164910 | Msa1008450 | 0.842198 | 2.993361e-58 | -8.615850e-47 |
| Msa0164910 | Msa1013070 | 0.854527 | 1.160007e-61 | -8.615850e-47 |
| Msa0164910 | Msa1023300 | 0.806204 | 9.214940e-50 | -8.615850e-47 |
| Msa0164910 | Msa1094280 | 0.837144 | 6.181343e-57 | -8.615850e-47 |
| Msa0164910 | Msa1098900 | 0.815571 | 8.637394e-52 | -8.615850e-47 |
| Msa0164910 | Msa1098940 | 0.815087 | 1.106138e-51 | -8.615850e-47 |
| Msa0164910 | Msa1107260 | 0.813989 | 1.935986e-51 | -8.615850e-47 |
| Msa0164910 | Msa1129550 | 0.809609 | 1.738351e-50 | -8.615850e-47 |
| Msa0164910 | Msa1129730 | 0.810607 | 1.059834e-50 | -8.615850e-47 |
| Msa0164910 | Msa1131230 | 0.802320 | 5.932077e-49 | -8.615850e-47 |
| Msa0164910 | Msa1203480 | 0.805947 | 1.043685e-49 | -8.615850e-47 |
| Msa0164910 | Msa1208380 | 0.811362 | 7.272513e-51 | -8.615850e-47 |
| Msa0164910 | Msa1239620 | 0.818012 | 2.447131e-52 | -8.615850e-47 |
| Msa0164910 | Msa1267480 | 0.809058 | 2.283025e-50 | -8.615850e-47 |
| Msa0164910 | Msa1267510 | 0.808827 | 2.557223e-50 | -8.615850e-47 |
| Msa0164910 | Msa1305180 | 0.810826 | 9.504682e-51 | -8.615850e-47 |
| Msa0164910 | Msa1305330 | 0.810563 | 1.083268e-50 | -8.615850e-47 |
| Msa0164910 | Msa1348850 | 0.823083 | 1.676748e-53 | -8.615850e-47 |
| Msa0164910 | Msa1432810 | 0.826869 | 2.140587e-54 | -8.615850e-47 |
| Msa0164910 | Msa1438840 | 0.809372 | 1.954605e-50 | -8.615850e-47 |
| Msa0164910 | Msa1449750 | 0.800398 | 1.468697e-48 | -8.615850e-47 |
| Msa0164910 | Msa1460800 | 0.802123 | 6.513764e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164910 | MtrunA17_Chr1g0163611 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 736 |
| Msa0164910 | MtrunA17_Chr1g0163601 | 90.541 | 370 | 35 | 0 | 1 | 370 | 1 | 370 | 0.0 | 713 |
| Msa0164910 | MtrunA17_Chr1g0163621 | 81.892 | 370 | 66 | 1 | 1 | 370 | 16 | 384 | 0.0 | 614 |
| Msa0164910 | MtrunA17_Chr7g0218131 | 51.482 | 371 | 172 | 6 | 3 | 370 | 5 | 370 | 1.86e-134 | 388 |
| Msa0164910 | MtrunA17_Chr1g0200491 | 50.811 | 370 | 174 | 6 | 5 | 370 | 7 | 372 | 6.95e-132 | 382 |
| Msa0164910 | MtrunA17_Chr7g0218261 | 50.541 | 370 | 176 | 5 | 3 | 370 | 4 | 368 | 2.82e-131 | 380 |
| Msa0164910 | MtrunA17_Chr2g0307521 | 51.714 | 350 | 161 | 5 | 23 | 370 | 20 | 363 | 2.76e-128 | 372 |
| Msa0164910 | MtrunA17_Chr7g0218181 | 49.734 | 376 | 174 | 7 | 1 | 370 | 1 | 367 | 1.13e-127 | 371 |
| Msa0164910 | MtrunA17_Chr7g0218211 | 48.518 | 371 | 183 | 6 | 3 | 370 | 4 | 369 | 7.08e-127 | 369 |
| Msa0164910 | MtrunA17_Chr7g0218271 | 49.062 | 373 | 183 | 6 | 3 | 370 | 5 | 375 | 4.05e-125 | 365 |
| Msa0164910 | MtrunA17_Chr7g0218301 | 48.925 | 372 | 183 | 6 | 4 | 370 | 6 | 375 | 3.57e-123 | 360 |
| Msa0164910 | MtrunA17_Chr3g0085211 | 50.696 | 359 | 169 | 6 | 14 | 370 | 18 | 370 | 2.08e-122 | 358 |
| Msa0164910 | MtrunA17_Chr3g0085201 | 48.619 | 362 | 176 | 7 | 12 | 370 | 3 | 357 | 3.31e-114 | 336 |
| Msa0164910 | MtrunA17_Chr3g0128011 | 41.667 | 372 | 206 | 6 | 1 | 370 | 55 | 417 | 1.84e-103 | 311 |
| Msa0164910 | MtrunA17_Chr7g0276401 | 44.474 | 371 | 195 | 8 | 3 | 370 | 13 | 375 | 3.89e-99 | 298 |
| Msa0164910 | MtrunA17_Chr5g0448091 | 40.055 | 362 | 205 | 7 | 14 | 370 | 9 | 363 | 5.25e-91 | 277 |
| Msa0164910 | MtrunA17_Chr8g0367441 | 41.292 | 356 | 198 | 6 | 19 | 370 | 29 | 377 | 9.32e-91 | 277 |
| Msa0164910 | MtrunA17_Chr8g0367451 | 40.730 | 356 | 200 | 6 | 19 | 370 | 28 | 376 | 1.01e-88 | 272 |
| Msa0164910 | MtrunA17_Chr7g0276411 | 40.054 | 367 | 208 | 7 | 9 | 370 | 3 | 362 | 1.18e-88 | 271 |
| Msa0164910 | MtrunA17_Chr8g0367491 | 39.216 | 357 | 200 | 7 | 21 | 370 | 30 | 376 | 9.90e-88 | 269 |
| Msa0164910 | MtrunA17_Chr8g0367501 | 38.211 | 369 | 216 | 7 | 8 | 370 | 3 | 365 | 2.19e-85 | 265 |
| Msa0164910 | MtrunA17_Chr8g0367381 | 38.941 | 321 | 170 | 5 | 19 | 336 | 29 | 326 | 7.18e-76 | 237 |
| Msa0164910 | MtrunA17_Chr8g0345851 | 43.662 | 284 | 148 | 6 | 93 | 370 | 13 | 290 | 1.29e-75 | 235 |
| Msa0164910 | MtrunA17_Chr1g0170931 | 91.803 | 122 | 10 | 0 | 22 | 143 | 5 | 126 | 1.74e-74 | 226 |
| Msa0164910 | MtrunA17_Chr2g0314271 | 36.667 | 360 | 211 | 9 | 16 | 370 | 7 | 354 | 1.87e-62 | 204 |
| Msa0164910 | MtrunA17_Chr3g0130011 | 35.180 | 361 | 218 | 9 | 15 | 370 | 9 | 358 | 1.39e-60 | 199 |
| Msa0164910 | MtrunA17_Chr3g0130061 | 35.912 | 362 | 214 | 11 | 15 | 370 | 9 | 358 | 5.34e-58 | 192 |
| Msa0164910 | MtrunA17_Chr4g0022021 | 33.626 | 342 | 199 | 13 | 38 | 369 | 44 | 367 | 9.20e-51 | 174 |
| Msa0164910 | MtrunA17_Chr4g0021981 | 33.628 | 339 | 203 | 12 | 38 | 369 | 44 | 367 | 3.78e-49 | 169 |
| Msa0164910 | MtrunA17_Chr6g0482291 | 43.011 | 186 | 95 | 3 | 186 | 370 | 1 | 176 | 1.21e-48 | 162 |
| Msa0164910 | MtrunA17_Chr3g0121301 | 39.691 | 194 | 113 | 3 | 160 | 349 | 149 | 342 | 3.00e-46 | 161 |
| Msa0164910 | MtrunA17_Chr1g0188391 | 30.523 | 344 | 183 | 8 | 38 | 354 | 33 | 347 | 7.86e-43 | 152 |
| Msa0164910 | MtrunA17_Chr5g0432251 | 28.150 | 373 | 240 | 11 | 10 | 369 | 1 | 358 | 1.05e-41 | 149 |
| Msa0164910 | MtrunA17_Chr4g0040621 | 30.792 | 341 | 217 | 6 | 23 | 355 | 27 | 356 | 4.20e-41 | 148 |
| Msa0164910 | MtrunA17_Chr7g0219161 | 31.488 | 289 | 189 | 4 | 70 | 355 | 62 | 344 | 5.73e-41 | 147 |
| Msa0164910 | MtrunA17_Chr4g0046361 | 30.994 | 342 | 212 | 9 | 38 | 369 | 33 | 360 | 5.97e-41 | 147 |
| Msa0164910 | MtrunA17_Chr5g0432301 | 29.155 | 367 | 238 | 10 | 13 | 369 | 5 | 359 | 2.87e-40 | 145 |
| Msa0164910 | MtrunA17_Chr5g0432241 | 29.491 | 373 | 231 | 11 | 14 | 369 | 2 | 359 | 8.47e-40 | 144 |
| Msa0164910 | MtrunA17_Chr7g0223231 | 27.920 | 351 | 211 | 6 | 18 | 354 | 14 | 336 | 1.40e-39 | 144 |
| Msa0164910 | MtrunA17_Chr4g0014561 | 30.836 | 347 | 224 | 8 | 30 | 369 | 25 | 362 | 1.44e-39 | 144 |
| Msa0164910 | MtrunA17_Chr4g0046531 | 30.887 | 327 | 205 | 6 | 35 | 354 | 30 | 342 | 4.01e-39 | 147 |
| Msa0164910 | MtrunA17_Chr4g0046531 | 30.211 | 331 | 216 | 6 | 28 | 354 | 385 | 704 | 7.97e-38 | 144 |
| Msa0164910 | MtrunA17_Chr7g0219141 | 29.464 | 336 | 221 | 8 | 38 | 369 | 33 | 356 | 4.90e-39 | 142 |
| Msa0164910 | MtrunA17_Chr1g0170941 | 81.579 | 76 | 14 | 0 | 194 | 269 | 1 | 76 | 6.40e-39 | 133 |
| Msa0164910 | MtrunA17_Chr7g0223241 | 29.204 | 339 | 200 | 6 | 30 | 354 | 24 | 336 | 3.04e-38 | 140 |
| Msa0164910 | MtrunA17_Chr4g0014681 | 30.259 | 347 | 226 | 8 | 30 | 369 | 25 | 362 | 3.54e-38 | 140 |
| Msa0164910 | MtrunA17_Chr4g0014641 | 30.678 | 339 | 219 | 9 | 38 | 369 | 33 | 362 | 4.63e-38 | 140 |
| Msa0164910 | MtrunA17_Chr5g0432211 | 36.967 | 211 | 128 | 3 | 150 | 355 | 122 | 332 | 1.52e-37 | 138 |
| Msa0164910 | MtrunA17_Chr5g0432261 | 35.874 | 223 | 127 | 4 | 150 | 369 | 117 | 326 | 2.14e-37 | 137 |
| Msa0164910 | MtrunA17_Chr1g0188371 | 28.267 | 329 | 213 | 8 | 30 | 348 | 25 | 340 | 1.88e-36 | 136 |
| Msa0164910 | MtrunA17_Chr4g0046341 | 35.833 | 240 | 145 | 5 | 136 | 369 | 127 | 363 | 1.89e-35 | 133 |
| Msa0164910 | MtrunA17_Chr8g0367401 | 50.000 | 110 | 55 | 0 | 163 | 272 | 2 | 111 | 2.36e-35 | 126 |
| Msa0164910 | MtrunA17_Chr1g0170951 | 76.712 | 73 | 17 | 0 | 280 | 352 | 17 | 89 | 4.01e-35 | 124 |
| Msa0164910 | MtrunA17_Chr4g0014661 | 29.191 | 346 | 225 | 8 | 30 | 369 | 25 | 356 | 5.64e-29 | 115 |
| Msa0164910 | MtrunA17_Chr4g0014591 | 29.588 | 267 | 173 | 6 | 29 | 292 | 24 | 278 | 2.56e-25 | 105 |
| Msa0164910 | MtrunA17_Chr8g0367461 | 42.105 | 114 | 63 | 2 | 258 | 370 | 1 | 112 | 5.15e-24 | 95.5 |
| Msa0164910 | MtrunA17_Chr7g0219171 | 37.313 | 134 | 78 | 3 | 239 | 369 | 117 | 247 | 3.87e-23 | 97.1 |
| Msa0164910 | MtrunA17_Chr8g0367421 | 42.727 | 110 | 46 | 1 | 163 | 272 | 2 | 94 | 3.89e-23 | 93.6 |
| Msa0164910 | MtrunA17_Chr4g0014601 | 29.032 | 248 | 160 | 7 | 30 | 274 | 25 | 259 | 7.97e-20 | 88.2 |
| Msa0164910 | MtrunA17_Chr8g0367391 | 43.564 | 101 | 54 | 2 | 271 | 370 | 36 | 134 | 6.22e-18 | 79.3 |
| Msa0164910 | MtrunA17_Chr8g0367411 | 32.540 | 126 | 80 | 2 | 14 | 137 | 3 | 125 | 7.38e-17 | 76.6 |
| Msa0164910 | MtrunA17_Chr8g0367481 | 35.294 | 119 | 72 | 2 | 19 | 135 | 29 | 144 | 4.62e-16 | 74.7 |
| Msa0164910 | MtrunA17_Chr8g0367471 | 48.333 | 60 | 31 | 0 | 194 | 253 | 9 | 68 | 2.98e-15 | 70.9 |
| Msa0164910 | MtrunA17_Chr6g0476581 | 46.154 | 91 | 41 | 2 | 3 | 90 | 5 | 90 | 9.11e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0164910 | AT5G54160.1 | 45.000 | 340 | 178 | 4 | 19 | 356 | 17 | 349 | 1.01e-102 | 308 |
| Msa0164910 | AT1G77520.1 | 40.052 | 387 | 206 | 12 | 3 | 370 | 2 | 381 | 2.25e-87 | 269 |
| Msa0164910 | AT1G51990.2 | 39.466 | 337 | 192 | 6 | 19 | 349 | 13 | 343 | 9.06e-81 | 251 |
| Msa0164910 | AT1G51990.1 | 39.466 | 337 | 192 | 6 | 19 | 349 | 13 | 343 | 1.47e-80 | 251 |
| Msa0164910 | AT1G33030.1 | 38.352 | 352 | 200 | 9 | 25 | 370 | 10 | 350 | 7.33e-76 | 238 |
| Msa0164910 | AT1G63140.4 | 39.344 | 366 | 197 | 11 | 19 | 370 | 47 | 401 | 8.18e-74 | 234 |
| Msa0164910 | AT1G63140.2 | 39.344 | 366 | 197 | 11 | 19 | 370 | 27 | 381 | 1.07e-73 | 234 |
| Msa0164910 | AT1G77530.1 | 39.892 | 371 | 204 | 9 | 12 | 370 | 18 | 381 | 3.87e-72 | 230 |
| Msa0164910 | AT1G21130.1 | 38.889 | 378 | 210 | 12 | 1 | 370 | 9 | 373 | 1.07e-66 | 215 |
| Msa0164910 | AT1G21100.1 | 39.326 | 356 | 199 | 11 | 23 | 370 | 27 | 373 | 1.97e-65 | 212 |
| Msa0164910 | AT1G21110.1 | 39.326 | 356 | 199 | 11 | 23 | 370 | 27 | 373 | 9.93e-65 | 210 |
| Msa0164910 | AT1G76790.1 | 41.210 | 347 | 183 | 12 | 23 | 357 | 17 | 354 | 1.16e-64 | 210 |
| Msa0164910 | AT1G21120.1 | 39.045 | 356 | 200 | 11 | 23 | 370 | 27 | 373 | 3.28e-63 | 206 |
| Msa0164910 | AT1G21120.2 | 39.045 | 356 | 200 | 11 | 23 | 370 | 75 | 421 | 2.47e-62 | 206 |
| Msa0164910 | AT5G53810.1 | 37.176 | 347 | 200 | 10 | 35 | 370 | 39 | 378 | 2.28e-61 | 202 |
| Msa0164910 | AT3G53140.1 | 36.286 | 350 | 199 | 11 | 16 | 353 | 7 | 344 | 5.79e-60 | 197 |
| Msa0164910 | AT5G37170.1 | 34.417 | 369 | 182 | 12 | 11 | 370 | 17 | 334 | 1.33e-56 | 188 |
| Msa0164910 | AT5G37170.2 | 43.500 | 200 | 108 | 4 | 174 | 370 | 37 | 234 | 2.35e-52 | 174 |
| Msa0164910 | AT1G62900.1 | 42.157 | 204 | 114 | 3 | 169 | 370 | 4 | 205 | 1.04e-51 | 171 |
| Msa0164910 | AT1G33030.3 | 37.647 | 255 | 145 | 7 | 25 | 274 | 10 | 255 | 1.08e-48 | 166 |
| Msa0164910 | AT5G37170.3 | 43.085 | 188 | 102 | 4 | 186 | 370 | 1 | 186 | 5.35e-48 | 161 |
| Msa0164910 | AT1G63140.1 | 39.474 | 266 | 140 | 8 | 19 | 272 | 47 | 303 | 7.99e-48 | 164 |
| Msa0164910 | AT1G33030.2 | 37.549 | 253 | 144 | 7 | 25 | 272 | 10 | 253 | 1.12e-47 | 162 |
| Msa0164910 | AT4G35150.1 | 35.096 | 208 | 125 | 4 | 157 | 354 | 103 | 310 | 6.84e-42 | 149 |
| Msa0164910 | AT1G21130.2 | 38.489 | 278 | 154 | 9 | 1 | 272 | 9 | 275 | 1.46e-40 | 145 |
| Msa0164910 | AT4G35160.1 | 36.585 | 205 | 120 | 4 | 160 | 354 | 163 | 367 | 6.05e-37 | 137 |
| Msa0164910 | AT1G63140.3 | 37.705 | 244 | 131 | 8 | 19 | 250 | 47 | 281 | 8.44e-36 | 132 |
| Msa0164910 | AT1G77530.2 | 38.554 | 249 | 138 | 7 | 12 | 250 | 18 | 261 | 1.29e-35 | 131 |
Find 63 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.171873 | 1_4:+44845422 | Msa0164910:CDS |
| ACTGCAAGCCATATGAAATT+TGG | 0.231520 | 1_4:-44846014 | None:intergenic |
| ACAATCACTTTCCCATGTTT+TGG | 0.276979 | 1_4:-44845845 | None:intergenic |
| CTGGACCATTAGAAATTAAA+AGG | 0.282224 | 1_4:+44845313 | Msa0164910:CDS |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1_4:+44842470 | Msa0164910:CDS |
| TGGACCAACCTTTAGTAAAA+TGG | 0.289172 | 1_4:-44845664 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.291900 | 1_4:-44842330 | None:intergenic |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_4:-44842318 | None:intergenic |
| ACATGGGAAAGTGATTGTTT+TGG | 0.324846 | 1_4:+44845850 | Msa0164910:CDS |
| TTCTTTCTTACCATCTTCAT+TGG | 0.332460 | 1_4:-44842406 | None:intergenic |
| AGGATCCTCAAGTTATATAA+AGG | 0.334038 | 1_4:+44845333 | Msa0164910:CDS |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1_4:+44842471 | Msa0164910:CDS |
| AAGTTACACCTTTCAAAGTT+TGG | 0.344197 | 1_4:-44846174 | None:intergenic |
| AACCAAGCAATGGGCCAATC+TGG | 0.360100 | 1_4:+44845294 | Msa0164910:CDS |
| ATTCAATTCTTTATTTGTCT+TGG | 0.365557 | 1_4:-44845262 | None:intergenic |
| TTGCTAGGGTTTGGCACCTC+TGG | 0.367599 | 1_4:-44845884 | None:intergenic |
| TGATGCAAAGGATGCAATAT+TGG | 0.368078 | 1_4:+44845182 | Msa0164910:CDS |
| ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1_4:-44842207 | None:intergenic |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_4:+44842317 | Msa0164910:CDS |
| TGCAGCTTGTATGTCATAAC+TGG | 0.386144 | 1_4:+44845774 | Msa0164910:intron |
| AAACACTGTTACATCCTCTA+TGG | 0.386200 | 1_4:-44842512 | None:intergenic |
| TAATTTCAAAGCAAAGAATA+AGG | 0.395526 | 1_4:+44846141 | Msa0164910:three_prime_UTR |
| TCTCAATATCCTTCAATTAA+GGG | 0.412926 | 1_4:+44845423 | Msa0164910:CDS |
| AAATTAACTCCCTTAATTGA+AGG | 0.418849 | 1_4:-44845432 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.425493 | 1_4:-44845893 | None:intergenic |
| GTCTATGCTCTCTCATCAAT+TGG | 0.426519 | 1_4:+44842432 | Msa0164910:CDS |
| ATAGAGGATGTAACAGTGTT+TGG | 0.430033 | 1_4:+44842514 | Msa0164910:CDS |
| AACTTCACACATTCTTCATC+TGG | 0.433585 | 1_4:-44845797 | None:intergenic |
| TAATTTCTAATGGTCCAGAT+TGG | 0.453045 | 1_4:-44845308 | None:intergenic |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1_4:+44842459 | Msa0164910:CDS |
| ATCTCAACATTGGTTGATGT+TGG | 0.463245 | 1_4:+44845366 | Msa0164910:CDS |
| CTTGTAGGGCTTGAGCATGT+TGG | 0.467262 | 1_4:+44845606 | Msa0164910:intron |
| GTCCAGATTGGCCCATTGCT+TGG | 0.468407 | 1_4:-44845296 | None:intergenic |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1_4:+44842449 | Msa0164910:CDS |
| AGTGATGTCTCAGCCATGTC+TGG | 0.482323 | 1_4:+44846034 | Msa0164910:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_4:-44845899 | None:intergenic |
| CTATGGATTAATGTTGAAAG+TGG | 0.496391 | 1_4:-44842495 | None:intergenic |
| CACAAAGCTTTACCAAAACA+TGG | 0.501741 | 1_4:+44845833 | Msa0164910:CDS |
| ACCATCTTCATTGGTACGAA+TGG | 0.502294 | 1_4:-44842397 | None:intergenic |
| CAAAACCTTTATATAACTTG+AGG | 0.507417 | 1_4:-44845338 | None:intergenic |
| GTAGGGCTTGAGCATGTTGG+AGG | 0.508594 | 1_4:+44845609 | Msa0164910:intron |
| AATTGTGTCCAAACTTTGAA+AGG | 0.512180 | 1_4:+44846166 | Msa0164910:three_prime_UTR |
| GAGAGCTTATGTAAGAGAGC+TGG | 0.513125 | 1_4:+44845986 | Msa0164910:CDS |
| CAAGATGCACCTACTCATCC+AGG | 0.521406 | 1_4:+44845474 | Msa0164910:CDS |
| AGTAAAATGGCATCACCACT+TGG | 0.524337 | 1_4:-44845651 | None:intergenic |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.524896 | 1_4:+44845378 | Msa0164910:CDS |
| CTCAGCCATGTCTGGAGTGA+TGG | 0.528544 | 1_4:+44846042 | Msa0164910:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_4:-44842329 | None:intergenic |
| TCCATTCGTACCAATGAAGA+TGG | 0.540221 | 1_4:+44842396 | Msa0164910:CDS |
| CTTTCAACATTAATCCATAG+AGG | 0.541916 | 1_4:+44842498 | Msa0164910:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_4:-44845898 | None:intergenic |
| TGAACGCATGTTGACTGTGT+TGG | 0.560083 | 1_4:+44842350 | Msa0164910:CDS |
| AAATAATCTTCCTACTAATG+AGG | 0.564642 | 1_4:+44842125 | Msa0164910:CDS |
| ACATTGGTTGATGTTGGAGG+TGG | 0.572639 | 1_4:+44845372 | Msa0164910:CDS |
| TCAACATTGGTTGATGTTGG+AGG | 0.582503 | 1_4:+44845369 | Msa0164910:CDS |
| CACTTGCAGGGGTGATGCAA+AGG | 0.585977 | 1_4:+44845170 | Msa0164910:intron |
| AAACTCCATCACTCCAGACA+TGG | 0.612342 | 1_4:-44846047 | None:intergenic |
| GGTGCATCTTGAACAGCTTG+TGG | 0.613069 | 1_4:-44845462 | None:intergenic |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_4:+44842325 | Msa0164910:CDS |
| TTTGGATTATATAATTCCAG+AGG | 0.632094 | 1_4:+44845868 | Msa0164910:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1_4:+44842462 | Msa0164910:CDS |
| ACAAAGCTTTACCAAAACAT+GGG | 0.663342 | 1_4:+44845834 | Msa0164910:CDS |
| ATGTTTGAAAGTGTTCCAAG+TGG | 0.739305 | 1_4:+44845636 | Msa0164910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTCTAATTTTTTTTTTA+GGG | - | chr1_4:44842612-44842631 | None:intergenic | 10.0% |
| !!! | TAATGTCTAATTTTTTTTTT+AGG | - | chr1_4:44842613-44842632 | None:intergenic | 10.0% |
| !!! | TATTAAAACATTTTTTTTGA+GGG | + | chr1_4:44844442-44844461 | Msa0164910:intron | 10.0% |
| !!! | AATAAAATATTTTTATCCTT+AGG | + | chr1_4:44844497-44844516 | Msa0164910:intron | 10.0% |
| !! | TATCTATCATATAAAAAATA+TGG | + | chr1_4:44844552-44844571 | Msa0164910:intron | 10.0% |
| !! | AATCATATACATATATATTA+CGG | + | chr1_4:44844785-44844804 | Msa0164910:intron | 10.0% |
| !! | AATAGTTAATTTATAGATTT+AGG | + | chr1_4:44844988-44845007 | Msa0164910:intron | 10.0% |
| !! | TGATTTAATGATAAAAAGAT+AGG | - | chr1_4:44842896-44842915 | None:intergenic | 15.0% |
| !!! | TTAAGTTTAAAATTATGCAT+TGG | - | chr1_4:44842992-44843011 | None:intergenic | 15.0% |
| !! | ATAATCTAGTAGATAAAATT+AGG | + | chr1_4:44843021-44843040 | Msa0164910:intron | 15.0% |
| !!! | AGTTTATCAAATAAAGTTTT+TGG | + | chr1_4:44843474-44843493 | Msa0164910:intron | 15.0% |
| !! | TAATAATGTAAACATTTGTT+TGG | + | chr1_4:44844158-44844177 | Msa0164910:intron | 15.0% |
| !! | AATAATGTAAACATTTGTTT+GGG | + | chr1_4:44844159-44844178 | Msa0164910:intron | 15.0% |
| !!! | TTATCTTTTTTTTTTTGGAA+AGG | - | chr1_4:44844281-44844300 | None:intergenic | 15.0% |
| !!! | CTATTAAAACATTTTTTTTG+AGG | + | chr1_4:44844441-44844460 | Msa0164910:intron | 15.0% |
| !!! | ATTAAAACATTTTTTTTGAG+GGG | + | chr1_4:44844443-44844462 | Msa0164910:intron | 15.0% |
| !! | ATCATATACATATATATTAC+GGG | + | chr1_4:44844786-44844805 | Msa0164910:intron | 15.0% |
| !! | TAAATATAGACATATTTGTA+TGG | + | chr1_4:44845131-44845150 | Msa0164910:intron | 15.0% |
| !!! | TTTATGGTACTTATTATTTT+TGG | - | chr1_4:44845576-44845595 | None:intergenic | 15.0% |
| !! | TACAAGCAAAATAAAATTTA+TGG | - | chr1_4:44845592-44845611 | None:intergenic | 15.0% |
| !!! | ATAAATTTTATTTTGCTTGT+AGG | + | chr1_4:44845591-44845610 | Msa0164910:intron | 15.0% |
| !!! | TAAATTTTATTTTGCTTGTA+GGG | + | chr1_4:44845592-44845611 | Msa0164910:intron | 15.0% |
| !!! | TTTAAATTTTGTTTATCATG+TGG | - | chr1_4:44845687-44845706 | None:intergenic | 15.0% |
| !! | TAAACAAAATTTAAACAGTT+TGG | + | chr1_4:44845692-44845711 | Msa0164910:intron | 15.0% |
| !!! | CATTTTTGCTAACTATTTTA+TGG | - | chr1_4:44842088-44842107 | None:intergenic | 20.0% |
| !!! | AAGATTATTTTGCTTAGAAT+TGG | - | chr1_4:44842115-44842134 | None:intergenic | 20.0% |
| !! | TTAAAAAAAGAGAAAGTCTT+AGG | - | chr1_4:44842739-44842758 | None:intergenic | 20.0% |
| !!! | GATTTTAGGTTTTCTTTTTT+TGG | - | chr1_4:44842793-44842812 | None:intergenic | 20.0% |
| !! | AAATCAACACATAATAAAAG+TGG | + | chr1_4:44842910-44842929 | Msa0164910:intron | 20.0% |
| !! | CAAAATATTAGCATAATTCA+AGG | - | chr1_4:44843297-44843316 | None:intergenic | 20.0% |
| !!! | TATGCTAATATTTTGAAGAT+AGG | + | chr1_4:44843302-44843321 | Msa0164910:intron | 20.0% |
| !!! | TTTGAATCTTAAGTTTTCAA+TGG | + | chr1_4:44843355-44843374 | Msa0164910:intron | 20.0% |
| !!! | TATTTAAGATTAGAGTTGTA+TGG | - | chr1_4:44843446-44843465 | None:intergenic | 20.0% |
| !!! | TTCAAATTTAACTTTCTAAG+TGG | - | chr1_4:44843546-44843565 | None:intergenic | 20.0% |
| !! | GTTGAAACAATTAATATCTA+TGG | - | chr1_4:44843724-44843743 | None:intergenic | 20.0% |
| !! | AAATGAAAATGATTTCATGT+GGG | - | chr1_4:44843812-44843831 | None:intergenic | 20.0% |
| !! | AAAATGAAAATGATTTCATG+TGG | - | chr1_4:44843813-44843832 | None:intergenic | 20.0% |
| !!! | AAATCATTTTCATTTTGACA+AGG | + | chr1_4:44843817-44843836 | Msa0164910:intron | 20.0% |
| !! | ACTCACTATTTATAGTATTA+GGG | + | chr1_4:44843869-44843888 | Msa0164910:intron | 20.0% |
| !! | TAAAATTCCAAAATCCAAAA+TGG | + | chr1_4:44844124-44844143 | Msa0164910:intron | 20.0% |
| !! | ATAATGTAAACATTTGTTTG+GGG | + | chr1_4:44844160-44844179 | Msa0164910:intron | 20.0% |
| !!! | TCTGAAAAATACTTTTATAG+AGG | + | chr1_4:44844312-44844331 | Msa0164910:intron | 20.0% |
| !!! | CTGAAAAATACTTTTATAGA+GGG | + | chr1_4:44844313-44844332 | Msa0164910:intron | 20.0% |
| !!! | GAAAAAAAGTTTTACTAAGT+CGG | + | chr1_4:44844356-44844375 | Msa0164910:intron | 20.0% |
| !! | TCTTTGACGAAAAATATTAA+TGG | - | chr1_4:44844602-44844621 | None:intergenic | 20.0% |
| !!! | AAATTATTTTTTGTGTGTGA+TGG | - | chr1_4:44844819-44844838 | None:intergenic | 20.0% |
| !! | GTATATACTTTATATGAACA+CGG | + | chr1_4:44844853-44844872 | Msa0164910:intron | 20.0% |
| !! | AATGGGAATATAAAAATGAT+TGG | + | chr1_4:44844920-44844939 | Msa0164910:intron | 20.0% |
| !! | ATGGGAATATAAAAATGATT+GGG | + | chr1_4:44844921-44844940 | Msa0164910:intron | 20.0% |
| !! | CAAATATGTCTATATTTACT+AGG | - | chr1_4:44845129-44845148 | None:intergenic | 20.0% |
| !!! | AATCTTTTTCAAAGTATCAA+TGG | + | chr1_4:44845219-44845238 | Msa0164910:CDS | 20.0% |
| !!! | ATCTTTTTCAAAGTATCAAT+GGG | + | chr1_4:44845220-44845239 | Msa0164910:CDS | 20.0% |
| !!! | ATTCAATTCTTTATTTGTCT+TGG | - | chr1_4:44845265-44845284 | None:intergenic | 20.0% |
| !!! | AAGTTATATAAAGGTTTTGA+AGG | + | chr1_4:44845342-44845361 | Msa0164910:CDS | 20.0% |
| !!! | ATTGATTGATATATTTTACC+TGG | - | chr1_4:44845495-44845514 | None:intergenic | 20.0% |
| !!! | TATTTTTGGCTTAAAGTAAA+GGG | - | chr1_4:44845562-44845581 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGCTTAAAGTAA+AGG | - | chr1_4:44845563-44845582 | None:intergenic | 20.0% |
| !! | TAATTTCAAAGCAAAGAATA+AGG | + | chr1_4:44846141-44846160 | Msa0164910:three_prime_UTR | 20.0% |
| ! | AAATAATCTTCCTACTAATG+AGG | + | chr1_4:44842125-44842144 | Msa0164910:CDS | 25.0% |
| !!! | GCAAGTGTTTTTAAGATTTT+AGG | - | chr1_4:44842807-44842826 | None:intergenic | 25.0% |
| !!! | TATGTCTACGTTATTTCTTT+AGG | + | chr1_4:44842838-44842857 | Msa0164910:intron | 25.0% |
| ! | ATGATAAAAAGATAGGACTT+AGG | - | chr1_4:44842889-44842908 | None:intergenic | 25.0% |
| !! | ATAGTGCAGATTTTTAAACT+AGG | + | chr1_4:44843154-44843173 | Msa0164910:intron | 25.0% |
| ! | TTAAACTAGGTCAAGTAATA+TGG | + | chr1_4:44843167-44843186 | Msa0164910:intron | 25.0% |
| ! | TAAACTAGGTCAAGTAATAT+GGG | + | chr1_4:44843168-44843187 | Msa0164910:intron | 25.0% |
| !!! | TGCTGATTTGTTAAATTGTT+AGG | - | chr1_4:44843404-44843423 | None:intergenic | 25.0% |
| ! | TTGTCAAAAGAAGTTAACAA+GGG | - | chr1_4:44843515-44843534 | None:intergenic | 25.0% |
| ! | TATTTAAAAGTTTGAACACG+TGG | - | chr1_4:44843673-44843692 | None:intergenic | 25.0% |
| ! | GAAACAATTAATATCTATGG+TGG | - | chr1_4:44843721-44843740 | None:intergenic | 25.0% |
| ! | GACTCACTATTTATAGTATT+AGG | + | chr1_4:44843868-44843887 | Msa0164910:intron | 25.0% |
| !! | TCAAAATTGATTCATCATGA+GGG | - | chr1_4:44843916-44843935 | None:intergenic | 25.0% |
| !! | ATCAAAATTGATTCATCATG+AGG | - | chr1_4:44843917-44843936 | None:intergenic | 25.0% |
| !! | TCATGATGAATCAATTTTGA+TGG | + | chr1_4:44843916-44843935 | Msa0164910:intron | 25.0% |
| !! | AATGATGGAATCAATAATGA+AGG | - | chr1_4:44843993-44844012 | None:intergenic | 25.0% |
| ! | TTCATTCTCATATAATGCAT+CGG | - | chr1_4:44844039-44844058 | None:intergenic | 25.0% |
| !! | TAAATCACCATTTTGGATTT+TGG | - | chr1_4:44844134-44844153 | None:intergenic | 25.0% |
| !! | TTATGAGTAAATCACCATTT+TGG | - | chr1_4:44844141-44844160 | None:intergenic | 25.0% |
| !!! | TATGGTTTTAAGATAGATGA+TGG | + | chr1_4:44844570-44844589 | Msa0164910:intron | 25.0% |
| ! | CTATTGAAATTCAACAAATC+CGG | + | chr1_4:44844634-44844653 | Msa0164910:intron | 25.0% |
| ! | AAATTTGGATTCCATATTGT+TGG | - | chr1_4:44844660-44844679 | None:intergenic | 25.0% |
| ! | TTTGGACTATCACTTAAATT+TGG | - | chr1_4:44844675-44844694 | None:intergenic | 25.0% |
| ! | AAGTGATAGTCCAAATATTA+CGG | + | chr1_4:44844680-44844699 | Msa0164910:intron | 25.0% |
| ! | AATAAAATATTGGTGTGTGA+TGG | - | chr1_4:44844714-44844733 | None:intergenic | 25.0% |
| ! | TGGGAATATAAAAATGATTG+GGG | + | chr1_4:44844922-44844941 | Msa0164910:intron | 25.0% |
| ! | AGCATTATAAGAAACTTCTA+CGG | - | chr1_4:44845050-44845069 | None:intergenic | 25.0% |
| !! | TGAAAAAGATTTTTGACATC+AGG | - | chr1_4:44845210-44845229 | None:intergenic | 25.0% |
| !!! | AGGATCCTTTTAATTTCTAA+TGG | - | chr1_4:44845321-44845340 | None:intergenic | 25.0% |
| ! | CAAAACCTTTATATAACTTG+AGG | - | chr1_4:44845341-44845360 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | + | chr1_4:44845423-44845442 | Msa0164910:CDS | 25.0% |
| ! | AAATTAACTCCCTTAATTGA+AGG | - | chr1_4:44845435-44845454 | None:intergenic | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | + | chr1_4:44845868-44845887 | Msa0164910:CDS | 25.0% |
| !! | TGGATTTTCCAAATTTCATA+TGG | + | chr1_4:44846006-44846025 | Msa0164910:CDS | 25.0% |
| !! | ACTTTTTCTACCTCATTAGT+AGG | - | chr1_4:44842138-44842157 | None:intergenic | 30.0% |
| !!! | CGTTGTTACTATGTTTTAGT+AGG | + | chr1_4:44842178-44842197 | Msa0164910:CDS | 30.0% |
| TTCTTTCTTACCATCTTCAT+TGG | - | chr1_4:44842409-44842428 | None:intergenic | 30.0% | |
| AATTGGTCAATACTTTGCAT+TGG | + | chr1_4:44842449-44842468 | Msa0164910:CDS | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | + | chr1_4:44842459-44842478 | Msa0164910:CDS | 30.0% | |
| ! | CTATGGATTAATGTTGAAAG+TGG | - | chr1_4:44842498-44842517 | None:intergenic | 30.0% |
| CTTTCAACATTAATCCATAG+AGG | + | chr1_4:44842498-44842517 | Msa0164910:CDS | 30.0% | |
| TTAGGTGATCACAATCATTT+AGG | - | chr1_4:44842721-44842740 | None:intergenic | 30.0% | |
| !! | ACGTTATTTCTTTAGGAGTT+AGG | + | chr1_4:44842845-44842864 | Msa0164910:intron | 30.0% |
| !! | CGTTATTTCTTTAGGAGTTA+GGG | + | chr1_4:44842846-44842865 | Msa0164910:intron | 30.0% |
| !! | GGTACCTCTAAAATTATAGA+GGG | - | chr1_4:44843254-44843273 | None:intergenic | 30.0% |
| !! | TGGTACCTCTAAAATTATAG+AGG | - | chr1_4:44843255-44843274 | None:intergenic | 30.0% |
| TAAGATTAGAGTTGTATGGA+GGG | - | chr1_4:44843442-44843461 | None:intergenic | 30.0% | |
| TTAAGATTAGAGTTGTATGG+AGG | - | chr1_4:44843443-44843462 | None:intergenic | 30.0% | |
| GTTGTCAAAAGAAGTTAACA+AGG | - | chr1_4:44843516-44843535 | None:intergenic | 30.0% | |
| TTAATATCTATGGTGGTTGA+TGG | - | chr1_4:44843714-44843733 | None:intergenic | 30.0% | |
| !! | ATTTGTTTGGGGCATATTTT+CGG | + | chr1_4:44844171-44844190 | Msa0164910:intron | 30.0% |
| AAAAAGACCTCATATATGTC+TGG | - | chr1_4:44844218-44844237 | None:intergenic | 30.0% | |
| TGGCACAAATTAAAAACCTA+AGG | - | chr1_4:44844516-44844535 | None:intergenic | 30.0% | |
| !!! | GTTTTTAATTTGTGCCATGA+GGG | + | chr1_4:44844519-44844538 | Msa0164910:intron | 30.0% |
| AGTGATAGTCCAAATATTAC+GGG | + | chr1_4:44844681-44844700 | Msa0164910:intron | 30.0% | |
| TATCTTAAACTGACCATTCA+TGG | + | chr1_4:44844893-44844912 | Msa0164910:intron | 30.0% | |
| ATCTTAAACTGACCATTCAT+GGG | + | chr1_4:44844894-44844913 | Msa0164910:intron | 30.0% | |
| GGGAATATAAAAATGATTGG+GGG | + | chr1_4:44844923-44844942 | Msa0164910:intron | 30.0% | |
| AAAAGATTATATGCACTTGC+AGG | + | chr1_4:44845157-44845176 | Msa0164910:intron | 30.0% | |
| AAAGATTATATGCACTTGCA+GGG | + | chr1_4:44845158-44845177 | Msa0164910:intron | 30.0% | |
| ! | TGATATTTTCAACCAAGCAA+TGG | + | chr1_4:44845284-44845303 | Msa0164910:CDS | 30.0% |
| ! | GATATTTTCAACCAAGCAAT+GGG | + | chr1_4:44845285-44845304 | Msa0164910:CDS | 30.0% |
| TAATTTCTAATGGTCCAGAT+TGG | - | chr1_4:44845311-44845330 | None:intergenic | 30.0% | |
| CTGGACCATTAGAAATTAAA+AGG | + | chr1_4:44845313-44845332 | Msa0164910:CDS | 30.0% | |
| AGGATCCTCAAGTTATATAA+AGG | + | chr1_4:44845333-44845352 | Msa0164910:CDS | 30.0% | |
| !! | TTTTGAAGGAATCTCAACAT+TGG | + | chr1_4:44845356-44845375 | Msa0164910:CDS | 30.0% |
| ! | TTGAGAGAGAATGAGTTTTA+GGG | - | chr1_4:44845409-44845428 | None:intergenic | 30.0% |
| ! | ATTGAGAGAGAATGAGTTTT+AGG | - | chr1_4:44845410-44845429 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | + | chr1_4:44845422-44845441 | Msa0164910:CDS | 30.0% | |
| ! | TATATTTTACCTGGATGAGT+AGG | - | chr1_4:44845486-44845505 | None:intergenic | 30.0% |
| ACAAAGCTTTACCAAAACAT+GGG | + | chr1_4:44845834-44845853 | Msa0164910:CDS | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | + | chr1_4:44845938-44845957 | Msa0164910:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | + | chr1_4:44845943-44845962 | Msa0164910:CDS | 30.0% |
| AATTGTGTCCAAACTTTGAA+AGG | + | chr1_4:44846166-44846185 | Msa0164910:three_prime_UTR | 30.0% | |
| AAGTTACACCTTTCAAAGTT+TGG | - | chr1_4:44846177-44846196 | None:intergenic | 30.0% | |
| ATAGCAGCATTTAGTATTGC+AGG | - | chr1_4:44842210-44842229 | None:intergenic | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | + | chr1_4:44842462-44842481 | Msa0164910:CDS | 35.0% | |
| AAACACTGTTACATCCTCTA+TGG | - | chr1_4:44842515-44842534 | None:intergenic | 35.0% | |
| ATAGAGGATGTAACAGTGTT+TGG | + | chr1_4:44842514-44842533 | Msa0164910:CDS | 35.0% | |
| CTAGGTCAAGTAATATGAGA+CGG | - | chr1_4:44842951-44842970 | None:intergenic | 35.0% | |
| ! | CTCTCCCTCTATAATTTTAG+AGG | + | chr1_4:44843247-44843266 | Msa0164910:intron | 35.0% |
| TACCAAGCATTAGACCAAAA+GGG | + | chr1_4:44843270-44843289 | Msa0164910:intron | 35.0% | |
| AAGATTAGAGTTGTATGGAG+GGG | - | chr1_4:44843441-44843460 | None:intergenic | 35.0% | |
| TCAAAAGAAGTTAACAAGGG+AGG | - | chr1_4:44843512-44843531 | None:intergenic | 35.0% | |
| TGCATTAAGCAACAATTGAG+TGG | - | chr1_4:44843614-44843633 | None:intergenic | 35.0% | |
| TAAAAGTTTGAACACGTGGA+AGG | - | chr1_4:44843669-44843688 | None:intergenic | 35.0% | |
| TGCATGATTTGACACTCATT+TGG | + | chr1_4:44843747-44843766 | Msa0164910:intron | 35.0% | |
| CATTTGGAAAATCCCACATA+TGG | + | chr1_4:44843763-44843782 | Msa0164910:intron | 35.0% | |
| AATCCCACATATGGATGAAT+TGG | + | chr1_4:44843772-44843791 | Msa0164910:intron | 35.0% | |
| ATCCCACATATGGATGAATT+GGG | + | chr1_4:44843773-44843792 | Msa0164910:intron | 35.0% | |
| ATAGTGAGTCTGATGTTGAA+TGG | - | chr1_4:44843858-44843877 | None:intergenic | 35.0% | |
| GAGAATCTTGACTTACTAGT+GGG | + | chr1_4:44843938-44843957 | Msa0164910:intron | 35.0% | |
| TATAATGCATCGGAAGTTGA+GGG | - | chr1_4:44844029-44844048 | None:intergenic | 35.0% | |
| ATATAATGCATCGGAAGTTG+AGG | - | chr1_4:44844030-44844049 | None:intergenic | 35.0% | |
| ATCCAAACCAGACATATATG+AGG | + | chr1_4:44844208-44844227 | Msa0164910:intron | 35.0% | |
| !!! | GGTTTTTAATTTGTGCCATG+AGG | + | chr1_4:44844518-44844537 | Msa0164910:intron | 35.0% |
| GGTTATAGTCCCGTAATATT+TGG | - | chr1_4:44844693-44844712 | None:intergenic | 35.0% | |
| TGACCATTCATGGGTAAAAT+GGG | + | chr1_4:44844903-44844922 | Msa0164910:intron | 35.0% | |
| ! | ATTCCCATTTTACCCATGAA+TGG | - | chr1_4:44844909-44844928 | None:intergenic | 35.0% |
| AAGATTATATGCACTTGCAG+GGG | + | chr1_4:44845159-44845178 | Msa0164910:intron | 35.0% | |
| TGATGCAAAGGATGCAATAT+TGG | + | chr1_4:44845182-44845201 | Msa0164910:CDS | 35.0% | |
| ! | ATCTCAACATTGGTTGATGT+TGG | + | chr1_4:44845366-44845385 | Msa0164910:CDS | 35.0% |
| !! | ATGTTTGAAAGTGTTCCAAG+TGG | + | chr1_4:44845636-44845655 | Msa0164910:CDS | 35.0% |
| !!! | TGGTGATGCCATTTTACTAA+AGG | + | chr1_4:44845656-44845675 | Msa0164910:CDS | 35.0% |
| !!! | GATGCCATTTTACTAAAGGT+TGG | + | chr1_4:44845660-44845679 | Msa0164910:intron | 35.0% |
| TGGACCAACCTTTAGTAAAA+TGG | - | chr1_4:44845667-44845686 | None:intergenic | 35.0% | |
| AACTTCACACATTCTTCATC+TGG | - | chr1_4:44845800-44845819 | None:intergenic | 35.0% | |
| !!! | CATGTTTTGGTAAAGCTTTG+TGG | - | chr1_4:44845835-44845854 | None:intergenic | 35.0% |
| CACAAAGCTTTACCAAAACA+TGG | + | chr1_4:44845833-44845852 | Msa0164910:CDS | 35.0% | |
| ! | ACAATCACTTTCCCATGTTT+TGG | - | chr1_4:44845848-44845867 | None:intergenic | 35.0% |
| ! | ACATGGGAAAGTGATTGTTT+TGG | + | chr1_4:44845850-44845869 | Msa0164910:CDS | 35.0% |
| TTAGACATATTGCTAGGGTT+TGG | - | chr1_4:44845896-44845915 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | - | chr1_4:44845901-44845920 | None:intergenic | 35.0% | |
| ACTGCAAGCCATATGAAATT+TGG | - | chr1_4:44846017-44846036 | None:intergenic | 35.0% | |
| TCCAAATCAACACCCTGAAT+TGG | + | chr1_4:44842317-44842336 | Msa0164910:CDS | 40.0% | |
| TCCATTCGTACCAATGAAGA+TGG | + | chr1_4:44842396-44842415 | Msa0164910:CDS | 40.0% | |
| ACCATCTTCATTGGTACGAA+TGG | - | chr1_4:44842400-44842419 | None:intergenic | 40.0% | |
| GTCTATGCTCTCTCATCAAT+TGG | + | chr1_4:44842432-44842451 | Msa0164910:CDS | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | + | chr1_4:44842471-44842490 | Msa0164910:CDS | 40.0% | |
| ! | TTTCTTTAGGAGTTAGGGCT+AGG | + | chr1_4:44842851-44842870 | Msa0164910:intron | 40.0% |
| ! | TTCTTTAGGAGTTAGGGCTA+GGG | + | chr1_4:44842852-44842871 | Msa0164910:intron | 40.0% |
| CTAGGTCAAGTAATATGGGA+CGG | + | chr1_4:44843172-44843191 | Msa0164910:intron | 40.0% | |
| GTACCAAGCATTAGACCAAA+AGG | + | chr1_4:44843269-44843288 | Msa0164910:intron | 40.0% | |
| ! | GCATAATTCAAGGACCCTTT+TGG | - | chr1_4:44843287-44843306 | None:intergenic | 40.0% |
| ! | GTGGATACTAGAGCATCATT+AGG | - | chr1_4:44843595-44843614 | None:intergenic | 40.0% |
| GTCCCAATTCATCCATATGT+GGG | - | chr1_4:44843778-44843797 | None:intergenic | 40.0% | |
| TGTCCCAATTCATCCATATG+TGG | - | chr1_4:44843779-44843798 | None:intergenic | 40.0% | |
| GGAGAATCTTGACTTACTAG+TGG | + | chr1_4:44843937-44843956 | Msa0164910:intron | 40.0% | |
| GGAAACGTCAACATCAATGA+TGG | - | chr1_4:44844008-44844027 | None:intergenic | 40.0% | |
| GACCTCATATATGTCTGGTT+TGG | - | chr1_4:44844213-44844232 | None:intergenic | 40.0% | |
| ACTAAGTCGGACACAAGTTA+AGG | + | chr1_4:44844369-44844388 | Msa0164910:intron | 40.0% | |
| AACAAATCCGGCCAACAATA+TGG | + | chr1_4:44844646-44844665 | Msa0164910:intron | 40.0% | |
| TTGGATTCCATATTGTTGGC+CGG | - | chr1_4:44844656-44844675 | None:intergenic | 40.0% | |
| CTGACCATTCATGGGTAAAA+TGG | + | chr1_4:44844902-44844921 | Msa0164910:intron | 40.0% | |
| ! | TCAACATTGGTTGATGTTGG+AGG | + | chr1_4:44845369-44845388 | Msa0164910:CDS | 40.0% |
| AGTAAAATGGCATCACCACT+TGG | - | chr1_4:44845654-44845673 | None:intergenic | 40.0% | |
| TGCAGCTTGTATGTCATAAC+TGG | + | chr1_4:44845774-44845793 | Msa0164910:intron | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | - | chr1_4:44845902-44845921 | None:intergenic | 40.0% | |
| !! | GCCAATTCAGGGTGTTGATT+TGG | - | chr1_4:44842321-44842340 | None:intergenic | 45.0% |
| ! | TGAACGCATGTTGACTGTGT+TGG | + | chr1_4:44842350-44842369 | Msa0164910:CDS | 45.0% |
| GGATAAAGATGGAGGCTCTT+TGG | + | chr1_4:44842470-44842489 | Msa0164910:CDS | 45.0% | |
| ! | TCTTTAGGAGTTAGGGCTAG+GGG | + | chr1_4:44842853-44842872 | Msa0164910:intron | 45.0% |
| CATACGTGACAGAGTCAACT+AGG | - | chr1_4:44842969-44842988 | None:intergenic | 45.0% | |
| GTCAAGTAATATGGGACGGA+GGG | + | chr1_4:44843176-44843195 | Msa0164910:intron | 45.0% | |
| ! | GACCCTTTTGGTCTAATGCT+TGG | - | chr1_4:44843275-44843294 | None:intergenic | 45.0% |
| GATACTAATGTGTGCCCTCA+TGG | - | chr1_4:44844536-44844555 | None:intergenic | 45.0% | |
| TGGGGGATAGAGATGTAGTT+AGG | + | chr1_4:44844940-44844959 | Msa0164910:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGAGG+TGG | + | chr1_4:44845372-44845391 | Msa0164910:CDS | 45.0% |
| GAGAGCTTATGTAAGAGAGC+TGG | + | chr1_4:44845986-44846005 | Msa0164910:CDS | 45.0% | |
| AAACTCCATCACTCCAGACA+TGG | - | chr1_4:44846050-44846069 | None:intergenic | 45.0% | |
| !!! | TAAATTTATCTTTTTTTTTT+TGG | - | chr1_4:44844286-44844305 | None:intergenic | 5.0% |
| !! | CAAAATATAAAATAAAATAT+TGG | - | chr1_4:44844724-44844743 | None:intergenic | 5.0% |
| !!! | AAAATATTAGATTTTTTTTA+AGG | - | chr1_4:44845741-44845760 | None:intergenic | 5.0% |
| AACACCCTGAATTGGCTGAG+AGG | + | chr1_4:44842325-44842344 | Msa0164910:CDS | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | - | chr1_4:44842332-44842351 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | - | chr1_4:44842333-44842352 | None:intergenic | 50.0% | |
| GGTCAAGTAATATGGGACGG+AGG | + | chr1_4:44843175-44843194 | Msa0164910:intron | 50.0% | |
| AACCAAGCAATGGGCCAATC+TGG | + | chr1_4:44845294-44845313 | Msa0164910:CDS | 50.0% | |
| GTTGATGTTGGAGGTGGAGT+AGG | + | chr1_4:44845378-44845397 | Msa0164910:CDS | 50.0% | |
| GGTGCATCTTGAACAGCTTG+TGG | - | chr1_4:44845465-44845484 | None:intergenic | 50.0% | |
| CAAGATGCACCTACTCATCC+AGG | + | chr1_4:44845474-44845493 | Msa0164910:CDS | 50.0% | |
| CTTGTAGGGCTTGAGCATGT+TGG | + | chr1_4:44845606-44845625 | Msa0164910:intron | 50.0% | |
| AGTGATGTCTCAGCCATGTC+TGG | + | chr1_4:44846034-44846053 | Msa0164910:CDS | 50.0% | |
| TAGGAGTTAGGGCTAGGGGT+CGG | + | chr1_4:44842857-44842876 | Msa0164910:intron | 55.0% | |
| CACTTGCAGGGGTGATGCAA+AGG | + | chr1_4:44845170-44845189 | Msa0164910:intron | 55.0% | |
| ! | GTCCAGATTGGCCCATTGCT+TGG | - | chr1_4:44845299-44845318 | None:intergenic | 55.0% |
| GTAGGGCTTGAGCATGTTGG+AGG | + | chr1_4:44845609-44845628 | Msa0164910:intron | 55.0% | |
| TTGCTAGGGTTTGGCACCTC+TGG | - | chr1_4:44845887-44845906 | None:intergenic | 55.0% | |
| ! | CTCAGCCATGTCTGGAGTGA+TGG | + | chr1_4:44846042-44846061 | Msa0164910:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 44842062 | 44846317 | 44842062 | ID=Msa0164910;Name=Msa0164910 |
| chr1_4 | mRNA | 44842062 | 44846317 | 44842062 | ID=Msa0164910-mRNA-1;Parent=Msa0164910;Name=Msa0164910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=43|1|1|1|1|1|4|239|370 |
| chr1_4 | exon | 44842062 | 44842535 | 44842062 | ID=Msa0164910-mRNA-1:exon:12870;Parent=Msa0164910-mRNA-1 |
| chr1_4 | exon | 44845179 | 44845495 | 44845179 | ID=Msa0164910-mRNA-1:exon:12871;Parent=Msa0164910-mRNA-1 |
| chr1_4 | exon | 44845613 | 44845677 | 44845613 | ID=Msa0164910-mRNA-1:exon:12872;Parent=Msa0164910-mRNA-1 |
| chr1_4 | exon | 44845779 | 44846317 | 44845779 | ID=Msa0164910-mRNA-1:exon:12873;Parent=Msa0164910-mRNA-1 |
| chr1_4 | five_prime_UTR | 44842062 | 44842104 | 44842062 | ID=Msa0164910-mRNA-1:five_prime_utr;Parent=Msa0164910-mRNA-1 |
| chr1_4 | CDS | 44842105 | 44842535 | 44842105 | ID=Msa0164910-mRNA-1:cds;Parent=Msa0164910-mRNA-1 |
| chr1_4 | CDS | 44845179 | 44845495 | 44845179 | ID=Msa0164910-mRNA-1:cds;Parent=Msa0164910-mRNA-1 |
| chr1_4 | CDS | 44845613 | 44845677 | 44845613 | ID=Msa0164910-mRNA-1:cds;Parent=Msa0164910-mRNA-1 |
| chr1_4 | CDS | 44845779 | 44846078 | 44845779 | ID=Msa0164910-mRNA-1:cds;Parent=Msa0164910-mRNA-1 |
| chr1_4 | three_prime_UTR | 44846079 | 44846317 | 44846079 | ID=Msa0164910-mRNA-1:three_prime_utr;Parent=Msa0164910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
