Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153980 | XP_013466817.1 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 735 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153980 | sp|P93324|CHOMT_MEDSA | 51.351 | 370 | 172 | 6 | 5 | 370 | 7 | 372 | 2.61e-131 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153980 | A0A072VHJ4 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 735 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015090 | Msa0153980 | 0.820829 | 5.579028e-53 | -8.615850e-47 |
| Msa0047460 | Msa0153980 | 0.805958 | 1.038108e-49 | -8.615850e-47 |
| Msa0049750 | Msa0153980 | 0.816914 | 4.326356e-52 | -8.615850e-47 |
| Msa0062970 | Msa0153980 | 0.866773 | 2.230487e-65 | -8.615850e-47 |
| Msa0065950 | Msa0153980 | 0.825410 | 4.758549e-54 | -8.615850e-47 |
| Msa0107400 | Msa0153980 | 0.965446 | 1.290761e-124 | -8.615850e-47 |
| Msa0153830 | Msa0153980 | 0.800197 | 1.613908e-48 | -8.615850e-47 |
| Msa0153980 | Msa0164910 | 0.980675 | 9.038878e-151 | -8.615850e-47 |
| Msa0153980 | Msa0301170 | 0.850302 | 1.853722e-60 | -8.615850e-47 |
| Msa0153980 | Msa0320430 | 0.825257 | 5.173523e-54 | -8.615850e-47 |
| Msa0153980 | Msa0321080 | 0.801796 | 7.605134e-49 | -8.615850e-47 |
| Msa0153980 | Msa0329700 | 0.810256 | 1.261926e-50 | -8.615850e-47 |
| Msa0153980 | Msa0331020 | 0.828776 | 7.449170e-55 | -8.615850e-47 |
| Msa0153980 | Msa0484630 | 0.801946 | 7.081189e-49 | -8.615850e-47 |
| Msa0153980 | Msa0600590 | 0.801406 | 9.139371e-49 | -8.615850e-47 |
| Msa0153980 | Msa0741400 | 0.805088 | 1.580543e-49 | -8.615850e-47 |
| Msa0153980 | Msa0812950 | 0.810087 | 1.372143e-50 | -8.615850e-47 |
| Msa0153980 | Msa0871430 | 0.816741 | 4.730576e-52 | -8.615850e-47 |
| Msa0153980 | Msa0934840 | 0.807716 | 4.411708e-50 | -8.615850e-47 |
| Msa0153980 | Msa1006730 | 0.806076 | 9.804135e-50 | -8.615850e-47 |
| Msa0153980 | Msa1008390 | 0.813530 | 2.442492e-51 | -8.615850e-47 |
| Msa0153980 | Msa1008450 | 0.829989 | 3.780385e-55 | -8.615850e-47 |
| Msa0153980 | Msa1013070 | 0.862459 | 4.992797e-64 | -8.615850e-47 |
| Msa0153980 | Msa1023300 | 0.805767 | 1.138650e-49 | -8.615850e-47 |
| Msa0153980 | Msa1094280 | 0.843637 | 1.239769e-58 | -8.615850e-47 |
| Msa0153980 | Msa1098900 | 0.806690 | 7.276140e-50 | -8.615850e-47 |
| Msa0153980 | Msa1098940 | 0.814091 | 1.837991e-51 | -8.615850e-47 |
| Msa0153980 | Msa1129550 | 0.803652 | 3.146935e-49 | -8.615850e-47 |
| Msa0153980 | Msa1129730 | 0.800445 | 1.436287e-48 | -8.615850e-47 |
| Msa0153980 | Msa1239620 | 0.804847 | 1.774773e-49 | -8.615850e-47 |
| Msa0153980 | Msa1305180 | 0.801760 | 7.734737e-49 | -8.615850e-47 |
| Msa0153980 | Msa1305330 | 0.800511 | 1.392503e-48 | -8.615850e-47 |
| Msa0153980 | Msa1348850 | 0.822820 | 1.930590e-53 | -8.615850e-47 |
| Msa0153980 | Msa1352660 | 0.801006 | 1.103577e-48 | -8.615850e-47 |
| Msa0153980 | Msa1432810 | 0.835796 | 1.361871e-56 | -8.615850e-47 |
| Msa0153980 | Msa1438840 | 0.801378 | 9.262025e-49 | -8.615850e-47 |
| Msa0153980 | Msa1449750 | 0.805278 | 1.442089e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153980 | MtrunA17_Chr1g0163611 | 95.405 | 370 | 17 | 0 | 1 | 370 | 1 | 370 | 0.0 | 735 |
| Msa0153980 | MtrunA17_Chr1g0163601 | 90.541 | 370 | 35 | 0 | 1 | 370 | 1 | 370 | 0.0 | 711 |
| Msa0153980 | MtrunA17_Chr1g0163621 | 81.892 | 370 | 66 | 1 | 1 | 370 | 16 | 384 | 0.0 | 610 |
| Msa0153980 | MtrunA17_Chr7g0218131 | 51.482 | 371 | 172 | 6 | 3 | 370 | 5 | 370 | 1.70e-134 | 388 |
| Msa0153980 | MtrunA17_Chr1g0200491 | 50.811 | 370 | 174 | 6 | 5 | 370 | 7 | 372 | 1.63e-131 | 381 |
| Msa0153980 | MtrunA17_Chr7g0218261 | 50.541 | 370 | 176 | 5 | 3 | 370 | 4 | 368 | 3.02e-131 | 380 |
| Msa0153980 | MtrunA17_Chr2g0307521 | 51.714 | 350 | 161 | 5 | 23 | 370 | 20 | 363 | 5.81e-129 | 374 |
| Msa0153980 | MtrunA17_Chr7g0218181 | 49.734 | 376 | 174 | 7 | 1 | 370 | 1 | 367 | 1.10e-127 | 371 |
| Msa0153980 | MtrunA17_Chr7g0218211 | 48.518 | 371 | 183 | 6 | 3 | 370 | 4 | 369 | 5.57e-127 | 369 |
| Msa0153980 | MtrunA17_Chr7g0218271 | 49.062 | 373 | 183 | 6 | 3 | 370 | 5 | 375 | 1.23e-124 | 363 |
| Msa0153980 | MtrunA17_Chr7g0218301 | 48.925 | 372 | 183 | 6 | 4 | 370 | 6 | 375 | 2.75e-123 | 360 |
| Msa0153980 | MtrunA17_Chr3g0085211 | 50.696 | 359 | 169 | 6 | 14 | 370 | 18 | 370 | 1.15e-122 | 358 |
| Msa0153980 | MtrunA17_Chr3g0085201 | 48.619 | 362 | 176 | 7 | 12 | 370 | 3 | 357 | 2.12e-114 | 337 |
| Msa0153980 | MtrunA17_Chr3g0128011 | 41.667 | 372 | 206 | 6 | 1 | 370 | 55 | 417 | 2.71e-103 | 311 |
| Msa0153980 | MtrunA17_Chr7g0276401 | 44.474 | 371 | 195 | 8 | 3 | 370 | 13 | 375 | 4.94e-99 | 298 |
| Msa0153980 | MtrunA17_Chr5g0448091 | 39.779 | 362 | 206 | 7 | 14 | 370 | 9 | 363 | 2.54e-91 | 278 |
| Msa0153980 | MtrunA17_Chr8g0367441 | 41.292 | 356 | 198 | 6 | 19 | 370 | 29 | 377 | 9.42e-91 | 277 |
| Msa0153980 | MtrunA17_Chr7g0276411 | 40.327 | 367 | 207 | 8 | 9 | 370 | 3 | 362 | 4.28e-89 | 272 |
| Msa0153980 | MtrunA17_Chr8g0367451 | 40.730 | 356 | 200 | 6 | 19 | 370 | 28 | 376 | 1.16e-88 | 272 |
| Msa0153980 | MtrunA17_Chr8g0367491 | 39.216 | 357 | 200 | 7 | 21 | 370 | 30 | 376 | 7.56e-88 | 270 |
| Msa0153980 | MtrunA17_Chr8g0367501 | 38.211 | 369 | 216 | 7 | 8 | 370 | 3 | 365 | 1.92e-85 | 265 |
| Msa0153980 | MtrunA17_Chr8g0367381 | 38.941 | 321 | 170 | 5 | 19 | 336 | 29 | 326 | 7.33e-76 | 237 |
| Msa0153980 | MtrunA17_Chr8g0345851 | 43.662 | 284 | 148 | 6 | 93 | 370 | 13 | 290 | 1.50e-75 | 235 |
| Msa0153980 | MtrunA17_Chr1g0170931 | 90.984 | 122 | 11 | 0 | 22 | 143 | 5 | 126 | 1.19e-73 | 224 |
| Msa0153980 | MtrunA17_Chr2g0314271 | 36.944 | 360 | 210 | 9 | 16 | 370 | 7 | 354 | 4.28e-64 | 208 |
| Msa0153980 | MtrunA17_Chr3g0130011 | 35.457 | 361 | 217 | 9 | 15 | 370 | 9 | 358 | 1.91e-62 | 204 |
| Msa0153980 | MtrunA17_Chr3g0130061 | 36.188 | 362 | 213 | 11 | 15 | 370 | 9 | 358 | 2.18e-59 | 196 |
| Msa0153980 | MtrunA17_Chr4g0022021 | 33.626 | 342 | 199 | 13 | 38 | 369 | 44 | 367 | 1.15e-50 | 173 |
| Msa0153980 | MtrunA17_Chr4g0021981 | 33.628 | 339 | 203 | 12 | 38 | 369 | 44 | 367 | 4.11e-49 | 169 |
| Msa0153980 | MtrunA17_Chr6g0482291 | 43.011 | 186 | 95 | 3 | 186 | 370 | 1 | 176 | 1.21e-48 | 162 |
| Msa0153980 | MtrunA17_Chr3g0121301 | 39.691 | 194 | 113 | 3 | 160 | 349 | 149 | 342 | 3.26e-46 | 161 |
| Msa0153980 | MtrunA17_Chr1g0188391 | 30.523 | 344 | 183 | 8 | 38 | 354 | 33 | 347 | 5.23e-43 | 153 |
| Msa0153980 | MtrunA17_Chr5g0432251 | 28.150 | 373 | 240 | 11 | 10 | 369 | 1 | 358 | 1.27e-41 | 149 |
| Msa0153980 | MtrunA17_Chr4g0040621 | 30.792 | 341 | 217 | 6 | 23 | 355 | 27 | 356 | 3.99e-41 | 148 |
| Msa0153980 | MtrunA17_Chr4g0046361 | 30.994 | 342 | 212 | 9 | 38 | 369 | 33 | 360 | 4.46e-41 | 148 |
| Msa0153980 | MtrunA17_Chr7g0219161 | 31.488 | 289 | 189 | 4 | 70 | 355 | 62 | 344 | 5.05e-41 | 147 |
| Msa0153980 | MtrunA17_Chr5g0432301 | 29.155 | 367 | 238 | 10 | 13 | 369 | 5 | 359 | 2.51e-40 | 146 |
| Msa0153980 | MtrunA17_Chr1g0170941 | 81.579 | 76 | 14 | 0 | 194 | 269 | 1 | 76 | 3.00e-40 | 137 |
| Msa0153980 | MtrunA17_Chr7g0223231 | 27.920 | 351 | 211 | 6 | 18 | 354 | 14 | 336 | 1.07e-39 | 144 |
| Msa0153980 | MtrunA17_Chr5g0432241 | 29.570 | 372 | 232 | 10 | 14 | 369 | 2 | 359 | 1.12e-39 | 144 |
| Msa0153980 | MtrunA17_Chr4g0014561 | 30.836 | 347 | 224 | 8 | 30 | 369 | 25 | 362 | 1.42e-39 | 144 |
| Msa0153980 | MtrunA17_Chr4g0046531 | 30.887 | 327 | 205 | 6 | 35 | 354 | 30 | 342 | 3.43e-39 | 148 |
| Msa0153980 | MtrunA17_Chr4g0046531 | 30.211 | 331 | 216 | 6 | 28 | 354 | 385 | 704 | 6.70e-38 | 144 |
| Msa0153980 | MtrunA17_Chr7g0219141 | 29.464 | 336 | 221 | 8 | 38 | 369 | 33 | 356 | 3.59e-39 | 142 |
| Msa0153980 | MtrunA17_Chr7g0223241 | 28.612 | 353 | 210 | 7 | 30 | 368 | 24 | 348 | 1.97e-38 | 140 |
| Msa0153980 | MtrunA17_Chr4g0014681 | 30.259 | 347 | 226 | 8 | 30 | 369 | 25 | 362 | 3.03e-38 | 140 |
| Msa0153980 | MtrunA17_Chr4g0014641 | 30.678 | 339 | 219 | 9 | 38 | 369 | 33 | 362 | 5.19e-38 | 139 |
| Msa0153980 | MtrunA17_Chr5g0432211 | 36.967 | 211 | 128 | 3 | 150 | 355 | 122 | 332 | 1.27e-37 | 138 |
| Msa0153980 | MtrunA17_Chr5g0432261 | 35.874 | 223 | 127 | 4 | 150 | 369 | 117 | 326 | 2.30e-37 | 137 |
| Msa0153980 | MtrunA17_Chr1g0188371 | 27.168 | 346 | 195 | 7 | 30 | 348 | 25 | 340 | 1.60e-36 | 136 |
| Msa0153980 | MtrunA17_Chr4g0046341 | 35.833 | 240 | 145 | 5 | 136 | 369 | 127 | 363 | 1.67e-35 | 133 |
| Msa0153980 | MtrunA17_Chr8g0367401 | 50.000 | 110 | 55 | 0 | 163 | 272 | 2 | 111 | 3.53e-35 | 125 |
| Msa0153980 | MtrunA17_Chr1g0170951 | 76.712 | 73 | 17 | 0 | 280 | 352 | 17 | 89 | 4.75e-35 | 124 |
| Msa0153980 | MtrunA17_Chr4g0014661 | 30.091 | 329 | 212 | 7 | 30 | 352 | 25 | 341 | 5.81e-29 | 115 |
| Msa0153980 | MtrunA17_Chr4g0014591 | 29.588 | 267 | 173 | 6 | 29 | 292 | 24 | 278 | 2.06e-25 | 105 |
| Msa0153980 | MtrunA17_Chr8g0367461 | 42.105 | 114 | 63 | 2 | 258 | 370 | 1 | 112 | 3.28e-24 | 95.9 |
| Msa0153980 | MtrunA17_Chr7g0219171 | 37.313 | 134 | 78 | 3 | 239 | 369 | 117 | 247 | 3.72e-23 | 97.1 |
| Msa0153980 | MtrunA17_Chr8g0367421 | 42.727 | 110 | 46 | 1 | 163 | 272 | 2 | 94 | 5.02e-23 | 93.2 |
| Msa0153980 | MtrunA17_Chr4g0014601 | 29.032 | 248 | 160 | 7 | 30 | 274 | 25 | 259 | 6.11e-20 | 88.6 |
| Msa0153980 | MtrunA17_Chr8g0367391 | 43.564 | 101 | 54 | 2 | 271 | 370 | 36 | 134 | 6.22e-18 | 79.3 |
| Msa0153980 | MtrunA17_Chr8g0367411 | 32.540 | 126 | 80 | 2 | 14 | 137 | 3 | 125 | 3.61e-17 | 77.8 |
| Msa0153980 | MtrunA17_Chr8g0367481 | 35.294 | 119 | 72 | 2 | 19 | 135 | 29 | 144 | 4.40e-16 | 75.1 |
| Msa0153980 | MtrunA17_Chr8g0367471 | 48.333 | 60 | 31 | 0 | 194 | 253 | 9 | 68 | 3.32e-15 | 70.9 |
| Msa0153980 | MtrunA17_Chr6g0476581 | 46.154 | 91 | 41 | 2 | 3 | 90 | 5 | 90 | 9.67e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0153980 | AT5G54160.1 | 45.000 | 340 | 178 | 4 | 19 | 356 | 17 | 349 | 9.19e-103 | 308 |
| Msa0153980 | AT1G77520.1 | 40.052 | 387 | 206 | 12 | 3 | 370 | 2 | 381 | 2.08e-87 | 269 |
| Msa0153980 | AT1G51990.2 | 39.466 | 337 | 192 | 6 | 19 | 349 | 13 | 343 | 3.45e-80 | 250 |
| Msa0153980 | AT1G51990.1 | 39.466 | 337 | 192 | 6 | 19 | 349 | 13 | 343 | 6.89e-80 | 249 |
| Msa0153980 | AT1G33030.1 | 38.352 | 352 | 200 | 9 | 25 | 370 | 10 | 350 | 5.72e-76 | 239 |
| Msa0153980 | AT1G63140.2 | 39.344 | 366 | 197 | 11 | 19 | 370 | 27 | 381 | 8.90e-74 | 234 |
| Msa0153980 | AT1G63140.4 | 39.344 | 366 | 197 | 11 | 19 | 370 | 47 | 401 | 9.61e-74 | 234 |
| Msa0153980 | AT1G77530.1 | 39.892 | 371 | 204 | 9 | 12 | 370 | 18 | 381 | 3.91e-72 | 230 |
| Msa0153980 | AT1G21130.1 | 38.889 | 378 | 210 | 12 | 1 | 370 | 9 | 373 | 5.52e-67 | 216 |
| Msa0153980 | AT1G21100.1 | 39.326 | 356 | 199 | 11 | 23 | 370 | 27 | 373 | 1.72e-65 | 212 |
| Msa0153980 | AT1G21110.1 | 39.326 | 356 | 199 | 11 | 23 | 370 | 27 | 373 | 3.79e-65 | 211 |
| Msa0153980 | AT1G76790.1 | 41.210 | 347 | 183 | 12 | 23 | 357 | 17 | 354 | 6.53e-65 | 211 |
| Msa0153980 | AT1G21120.1 | 39.045 | 356 | 200 | 11 | 23 | 370 | 27 | 373 | 1.04e-63 | 207 |
| Msa0153980 | AT1G21120.2 | 39.045 | 356 | 200 | 11 | 23 | 370 | 75 | 421 | 8.15e-63 | 207 |
| Msa0153980 | AT5G53810.1 | 37.176 | 347 | 200 | 10 | 35 | 370 | 39 | 378 | 9.84e-61 | 200 |
| Msa0153980 | AT3G53140.1 | 35.342 | 365 | 214 | 12 | 16 | 370 | 7 | 359 | 1.71e-60 | 199 |
| Msa0153980 | AT5G37170.1 | 34.417 | 369 | 182 | 12 | 11 | 370 | 17 | 334 | 1.25e-56 | 188 |
| Msa0153980 | AT5G37170.2 | 43.500 | 200 | 108 | 4 | 174 | 370 | 37 | 234 | 1.60e-52 | 174 |
| Msa0153980 | AT1G62900.1 | 42.157 | 204 | 114 | 3 | 169 | 370 | 4 | 205 | 9.82e-52 | 171 |
| Msa0153980 | AT1G33030.3 | 37.647 | 255 | 145 | 7 | 25 | 274 | 10 | 255 | 9.70e-49 | 166 |
| Msa0153980 | AT5G37170.3 | 43.085 | 188 | 102 | 4 | 186 | 370 | 1 | 186 | 4.81e-48 | 161 |
| Msa0153980 | AT1G63140.1 | 39.474 | 266 | 140 | 8 | 19 | 272 | 47 | 303 | 8.34e-48 | 164 |
| Msa0153980 | AT1G33030.2 | 37.549 | 253 | 144 | 7 | 25 | 272 | 10 | 253 | 9.23e-48 | 163 |
| Msa0153980 | AT4G35150.1 | 35.096 | 208 | 125 | 4 | 157 | 354 | 103 | 310 | 6.63e-42 | 149 |
| Msa0153980 | AT1G21130.2 | 38.489 | 278 | 154 | 9 | 1 | 272 | 9 | 275 | 7.46e-41 | 146 |
| Msa0153980 | AT4G35160.1 | 36.585 | 205 | 120 | 4 | 160 | 354 | 163 | 367 | 5.81e-37 | 137 |
| Msa0153980 | AT1G63140.3 | 37.705 | 244 | 131 | 8 | 19 | 250 | 47 | 281 | 8.80e-36 | 132 |
| Msa0153980 | AT1G77530.2 | 38.554 | 249 | 138 | 7 | 12 | 250 | 18 | 261 | 1.57e-35 | 131 |
Find 64 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCAATATCCTTCAATTA+AGG | 0.171873 | 1_4:-18110126 | Msa0153980:CDS |
| ACTGCAAGCCATATGAAATT+TGG | 0.231520 | 1_4:+18109534 | None:intergenic |
| ACAATCACTTTCCCATGTTT+TGG | 0.276979 | 1_4:+18109703 | None:intergenic |
| CTGGACCATTAGAAATTAAA+AGG | 0.282224 | 1_4:-18110235 | Msa0153980:CDS |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1_4:-18113965 | Msa0153980:CDS |
| TGGACCAACCTTTAGTAAAA+TGG | 0.289172 | 1_4:+18109884 | None:intergenic |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.291900 | 1_4:+18114105 | None:intergenic |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1_4:+18114117 | None:intergenic |
| ACATGGGAAAGTGATTGTTT+TGG | 0.324846 | 1_4:-18109698 | Msa0153980:CDS |
| TTCTTTCTTACCATCTTCAT+TGG | 0.332460 | 1_4:+18114029 | None:intergenic |
| AGGATCCTCAAGTTATATAA+AGG | 0.334038 | 1_4:-18110215 | Msa0153980:CDS |
| TAGACATATTGCTAGGGTTT+GGG | 0.337888 | 1_4:+18109656 | None:intergenic |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1_4:-18113964 | Msa0153980:CDS |
| AAGTTACACCTTTCAAAGTT+TGG | 0.344197 | 1_4:+18109374 | None:intergenic |
| AACCAAGCAATGGGCCAATC+TGG | 0.360100 | 1_4:-18110254 | Msa0153980:CDS |
| ATTCAATTCTTTATTTGTCT+TGG | 0.365557 | 1_4:+18110286 | None:intergenic |
| TGATGCAAAGGATGCAATAT+TGG | 0.368078 | 1_4:-18110366 | Msa0153980:CDS |
| ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1_4:+18114228 | None:intergenic |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1_4:-18114118 | Msa0153980:CDS |
| TGCAGCTTGTATGTCATAAC+TGG | 0.386144 | 1_4:-18109774 | Msa0153980:intron |
| AAACACTGTTACATCCTCTA+TGG | 0.386200 | 1_4:+18113923 | None:intergenic |
| TTGCTAGGGTTTGGGACCTC+TGG | 0.390764 | 1_4:+18109664 | None:intergenic |
| TAATTTCAAAGCAAAGAATA+AGG | 0.395526 | 1_4:-18109407 | Msa0153980:three_prime_UTR |
| TCTCAATATCCTTCAATTAA+GGG | 0.412926 | 1_4:-18110125 | Msa0153980:CDS |
| AAATTAACTCCCTTAATTGA+AGG | 0.418849 | 1_4:+18110116 | None:intergenic |
| TTAGACATATTGCTAGGGTT+TGG | 0.423715 | 1_4:+18109655 | None:intergenic |
| GTCTATGCTCTCTCATCAAT+TGG | 0.426519 | 1_4:-18114003 | Msa0153980:CDS |
| ATAGAGGATGTAACAGTGTT+TGG | 0.430033 | 1_4:-18113921 | Msa0153980:intron |
| AACTTCACACATTCTTCATC+TGG | 0.433585 | 1_4:+18109751 | None:intergenic |
| TAATTTCTAATGGTCCAGAT+TGG | 0.453045 | 1_4:+18110240 | None:intergenic |
| AGTCATGTCTCAGCCATGTC+TGG | 0.454177 | 1_4:-18109514 | Msa0153980:CDS |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1_4:-18113976 | Msa0153980:CDS |
| ATCTCAACATTGGTTGATGT+TGG | 0.463245 | 1_4:-18110182 | Msa0153980:CDS |
| CTTGTAGGGCTTGAGCATGT+TGG | 0.467262 | 1_4:-18109942 | Msa0153980:intron |
| GTCCAGATTGGCCCATTGCT+TGG | 0.468407 | 1_4:+18110252 | None:intergenic |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1_4:-18113986 | Msa0153980:CDS |
| GCATGCTTAGACATATTGCT+AGG | 0.482902 | 1_4:+18109649 | None:intergenic |
| CTATGGATTAATGTTGAAAG+TGG | 0.496391 | 1_4:+18113940 | None:intergenic |
| CACAAAGCTTTACCAAAACA+TGG | 0.501741 | 1_4:-18109715 | Msa0153980:CDS |
| ACCATCTTCATTGGTACGAA+TGG | 0.502294 | 1_4:+18114038 | None:intergenic |
| CAAAACCTTTATATAACTTG+AGG | 0.507417 | 1_4:+18110210 | None:intergenic |
| GTAGGGCTTGAGCATGTTGG+AGG | 0.508594 | 1_4:-18109939 | Msa0153980:intron |
| AATTGTGTCCAAACTTTGAA+AGG | 0.512180 | 1_4:-18109382 | Msa0153980:three_prime_UTR |
| GAGAGCTTATGTAAGAGAGC+TGG | 0.513125 | 1_4:-18109562 | Msa0153980:CDS |
| CAAGATGCACCTACTCATCC+AGG | 0.521406 | 1_4:-18110074 | Msa0153980:intron |
| AGTAAAATGGCATCACCACT+TGG | 0.524337 | 1_4:+18109897 | None:intergenic |
| GTTGATGTTGGAGGTGGAGT+AGG | 0.524896 | 1_4:-18110170 | Msa0153980:CDS |
| CTCAGCCATGTCTGGAGTGA+TGG | 0.528544 | 1_4:-18109506 | Msa0153980:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1_4:+18114106 | None:intergenic |
| TCCATTCGTACCAATGAAGA+TGG | 0.540221 | 1_4:-18114039 | Msa0153980:CDS |
| CTTTCAACATTAATCCATAG+AGG | 0.541916 | 1_4:-18113937 | Msa0153980:CDS |
| CATGCTTAGACATATTGCTA+GGG | 0.550831 | 1_4:+18109650 | None:intergenic |
| TGAACGCATGTTGACTGTGT+TGG | 0.560083 | 1_4:-18114085 | Msa0153980:CDS |
| AAATAATCTTCCTACTAATG+AGG | 0.564642 | 1_4:-18114310 | Msa0153980:CDS |
| ACATTGGTTGATGTTGGAGG+TGG | 0.572639 | 1_4:-18110176 | Msa0153980:CDS |
| TCAACATTGGTTGATGTTGG+AGG | 0.582503 | 1_4:-18110179 | Msa0153980:CDS |
| CACTTGCAGGGGTGATGCAA+AGG | 0.585977 | 1_4:-18110378 | Msa0153980:intron |
| AAACTCCATCACTCCAGACA+TGG | 0.612342 | 1_4:+18109501 | None:intergenic |
| GGTGCATCTTGAACAGCTTG+TGG | 0.613069 | 1_4:+18110086 | None:intergenic |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1_4:-18114110 | Msa0153980:CDS |
| TTTGGATTATATAATTCCAG+AGG | 0.634533 | 1_4:-18109680 | Msa0153980:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1_4:-18113973 | Msa0153980:CDS |
| ACAAAGCTTTACCAAAACAT+GGG | 0.663342 | 1_4:-18109714 | Msa0153980:CDS |
| ATGTTTGAAAGTGTTCCAAG+TGG | 0.739305 | 1_4:-18109912 | Msa0153980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTCTAATTTTTTTTTTTTTT+AGG | + | chr1_4:18109806-18109825 | None:intergenic | 10.0% |
| !!! | TTCAAACTTTTAAATATTTA+GGG | - | chr1_4:18111041-18111060 | Msa0153980:intron | 10.0% |
| !!! | GGTTTTAATAAAAATAATAA+GGG | + | chr1_4:18111274-18111293 | None:intergenic | 10.0% |
| !! | CAGAAAAAAAAAAAAAAAAA+AGG | + | chr1_4:18111455-18111474 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTTC+TGG | - | chr1_4:18111453-18111472 | Msa0153980:intron | 10.0% |
| !!! | AAATGAAATGATTTTTTTTT+AGG | - | chr1_4:18111671-18111690 | Msa0153980:intron | 10.0% |
| !!! | TATTAAAACATTTTTTTTGA+GGG | - | chr1_4:18112522-18112541 | Msa0153980:intron | 10.0% |
| !! | TATCTATCATATAAAAAATA+TGG | - | chr1_4:18112632-18112651 | Msa0153980:intron | 10.0% |
| !! | AATCATATACATATATATTA+CGG | - | chr1_4:18112865-18112884 | Msa0153980:intron | 10.0% |
| !! | AATAGTTAATTTATAGATTT+AGG | - | chr1_4:18113068-18113087 | Msa0153980:intron | 10.0% |
| !! | TGATTTAATGATAAAAAGAT+AGG | + | chr1_4:18110520-18110539 | None:intergenic | 15.0% |
| !! | AAAAATATTAGCATAATTCA+AGG | + | chr1_4:18110660-18110679 | None:intergenic | 15.0% |
| !!! | AGTTTATCAAATAAAGTTTT+TGG | - | chr1_4:18110838-18110857 | Msa0153980:intron | 15.0% |
| !!! | GTTCAAACTTTTAAATATTT+AGG | - | chr1_4:18111040-18111059 | Msa0153980:intron | 15.0% |
| !!! | GGGTTTTAATAAAAATAATA+AGG | + | chr1_4:18111275-18111294 | None:intergenic | 15.0% |
| !! | TCATATAAAATTCAGTTATA+AGG | + | chr1_4:18111416-18111435 | None:intergenic | 15.0% |
| !! | TAATAATGTAAACATTTGTT+TGG | - | chr1_4:18112238-18112257 | Msa0153980:intron | 15.0% |
| !! | AATAATGTAAACATTTGTTT+GGG | - | chr1_4:18112239-18112258 | Msa0153980:intron | 15.0% |
| !!! | CTATTAAAACATTTTTTTTG+AGG | - | chr1_4:18112521-18112540 | Msa0153980:intron | 15.0% |
| !!! | ATTAAAACATTTTTTTTGAG+GGG | - | chr1_4:18112523-18112542 | Msa0153980:intron | 15.0% |
| !! | ATCATATACATATATATTAC+GGG | - | chr1_4:18112866-18112885 | Msa0153980:intron | 15.0% |
| !! | TAAATATAGACATATTTGTA+TGG | - | chr1_4:18113211-18113230 | Msa0153980:intron | 15.0% |
| !!! | TTTATGGTACTTATTATTTT+TGG | + | chr1_4:18113656-18113675 | None:intergenic | 15.0% |
| !! | TACAAGCAAAATAAAATTTA+TGG | + | chr1_4:18113672-18113691 | None:intergenic | 15.0% |
| !!! | ATAAATTTTATTTTGCTTGT+AGG | - | chr1_4:18113671-18113690 | Msa0153980:intron | 15.0% |
| !!! | TAAATTTTATTTTGCTTGTA+GGG | - | chr1_4:18113672-18113691 | Msa0153980:intron | 15.0% |
| !!! | TTTAAATTTTGTTTATCATG+TGG | + | chr1_4:18113767-18113786 | None:intergenic | 15.0% |
| !! | TAAACAAAATTTAAACAGTT+TGG | - | chr1_4:18113772-18113791 | Msa0153980:intron | 15.0% |
| !!! | CATTTTTGCTAACTATTTTA+TGG | + | chr1_4:18109281-18109300 | None:intergenic | 20.0% |
| !!! | AAGATTATTTTGCTTAGAAT+TGG | + | chr1_4:18109308-18109327 | None:intergenic | 20.0% |
| !!! | TGTTTTGTTTTACAAGTTAA+AGG | - | chr1_4:18110159-18110178 | Msa0153980:CDS | 20.0% |
| !! | TTAAAAAAAGAGAAAGTCTT+AGG | + | chr1_4:18110361-18110380 | None:intergenic | 20.0% |
| !!! | GATTTTAGGTTTTCTTTTTT+TGG | + | chr1_4:18110415-18110434 | None:intergenic | 20.0% |
| !!! | TATATCTACGTTATTTCTTT+AGG | - | chr1_4:18110460-18110479 | Msa0153980:intron | 20.0% |
| !! | AAATCAACACATAATAAAAG+AGG | - | chr1_4:18110534-18110553 | Msa0153980:intron | 20.0% |
| !!! | ATGCTAATATTTTTGAAGAT+AGG | - | chr1_4:18110666-18110685 | Msa0153980:intron | 20.0% |
| !!! | TTTGAATCTTAAGTTTTCAA+TGG | - | chr1_4:18110719-18110738 | Msa0153980:intron | 20.0% |
| !!! | TATTTAAGATTAGAGTTGTA+TGG | + | chr1_4:18110810-18110829 | None:intergenic | 20.0% |
| !!! | TTCAAATTTAACTTTCTAAG+TGG | + | chr1_4:18110910-18110929 | None:intergenic | 20.0% |
| !! | AAAAATAATAAGGGTAAAAC+TGG | + | chr1_4:18111265-18111284 | None:intergenic | 20.0% |
| !! | GGTCATAAATAAATCATAAA+GGG | + | chr1_4:18111305-18111324 | None:intergenic | 20.0% |
| !! | TGGTCATAAATAAATCATAA+AGG | + | chr1_4:18111306-18111325 | None:intergenic | 20.0% |
| !! | ATGAAACTAAATAAATCGTA+CGG | + | chr1_4:18111346-18111365 | None:intergenic | 20.0% |
| !!! | GAATTTTATATGAATGTATG+TGG | - | chr1_4:18111423-18111442 | Msa0153980:intron | 20.0% |
| !! | GTTGAAACAATTAATATCTA+TGG | + | chr1_4:18111996-18112015 | None:intergenic | 20.0% |
| !! | TAAAATTCCAAAATCCAAAA+TGG | - | chr1_4:18112204-18112223 | Msa0153980:intron | 20.0% |
| !! | ATAATGTAAACATTTGTTTG+GGG | - | chr1_4:18112240-18112259 | Msa0153980:intron | 20.0% |
| !!! | TCTGAAAAATACTTTTATAG+AGG | - | chr1_4:18112390-18112409 | Msa0153980:intron | 20.0% |
| !!! | CTGAAAAATACTTTTATAGA+GGG | - | chr1_4:18112391-18112410 | Msa0153980:intron | 20.0% |
| !!! | GAAAAAAAGTTTTACTAAGT+CGG | - | chr1_4:18112436-18112455 | Msa0153980:intron | 20.0% |
| !! | TCTTTGACGAAAAATATTAA+TGG | + | chr1_4:18112682-18112701 | None:intergenic | 20.0% |
| !!! | AAATTATTTTTTGTGTGTGA+TGG | + | chr1_4:18112899-18112918 | None:intergenic | 20.0% |
| !! | GTATATACTTTATATGAACA+CGG | - | chr1_4:18112933-18112952 | Msa0153980:intron | 20.0% |
| !! | AATGGGAATATAAAAATGAT+TGG | - | chr1_4:18113000-18113019 | Msa0153980:intron | 20.0% |
| !! | ATGGGAATATAAAAATGATT+GGG | - | chr1_4:18113001-18113020 | Msa0153980:intron | 20.0% |
| !! | CAAATATGTCTATATTTACT+AGG | + | chr1_4:18113209-18113228 | None:intergenic | 20.0% |
| !!! | AATCTTTTTCAAAGTATCAA+TGG | - | chr1_4:18113299-18113318 | Msa0153980:intron | 20.0% |
| !!! | ATCTTTTTCAAAGTATCAAT+GGG | - | chr1_4:18113300-18113319 | Msa0153980:intron | 20.0% |
| !!! | ATTCAATTCTTTATTTGTCT+TGG | + | chr1_4:18113345-18113364 | None:intergenic | 20.0% |
| !!! | AAGTTATATAAAGGTTTTGA+AGG | - | chr1_4:18113422-18113441 | Msa0153980:intron | 20.0% |
| !!! | ATTGATTGATATATTTTACC+TGG | + | chr1_4:18113575-18113594 | None:intergenic | 20.0% |
| !!! | TATTTTTGGCTTAAAGTAAA+GGG | + | chr1_4:18113642-18113661 | None:intergenic | 20.0% |
| !!! | TTATTTTTGGCTTAAAGTAA+AGG | + | chr1_4:18113643-18113662 | None:intergenic | 20.0% |
| !! | TAATTTCAAAGCAAAGAATA+AGG | - | chr1_4:18114221-18114240 | Msa0153980:CDS | 20.0% |
| ! | AAATAATCTTCCTACTAATG+AGG | - | chr1_4:18109318-18109337 | Msa0153980:three_prime_UTR | 25.0% |
| !!! | CATCATTTTTGTCTTTTATG+AGG | + | chr1_4:18110128-18110147 | None:intergenic | 25.0% |
| ! | AGTAGATTTGATGTATTGTT+TGG | + | chr1_4:18110242-18110261 | None:intergenic | 25.0% |
| !!! | GCAAGTGTTTTTAAGATTTT+AGG | + | chr1_4:18110429-18110448 | None:intergenic | 25.0% |
| ! | ATGATAAAAAGATAGGACTT+AGG | + | chr1_4:18110513-18110532 | None:intergenic | 25.0% |
| !!! | TGCTGATTTGTTAAATTGTT+AGG | + | chr1_4:18110768-18110787 | None:intergenic | 25.0% |
| ! | TTGTCAAAAGAAGTTAACAA+GGG | + | chr1_4:18110879-18110898 | None:intergenic | 25.0% |
| ! | TATTTAAAAGTTTGAACACG+TGG | + | chr1_4:18111037-18111056 | None:intergenic | 25.0% |
| !! | TTAAATATTTAGGGTCTGTT+TGG | - | chr1_4:18111050-18111069 | Msa0153980:intron | 25.0% |
| !! | AAATCATAAAGGGTATATGT+GGG | + | chr1_4:18111295-18111314 | None:intergenic | 25.0% |
| !! | TAAATCATAAAGGGTATATG+TGG | + | chr1_4:18111296-18111315 | None:intergenic | 25.0% |
| ! | TGAAACTAAATAAATCGTAC+GGG | + | chr1_4:18111345-18111364 | None:intergenic | 25.0% |
| ! | AAAGAATGTTCATCTACTTT+AGG | - | chr1_4:18111603-18111622 | Msa0153980:intron | 25.0% |
| ! | GAAACAATTAATATCTATGG+TGG | + | chr1_4:18111993-18112012 | None:intergenic | 25.0% |
| ! | TTCATTCTCATATAATGCAT+CGG | + | chr1_4:18112119-18112138 | None:intergenic | 25.0% |
| !! | TAAATCACCATTTTGGATTT+TGG | + | chr1_4:18112214-18112233 | None:intergenic | 25.0% |
| !! | TTATGAGTAAATCACCATTT+TGG | + | chr1_4:18112221-18112240 | None:intergenic | 25.0% |
| !!! | TATGGTTTTAAGATAGATGA+TGG | - | chr1_4:18112650-18112669 | Msa0153980:intron | 25.0% |
| ! | CTATTGAAATTCAACAAATC+CGG | - | chr1_4:18112714-18112733 | Msa0153980:intron | 25.0% |
| ! | AAATTTGGATTCCATATTGT+TGG | + | chr1_4:18112740-18112759 | None:intergenic | 25.0% |
| ! | TTTGGACTATCACTTAAATT+TGG | + | chr1_4:18112755-18112774 | None:intergenic | 25.0% |
| ! | AAGTGATAGTCCAAATATTA+CGG | - | chr1_4:18112760-18112779 | Msa0153980:intron | 25.0% |
| ! | AATAAAATATTGGTGTGTGA+TGG | + | chr1_4:18112794-18112813 | None:intergenic | 25.0% |
| ! | TGGGAATATAAAAATGATTG+GGG | - | chr1_4:18113002-18113021 | Msa0153980:intron | 25.0% |
| ! | AGCATTATAAGAAACTTCTA+CGG | + | chr1_4:18113130-18113149 | None:intergenic | 25.0% |
| !! | TGAAAAAGATTTTTGACATC+AGG | + | chr1_4:18113290-18113309 | None:intergenic | 25.0% |
| !!! | AGGATCCTTTTAATTTCTAA+TGG | + | chr1_4:18113401-18113420 | None:intergenic | 25.0% |
| ! | CAAAACCTTTATATAACTTG+AGG | + | chr1_4:18113421-18113440 | None:intergenic | 25.0% |
| ! | TCTCAATATCCTTCAATTAA+GGG | - | chr1_4:18113503-18113522 | Msa0153980:intron | 25.0% |
| ! | AAATTAACTCCCTTAATTGA+AGG | + | chr1_4:18113515-18113534 | None:intergenic | 25.0% |
| ! | TTTGGATTATATAATTCCAG+AGG | - | chr1_4:18113948-18113967 | Msa0153980:CDS | 25.0% |
| !! | TGGATTTTCCAAATTTCATA+TGG | - | chr1_4:18114086-18114105 | Msa0153980:CDS | 25.0% |
| !! | ACTTTTTCTACCTCATTAGT+AGG | + | chr1_4:18109331-18109350 | None:intergenic | 30.0% |
| !!! | CGTTGTTACTATGTTTTAGT+AGG | - | chr1_4:18109371-18109390 | Msa0153980:three_prime_UTR | 30.0% |
| TTCTTTCTTACCATCTTCAT+TGG | + | chr1_4:18109602-18109621 | None:intergenic | 30.0% | |
| AATTGGTCAATACTTTGCAT+TGG | - | chr1_4:18109642-18109661 | Msa0153980:CDS | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | - | chr1_4:18109652-18109671 | Msa0153980:CDS | 30.0% | |
| ! | CTATGGATTAATGTTGAAAG+TGG | + | chr1_4:18109691-18109710 | None:intergenic | 30.0% |
| CTTTCAACATTAATCCATAG+AGG | - | chr1_4:18109691-18109710 | Msa0153980:CDS | 30.0% | |
| ! | TGTTTGGAACAATAGAGATA+GGG | - | chr1_4:18109925-18109944 | Msa0153980:CDS | 30.0% |
| AGTAAAGTGAGAGAGAAATA+GGG | - | chr1_4:18109955-18109974 | Msa0153980:intron | 30.0% | |
| !!! | CAATGGAGAGATTGTTTTTT+AGG | + | chr1_4:18110054-18110073 | None:intergenic | 30.0% |
| GCTTAAAATGGAAAACCATA+GGG | + | chr1_4:18110106-18110125 | None:intergenic | 30.0% | |
| ! | GTCTTTTATGAGGCTTAAAA+TGG | + | chr1_4:18110118-18110137 | None:intergenic | 30.0% |
| GAGTATGAGAAGAAAGAAAA+AGG | + | chr1_4:18110275-18110294 | None:intergenic | 30.0% | |
| !! | ACGTTATTTCTTTAGGAGTT+AGG | - | chr1_4:18110467-18110486 | Msa0153980:intron | 30.0% |
| !! | CGTTATTTCTTTAGGAGTTA+GGG | - | chr1_4:18110468-18110487 | Msa0153980:intron | 30.0% |
| !! | GGTACCTCTAAAATTATTGA+GGG | + | chr1_4:18110617-18110636 | None:intergenic | 30.0% |
| !! | TGGTACCTCTAAAATTATTG+AGG | + | chr1_4:18110618-18110637 | None:intergenic | 30.0% |
| TAAGATTAGAGTTGTATGGA+GGG | + | chr1_4:18110806-18110825 | None:intergenic | 30.0% | |
| TTAAGATTAGAGTTGTATGG+AGG | + | chr1_4:18110807-18110826 | None:intergenic | 30.0% | |
| GTTGTCAAAAGAAGTTAACA+AGG | + | chr1_4:18110880-18110899 | None:intergenic | 30.0% | |
| ! | CTATAAGCTATAAGCTCTTT+TGG | + | chr1_4:18111084-18111103 | None:intergenic | 30.0% |
| TTGACAAAATAAGCTCTGTT+TGG | - | chr1_4:18111117-18111136 | Msa0153980:intron | 30.0% | |
| TCTAGTTGCTTACATTAGTA+TGG | - | chr1_4:18111483-18111502 | Msa0153980:intron | 30.0% | |
| ! | AGAGTGTTTGGTAAAATTAG+CGG | + | chr1_4:18111871-18111890 | None:intergenic | 30.0% |
| ! | GATAAGCTAATTAGAGTGTT+TGG | + | chr1_4:18111883-18111902 | None:intergenic | 30.0% |
| TTAATATCTATGGTGGTTGA+TGG | + | chr1_4:18111986-18112005 | None:intergenic | 30.0% | |
| !! | ATTTGTTTGGGGCATATTTT+CGG | - | chr1_4:18112251-18112270 | Msa0153980:intron | 30.0% |
| AAAAAGACCTCATATATGTC+TGG | + | chr1_4:18112298-18112317 | None:intergenic | 30.0% | |
| !!! | GTTTTTAATTTGTGCCATGA+GGG | - | chr1_4:18112599-18112618 | Msa0153980:intron | 30.0% |
| AGTGATAGTCCAAATATTAC+GGG | - | chr1_4:18112761-18112780 | Msa0153980:intron | 30.0% | |
| TATCTTAAACTGACCATTCA+TGG | - | chr1_4:18112973-18112992 | Msa0153980:intron | 30.0% | |
| ATCTTAAACTGACCATTCAT+GGG | - | chr1_4:18112974-18112993 | Msa0153980:intron | 30.0% | |
| GGGAATATAAAAATGATTGG+GGG | - | chr1_4:18113003-18113022 | Msa0153980:intron | 30.0% | |
| AAAAGATTATATGCACTTGC+AGG | - | chr1_4:18113237-18113256 | Msa0153980:intron | 30.0% | |
| AAAGATTATATGCACTTGCA+GGG | - | chr1_4:18113238-18113257 | Msa0153980:intron | 30.0% | |
| ! | TGATATTTTCAACCAAGCAA+TGG | - | chr1_4:18113364-18113383 | Msa0153980:intron | 30.0% |
| ! | GATATTTTCAACCAAGCAAT+GGG | - | chr1_4:18113365-18113384 | Msa0153980:intron | 30.0% |
| TAATTTCTAATGGTCCAGAT+TGG | + | chr1_4:18113391-18113410 | None:intergenic | 30.0% | |
| CTGGACCATTAGAAATTAAA+AGG | - | chr1_4:18113393-18113412 | Msa0153980:intron | 30.0% | |
| AGGATCCTCAAGTTATATAA+AGG | - | chr1_4:18113413-18113432 | Msa0153980:intron | 30.0% | |
| !! | TTTTGAAGGAATCTCAACAT+TGG | - | chr1_4:18113436-18113455 | Msa0153980:intron | 30.0% |
| ! | TTGAGAGAGAATGAGTTTTA+GGG | + | chr1_4:18113489-18113508 | None:intergenic | 30.0% |
| ! | ATTGAGAGAGAATGAGTTTT+AGG | + | chr1_4:18113490-18113509 | None:intergenic | 30.0% |
| CTCTCAATATCCTTCAATTA+AGG | - | chr1_4:18113502-18113521 | Msa0153980:intron | 30.0% | |
| ! | TATATTTTACCTGGATGAGT+AGG | + | chr1_4:18113566-18113585 | None:intergenic | 30.0% |
| ACAAAGCTTTACCAAAACAT+GGG | - | chr1_4:18113914-18113933 | Msa0153980:intron | 30.0% | |
| !!! | CTCATGTTTTTAGTAACAAC+TGG | - | chr1_4:18114018-18114037 | Msa0153980:CDS | 30.0% |
| !!! | GTTTTTAGTAACAACTGGAA+AGG | - | chr1_4:18114023-18114042 | Msa0153980:CDS | 30.0% |
| AATTGTGTCCAAACTTTGAA+AGG | - | chr1_4:18114246-18114265 | Msa0153980:CDS | 30.0% | |
| AAGTTACACCTTTCAAAGTT+TGG | + | chr1_4:18114257-18114276 | None:intergenic | 30.0% | |
| ATAGCAGCATTTAGTATTGC+AGG | + | chr1_4:18109403-18109422 | None:intergenic | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | - | chr1_4:18109655-18109674 | Msa0153980:CDS | 35.0% | |
| AAACACTGTTACATCCTCTA+TGG | + | chr1_4:18109708-18109727 | None:intergenic | 35.0% | |
| ATAGAGGATGTAACAGTGTT+TGG | - | chr1_4:18109707-18109726 | Msa0153980:CDS | 35.0% | |
| ATTGTTCCAAACACACTGTT+AGG | + | chr1_4:18109918-18109937 | None:intergenic | 35.0% | |
| ! | GTGTTTGGAACAATAGAGAT+AGG | - | chr1_4:18109924-18109943 | Msa0153980:CDS | 35.0% |
| ! | GTTTGGAACAATAGAGATAG+GGG | - | chr1_4:18109926-18109945 | Msa0153980:CDS | 35.0% |
| GAGTAAAGTGAGAGAGAAAT+AGG | - | chr1_4:18109954-18109973 | Msa0153980:intron | 35.0% | |
| GTAAAGTGAGAGAGAAATAG+GGG | - | chr1_4:18109956-18109975 | Msa0153980:intron | 35.0% | |
| GAGAGTAAATCCATCATGTT+TGG | - | chr1_4:18109982-18110001 | Msa0153980:intron | 35.0% | |
| AAGAGAGATACAAGAGAGAA+AGG | - | chr1_4:18110008-18110027 | Msa0153980:intron | 35.0% | |
| !!! | GGAGAGATTGTTTTTTAGGT+GGG | + | chr1_4:18110050-18110069 | None:intergenic | 35.0% |
| !!! | TGGAGAGATTGTTTTTTAGG+TGG | + | chr1_4:18110051-18110070 | None:intergenic | 35.0% |
| GGCTTAAAATGGAAAACCAT+AGG | + | chr1_4:18110107-18110126 | None:intergenic | 35.0% | |
| GAAGTTGAGAAGAGAGAAAT+AGG | + | chr1_4:18110305-18110324 | None:intergenic | 35.0% | |
| GATCACAATCATTGTGTGTT+TGG | + | chr1_4:18110337-18110356 | None:intergenic | 35.0% | |
| ! | CTCTCCCTCAATAATTTTAG+AGG | - | chr1_4:18110610-18110629 | Msa0153980:intron | 35.0% |
| TACCAAGCATTAGACCAAAA+GGG | - | chr1_4:18110633-18110652 | Msa0153980:intron | 35.0% | |
| AAGATTAGAGTTGTATGGAG+GGG | + | chr1_4:18110805-18110824 | None:intergenic | 35.0% | |
| TCAAAAGAAGTTAACAAGGG+AGG | + | chr1_4:18110876-18110895 | None:intergenic | 35.0% | |
| TGCATTAAGCAACAATAGAG+TGG | + | chr1_4:18110978-18110997 | None:intergenic | 35.0% | |
| TAAAAGTTTGAACACGTGGA+AGG | + | chr1_4:18111033-18111052 | None:intergenic | 35.0% | |
| ! | TATTTAGGGTCTGTTTGGTA+AGG | - | chr1_4:18111055-18111074 | Msa0153980:intron | 35.0% |
| ! | TAAGCTATAAGCTCTTTTGG+TGG | + | chr1_4:18111081-18111100 | None:intergenic | 35.0% |
| GCTCTGTTTGGTAAAAATAG+CGG | + | chr1_4:18111945-18111964 | None:intergenic | 35.0% | |
| TGCATGATTTGACACTCATT+TGG | - | chr1_4:18112019-18112038 | Msa0153980:intron | 35.0% | |
| CATTTGGAAAATCCCACATA+TGG | - | chr1_4:18112035-18112054 | Msa0153980:intron | 35.0% | |
| AATCCCACATATGGATGAAT+TGG | - | chr1_4:18112044-18112063 | Msa0153980:intron | 35.0% | |
| ATCCCACATATGGATGAATT+GGG | - | chr1_4:18112045-18112064 | Msa0153980:intron | 35.0% | |
| TATAATGCATCGGAAGTTGA+GGG | + | chr1_4:18112109-18112128 | None:intergenic | 35.0% | |
| ATATAATGCATCGGAAGTTG+AGG | + | chr1_4:18112110-18112129 | None:intergenic | 35.0% | |
| ATCCAAACCAGACATATATG+AGG | - | chr1_4:18112288-18112307 | Msa0153980:intron | 35.0% | |
| !!! | GGTTTTTAATTTGTGCCATG+AGG | - | chr1_4:18112598-18112617 | Msa0153980:intron | 35.0% |
| GGTTATAGTCCCGTAATATT+TGG | + | chr1_4:18112773-18112792 | None:intergenic | 35.0% | |
| TGACCATTCATGGGTAAAAT+GGG | - | chr1_4:18112983-18113002 | Msa0153980:intron | 35.0% | |
| ! | ATTCCCATTTTACCCATGAA+TGG | + | chr1_4:18112989-18113008 | None:intergenic | 35.0% |
| AAGATTATATGCACTTGCAG+GGG | - | chr1_4:18113239-18113258 | Msa0153980:intron | 35.0% | |
| TGATGCAAAGGATGCAATAT+TGG | - | chr1_4:18113262-18113281 | Msa0153980:intron | 35.0% | |
| ! | ATCTCAACATTGGTTGATGT+TGG | - | chr1_4:18113446-18113465 | Msa0153980:intron | 35.0% |
| !! | ATGTTTGAAAGTGTTCCAAG+TGG | - | chr1_4:18113716-18113735 | Msa0153980:intron | 35.0% |
| AACTTCACACATTCTTCATC+TGG | + | chr1_4:18113880-18113899 | None:intergenic | 35.0% | |
| !!! | CATGTTTTGGTAAAGCTTTG+TGG | + | chr1_4:18113915-18113934 | None:intergenic | 35.0% |
| CACAAAGCTTTACCAAAACA+TGG | - | chr1_4:18113913-18113932 | Msa0153980:intron | 35.0% | |
| ! | ACAATCACTTTCCCATGTTT+TGG | + | chr1_4:18113928-18113947 | None:intergenic | 35.0% |
| ! | ACATGGGAAAGTGATTGTTT+TGG | - | chr1_4:18113930-18113949 | Msa0153980:CDS | 35.0% |
| TAGACATATTGCTAGGGTTT+GGG | + | chr1_4:18113975-18113994 | None:intergenic | 35.0% | |
| TTAGACATATTGCTAGGGTT+TGG | + | chr1_4:18113976-18113995 | None:intergenic | 35.0% | |
| CATGCTTAGACATATTGCTA+GGG | + | chr1_4:18113981-18114000 | None:intergenic | 35.0% | |
| ACTGCAAGCCATATGAAATT+TGG | + | chr1_4:18114097-18114116 | None:intergenic | 35.0% | |
| TCCAAATCAACACCCTGAAT+TGG | - | chr1_4:18109510-18109529 | Msa0153980:CDS | 40.0% | |
| TCCATTCGTACCAATGAAGA+TGG | - | chr1_4:18109589-18109608 | Msa0153980:CDS | 40.0% | |
| ACCATCTTCATTGGTACGAA+TGG | + | chr1_4:18109593-18109612 | None:intergenic | 40.0% | |
| GTCTATGCTCTCTCATCAAT+TGG | - | chr1_4:18109625-18109644 | Msa0153980:CDS | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | - | chr1_4:18109664-18109683 | Msa0153980:CDS | 40.0% | |
| GTTGTTCCTAACAGTGTGTT+TGG | - | chr1_4:18109909-18109928 | Msa0153980:CDS | 40.0% | |
| CTCTCTTGTTCCAAACATGA+TGG | + | chr1_4:18109995-18110014 | None:intergenic | 40.0% | |
| CAAGAGAGAAAGGCTAAAAG+TGG | - | chr1_4:18110018-18110037 | Msa0153980:intron | 40.0% | |
| AGAGAAAGGCTAAAAGTGGA+TGG | - | chr1_4:18110022-18110041 | Msa0153980:intron | 40.0% | |
| GAGAAAGGCTAAAAGTGGAT+GGG | - | chr1_4:18110023-18110042 | Msa0153980:intron | 40.0% | |
| ! | TCTTTAGGAGTTAGGGCTAT+AGG | - | chr1_4:18110475-18110494 | Msa0153980:intron | 40.0% |
| ! | CTTTAGGAGTTAGGGCTATA+GGG | - | chr1_4:18110476-18110495 | Msa0153980:intron | 40.0% |
| TTTAGGAGTTAGGGCTATAG+GGG | - | chr1_4:18110477-18110496 | Msa0153980:intron | 40.0% | |
| GTACCAAGCATTAGACCAAA+AGG | - | chr1_4:18110632-18110651 | Msa0153980:intron | 40.0% | |
| ! | GCATAATTCAAGGACCCTTT+TGG | + | chr1_4:18110650-18110669 | None:intergenic | 40.0% |
| CTATAAGCTCAAACGCTACT+TGG | + | chr1_4:18111219-18111238 | None:intergenic | 40.0% | |
| ATGGAAACGTACACGAACTA+AGG | + | chr1_4:18111967-18111986 | None:intergenic | 40.0% | |
| GTCCCAATTCATCCATATGT+GGG | + | chr1_4:18112050-18112069 | None:intergenic | 40.0% | |
| TGTCCCAATTCATCCATATG+TGG | + | chr1_4:18112051-18112070 | None:intergenic | 40.0% | |
| ACGTCAACAAGAGTTCATGT+GGG | + | chr1_4:18112084-18112103 | None:intergenic | 40.0% | |
| AACGTCAACAAGAGTTCATG+TGG | + | chr1_4:18112085-18112104 | None:intergenic | 40.0% | |
| GACCTCATATATGTCTGGTT+TGG | + | chr1_4:18112293-18112312 | None:intergenic | 40.0% | |
| ACTAAGTCGGACACAAGTTA+AGG | - | chr1_4:18112449-18112468 | Msa0153980:intron | 40.0% | |
| AACAAATCCGGCCAACAATA+TGG | - | chr1_4:18112726-18112745 | Msa0153980:intron | 40.0% | |
| TTGGATTCCATATTGTTGGC+CGG | + | chr1_4:18112736-18112755 | None:intergenic | 40.0% | |
| CTGACCATTCATGGGTAAAA+TGG | - | chr1_4:18112982-18113001 | Msa0153980:intron | 40.0% | |
| ! | TCAACATTGGTTGATGTTGG+AGG | - | chr1_4:18113449-18113468 | Msa0153980:intron | 40.0% |
| TGCAGCTTGTATGTCATAAC+TGG | - | chr1_4:18113854-18113873 | Msa0153980:intron | 40.0% | |
| GCATGCTTAGACATATTGCT+AGG | + | chr1_4:18113982-18114001 | None:intergenic | 40.0% | |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | chr1_4:18109514-18109533 | None:intergenic | 45.0% |
| ! | TGAACGCATGTTGACTGTGT+TGG | - | chr1_4:18109543-18109562 | Msa0153980:CDS | 45.0% |
| GGATAAAGATGGAGGCTCTT+TGG | - | chr1_4:18109663-18109682 | Msa0153980:CDS | 45.0% | |
| CCATTGATGCAGAGAAAGAG+CGG | - | chr1_4:18110068-18110087 | Msa0153980:intron | 45.0% | |
| ! | GACCCTTTTGGTCTAATGCT+TGG | + | chr1_4:18110638-18110657 | None:intergenic | 45.0% |
| ! | GTGGACACTAGAGCATCATT+AGG | + | chr1_4:18110959-18110978 | None:intergenic | 45.0% |
| ACACGAACTAAGGCTCTGTT+TGG | + | chr1_4:18111957-18111976 | None:intergenic | 45.0% | |
| GATACTAATGTGTGCCCTCA+TGG | + | chr1_4:18112616-18112635 | None:intergenic | 45.0% | |
| TGGGGGATAGAGATGTAGTT+AGG | - | chr1_4:18113020-18113039 | Msa0153980:intron | 45.0% | |
| ! | ACATTGGTTGATGTTGGAGG+TGG | - | chr1_4:18113452-18113471 | Msa0153980:intron | 45.0% |
| GAGAGCTTATGTAAGAGAGC+TGG | - | chr1_4:18114066-18114085 | Msa0153980:CDS | 45.0% | |
| AAACTCCATCACTCCAGACA+TGG | + | chr1_4:18114130-18114149 | None:intergenic | 45.0% | |
| !!! | TCTAATTTTTTTTTTTTTTA+GGG | + | chr1_4:18109805-18109824 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTTTTTCT+GGG | - | chr1_4:18111454-18111473 | Msa0153980:intron | 5.0% |
| !!! | ATTTATTTTTTTTTTTTGAA+AGG | + | chr1_4:18112361-18112380 | None:intergenic | 5.0% |
| !!! | AATAAAATATTTTTATACTT+AGG | - | chr1_4:18112577-18112596 | Msa0153980:intron | 5.0% |
| !! | CAAAATATAAAATAAAATAT+TGG | + | chr1_4:18112804-18112823 | None:intergenic | 5.0% |
| !!! | AAAATATTAGATTTTTTTTA+AGG | + | chr1_4:18113821-18113840 | None:intergenic | 5.0% |
| AACACCCTGAATTGGCTGAG+AGG | - | chr1_4:18109518-18109537 | Msa0153980:CDS | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | chr1_4:18109525-18109544 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | chr1_4:18109526-18109545 | None:intergenic | 50.0% | |
| CCGCTCTTTCTCTGCATCAA+TGG | + | chr1_4:18110071-18110090 | None:intergenic | 50.0% | |
| AATCGTACGGGACTCAGTGA+AGG | + | chr1_4:18111333-18111352 | None:intergenic | 50.0% | |
| AACCAAGCAATGGGCCAATC+TGG | - | chr1_4:18113374-18113393 | Msa0153980:intron | 50.0% | |
| GTTGATGTTGGAGGTGGAGT+AGG | - | chr1_4:18113458-18113477 | Msa0153980:intron | 50.0% | |
| GGTGCATCTTGAACAGCTTG+TGG | + | chr1_4:18113545-18113564 | None:intergenic | 50.0% | |
| CAAGATGCACCTACTCATCC+AGG | - | chr1_4:18113554-18113573 | Msa0153980:intron | 50.0% | |
| CTTGTAGGGCTTGAGCATGT+TGG | - | chr1_4:18113686-18113705 | Msa0153980:intron | 50.0% | |
| AGTCATGTCTCAGCCATGTC+TGG | - | chr1_4:18114114-18114133 | Msa0153980:CDS | 50.0% | |
| CGGAGAAAGAGCTCTCCCTA+TGG | - | chr1_4:18110088-18110107 | Msa0153980:CDS | 55.0% | |
| GGAGTTAGGGCTATAGGGGT+CGG | - | chr1_4:18110481-18110500 | Msa0153980:intron | 55.0% | |
| CACTTGCAGGGGTGATGCAA+AGG | - | chr1_4:18113250-18113269 | Msa0153980:intron | 55.0% | |
| ! | GTCCAGATTGGCCCATTGCT+TGG | + | chr1_4:18113379-18113398 | None:intergenic | 55.0% |
| GTAGGGCTTGAGCATGTTGG+AGG | - | chr1_4:18113689-18113708 | Msa0153980:intron | 55.0% | |
| ! | TTGCTAGGGTTTGGGACCTC+TGG | + | chr1_4:18113967-18113986 | None:intergenic | 55.0% |
| ! | CTCAGCCATGTCTGGAGTGA+TGG | - | chr1_4:18114122-18114141 | Msa0153980:CDS | 55.0% |
| ! | CGGGACTCAGTGAAGGTGTG+TGG | + | chr1_4:18111326-18111345 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 18109253 | 18114397 | 18109253 | ID=Msa0153980;Name=Msa0153980 |
| chr1_4 | mRNA | 18109253 | 18114397 | 18109253 | ID=Msa0153980-mRNA-1;Parent=Msa0153980;Name=Msa0153980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=45|1|1|1|1|1|4|239|370 |
| chr1_4 | exon | 18109253 | 18109791 | 18109253 | ID=Msa0153980-mRNA-1:exon:6794;Parent=Msa0153980-mRNA-1 |
| chr1_4 | exon | 18109893 | 18109957 | 18109893 | ID=Msa0153980-mRNA-1:exon:6793;Parent=Msa0153980-mRNA-1 |
| chr1_4 | exon | 18110075 | 18110391 | 18110075 | ID=Msa0153980-mRNA-1:exon:6792;Parent=Msa0153980-mRNA-1 |
| chr1_4 | exon | 18113922 | 18114397 | 18113922 | ID=Msa0153980-mRNA-1:exon:6791;Parent=Msa0153980-mRNA-1 |
| chr1_4 | five_prime_UTR | 18114353 | 18114397 | 18114353 | ID=Msa0153980-mRNA-1:five_prime_utr;Parent=Msa0153980-mRNA-1 |
| chr1_4 | CDS | 18113922 | 18114352 | 18113922 | ID=Msa0153980-mRNA-1:cds;Parent=Msa0153980-mRNA-1 |
| chr1_4 | CDS | 18110075 | 18110391 | 18110075 | ID=Msa0153980-mRNA-1:cds;Parent=Msa0153980-mRNA-1 |
| chr1_4 | CDS | 18109893 | 18109957 | 18109893 | ID=Msa0153980-mRNA-1:cds;Parent=Msa0153980-mRNA-1 |
| chr1_4 | CDS | 18109492 | 18109791 | 18109492 | ID=Msa0153980-mRNA-1:cds;Parent=Msa0153980-mRNA-1 |
| chr1_4 | three_prime_UTR | 18109253 | 18109491 | 18109253 | ID=Msa0153980-mRNA-1:three_prime_utr;Parent=Msa0153980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
