Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054100 | XP_003588807.1 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 9.50e-89 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054100 | G7I7K6 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 4.54e-89 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054100 | Msa0054110 | 0.836248 | 1.045868e-56 | -8.615850e-47 |
| Msa0054100 | Msa0099840 | 0.804710 | 1.895721e-49 | -8.615850e-47 |
| Msa0054100 | Msa0268170 | 0.805455 | 1.323673e-49 | -8.615850e-47 |
| Msa0054100 | Msa0268190 | 0.813381 | 2.634957e-51 | -8.615850e-47 |
| Msa0054100 | Msa0268390 | 0.801638 | 8.191670e-49 | -8.615850e-47 |
| Msa0054100 | Msa0268410 | 0.808250 | 3.396241e-50 | -8.615850e-47 |
| Msa0054100 | Msa0268430 | 0.812832 | 3.477242e-51 | -8.615850e-47 |
| Msa0054100 | Msa0268550 | 0.800722 | 1.261068e-48 | -8.615850e-47 |
| Msa0054100 | Msa0268560 | 0.827708 | 1.347549e-54 | -8.615850e-47 |
| Msa0054100 | Msa0268570 | 0.811255 | 7.669991e-51 | -8.615850e-47 |
| Msa0054100 | Msa0268630 | 0.827618 | 1.416239e-54 | -8.615850e-47 |
| Msa0054100 | Msa0268740 | 0.834777 | 2.463396e-56 | -8.615850e-47 |
| Msa0054100 | Msa0268750 | 0.813731 | 2.205992e-51 | -8.615850e-47 |
| Msa0054100 | Msa0268830 | 0.841385 | 4.906155e-58 | -8.615850e-47 |
| Msa0054100 | Msa0268840 | 0.803027 | 4.240366e-49 | -8.615850e-47 |
| Msa0054100 | Msa0268860 | 0.819740 | 9.909639e-53 | -8.615850e-47 |
| Msa0054100 | Msa0268940 | 0.802493 | 5.464338e-49 | -8.615850e-47 |
| Msa0054100 | Msa0268950 | 0.827915 | 1.201784e-54 | -8.615850e-47 |
| Msa0054100 | Msa0268960 | 0.822421 | 2.390941e-53 | -8.615850e-47 |
| Msa0054100 | Msa0269040 | 0.839383 | 1.637791e-57 | -8.615850e-47 |
| Msa0054100 | Msa0269050 | 0.810579 | 1.074627e-50 | -8.615850e-47 |
| Msa0054100 | Msa0269070 | 0.826987 | 2.005995e-54 | -8.615850e-47 |
| Msa0054100 | Msa0344190 | 0.826048 | 3.359762e-54 | -8.615850e-47 |
| Msa0054100 | Msa0344310 | 0.830659 | 2.592359e-55 | -8.615850e-47 |
| Msa0054100 | Msa0582510 | 0.858193 | 9.747154e-63 | -8.615850e-47 |
| Msa0054100 | Msa0582540 | 0.808147 | 3.573173e-50 | -8.615850e-47 |
| Msa0054100 | Msa0582610 | 0.806068 | 9.842779e-50 | -8.615850e-47 |
| Msa0054100 | Msa0582640 | 0.828374 | 9.317520e-55 | -8.615850e-47 |
| Msa0054100 | Msa0582650 | 0.809621 | 1.728856e-50 | -8.615850e-47 |
| Msa0054100 | Msa0582690 | 0.854996 | 8.481071e-62 | -8.615850e-47 |
| Msa0054100 | Msa0582760 | 0.835024 | 2.134738e-56 | -8.615850e-47 |
| Msa0054100 | Msa0582770 | 0.807622 | 4.620452e-50 | -8.615850e-47 |
| Msa0054100 | Msa0582810 | 0.848365 | 6.420175e-60 | -8.615850e-47 |
| Msa0054100 | Msa0582910 | 0.835958 | 1.238955e-56 | -8.615850e-47 |
| Msa0054100 | Msa0582920 | 0.805291 | 1.433327e-49 | -8.615850e-47 |
| Msa0054100 | Msa0591380 | 0.803164 | 3.972001e-49 | -8.615850e-47 |
| Msa0054100 | Msa0908480 | 0.810275 | 1.249674e-50 | -8.615850e-47 |
| Msa0054100 | Msa0924870 | 0.813899 | 2.025859e-51 | -8.615850e-47 |
| Msa0054100 | Msa0924880 | 0.812441 | 4.232404e-51 | -8.615850e-47 |
| Msa0054100 | Msa0925040 | 0.804574 | 2.023466e-49 | -8.615850e-47 |
| Msa0054100 | Msa0931070 | 0.838883 | 2.207254e-57 | -8.615850e-47 |
| Msa0054100 | Msa0931130 | 0.847009 | 1.516565e-59 | -8.615850e-47 |
| Msa0054100 | Msa0931160 | 0.807661 | 4.532325e-50 | -8.615850e-47 |
| Msa0054100 | Msa0931220 | 0.817090 | 3.949421e-52 | -8.615850e-47 |
| Msa0054100 | Msa0931260 | 0.851248 | 1.004256e-60 | -8.615850e-47 |
| Msa0054100 | Msa1064410 | 0.828500 | 8.685706e-55 | -8.615850e-47 |
| Msa0054100 | Msa1086050 | 0.810884 | 9.232604e-51 | -8.615850e-47 |
| Msa0054100 | Msa1086080 | 0.813648 | 2.301742e-51 | -8.615850e-47 |
| Msa0054100 | Msa1086090 | 0.802455 | 5.565458e-49 | -8.615850e-47 |
| Msa0054100 | Msa1086140 | 0.847975 | 8.229508e-60 | -8.615850e-47 |
| Msa0054100 | Msa1086190 | 0.829967 | 3.828028e-55 | -8.615850e-47 |
| Msa0054100 | Msa1086200 | 0.821347 | 4.237451e-53 | -8.615850e-47 |
| Msa0054100 | Msa1086270 | 0.829351 | 5.403008e-55 | -8.615850e-47 |
| Msa0054100 | Msa1086360 | 0.810518 | 1.107567e-50 | -8.615850e-47 |
| Msa0054100 | Msa1086380 | 0.805887 | 1.074211e-49 | -8.615850e-47 |
| Msa0054100 | Msa1086430 | 0.803299 | 3.724440e-49 | -8.615850e-47 |
| Msa0054100 | Msa1086470 | 0.802202 | 6.274189e-49 | -8.615850e-47 |
| Msa0054100 | Msa1086860 | 0.807668 | 4.516274e-50 | -8.615850e-47 |
| Msa0054100 | Msa1086880 | 0.807011 | 6.225416e-50 | -8.615850e-47 |
| Msa0054100 | Msa1086890 | 0.827236 | 1.748593e-54 | -8.615850e-47 |
| Msa0054100 | Msa1086900 | 0.807989 | 3.860993e-50 | -8.615850e-47 |
| Msa0054100 | Msa1143120 | 0.844670 | 6.548711e-59 | -8.615850e-47 |
| Msa0054100 | Msa1143160 | 0.816823 | 4.532600e-52 | -8.615850e-47 |
| Msa0054100 | Msa1305090 | 0.814078 | 1.849842e-51 | -8.615850e-47 |
| Msa0054100 | Msa1354910 | 0.814876 | 1.232059e-51 | -8.615850e-47 |
| Msa0054100 | Msa1354920 | 0.801314 | 9.544080e-49 | -8.615850e-47 |
| Msa0054100 | Msa1355080 | 0.823680 | 1.215675e-53 | -8.615850e-47 |
| Msa0054100 | Msa1355100 | 0.804906 | 1.724982e-49 | -8.615850e-47 |
| Msa0054100 | Msa1380600 | 0.804879 | 1.747362e-49 | -8.615850e-47 |
| Msa0054100 | Msa1380620 | 0.801215 | 1.000389e-48 | -8.615850e-47 |
| Msa0054100 | Msa1394040 | 0.835812 | 1.349261e-56 | -8.615850e-47 |
| Msa0054100 | Msa1394060 | 0.803471 | 3.431835e-49 | -8.615850e-47 |
| Msa0054100 | Msa1394150 | 0.833646 | 4.732987e-56 | -8.615850e-47 |
| Msa0054100 | Msa1394160 | 0.804145 | 2.486454e-49 | -8.615850e-47 |
| Msa0054100 | Msa1394210 | 0.835787 | 1.369319e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054100 | MtrunA17_Chr1g0150481 | 99.219 | 128 | 1 | 0 | 1 | 128 | 1 | 128 | 8.74e-93 | 263 |
| Msa0054100 | MtrunA17_Chr3g0142391 | 96.875 | 128 | 4 | 0 | 1 | 128 | 1 | 128 | 3.06e-91 | 259 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0054100 | AT5G39600.1 | 78.740 | 127 | 27 | 0 | 1 | 127 | 1 | 127 | 1.48e-71 | 210 |
Find 208 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACATTTACTTTGAAATTT+AGG | 0.088666 | 1_2:-8678856 | Msa0054100:five_prime_UTR |
| TAATTGAGATCAGGGAATTT+AGG | 0.162993 | 1_2:-8679485 | Msa0054100:five_prime_UTR |
| GACATTTACTTTGAAATTTA+GGG | 0.205658 | 1_2:-8678855 | Msa0054100:five_prime_UTR |
| AGCAGCTGCGTCGGCTTTGC+AGG | 0.207136 | 1_2:-8679273 | Msa0054100:five_prime_UTR |
| TTCATAAACAAGGGAGAAAA+AGG | 0.210480 | 1_2:-8678412 | Msa0054100:five_prime_UTR |
| AATTTGAGATATCATCTTTC+AGG | 0.227156 | 1_2:-8676011 | Msa0054100:three_prime_UTR |
| GTATATGTTAATGATATATT+AGG | 0.232906 | 1_2:+8680343 | Msa0054110:three_prime_UTR |
| GCGAACCTTCCTTTAATTCT+AGG | 0.237184 | 1_2:-8680060 | Msa0054100:five_prime_UTR |
| TAACCACTGGGAATTGTTCT+AGG | 0.247546 | 1_2:-8676553 | Msa0054100:three_prime_UTR |
| GAAACTCGACCTAGAATTAA+AGG | 0.252531 | 1_2:+8680051 | Msa0054110:CDS |
| CCAGAATCATCTTCGTTATA+CGG | 0.253037 | 1_2:+8678160 | None:intergenic |
| TACTGGTGGCATATTCTCTT+TGG | 0.262234 | 1_2:-8678566 | Msa0054100:five_prime_UTR |
| GAATGTGTGGTTGTGGTGAT+TGG | 0.270371 | 1_2:-8678962 | Msa0054100:five_prime_UTR |
| CAAAATTAGCAGTAAATAAA+AGG | 0.271000 | 1_2:-8678602 | Msa0054100:five_prime_UTR |
| ATTTAGGGTTTGAAGGAGTT+TGG | 0.272290 | 1_2:-8679469 | Msa0054100:five_prime_UTR |
| AATTGAGATCAGGGAATTTA+GGG | 0.282604 | 1_2:-8679484 | Msa0054100:five_prime_UTR |
| AATTTCAAAGTAAATGTCTT+TGG | 0.284553 | 1_2:+8678860 | None:intergenic |
| AATGTGTGGTTGTGGTGATT+GGG | 0.291161 | 1_2:-8678961 | Msa0054100:five_prime_UTR |
| TGGGGTAAAGTATCACTATT+TGG | 0.293723 | 1_2:-8678942 | Msa0054100:five_prime_UTR |
| CAATGCCTACATTTGAAGTT+TGG | 0.297387 | 1_2:-8676262 | Msa0054100:three_prime_UTR |
| CCGTATAACGAAGATGATTC+TGG | 0.317599 | 1_2:-8678160 | Msa0054100:CDS |
| GTGACGAAATCGTCAATTTC+GGG | 0.319268 | 1_2:-8679524 | Msa0054100:five_prime_UTR |
| AAGGCATGGTGAAAATAAAA+AGG | 0.331568 | 1_2:+8676343 | None:intergenic |
| TGTTGCTTTGGATGACTTGC+AGG | 0.340517 | 1_2:-8679117 | Msa0054100:five_prime_UTR |
| AGGAATTTATACATATAATA+AGG | 0.345455 | 1_2:-8680459 | Msa0054100:five_prime_UTR |
| AAGAAGCAGAAGCTGCTTCC+TGG | 0.355450 | 1_2:+8679441 | Msa0054110:CDS |
| ATGTATAAATTCCTTTGGTT+TGG | 0.360369 | 1_2:+8680468 | Msa0054110:three_prime_UTR |
| TCAGGGAATTTAGGGTTTGA+AGG | 0.367060 | 1_2:-8679476 | Msa0054100:five_prime_UTR |
| AGTGACGAAATCGTCAATTT+CGG | 0.368521 | 1_2:-8679525 | Msa0054100:five_prime_UTR |
| GACGCCATCTGCGGTGGTGC+CGG | 0.374473 | 1_2:-8679585 | Msa0054100:five_prime_UTR |
| CACCGCAGATGGCGTCGTTC+CGG | 0.376246 | 1_2:+8679592 | Msa0054110:CDS |
| AACTCGATAATTCAGTTCTA+AGG | 0.376645 | 1_2:+8676487 | None:intergenic |
| CAATTCAATAAACAACAAAA+TGG | 0.385236 | 1_2:+8679076 | Msa0054110:exon |
| ATTATATGTATAAATTCCTT+TGG | 0.388023 | 1_2:+8680463 | Msa0054110:three_prime_UTR |
| GTGGCGGGAGGCGAGTTTGT+TGG | 0.388480 | 1_2:-8679201 | Msa0054100:five_prime_UTR |
| AACGAAGATGATTCTGGAAA+AGG | 0.393234 | 1_2:-8678154 | Msa0054100:CDS |
| GCTGTTGTTGTGGTGGTGGA+AGG | 0.394821 | 1_2:-8679372 | Msa0054100:five_prime_UTR |
| GAGAGAAAAGAAAGAATAGA+AGG | 0.401420 | 1_2:+8679986 | Msa0054110:CDS |
| TCTTCATCAGGAATGATAAC+AGG | 0.403293 | 1_2:+8678081 | None:intergenic |
| GAGTGTGACGCGGTGGTGGC+GGG | 0.403622 | 1_2:-8679216 | Msa0054100:five_prime_UTR |
| TTCTTCTCCTCTGCTTTCCT+CGG | 0.408134 | 1_2:+8676603 | None:intergenic |
| TAGTGAGAGTAATTGAGATC+AGG | 0.412297 | 1_2:-8679494 | Msa0054100:five_prime_UTR |
| ACGGCAGAATAGTGTTGCTT+TGG | 0.415438 | 1_2:-8679129 | Msa0054100:five_prime_UTR |
| ACACAACAACTATAACTGTT+TGG | 0.416156 | 1_2:+8676135 | None:intergenic |
| CAGAGAAGAATGATTGTTGT+TGG | 0.418301 | 1_2:-8679394 | Msa0054100:five_prime_UTR |
| AGCTTCTGCTTCTTCGTTGG+TGG | 0.421356 | 1_2:-8679432 | Msa0054100:five_prime_UTR |
| CCGTCTCTGTCGCCGTCGTT+TGG | 0.426542 | 1_2:-8679900 | Msa0054100:five_prime_UTR |
| TACTTTGAAATTTAGGGATA+GGG | 0.427212 | 1_2:-8678849 | Msa0054100:five_prime_UTR |
| ACGCCATCTGCGGTGGTGCC+GGG | 0.428709 | 1_2:-8679584 | Msa0054100:five_prime_UTR |
| AGAGTGTGACGCGGTGGTGG+CGG | 0.429623 | 1_2:-8679217 | Msa0054100:five_prime_UTR |
| AACTTCATACATAGTTCAAC+AGG | 0.431616 | 1_2:-8680142 | Msa0054100:five_prime_UTR |
| AGTGAGAGTAATTGAGATCA+GGG | 0.433298 | 1_2:-8679493 | Msa0054100:five_prime_UTR |
| ATGTGTGGTTGTGGTGATTG+GGG | 0.434776 | 1_2:-8678960 | Msa0054100:five_prime_UTR |
| TATCACTATTTGGTGGGGTA+GGG | 0.436801 | 1_2:-8678932 | Msa0054100:five_prime_UTR |
| TTACTTTGAAATTTAGGGAT+AGG | 0.437945 | 1_2:-8678850 | Msa0054100:five_prime_UTR |
| AAAGTAAATGTCTTTGGCTA+AGG | 0.439439 | 1_2:+8678866 | None:intergenic |
| TCCGTCATCACGTTTCCGTC+TGG | 0.440194 | 1_2:-8679859 | Msa0054100:five_prime_UTR |
| CGTTCGTGGCGGCGAGCTAG+TGG | 0.441707 | 1_2:-8679335 | Msa0054100:five_prime_UTR |
| GTATCACTATTTGGTGGGGT+AGG | 0.441747 | 1_2:-8678933 | Msa0054100:five_prime_UTR |
| ACGAAGATGATTCTGGAAAA+GGG | 0.442229 | 1_2:-8678153 | Msa0054100:CDS |
| GTTGTTGTGGTGGTGGAAGG+TGG | 0.443643 | 1_2:-8679369 | Msa0054100:five_prime_UTR |
| ATCGGAACCGCCACCGTCAT+CGG | 0.447848 | 1_2:-8679925 | Msa0054100:five_prime_UTR |
| TCCACGAACTGCATCATGTA+TGG | 0.449429 | 1_2:-8678340 | Msa0054100:CDS |
| GCAGCAGATGCGAGATAAAA+CGG | 0.452597 | 1_2:+8676523 | None:intergenic |
| TGGTTTAGCTTATTAACCAC+TGG | 0.457433 | 1_2:-8676566 | Msa0054100:three_prime_UTR |
| TAATGCAAAATTTGACATAG+TGG | 0.457744 | 1_2:-8675903 | Msa0054100:three_prime_UTR |
| GCAGCTACATGGTGATCATA+TGG | 0.460331 | 1_2:-8676102 | Msa0054100:three_prime_UTR |
| AAGGCATCAATGTGGCATAC+TGG | 0.461670 | 1_2:-8678583 | Msa0054100:five_prime_UTR |
| CCGGAGCTTGTTCACAGACT+TGG | 0.464846 | 1_2:-8679241 | Msa0054100:five_prime_UTR |
| TTAGGTATCTTCGCCGTCGA+TGG | 0.464857 | 1_2:+8679822 | Msa0054110:intron |
| ATCACAGTGACATTTGTTAA+CGG | 0.466405 | 1_2:-8678222 | Msa0054100:CDS |
| GAACAAATGTTTCGTGAAGC+AGG | 0.466679 | 1_2:-8678114 | Msa0054100:CDS |
| TGGTGGTGGAAGGTGGTGAG+AGG | 0.469506 | 1_2:-8679362 | Msa0054100:five_prime_UTR |
| TCTCTTTCCACCGCCGTCAT+CGG | 0.470887 | 1_2:-8679943 | Msa0054100:five_prime_UTR |
| GTTGGCTGTTGTTGTGGTGG+TGG | 0.471357 | 1_2:-8679376 | Msa0054100:five_prime_UTR |
| TTCACCTCAACTTCGCAGGC+AGG | 0.472420 | 1_2:+8678273 | None:intergenic |
| ATGCAACAATTTAGAACCGT+TGG | 0.473284 | 1_2:-8675816 | Msa0054100:three_prime_UTR |
| GAGTGTAGAAGAGGAGAGGA+GGG | 0.474017 | 1_2:-8678984 | Msa0054100:five_prime_UTR |
| AGCAGCTTCTGCTTCTTCGT+TGG | 0.474181 | 1_2:-8679435 | Msa0054100:five_prime_UTR |
| GCTTTGCAGGTGACGTGAGC+CGG | 0.474575 | 1_2:-8679260 | Msa0054100:five_prime_UTR |
| AGAAAACGCACTTTGGTGCC+AGG | 0.475802 | 1_2:+8678042 | None:intergenic |
| GGCGGTTCCGATGACGGCGG+TGG | 0.476197 | 1_2:+8679936 | Msa0054110:CDS |
| CTTCGATTAGAAAGAAAGAA+AGG | 0.480134 | 1_2:+8680167 | Msa0054110:three_prime_UTR |
| ATCACTATTTGGTGGGGTAG+GGG | 0.482413 | 1_2:-8678931 | Msa0054100:five_prime_UTR |
| TTGCAGTACTTAGTATCATA+AGG | 0.482570 | 1_2:+8676166 | None:intergenic |
| GACGGTGGCGGTTCCGATGA+CGG | 0.482863 | 1_2:+8679930 | Msa0054110:CDS |
| ATCTTCGTTATACGGTGAAC+CGG | 0.487143 | 1_2:+8678168 | None:intergenic |
| TGCAACAATTTAGAACCGTT+GGG | 0.489062 | 1_2:-8675815 | Msa0054100:three_prime_UTR |
| TCCATACATGATGCAGTTCG+TGG | 0.490045 | 1_2:+8678339 | None:intergenic |
| TTGGATTGGGAGTGTAGAAG+AGG | 0.490072 | 1_2:-8678993 | Msa0054100:five_prime_UTR |
| GACGATTTCGTCACTGTCAA+CGG | 0.491915 | 1_2:+8679533 | Msa0054110:CDS |
| TTAATTGCAGAGGATGAATA+CGG | 0.494889 | 1_2:+8680108 | Msa0054110:CDS |
| GCCAACTCATAATTCTCTAC+TGG | 0.503584 | 1_2:-8675864 | Msa0054100:three_prime_UTR |
| GTTGTTGGCTGTTGTTGTGG+TGG | 0.504240 | 1_2:-8679379 | Msa0054100:five_prime_UTR |
| TGAAGGAGTTTGGAGAAGCC+AGG | 0.505414 | 1_2:-8679459 | Msa0054100:five_prime_UTR |
| GGCAGAGTGTGACGCGGTGG+TGG | 0.506125 | 1_2:-8679220 | Msa0054100:five_prime_UTR |
| GTAGTGTTCGTGTTCGTGTT+CGG | 0.509358 | 1_2:-8679639 | Msa0054100:five_prime_UTR |
| TGTTGAGAGAGTTCTTCATC+AGG | 0.509502 | 1_2:+8678069 | None:intergenic |
| AACAAATGTTTCGTGAAGCA+GGG | 0.509969 | 1_2:-8678113 | Msa0054100:CDS |
| TTGTGGTTATTTCATAAACA+AGG | 0.512854 | 1_2:-8678422 | Msa0054100:five_prime_UTR |
| GGAGTGTAGAAGAGGAGAGG+AGG | 0.513691 | 1_2:-8678985 | Msa0054100:five_prime_UTR |
| CAGCAGATGCGAGATAAAAC+GGG | 0.514142 | 1_2:+8676524 | None:intergenic |
| TGGTGAGAGGGACACGTTCG+TGG | 0.516914 | 1_2:-8679349 | Msa0054100:five_prime_UTR |
| AGGGATGCAAGGACAGAAAG+AGG | 0.524843 | 1_2:-8678830 | Msa0054100:five_prime_UTR |
| GGTATCTTCGCCGTCGATGG+AGG | 0.526645 | 1_2:+8679825 | Msa0054110:intron |
| ATCTTGAGAGTAGCTAATTG+AGG | 0.529014 | 1_2:-8678906 | Msa0054100:five_prime_UTR |
| AGAGGAGAGGAGGGAATGTG+TGG | 0.529036 | 1_2:-8678975 | Msa0054100:five_prime_UTR |
| CTAAACCAAACTTCAAATGT+AGG | 0.531759 | 1_2:+8676257 | None:intergenic |
| TGAGAGTGTTGTGAGTGTGT+TGG | 0.533685 | 1_2:-8679029 | Msa0054100:five_prime_UTR |
| CCAAGTCTGTGAACAAGCTC+CGG | 0.534270 | 1_2:+8679241 | Msa0054110:CDS |
| AAATATGAATTTAATTGCAG+AGG | 0.534945 | 1_2:+8680098 | Msa0054110:CDS |
| TTCGTGTTCGTGTTCGGTGG+TGG | 0.536195 | 1_2:-8679633 | Msa0054100:five_prime_UTR |
| CTTTGTATACACTTTAATTG+TGG | 0.538201 | 1_2:-8678439 | Msa0054100:five_prime_UTR |
| AGTCCCGGCACCACCGCAGA+TGG | 0.542153 | 1_2:+8679581 | Msa0054110:CDS |
| CGGCGGTGGAAAGAGAAGCT+AGG | 0.543681 | 1_2:+8679950 | Msa0054110:CDS |
| TGTGGTTATTTCATAAACAA+GGG | 0.543889 | 1_2:-8678421 | Msa0054100:five_prime_UTR |
| TCTTGAGAGTAGCTAATTGA+GGG | 0.545062 | 1_2:-8678905 | Msa0054100:five_prime_UTR |
| GTTCGTGGCGGCGAGCTAGT+GGG | 0.545982 | 1_2:-8679334 | Msa0054100:five_prime_UTR |
| GAGGAGGGAATGTGTGGTTG+TGG | 0.546672 | 1_2:-8678969 | Msa0054100:five_prime_UTR |
| TCACCTCAACTTCGCAGGCA+GGG | 0.547983 | 1_2:+8678274 | None:intergenic |
| GGTGGTGGAAGGTGGTGAGA+GGG | 0.548296 | 1_2:-8679361 | Msa0054100:five_prime_UTR |
| AGGCGAGTTTGTTGGCAGCA+TGG | 0.549459 | 1_2:-8679193 | Msa0054100:five_prime_UTR |
| GGCAAGGATATAATAAAAGC+GGG | 0.549674 | 1_2:+8678532 | None:intergenic |
| ATTCAGAGTTCAAATTGAAG+AGG | 0.550248 | 1_2:-8679775 | Msa0054100:five_prime_UTR |
| AGAGTGGATGTCATGATCAC+AGG | 0.550527 | 1_2:-8679306 | Msa0054100:five_prime_UTR |
| TCTTCGCCGTCGATGGAGGT+TGG | 0.551535 | 1_2:+8679829 | Msa0054110:CDS |
| GTAAAGTATCACTATTTGGT+GGG | 0.551859 | 1_2:-8678938 | Msa0054100:five_prime_UTR |
| ACGCCGGAGCAAAACAGTCC+CGG | 0.553478 | 1_2:+8679566 | Msa0054110:CDS |
| CGGAACGACGCCATCTGCGG+TGG | 0.553872 | 1_2:-8679591 | Msa0054100:five_prime_UTR |
| AAACCCTGCCTGCGAAGTTG+AGG | 0.556200 | 1_2:-8678277 | Msa0054100:CDS |
| TGACATAGTGGAAATTAATG+TGG | 0.558666 | 1_2:-8675891 | Msa0054100:three_prime_UTR |
| GGCGGTGGAAAGAGAAGCTA+GGG | 0.558883 | 1_2:+8679951 | Msa0054110:CDS |
| ATTGTTGTTGGCTGTTGTTG+TGG | 0.558963 | 1_2:-8679382 | Msa0054100:five_prime_UTR |
| TTGGGAGTGTAGAAGAGGAG+AGG | 0.559292 | 1_2:-8678988 | Msa0054100:five_prime_UTR |
| ACGTTTCACCTCAACTTCGC+AGG | 0.559908 | 1_2:+8678269 | None:intergenic |
| GACGGCGCCGATGACGGTGG+CGG | 0.560155 | 1_2:+8679918 | Msa0054110:CDS |
| GGTTTAGCTTATTAACCACT+GGG | 0.564730 | 1_2:-8676565 | Msa0054100:three_prime_UTR |
| ATGATCACCATGTAGCTGCT+TGG | 0.565455 | 1_2:+8676106 | None:intergenic |
| CTTTGGCTAAGGCTCACCCA+CGG | 0.568239 | 1_2:+8678877 | None:intergenic |
| GAAACATTTGTTCAGTCTCA+AGG | 0.568869 | 1_2:+8678124 | None:intergenic |
| TTTGGCTAAGGCTCACCCAC+GGG | 0.570733 | 1_2:+8678878 | None:intergenic |
| TTAGTGTTCTTGTGATTGAG+AGG | 0.572305 | 1_2:-8676238 | Msa0054100:three_prime_UTR |
| ACCAGACGGAAACGTGATGA+CGG | 0.572547 | 1_2:+8679858 | Msa0054110:CDS |
| ACCAGTAGAGAATTATGAGT+TGG | 0.574445 | 1_2:+8675863 | None:intergenic |
| TAGTGTTCTTGTGATTGAGA+GGG | 0.578101 | 1_2:-8676237 | Msa0054100:three_prime_UTR |
| TGATTGAAATTGTAAGTGAA+AGG | 0.578430 | 1_2:-8679695 | Msa0054100:five_prime_UTR |
| TGACAGCTTAAAACAAGGCA+TGG | 0.580565 | 1_2:+8676329 | None:intergenic |
| TGTGACGCGGTGGTGGCGGG+AGG | 0.581988 | 1_2:-8679213 | Msa0054100:five_prime_UTR |
| GATGTTCACACATAGCTTCG+TGG | 0.582632 | 1_2:+8676370 | None:intergenic |
| AAATAAATTTCATGTCGGCA+AGG | 0.586964 | 1_2:+8678516 | None:intergenic |
| TTTGTTGGCAGCATGGATGT+TGG | 0.587996 | 1_2:-8679186 | Msa0054100:five_prime_UTR |
| CACCGGAACGACGCCATCTG+CGG | 0.589463 | 1_2:-8679594 | Msa0054100:five_prime_UTR |
| GACAGAGACGGCGCCGATGA+CGG | 0.593724 | 1_2:+8679912 | Msa0054110:CDS |
| TTCGTGAAGCAGGGGAACAA+TGG | 0.596028 | 1_2:-8678104 | Msa0054100:CDS |
| ATTGAGAGGGTGATTTCTGT+CGG | 0.602555 | 1_2:-8676224 | Msa0054100:three_prime_UTR |
| GAACTCTCTCAACATGCACC+TGG | 0.603714 | 1_2:-8678060 | Msa0054100:CDS |
| CCAAACGACGGCGACAGAGA+CGG | 0.604022 | 1_2:+8679900 | Msa0054110:CDS |
| TGGAATCACATGTGAGACAA+AGG | 0.606070 | 1_2:-8679166 | Msa0054100:five_prime_UTR |
| AGCGCAATGCAACTCACGAA+AGG | 0.606591 | 1_2:-8678310 | Msa0054100:CDS |
| AGGGACTCTTCTGAGATGAG+TGG | 0.606657 | 1_2:-8678810 | Msa0054100:five_prime_UTR |
| TAAAGTATCACTATTTGGTG+GGG | 0.607778 | 1_2:-8678937 | Msa0054100:five_prime_UTR |
| GGTAAAGTATCACTATTTGG+TGG | 0.608011 | 1_2:-8678939 | Msa0054100:five_prime_UTR |
| CTTCCAGCCGAGGAAAGCAG+AGG | 0.610495 | 1_2:-8676610 | Msa0054100:intron |
| AAAACAAATAAATTTCATGT+CGG | 0.611849 | 1_2:+8678511 | None:intergenic |
| CGGCAAGGATATAATAAAAG+CGG | 0.612511 | 1_2:+8678531 | None:intergenic |
| ACAAACAATCTCAAAATACA+TGG | 0.615194 | 1_2:+8675944 | None:intergenic |
| GATACATAGAGCAGCTGCGT+CGG | 0.618915 | 1_2:-8679282 | Msa0054100:five_prime_UTR |
| TTTGATGCCAAGCAGCTACA+TGG | 0.619235 | 1_2:-8676113 | Msa0054100:three_prime_UTR |
| GCTAATTGAGGGATGACCCG+TGG | 0.620463 | 1_2:-8678894 | Msa0054100:five_prime_UTR |
| TAATCCAAACTCCAAACCAA+AGG | 0.621247 | 1_2:-8680479 | None:intergenic |
| ACTCGACCTTCACTCTCGAT+AGG | 0.624950 | 1_2:+8678376 | None:intergenic |
| CTAATTGAGGGATGACCCGT+GGG | 0.625448 | 1_2:-8678893 | Msa0054100:five_prime_UTR |
| CTCGACCTAGAATTAAAGGA+AGG | 0.631588 | 1_2:+8680055 | Msa0054110:CDS |
| AAAGGAAAGCTGAATCAGAA+CGG | 0.631900 | 1_2:-8679148 | Msa0054100:five_prime_UTR |
| GAAGAAGCAATAGCTAACAA+TGG | 0.632396 | 1_2:-8676586 | Msa0054100:exon |
| AATTTAGGGATAGGGATGCA+AGG | 0.632979 | 1_2:-8678841 | Msa0054100:five_prime_UTR |
| AGATAAAATTCATTACCCAA+CGG | 0.635918 | 1_2:+8675800 | None:intergenic |
| ACAACTCCAACCTCCATCGA+CGG | 0.637687 | 1_2:-8679835 | Msa0054100:five_prime_UTR |
| GTGTTCGTGTTCGTGTTCGG+TGG | 0.637730 | 1_2:-8679636 | Msa0054100:five_prime_UTR |
| GCATCAATGTGGCATACTGG+TGG | 0.639001 | 1_2:-8678580 | Msa0054100:five_prime_UTR |
| GAGCTAGTGGGTTAGCAGAG+TGG | 0.641063 | 1_2:-8679322 | Msa0054100:five_prime_UTR |
| GGGATGCAAGGACAGAAAGA+GGG | 0.642108 | 1_2:-8678829 | Msa0054100:five_prime_UTR |
| TGAGGTGAAACGTGGAAATG+TGG | 0.643314 | 1_2:-8678259 | Msa0054100:CDS |
| GAAATTCCTATCGAGAGTGA+AGG | 0.644033 | 1_2:-8678382 | Msa0054100:CDS |
| ACAAATGTTTCGTGAAGCAG+GGG | 0.647258 | 1_2:-8678112 | Msa0054100:CDS |
| AATGTCACTGTGATCTGTGG+TGG | 0.647419 | 1_2:+8678231 | None:intergenic |
| ATGTCACTGTGATCTGTGGT+GGG | 0.660137 | 1_2:+8678232 | None:intergenic |
| AAAATATTAACCTAAGCACA+AGG | 0.661387 | 1_2:-8676062 | Msa0054100:three_prime_UTR |
| TTCAGTTCTAAGGAACAGCA+CGG | 0.667181 | 1_2:+8676497 | None:intergenic |
| AGAAAACACAACCTGCACCA+AGG | 0.667784 | 1_2:+8678484 | None:intergenic |
| TCATTTGACAGCTTAAAACA+AGG | 0.670741 | 1_2:+8676324 | None:intergenic |
| AGTGACATTTGTTAACGGTG+TGG | 0.673167 | 1_2:-8678217 | Msa0054100:CDS |
| TCATACATAGTTCAACAGGA+AGG | 0.676360 | 1_2:-8680138 | Msa0054100:five_prime_UTR |
| ACAAATGTCACTGTGATCTG+TGG | 0.681462 | 1_2:+8678228 | None:intergenic |
| AGAGACGGCGCCGATGACGG+TGG | 0.685333 | 1_2:+8679915 | Msa0054110:CDS |
| GTTCGATGCAACATCAACGC+CGG | 0.693316 | 1_2:-8678187 | Msa0054100:CDS |
| GAGGTTGGAGTTGTACCAGA+CGG | 0.695762 | 1_2:+8679844 | Msa0054110:CDS |
| TGCGAAGTTGAGGTGAAACG+TGG | 0.696804 | 1_2:-8678267 | Msa0054100:CDS |
| GTAAATAAAAGGCATCAATG+TGG | 0.701494 | 1_2:-8678591 | Msa0054100:five_prime_UTR |
| TGAGAGGGACACGTTCGTGG+CGG | 0.705181 | 1_2:-8679346 | Msa0054100:five_prime_UTR |
| CAACGGTAAAACAGACACGC+CGG | 0.705434 | 1_2:+8679550 | Msa0054110:CDS |
| CTTGGCAGAGTGTGACGCGG+TGG | 0.706255 | 1_2:-8679223 | Msa0054100:five_prime_UTR |
| AGACTTGGCAGAGTGTGACG+CGG | 0.706454 | 1_2:-8679226 | Msa0054100:five_prime_UTR |
| TGACGAAATCGTCAATTTCG+GGG | 0.717237 | 1_2:-8679523 | Msa0054100:five_prime_UTR |
| AAACCTAGAACAATTCCCAG+TGG | 0.754435 | 1_2:+8676550 | None:intergenic |
| GTACTGCGGTTACCAAACGA+CGG | 0.762753 | 1_2:+8679888 | Msa0054110:CDS |
| GGTGGCGGTTCCGATGACGG+CGG | 0.772550 | 1_2:+8679933 | Msa0054110:CDS |
| ATGACGGAGATATCGTACTG+CGG | 0.812252 | 1_2:+8679874 | Msa0054110:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGGTTAATATTTTAAATT+GGG | + | chr1_2:8680204-8680223 | Msa0054110:three_prime_UTR | 10.0% |
| !! | ATTATATGTATAAATTCCTT+TGG | + | chr1_2:8675811-8675830 | None:intergenic | 15.0% |
| !! | AGGAATTTATACATATAATA+AGG | - | chr1_2:8675812-8675831 | Msa0054100:three_prime_UTR | 15.0% |
| !! | GTATATGTTAATGATATATT+AGG | + | chr1_2:8675931-8675950 | None:intergenic | 15.0% |
| !!! | ATCGTAATTTTTTTGAATTT+TGG | - | chr1_2:8676534-8676553 | Msa0054100:three_prime_UTR | 15.0% |
| !! | TCCTAGAAAATAAAAATAAA+AGG | + | chr1_2:8677617-8677636 | None:intergenic | 15.0% |
| !! | AAAACAAATAAATTTCATGT+CGG | + | chr1_2:8677763-8677782 | None:intergenic | 15.0% |
| !!! | ATTTATTTGTTTTTTTTCCT+TGG | - | chr1_2:8677770-8677789 | Msa0054100:intron | 15.0% |
| !! | ATTTACCTAAAGAATTATTA+AGG | + | chr1_2:8678470-8678489 | None:intergenic | 15.0% |
| !! | AATAATTCTTTAGGTAAATT+AGG | - | chr1_2:8678471-8678490 | Msa0054100:five_prime_UTR | 15.0% |
| !!! | CTAAATGTTTCTATAATAAT+TGG | - | chr1_2:8679424-8679443 | Msa0054100:five_prime_UTR | 15.0% |
| !!! | ATAATAATTGGAATATGTTT+TGG | - | chr1_2:8679436-8679455 | Msa0054100:five_prime_UTR | 15.0% |
| !!! | CTTAGGTTAATATTTTAAAT+TGG | + | chr1_2:8680205-8680224 | Msa0054110:three_prime_UTR | 15.0% |
| !! | AAATATGAATTTAATTGCAG+AGG | + | chr1_2:8676176-8676195 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTTTGTGTTGTTT+AGG | + | chr1_2:8676470-8676489 | None:intergenic | 20.0% |
| !! | CAATTCAATAAACAACAAAA+TGG | + | chr1_2:8677198-8677217 | None:intergenic | 20.0% |
| !! | AATTTCAAAGTAAATGTCTT+TGG | + | chr1_2:8677414-8677433 | None:intergenic | 20.0% |
| !!! | AGACATTTACTTTGAAATTT+AGG | - | chr1_2:8677415-8677434 | Msa0054100:intron | 20.0% |
| !!! | GACATTTACTTTGAAATTTA+GGG | - | chr1_2:8677416-8677435 | Msa0054100:intron | 20.0% |
| !!! | GCCTTTTATTTTTATTTTCT+AGG | - | chr1_2:8677613-8677632 | Msa0054100:intron | 20.0% |
| !!! | CTTTTATTTACTGCTAATTT+TGG | + | chr1_2:8677671-8677690 | None:intergenic | 20.0% |
| !! | CAAAATTAGCAGTAAATAAA+AGG | - | chr1_2:8677669-8677688 | Msa0054100:intron | 20.0% |
| !! | TGTTACCTTAATAATTCTTT+AGG | - | chr1_2:8678462-8678481 | Msa0054100:five_prime_UTR | 20.0% |
| !!! | GTTAAGTAATAAATGGATTA+AGG | + | chr1_2:8679139-8679158 | Msa0054110:CDS | 20.0% |
| !! | AATGCTAGTTAAGTAATAAA+TGG | + | chr1_2:8679146-8679165 | Msa0054110:CDS | 20.0% |
| !! | ATCAAGATATTATCTTAGTA+TGG | - | chr1_2:8679186-8679205 | Msa0054100:five_prime_UTR | 20.0% |
| !! | AAATAGTAATTACAGTACAT+TGG | - | chr1_2:8679547-8679566 | Msa0054100:five_prime_UTR | 20.0% |
| !!! | ACTATTTTGCTATTTTGAAA+AGG | - | chr1_2:8680288-8680307 | Msa0054100:five_prime_UTR | 20.0% |
| ! | ATGTATAAATTCCTTTGGTT+TGG | + | chr1_2:8675806-8675825 | None:intergenic | 25.0% |
| ! | ACTTGAAAAACATTCAAACA+CGG | - | chr1_2:8676080-8676099 | Msa0054100:three_prime_UTR | 25.0% |
| ! | TGATTGAAATTGTAAGTGAA+AGG | - | chr1_2:8676576-8676595 | Msa0054100:three_prime_UTR | 25.0% |
| !!! | TGAAGTTTTGTAATTGGATT+GGG | - | chr1_2:8677265-8677284 | Msa0054100:intron | 25.0% |
| !!! | TTACTTTGAAATTTAGGGAT+AGG | - | chr1_2:8677421-8677440 | Msa0054100:intron | 25.0% |
| !!! | TACTTTGAAATTTAGGGATA+GGG | - | chr1_2:8677422-8677441 | Msa0054100:intron | 25.0% |
| ! | CTTTGTATACACTTTAATTG+TGG | - | chr1_2:8677832-8677851 | Msa0054100:intron | 25.0% |
| !! | TTGTGGTTATTTCATAAACA+AGG | - | chr1_2:8677849-8677868 | Msa0054100:intron | 25.0% |
| !! | TGTGGTTATTTCATAAACAA+GGG | - | chr1_2:8677850-8677869 | Msa0054100:intron | 25.0% |
| ! | AAAATAAAGAAAACGCACTT+TGG | + | chr1_2:8678239-8678258 | None:intergenic | 25.0% |
| ! | ATGACAAGAAAACATGAATA+AGG | + | chr1_2:8678267-8678286 | None:intergenic | 25.0% |
| !!! | ATTTTTATTGGCTTAAATCG+TGG | - | chr1_2:8678826-8678845 | Msa0054100:five_prime_UTR | 25.0% |
| ! | ATTCCTCTTTGTAGAATATA+AGG | - | chr1_2:8678961-8678980 | Msa0054100:five_prime_UTR | 25.0% |
| ! | TCCATTTCATACAATAATAC+AGG | + | chr1_2:8679295-8679314 | Msa0054110:CDS | 25.0% |
| !! | AACAAAGAGTACAATCAATT+TGG | + | chr1_2:8679351-8679370 | Msa0054110:CDS | 25.0% |
| !!! | ACTCTTTGTTGTTTTAGTTA+TGG | - | chr1_2:8679361-8679380 | Msa0054100:five_prime_UTR | 25.0% |
| !!! | AAACATTTAGTTCTTCTAAC+CGG | + | chr1_2:8679414-8679433 | Msa0054110:CDS | 25.0% |
| !!! | ATAATTGGAATATGTTTTGG+AGG | - | chr1_2:8679439-8679458 | Msa0054100:five_prime_UTR | 25.0% |
| !! | ATCTCTGTTTAATTTACTTG+TGG | - | chr1_2:8679622-8679641 | Msa0054100:five_prime_UTR | 25.0% |
| !! | TCTCTGTTTAATTTACTTGT+GGG | - | chr1_2:8679623-8679642 | Msa0054100:five_prime_UTR | 25.0% |
| !! | GTCAAATGATATCATTTTGT+TGG | - | chr1_2:8679961-8679980 | Msa0054100:five_prime_UTR | 25.0% |
| ! | AAAATATTAACCTAAGCACA+AGG | - | chr1_2:8680209-8680228 | Msa0054100:five_prime_UTR | 25.0% |
| !! | AATTTGAGATATCATCTTTC+AGG | - | chr1_2:8680260-8680279 | Msa0054100:five_prime_UTR | 25.0% |
| ! | ACAAACAATCTCAAAATACA+TGG | + | chr1_2:8680330-8680349 | Msa0054110:three_prime_UTR | 25.0% |
| !!! | ATGTATTTTGAGATTGTTTG+TGG | - | chr1_2:8680329-8680348 | Msa0054100:five_prime_UTR | 25.0% |
| ! | TAATGCAAAATTTGACATAG+TGG | - | chr1_2:8680368-8680387 | Msa0054100:five_prime_UTR | 25.0% |
| CTTCGATTAGAAAGAAAGAA+AGG | + | chr1_2:8676107-8676126 | None:intergenic | 30.0% | |
| AACTTCATACATAGTTCAAC+AGG | - | chr1_2:8676129-8676148 | Msa0054100:three_prime_UTR | 30.0% | |
| TTAATTGCAGAGGATGAATA+CGG | + | chr1_2:8676166-8676185 | None:intergenic | 30.0% | |
| GAGAGAAAAGAAAGAATAGA+AGG | + | chr1_2:8676288-8676307 | None:intergenic | 30.0% | |
| ATTCAGAGTTCAAATTGAAG+AGG | - | chr1_2:8676496-8676515 | Msa0054100:three_prime_UTR | 30.0% | |
| ! | TTTTGGATTTCTCGTTCTTA+CGG | - | chr1_2:8676551-8676570 | Msa0054100:three_prime_UTR | 30.0% |
| TAATTGAGATCAGGGAATTT+AGG | - | chr1_2:8676786-8676805 | Msa0054100:intron | 30.0% | |
| AATTGAGATCAGGGAATTTA+GGG | - | chr1_2:8676787-8676806 | Msa0054100:intron | 30.0% | |
| !! | TGTTGGTGAAGTTTTGTAAT+TGG | - | chr1_2:8677259-8677278 | Msa0054100:intron | 30.0% |
| !! | GTGAAGTTTTGTAATTGGAT+TGG | - | chr1_2:8677264-8677283 | Msa0054100:intron | 30.0% |
| ! | GTAAAGTATCACTATTTGGT+GGG | - | chr1_2:8677333-8677352 | Msa0054100:intron | 30.0% |
| ! | TAAAGTATCACTATTTGGTG+GGG | - | chr1_2:8677334-8677353 | Msa0054100:intron | 30.0% |
| AAAGTAAATGTCTTTGGCTA+AGG | + | chr1_2:8677408-8677427 | None:intergenic | 30.0% | |
| !! | GTAAATAAAAGGCATCAATG+TGG | - | chr1_2:8677680-8677699 | Msa0054100:intron | 30.0% |
| AAATAAATTTCATGTCGGCA+AGG | + | chr1_2:8677758-8677777 | None:intergenic | 30.0% | |
| TTCATAAACAAGGGAGAAAA+AGG | - | chr1_2:8677859-8677878 | Msa0054100:intron | 30.0% | |
| ! | ATCACAGTGACATTTGTTAA+CGG | - | chr1_2:8678049-8678068 | Msa0054100:intron | 30.0% |
| TACCACTGGTAATAATAAGT+AGG | - | chr1_2:8678510-8678529 | Msa0054100:five_prime_UTR | 30.0% | |
| TAATAAGTAACCACATGTGT+CGG | - | chr1_2:8678599-8678618 | Msa0054100:five_prime_UTR | 30.0% | |
| ! | TCCAACACTCACATTTTTAT+TGG | - | chr1_2:8678814-8678833 | Msa0054100:five_prime_UTR | 30.0% |
| GAAATGAGTTTCATTCAAAG+TGG | - | chr1_2:8678865-8678884 | Msa0054100:five_prime_UTR | 30.0% | |
| TCAACACTCATTCTCTTATT+GGG | + | chr1_2:8678911-8678930 | None:intergenic | 30.0% | |
| TTCAACACTCATTCTCTTAT+TGG | + | chr1_2:8678912-8678931 | None:intergenic | 30.0% | |
| AGATTAGGTTAAGTTTGTGT+TGG | - | chr1_2:8678993-8679012 | Msa0054100:five_prime_UTR | 30.0% | |
| GCCTGTATTATTGTATGAAA+TGG | - | chr1_2:8679291-8679310 | Msa0054100:five_prime_UTR | 30.0% | |
| !!! | ATGGTTTTTAAGATGAGTTG+AGG | - | chr1_2:8679321-8679340 | Msa0054100:five_prime_UTR | 30.0% |
| GGAAATGTTTGTATGTTATG+TGG | - | chr1_2:8679588-8679607 | Msa0054100:five_prime_UTR | 30.0% | |
| AACTCGATAATTCAGTTCTA+AGG | + | chr1_2:8679787-8679806 | Msa0054110:intron | 30.0% | |
| ATGGTGAAAATAAAAAGGCT+AGG | + | chr1_2:8679926-8679945 | Msa0054110:CDS | 30.0% | |
| AAGGCATGGTGAAAATAAAA+AGG | + | chr1_2:8679931-8679950 | Msa0054110:CDS | 30.0% | |
| TCATTTGACAGCTTAAAACA+AGG | + | chr1_2:8679950-8679969 | Msa0054110:CDS | 30.0% | |
| CTAAACCAAACTTCAAATGT+AGG | + | chr1_2:8680017-8680036 | Msa0054110:CDS | 30.0% | |
| TTGCAGTACTTAGTATCATA+AGG | + | chr1_2:8680108-8680127 | Msa0054110:CDS | 30.0% | |
| ACACAACAACTATAACTGTT+TGG | + | chr1_2:8680139-8680158 | Msa0054110:exon | 30.0% | |
| ! | TGACATAGTGGAAATTAATG+TGG | - | chr1_2:8680380-8680399 | Msa0054100:five_prime_UTR | 30.0% |
| TCATACATAGTTCAACAGGA+AGG | - | chr1_2:8676133-8676152 | Msa0054100:three_prime_UTR | 35.0% | |
| GAAACTCGACCTAGAATTAA+AGG | + | chr1_2:8676223-8676242 | None:intergenic | 35.0% | |
| ! | AAAGAGAAGCTAGGGTTTTA+AGG | + | chr1_2:8676315-8676334 | None:intergenic | 35.0% |
| !!! | GTAAGTGAAAGGTTTTGAGT+TGG | - | chr1_2:8676587-8676606 | Msa0054100:exon | 35.0% |
| AGTGACGAAATCGTCAATTT+CGG | - | chr1_2:8676746-8676765 | Msa0054100:intron | 35.0% | |
| TAGTGAGAGTAATTGAGATC+AGG | - | chr1_2:8676777-8676796 | Msa0054100:intron | 35.0% | |
| AGTGAGAGTAATTGAGATCA+GGG | - | chr1_2:8676778-8676797 | Msa0054100:intron | 35.0% | |
| ! | ATTTAGGGTTTGAAGGAGTT+TGG | - | chr1_2:8676802-8676821 | Msa0054100:intron | 35.0% |
| CAGAGAAGAATGATTGTTGT+TGG | - | chr1_2:8676877-8676896 | Msa0054100:intron | 35.0% | |
| AAAGGAAAGCTGAATCAGAA+CGG | - | chr1_2:8677123-8677142 | Msa0054100:intron | 35.0% | |
| ! | TGGGGTAAAGTATCACTATT+TGG | - | chr1_2:8677329-8677348 | Msa0054100:intron | 35.0% |
| ! | GGTAAAGTATCACTATTTGG+TGG | - | chr1_2:8677332-8677351 | Msa0054100:intron | 35.0% |
| ATCTTGAGAGTAGCTAATTG+AGG | - | chr1_2:8677365-8677384 | Msa0054100:intron | 35.0% | |
| TCTTGAGAGTAGCTAATTGA+GGG | - | chr1_2:8677366-8677385 | Msa0054100:intron | 35.0% | |
| GGCAAGGATATAATAAAAGC+GGG | + | chr1_2:8677742-8677761 | None:intergenic | 35.0% | |
| CGGCAAGGATATAATAAAAG+CGG | + | chr1_2:8677743-8677762 | None:intergenic | 35.0% | |
| !!! | TTGTTTTTTTTCCTTGGTGC+AGG | - | chr1_2:8677776-8677795 | Msa0054100:intron | 35.0% |
| CCAGAATCATCTTCGTTATA+CGG | + | chr1_2:8678114-8678133 | None:intergenic | 35.0% | |
| ! | AACGAAGATGATTCTGGAAA+AGG | - | chr1_2:8678117-8678136 | Msa0054100:CDS | 35.0% |
| ! | ACGAAGATGATTCTGGAAAA+GGG | - | chr1_2:8678118-8678137 | Msa0054100:CDS | 35.0% |
| GAAACATTTGTTCAGTCTCA+AGG | + | chr1_2:8678150-8678169 | None:intergenic | 35.0% | |
| AACAAATGTTTCGTGAAGCA+GGG | - | chr1_2:8678158-8678177 | Msa0054100:CDS | 35.0% | |
| TCTTCATCAGGAATGATAAC+AGG | + | chr1_2:8678193-8678212 | None:intergenic | 35.0% | |
| AACGTGAATCAGAACAAATG+AGG | + | chr1_2:8678345-8678364 | None:intergenic | 35.0% | |
| TCTGATTCACGTTTCTAACA+TGG | - | chr1_2:8678352-8678371 | Msa0054100:CDS | 35.0% | |
| CTATGATGTACAAATACCAC+TGG | - | chr1_2:8678496-8678515 | Msa0054100:five_prime_UTR | 35.0% | |
| CTCCTACTTATTATTACCAG+TGG | + | chr1_2:8678515-8678534 | None:intergenic | 35.0% | |
| CACTGGTAATAATAAGTAGG+AGG | - | chr1_2:8678513-8678532 | Msa0054100:five_prime_UTR | 35.0% | |
| GTTTGGTATCTGTACTTCAT+AGG | + | chr1_2:8678540-8678559 | None:intergenic | 35.0% | |
| !! | GTGTCGGTGTTACATAAATT+AGG | - | chr1_2:8678676-8678695 | Msa0054100:five_prime_UTR | 35.0% |
| !! | TTTGTTTGCGTTTTAGTGGA+TGG | - | chr1_2:8678738-8678757 | Msa0054100:five_prime_UTR | 35.0% |
| GCCAATAAAAATGTGAGTGT+TGG | + | chr1_2:8678818-8678837 | None:intergenic | 35.0% | |
| !! | TTTATTGGCTTAAATCGTGG+TGG | - | chr1_2:8678829-8678848 | Msa0054100:five_prime_UTR | 35.0% |
| ATGAGTTTCATTCAAAGTGG+TGG | - | chr1_2:8678868-8678887 | Msa0054100:five_prime_UTR | 35.0% | |
| TGAGTTTCATTCAAAGTGGT+GGG | - | chr1_2:8678869-8678888 | Msa0054100:five_prime_UTR | 35.0% | |
| TTCTACAAAGAGGAATGCTA+GGG | + | chr1_2:8678957-8678976 | None:intergenic | 35.0% | |
| ATTCTACAAAGAGGAATGCT+AGG | + | chr1_2:8678958-8678977 | None:intergenic | 35.0% | |
| CCACCTTATATTCTACAAAG+AGG | + | chr1_2:8678967-8678986 | None:intergenic | 35.0% | |
| CCTCTTTGTAGAATATAAGG+TGG | - | chr1_2:8678964-8678983 | Msa0054100:five_prime_UTR | 35.0% | |
| ATAAGGTGGTTCAAGAGATT+AGG | - | chr1_2:8678978-8678997 | Msa0054100:five_prime_UTR | 35.0% | |
| TTGGATATGTCCATAAACTG+TGG | + | chr1_2:8679024-8679043 | Msa0054110:five_prime_UTR | 35.0% | |
| GATGTCTGGAAGAACATATT+TGG | + | chr1_2:8679109-8679128 | Msa0054110:CDS | 35.0% | |
| ATTAAGGATAAGCAGATGTC+TGG | + | chr1_2:8679123-8679142 | Msa0054110:CDS | 35.0% | |
| !!! | ATATGTTTTGGAGGAATTCG+AGG | - | chr1_2:8679448-8679467 | Msa0054100:five_prime_UTR | 35.0% |
| GAATTCGAGGTTTCACTATA+AGG | - | chr1_2:8679461-8679480 | Msa0054100:five_prime_UTR | 35.0% | |
| !! | GGAACTGTTGTGTATTTTTG+TGG | - | chr1_2:8679482-8679501 | Msa0054100:five_prime_UTR | 35.0% |
| GAAGAAGCAATAGCTAACAA+TGG | - | chr1_2:8679685-8679704 | Msa0054100:five_prime_UTR | 35.0% | |
| ! | TGGTTTAGCTTATTAACCAC+TGG | - | chr1_2:8679705-8679724 | Msa0054100:five_prime_UTR | 35.0% |
| ! | GGTTTAGCTTATTAACCACT+GGG | - | chr1_2:8679706-8679725 | Msa0054100:five_prime_UTR | 35.0% |
| ! | CAATGCCTACATTTGAAGTT+TGG | - | chr1_2:8680009-8680028 | Msa0054100:five_prime_UTR | 35.0% |
| TTAGTGTTCTTGTGATTGAG+AGG | - | chr1_2:8680033-8680052 | Msa0054100:five_prime_UTR | 35.0% | |
| TAGTGTTCTTGTGATTGAGA+GGG | - | chr1_2:8680034-8680053 | Msa0054100:five_prime_UTR | 35.0% | |
| ! | TTTCAGTTTTCCTTGTGCTT+AGG | + | chr1_2:8680222-8680241 | Msa0054110:three_prime_UTR | 35.0% |
| !!! | TTTTGAGATTGTTTGTGGCT+TGG | - | chr1_2:8680334-8680353 | Msa0054100:five_prime_UTR | 35.0% |
| ACCAGTAGAGAATTATGAGT+TGG | + | chr1_2:8680411-8680430 | Msa0054110:three_prime_UTR | 35.0% | |
| ! | ATGCAACAATTTAGAACCGT+TGG | - | chr1_2:8680455-8680474 | Msa0054100:five_prime_UTR | 35.0% |
| ! | TGCAACAATTTAGAACCGTT+GGG | - | chr1_2:8680456-8680475 | Msa0054100:five_prime_UTR | 35.0% |
| GCGAACCTTCCTTTAATTCT+AGG | - | chr1_2:8676211-8676230 | Msa0054100:three_prime_UTR | 40.0% | |
| CTCGACCTAGAATTAAAGGA+AGG | + | chr1_2:8676219-8676238 | None:intergenic | 40.0% | |
| GTGACGAAATCGTCAATTTC+GGG | - | chr1_2:8676747-8676766 | Msa0054100:intron | 40.0% | |
| TGACGAAATCGTCAATTTCG+GGG | - | chr1_2:8676748-8676767 | Msa0054100:intron | 40.0% | |
| ! | TCAGGGAATTTAGGGTTTGA+AGG | - | chr1_2:8676795-8676814 | Msa0054100:intron | 40.0% |
| ! | ATTGTTGTTGGCTGTTGTTG+TGG | - | chr1_2:8676889-8676908 | Msa0054100:intron | 40.0% |
| TGGAATCACATGTGAGACAA+AGG | - | chr1_2:8677105-8677124 | Msa0054100:intron | 40.0% | |
| AATGTGTGGTTGTGGTGATT+GGG | - | chr1_2:8677310-8677329 | Msa0054100:intron | 40.0% | |
| ! | TATCACTATTTGGTGGGGTA+GGG | - | chr1_2:8677339-8677358 | Msa0054100:intron | 40.0% |
| AATTTAGGGATAGGGATGCA+AGG | - | chr1_2:8677430-8677449 | Msa0054100:intron | 40.0% | |
| TACTGGTGGCATATTCTCTT+TGG | - | chr1_2:8677705-8677724 | Msa0054100:intron | 40.0% | |
| ! | CTGTTTTCTTGCGTAATAGC+AGG | - | chr1_2:8677808-8677827 | Msa0054100:intron | 40.0% |
| GAAATTCCTATCGAGAGTGA+AGG | - | chr1_2:8677889-8677908 | Msa0054100:intron | 40.0% | |
| ACAAATGTCACTGTGATCTG+TGG | + | chr1_2:8678046-8678065 | None:intergenic | 40.0% | |
| ! | AGTGACATTTGTTAACGGTG+TGG | - | chr1_2:8678054-8678073 | Msa0054100:CDS | 40.0% |
| ATCTTCGTTATACGGTGAAC+CGG | + | chr1_2:8678106-8678125 | None:intergenic | 40.0% | |
| CCGTATAACGAAGATGATTC+TGG | - | chr1_2:8678111-8678130 | Msa0054100:CDS | 40.0% | |
| GAACAAATGTTTCGTGAAGC+AGG | - | chr1_2:8678157-8678176 | Msa0054100:CDS | 40.0% | |
| ACAAATGTTTCGTGAAGCAG+GGG | - | chr1_2:8678159-8678178 | Msa0054100:CDS | 40.0% | |
| TGTTGAGAGAGTTCTTCATC+AGG | + | chr1_2:8678205-8678224 | None:intergenic | 40.0% | |
| CAATGTAGCTGAGAATGAGT+TGG | - | chr1_2:8678418-8678437 | Msa0054100:five_prime_UTR | 40.0% | |
| CATTGTCGATGTGTTGTGTT+TGG | + | chr1_2:8678557-8678576 | None:intergenic | 40.0% | |
| CAAACACAACACATCGACAA+TGG | - | chr1_2:8678555-8678574 | Msa0054100:five_prime_UTR | 40.0% | |
| TCAAACACACCCTTAATGTG+AGG | - | chr1_2:8678654-8678673 | Msa0054100:five_prime_UTR | 40.0% | |
| ! | GTCTGAGTGTTATTGTTGAG+AGG | - | chr1_2:8678710-8678729 | Msa0054100:five_prime_UTR | 40.0% |
| !!! | CTGCTTTGTTTGCGTTTTAG+TGG | - | chr1_2:8678734-8678753 | Msa0054100:five_prime_UTR | 40.0% |
| !! | GTTGGTTTGACCACAGTTTA+TGG | - | chr1_2:8679011-8679030 | Msa0054100:five_prime_UTR | 40.0% |
| GGACATATCCAAGCTATTGT+CGG | - | chr1_2:8679032-8679051 | Msa0054100:five_prime_UTR | 40.0% | |
| TGTATGAAATGGAAGAGCGA+TGG | - | chr1_2:8679302-8679321 | Msa0054100:five_prime_UTR | 40.0% | |
| TCCATGTGCATCATAAGTTG+TGG | - | chr1_2:8679385-8679404 | Msa0054100:five_prime_UTR | 40.0% | |
| CCATGTGCATCATAAGTTGT+GGG | - | chr1_2:8679386-8679405 | Msa0054100:five_prime_UTR | 40.0% | |
| TTGGCAGTGTAGTTGTTCTA+TGG | - | chr1_2:8679566-8679585 | Msa0054100:five_prime_UTR | 40.0% | |
| TGGCAGTGTAGTTGTTCTAT+GGG | - | chr1_2:8679567-8679586 | Msa0054100:five_prime_UTR | 40.0% | |
| TAACCACTGGGAATTGTTCT+AGG | - | chr1_2:8679718-8679737 | Msa0054100:five_prime_UTR | 40.0% | |
| AAACCTAGAACAATTCCCAG+TGG | + | chr1_2:8679724-8679743 | Msa0054110:intron | 40.0% | |
| !! | TTCAGTTCTAAGGAACAGCA+CGG | + | chr1_2:8679777-8679796 | Msa0054110:intron | 40.0% |
| TGACAGCTTAAAACAAGGCA+TGG | + | chr1_2:8679945-8679964 | Msa0054110:CDS | 40.0% | |
| ATTGAGAGGGTGATTTCTGT+CGG | - | chr1_2:8680047-8680066 | Msa0054100:five_prime_UTR | 40.0% | |
| GCCAACTCATAATTCTCTAC+TGG | - | chr1_2:8680407-8680426 | Msa0054100:five_prime_UTR | 40.0% | |
| ! | ATGACGGAGATATCGTACTG+CGG | + | chr1_2:8676400-8676419 | None:intergenic | 45.0% |
| GTAGTGTTCGTGTTCGTGTT+CGG | - | chr1_2:8676632-8676651 | Msa0054100:intron | 45.0% | |
| GACGATTTCGTCACTGTCAA+CGG | + | chr1_2:8676741-8676760 | None:intergenic | 45.0% | |
| AGAGTGGATGTCATGATCAC+AGG | - | chr1_2:8676965-8676984 | Msa0054100:intron | 45.0% | |
| TTTGTTGGCAGCATGGATGT+TGG | - | chr1_2:8677085-8677104 | Msa0054100:intron | 45.0% | |
| !! | ACGGCAGAATAGTGTTGCTT+TGG | - | chr1_2:8677142-8677161 | Msa0054100:intron | 45.0% |
| !! | TGTTGCTTTGGATGACTTGC+AGG | - | chr1_2:8677154-8677173 | Msa0054100:intron | 45.0% |
| !! | TGAGAGTGTTGTGAGTGTGT+TGG | - | chr1_2:8677242-8677261 | Msa0054100:intron | 45.0% |
| ! | TTGGATTGGGAGTGTAGAAG+AGG | - | chr1_2:8677278-8677297 | Msa0054100:intron | 45.0% |
| GAATGTGTGGTTGTGGTGAT+TGG | - | chr1_2:8677309-8677328 | Msa0054100:intron | 45.0% | |
| ATGTGTGGTTGTGGTGATTG+GGG | - | chr1_2:8677311-8677330 | Msa0054100:intron | 45.0% | |
| ! | GTATCACTATTTGGTGGGGT+AGG | - | chr1_2:8677338-8677357 | Msa0054100:intron | 45.0% |
| ! | ATCACTATTTGGTGGGGTAG+GGG | - | chr1_2:8677340-8677359 | Msa0054100:intron | 45.0% |
| ! | AAGGCATCAATGTGGCATAC+TGG | - | chr1_2:8677688-8677707 | Msa0054100:intron | 45.0% |
| AGAAAACACAACCTGCACCA+AGG | + | chr1_2:8677790-8677809 | None:intergenic | 45.0% | |
| TCCACGAACTGCATCATGTA+TGG | - | chr1_2:8677931-8677950 | Msa0054100:intron | 45.0% | |
| TCCATACATGATGCAGTTCG+TGG | + | chr1_2:8677935-8677954 | None:intergenic | 45.0% | |
| TGAGGTGAAACGTGGAAATG+TGG | - | chr1_2:8678012-8678031 | Msa0054100:intron | 45.0% | |
| ATGTCACTGTGATCTGTGGT+GGG | + | chr1_2:8678042-8678061 | None:intergenic | 45.0% | |
| AATGTCACTGTGATCTGTGG+TGG | + | chr1_2:8678043-8678062 | None:intergenic | 45.0% | |
| TGTCGGACATCAAAATGCGT+CGG | - | chr1_2:8678622-8678641 | Msa0054100:five_prime_UTR | 45.0% | |
| ACACCCTTAATGTGAGGTGT+CGG | - | chr1_2:8678660-8678679 | Msa0054100:five_prime_UTR | 45.0% | |
| ACACCGACACCTCACATTAA+GGG | + | chr1_2:8678666-8678685 | None:intergenic | 45.0% | |
| AACACCGACACCTCACATTA+AGG | + | chr1_2:8678667-8678686 | None:intergenic | 45.0% | |
| !! | CAAAGTGGTGGGTCATACAA+TGG | - | chr1_2:8678880-8678899 | Msa0054100:five_prime_UTR | 45.0% |
| AACGACTTCCGACAATAGCT+TGG | + | chr1_2:8679043-8679062 | Msa0054110:five_prime_UTR | 45.0% | |
| CCCACAACTTATGATGCACA+TGG | + | chr1_2:8679389-8679408 | Msa0054110:CDS | 45.0% | |
| GCATCATAAGTTGTGGGATC+CGG | - | chr1_2:8679392-8679411 | Msa0054100:five_prime_UTR | 45.0% | |
| TTCTTCTCCTCTGCTTTCCT+CGG | + | chr1_2:8679671-8679690 | Msa0054110:CDS | 45.0% | |
| CAGCAGATGCGAGATAAAAC+GGG | + | chr1_2:8679750-8679769 | Msa0054110:intron | 45.0% | |
| GCAGCAGATGCGAGATAAAA+CGG | + | chr1_2:8679751-8679770 | Msa0054110:intron | 45.0% | |
| GATGTTCACACATAGCTTCG+TGG | + | chr1_2:8679904-8679923 | Msa0054110:CDS | 45.0% | |
| TTTGATGCCAAGCAGCTACA+TGG | - | chr1_2:8680158-8680177 | Msa0054100:five_prime_UTR | 45.0% | |
| ATGATCACCATGTAGCTGCT+TGG | + | chr1_2:8680168-8680187 | Msa0054110:three_prime_UTR | 45.0% | |
| GCAGCTACATGGTGATCATA+TGG | - | chr1_2:8680169-8680188 | Msa0054100:five_prime_UTR | 45.0% | |
| GTACTGCGGTTACCAAACGA+CGG | + | chr1_2:8676386-8676405 | None:intergenic | 50.0% | |
| ACCAGACGGAAACGTGATGA+CGG | + | chr1_2:8676416-8676435 | None:intergenic | 50.0% | |
| GAGGTTGGAGTTGTACCAGA+CGG | + | chr1_2:8676430-8676449 | None:intergenic | 50.0% | |
| ACAACTCCAACCTCCATCGA+CGG | - | chr1_2:8676436-8676455 | Msa0054100:three_prime_UTR | 50.0% | |
| TTAGGTATCTTCGCCGTCGA+TGG | + | chr1_2:8676452-8676471 | None:intergenic | 50.0% | |
| !!! | GTTTTGCTCTGAGACTGCAC+CGG | - | chr1_2:8676660-8676679 | Msa0054100:intron | 50.0% |
| CAACGGTAAAACAGACACGC+CGG | + | chr1_2:8676724-8676743 | None:intergenic | 50.0% | |
| TGAAGGAGTTTGGAGAAGCC+AGG | - | chr1_2:8676812-8676831 | Msa0054100:intron | 50.0% | |
| AAGAAGCAGAAGCTGCTTCC+TGG | + | chr1_2:8676833-8676852 | None:intergenic | 50.0% | |
| AGCAGCTTCTGCTTCTTCGT+TGG | - | chr1_2:8676836-8676855 | Msa0054100:intron | 50.0% | |
| AGCTTCTGCTTCTTCGTTGG+TGG | - | chr1_2:8676839-8676858 | Msa0054100:intron | 50.0% | |
| ! | GTTGTTGGCTGTTGTTGTGG+TGG | - | chr1_2:8676892-8676911 | Msa0054100:intron | 50.0% |
| GATACATAGAGCAGCTGCGT+CGG | - | chr1_2:8676989-8677008 | Msa0054100:intron | 50.0% | |
| CCAAGTCTGTGAACAAGCTC+CGG | + | chr1_2:8677033-8677052 | None:intergenic | 50.0% | |
| ! | TTGGGAGTGTAGAAGAGGAG+AGG | - | chr1_2:8677283-8677302 | Msa0054100:intron | 50.0% |
| GAGTGTAGAAGAGGAGAGGA+GGG | - | chr1_2:8677287-8677306 | Msa0054100:intron | 50.0% | |
| CTAATTGAGGGATGACCCGT+GGG | - | chr1_2:8677378-8677397 | Msa0054100:intron | 50.0% | |
| AGGGATGCAAGGACAGAAAG+AGG | - | chr1_2:8677441-8677460 | Msa0054100:intron | 50.0% | |
| GGGATGCAAGGACAGAAAGA+GGG | - | chr1_2:8677442-8677461 | Msa0054100:intron | 50.0% | |
| !! | AGGGACTCTTCTGAGATGAG+TGG | - | chr1_2:8677461-8677480 | Msa0054100:intron | 50.0% |
| GCATCAATGTGGCATACTGG+TGG | - | chr1_2:8677691-8677710 | Msa0054100:intron | 50.0% | |
| ACTCGACCTTCACTCTCGAT+AGG | + | chr1_2:8677898-8677917 | None:intergenic | 50.0% | |
| AGCGCAATGCAACTCACGAA+AGG | - | chr1_2:8677961-8677980 | Msa0054100:intron | 50.0% | |
| ACGTTTCACCTCAACTTCGC+AGG | + | chr1_2:8678005-8678024 | None:intergenic | 50.0% | |
| TGCGAAGTTGAGGTGAAACG+TGG | - | chr1_2:8678004-8678023 | Msa0054100:intron | 50.0% | |
| GTTCGATGCAACATCAACGC+CGG | - | chr1_2:8678084-8678103 | Msa0054100:CDS | 50.0% | |
| TTCGTGAAGCAGGGGAACAA+TGG | - | chr1_2:8678167-8678186 | Msa0054100:CDS | 50.0% | |
| GAACTCTCTCAACATGCACC+TGG | - | chr1_2:8678211-8678230 | Msa0054100:CDS | 50.0% | |
| !! | AGAAAACGCACTTTGGTGCC+AGG | + | chr1_2:8678232-8678251 | None:intergenic | 50.0% |
| ! | GTAACCACATGTGTCGGTGT+CGG | - | chr1_2:8678605-8678624 | Msa0054100:five_prime_UTR | 50.0% |
| !! | TCGTGGTGGATCTCACACTT+TGG | - | chr1_2:8678843-8678862 | Msa0054100:five_prime_UTR | 50.0% |
| TGTTTCCTTTCTTCCAGCCG+AGG | - | chr1_2:8679651-8679670 | Msa0054100:five_prime_UTR | 50.0% | |
| GGCGGTGGAAAGAGAAGCTA+GGG | + | chr1_2:8676323-8676342 | None:intergenic | 55.0% | |
| TCTCTTTCCACCGCCGTCAT+CGG | - | chr1_2:8676328-8676347 | Msa0054100:three_prime_UTR | 55.0% | |
| TCCGTCATCACGTTTCCGTC+TGG | - | chr1_2:8676412-8676431 | Msa0054100:three_prime_UTR | 55.0% | |
| GTGTTCGTGTTCGTGTTCGG+TGG | - | chr1_2:8676635-8676654 | Msa0054100:intron | 55.0% | |
| ! | TTCGTGTTCGTGTTCGGTGG+TGG | - | chr1_2:8676638-8676657 | Msa0054100:intron | 55.0% |
| GTTGGCTGTTGTTGTGGTGG+TGG | - | chr1_2:8676895-8676914 | Msa0054100:intron | 55.0% | |
| !! | GCTGTTGTTGTGGTGGTGGA+AGG | - | chr1_2:8676899-8676918 | Msa0054100:intron | 55.0% |
| !! | GTTGTTGTGGTGGTGGAAGG+TGG | - | chr1_2:8676902-8676921 | Msa0054100:intron | 55.0% |
| !! | GAGCTAGTGGGTTAGCAGAG+TGG | - | chr1_2:8676949-8676968 | Msa0054100:intron | 55.0% |
| ! | CCGGAGCTTGTTCACAGACT+TGG | - | chr1_2:8677030-8677049 | Msa0054100:intron | 55.0% |
| AGACTTGGCAGAGTGTGACG+CGG | - | chr1_2:8677045-8677064 | Msa0054100:intron | 55.0% | |
| !! | AGGCGAGTTTGTTGGCAGCA+TGG | - | chr1_2:8677078-8677097 | Msa0054100:intron | 55.0% |
| GGAGTGTAGAAGAGGAGAGG+AGG | - | chr1_2:8677286-8677305 | Msa0054100:intron | 55.0% | |
| AGAGGAGAGGAGGGAATGTG+TGG | - | chr1_2:8677296-8677315 | Msa0054100:intron | 55.0% | |
| GAGGAGGGAATGTGTGGTTG+TGG | - | chr1_2:8677302-8677321 | Msa0054100:intron | 55.0% | |
| GCTAATTGAGGGATGACCCG+TGG | - | chr1_2:8677377-8677396 | Msa0054100:intron | 55.0% | |
| TTTGGCTAAGGCTCACCCAC+GGG | + | chr1_2:8677396-8677415 | None:intergenic | 55.0% | |
| CTTTGGCTAAGGCTCACCCA+CGG | + | chr1_2:8677397-8677416 | None:intergenic | 55.0% | |
| AAACCCTGCCTGCGAAGTTG+AGG | - | chr1_2:8677994-8678013 | Msa0054100:intron | 55.0% | |
| TCACCTCAACTTCGCAGGCA+GGG | + | chr1_2:8678000-8678019 | None:intergenic | 55.0% | |
| TTCACCTCAACTTCGCAGGC+AGG | + | chr1_2:8678001-8678020 | None:intergenic | 55.0% | |
| ATGTCCGACACCGACACATG+TGG | + | chr1_2:8678612-8678631 | None:intergenic | 55.0% | |
| GCTTTCCTCGGCTGGAAGAA+AGG | + | chr1_2:8679659-8679678 | Msa0054110:CDS | 55.0% | |
| CGGCGGTGGAAAGAGAAGCT+AGG | + | chr1_2:8676324-8676343 | None:intergenic | 60.0% | |
| ATCGGAACCGCCACCGTCAT+CGG | - | chr1_2:8676346-8676365 | Msa0054100:three_prime_UTR | 60.0% | |
| CCAAACGACGGCGACAGAGA+CGG | + | chr1_2:8676374-8676393 | None:intergenic | 60.0% | |
| TCTTCGCCGTCGATGGAGGT+TGG | + | chr1_2:8676445-8676464 | None:intergenic | 60.0% | |
| GGTATCTTCGCCGTCGATGG+AGG | + | chr1_2:8676449-8676468 | None:intergenic | 60.0% | |
| ! | GTGCCGGGACTGTTTTGCTC+CGG | - | chr1_2:8676702-8676721 | Msa0054100:intron | 60.0% |
| ACGCCGGAGCAAAACAGTCC+CGG | + | chr1_2:8676708-8676727 | None:intergenic | 60.0% | |
| !! | TGGTGGTGGAAGGTGGTGAG+AGG | - | chr1_2:8676909-8676928 | Msa0054100:intron | 60.0% |
| !! | GGTGGTGGAAGGTGGTGAGA+GGG | - | chr1_2:8676910-8676929 | Msa0054100:intron | 60.0% |
| TGGTGAGAGGGACACGTTCG+TGG | - | chr1_2:8676922-8676941 | Msa0054100:intron | 60.0% | |
| TGAGAGGGACACGTTCGTGG+CGG | - | chr1_2:8676925-8676944 | Msa0054100:intron | 60.0% | |
| GCTTTGCAGGTGACGTGAGC+CGG | - | chr1_2:8677011-8677030 | Msa0054100:intron | 60.0% | |
| CTTCCAGCCGAGGAAAGCAG+AGG | - | chr1_2:8679661-8679680 | Msa0054100:five_prime_UTR | 60.0% | |
| TCTCCTCTGCTTTCCTCGGC+TGG | + | chr1_2:8679667-8679686 | Msa0054110:CDS | 60.0% | |
| ! | GACGGTGGCGGTTCCGATGA+CGG | + | chr1_2:8676344-8676363 | None:intergenic | 65.0% |
| !! | GACAGAGACGGCGCCGATGA+CGG | + | chr1_2:8676362-8676381 | None:intergenic | 65.0% |
| CCGTCTCTGTCGCCGTCGTT+TGG | - | chr1_2:8676371-8676390 | Msa0054100:three_prime_UTR | 65.0% | |
| CACCGGAACGACGCCATCTG+CGG | - | chr1_2:8676677-8676696 | Msa0054100:intron | 65.0% | |
| CACCGCAGATGGCGTCGTTC+CGG | + | chr1_2:8676682-8676701 | None:intergenic | 65.0% | |
| GTTCGTGGCGGCGAGCTAGT+GGG | - | chr1_2:8676937-8676956 | Msa0054100:intron | 65.0% | |
| !! | AGCAGCTGCGTCGGCTTTGC+AGG | - | chr1_2:8676998-8677017 | Msa0054100:intron | 65.0% |
| CTTGGCAGAGTGTGACGCGG+TGG | - | chr1_2:8677048-8677067 | Msa0054100:intron | 65.0% | |
| ! | AGAGTGTGACGCGGTGGTGG+CGG | - | chr1_2:8677054-8677073 | Msa0054100:intron | 65.0% |
| ! | GTGGCGGGAGGCGAGTTTGT+TGG | - | chr1_2:8677070-8677089 | Msa0054100:intron | 65.0% |
| ! | GGTGGCGGTTCCGATGACGG+CGG | + | chr1_2:8676341-8676360 | None:intergenic | 70.0% |
| !! | AGAGACGGCGCCGATGACGG+TGG | + | chr1_2:8676359-8676378 | None:intergenic | 70.0% |
| CGGAACGACGCCATCTGCGG+TGG | - | chr1_2:8676680-8676699 | Msa0054100:intron | 70.0% | |
| GACGCCATCTGCGGTGGTGC+CGG | - | chr1_2:8676686-8676705 | Msa0054100:intron | 70.0% | |
| ACGCCATCTGCGGTGGTGCC+GGG | - | chr1_2:8676687-8676706 | Msa0054100:intron | 70.0% | |
| AGTCCCGGCACCACCGCAGA+TGG | + | chr1_2:8676693-8676712 | None:intergenic | 70.0% | |
| CGTTCGTGGCGGCGAGCTAG+TGG | - | chr1_2:8676936-8676955 | Msa0054100:intron | 70.0% | |
| GGCAGAGTGTGACGCGGTGG+TGG | - | chr1_2:8677051-8677070 | Msa0054100:intron | 70.0% | |
| ! | GAGTGTGACGCGGTGGTGGC+GGG | - | chr1_2:8677055-8677074 | Msa0054100:intron | 70.0% |
| ! | GGCGGTTCCGATGACGGCGG+TGG | + | chr1_2:8676338-8676357 | None:intergenic | 75.0% |
| !! | GACGGCGCCGATGACGGTGG+CGG | + | chr1_2:8676356-8676375 | None:intergenic | 75.0% |
| !! | TGTGACGCGGTGGTGGCGGG+AGG | - | chr1_2:8677058-8677077 | Msa0054100:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 8675803 | 8680490 | 8675803 | ID=Msa0054100;Name=Msa0054100 |
| chr1_2 | mRNA | 8675803 | 8680490 | 8675803 | ID=Msa0054100-mRNA-1;Parent=Msa0054100;Name=Msa0054100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=2081|1|1|1|1|1|2|793|128 |
| chr1_2 | exon | 8675803 | 8676625 | 8675803 | ID=Msa0054100-mRNA-1:exon:3132;Parent=Msa0054100-mRNA-1 |
| chr1_2 | exon | 8678053 | 8680490 | 8678053 | ID=Msa0054100-mRNA-1:exon:3131;Parent=Msa0054100-mRNA-1 |
| chr1_2 | five_prime_UTR | 8678410 | 8680490 | 8678410 | ID=Msa0054100-mRNA-1:five_prime_utr;Parent=Msa0054100-mRNA-1 |
| chr1_2 | CDS | 8678053 | 8678409 | 8678053 | ID=Msa0054100-mRNA-1:cds;Parent=Msa0054100-mRNA-1 |
| chr1_2 | CDS | 8676596 | 8676625 | 8676596 | ID=Msa0054100-mRNA-1:cds;Parent=Msa0054100-mRNA-1 |
| chr1_2 | three_prime_UTR | 8675803 | 8676595 | 8675803 | ID=Msa0054100-mRNA-1:three_prime_utr;Parent=Msa0054100-mRNA-1 |
| Gene Sequence |
| Protein sequence |
