AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268960 MtrunA17_Chr4g0016701 100.000 217 0 0 410 626 29 245 1.17e-151 437
Msa0268960 MtrunA17_CPg0492981 100.000 217 0 0 410 626 29 245 1.17e-151 437
Msa0268960 MtrunA17_Chr4g0015611 100.000 217 0 0 410 626 29 245 1.17e-151 437
Msa0268960 MtrunA17_CPg0493001 85.612 278 32 2 1 275 1098 1370 1.24e-146 459
Msa0268960 MtrunA17_Chr4g0016671 85.612 278 32 2 1 275 1098 1370 1.24e-146 459
Msa0268960 MtrunA17_Chr4g0015591 99.038 208 2 0 1 208 490 697 3.11e-136 414
Msa0268960 MtrunA17_Chr3g0088491 93.056 216 10 1 411 626 4 214 4.98e-125 368
Msa0268960 MtrunA17_CPg0492991 66.820 217 36 2 230 410 12 228 2.85e-86 269
Msa0268960 MtrunA17_Chr4g0015601 66.820 217 36 2 230 410 12 228 3.58e-86 268
Msa0268960 MtrunA17_Chr7g0275151 73.494 166 11 1 461 626 2 134 1.78e-73 232
Msa0268960 MtrunA17_Chr4g0060751 68.519 162 5 1 465 626 14 129 8.78e-62 201
Msa0268960 MtrunA17_Chr7g0275181 82.456 114 20 0 133 246 1 114 2.87e-56 186
Msa0268960 MtrunA17_Chr7g0243011 92.683 82 6 0 144 225 1 82 6.79e-45 155
Msa0268960 MtrunA17_Chr4g0016681 97.059 68 2 0 230 297 12 79 2.59e-42 147
Msa0268960 MtrunA17_Chr4g0016691 90.789 76 7 0 335 410 50 125 5.46e-40 142
Msa0268960 MtrunA17_Chr7g0275161 89.855 69 7 0 342 410 21 89 6.66e-36 130
Msa0268960 MtrunA17_Chr7g0275171 64.286 98 25 1 230 327 12 99 5.25e-35 127
Msa0268960 MtrunA17_Chr6g0460191 75.269 93 23 0 534 626 9 101 6.67e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268960 ATCG00170.1 90.749 227 21 0 2 228 1092 1318 3.38e-134 426
Msa0268960 ATCG00150.1 94.009 217 13 0 410 626 33 249 4.04e-130 382
Msa0268960 ATCG00160.1 61.233 227 32 4 230 410 12 228 1.60e-81 257

Find 119 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTATACCTGTTATGTTTC+TGG 0.052609 2_2:-70462303 Msa0268960:CDS
ATCTCATTTGGAAACATATC+TGG 0.181531 2_2:-70463430 Msa0268960:CDS
TAATTTCGATATGTCTATTA+TGG 0.208042 2_2:+70464585 None:intergenic
TCTAATATCTGTTCCACTTT+TGG 0.236437 2_2:+70464794 None:intergenic
CTAAGATGTTAATCGGTAAA+AGG 0.238850 2_2:+70462429 None:intergenic
GGTCCGTGGGTTCCGTTTAT+TGG 0.248543 2_2:-70462665 Msa0268960:CDS
TTACGCTTTGCCGATATAAA+AGG 0.251568 2_2:+70463768 None:intergenic
TGAAATACCCGCATAGAAAT+AGG 0.255569 2_2:+70462499 None:intergenic
ATGGAAGCTGGAGTTCATTT+TGG 0.255790 2_2:-70463825 Msa0268960:CDS
GCTCCTGGAGTCGCCAAATA+TGG 0.258399 2_2:+70464917 None:intergenic
CCTGGGATCGATAAACCTTT+TGG 0.276582 2_2:+70464618 None:intergenic
CCTATACCTGTTATGTTTCT+GGG 0.293135 2_2:-70462302 Msa0268960:CDS
CAAGAGACAATTATCTCATT+TGG 0.294663 2_2:-70463442 Msa0268960:CDS
TGTTACCGAGCTTTATTATT+GGG 0.299555 2_2:-70464437 Msa0268960:CDS
TTGTTACCGAGCTTTATTAT+TGG 0.301429 2_2:-70464438 Msa0268960:CDS
AGCGCAAAGTCGTATTTCTT+TGG 0.301847 2_2:-70464651 Msa0268960:CDS
AAGATCGGCTAACCCATATT+TGG 0.317195 2_2:-70464930 Msa0268960:CDS
TTTAGCAAAAGCCGCTCTTC+GGG 0.336042 2_2:-70464345 Msa0268960:CDS
CTCAAGTACTTATTACCTCT+TGG 0.341108 2_2:-70462829 Msa0268960:CDS
ATTCCTTGGGGATTCTTGAT+TGG 0.341306 2_2:-70464689 Msa0268960:CDS
ATCAACGATTATTACAATAT+CGG 0.341941 2_2:+70463381 None:intergenic
CTCTTCGGGGTCGTATTGAT+TGG 0.345022 2_2:-70464331 Msa0268960:CDS
GATAAAGGATTTCTCCATAA+TGG 0.357948 2_2:+70464882 None:intergenic
CTAAAATATCTCCTTGATAA+AGG 0.358065 2_2:+70464867 None:intergenic
TTTATCAGAAGCTTGTGATT+TGG 0.358806 2_2:-70463706 Msa0268960:CDS
CTAATTTGTTAAGAATTAAT+CGG 0.359442 2_2:+70463224 None:intergenic
ATCGAAATATCTGCTAGATC+TGG 0.363586 2_2:+70463277 None:intergenic
GCAACCATTCATGGCCATTA+TGG 0.371253 2_2:-70464896 Msa0268960:CDS
ATCTTCTGAAACCAAGACTT+TGG 0.372706 2_2:+70464544 None:intergenic
AAAGTCTTGGTTTCAGAAGA+TGG 0.375293 2_2:-70464542 Msa0268960:CDS
CAAGAATTCTCGGCATTCCT+TGG 0.385715 2_2:-70464703 Msa0268960:CDS
CTTCGAGAATGTATCACTTT+GGG 0.388824 2_2:-70463337 Msa0268960:CDS
GGAAAACAATTCTTAATTGT+TGG 0.390734 2_2:-70463663 Msa0268960:CDS
CGGATTTCTAACAACTAGAA+TGG 0.400438 2_2:+70462778 None:intergenic
AAGAATTCTCGGCATTCCTT+GGG 0.401980 2_2:-70464702 Msa0268960:CDS
AAATCTTCTAAGATGTTAAT+CGG 0.412258 2_2:+70462422 None:intergenic
ACCTTAGCTGCGGCTTATAT+AGG 0.418344 2_2:-70462242 Msa0268960:CDS
AGTAGTATTTATATCATTTG+TGG 0.424401 2_2:+70462550 None:intergenic
TCAAGTACTTATTACCTCTT+GGG 0.428139 2_2:-70462828 Msa0268960:CDS
TGCAGCCCGTGTTACTGAAT+CGG 0.431042 2_2:+70463623 None:intergenic
GTAGTATTTATATCATTTGT+GGG 0.434707 2_2:+70462551 None:intergenic
TGATCAGCAAGAAGAATATA+CGG 0.437056 2_2:-70463362 Msa0268960:CDS
AAGTCGAAAACTAAGTGATA+AGG 0.438506 2_2:+70462391 None:intergenic
AGAAACAAAGTTCCAATAAA+CGG 0.439134 2_2:+70462653 None:intergenic
ACTCCAGGAGCAACCATTCA+TGG 0.440561 2_2:-70464905 Msa0268960:CDS
ACTCAGATTGGAGAAGAATA+TGG 0.441550 2_2:-70462686 Msa0268960:CDS
AATAATCCCAGAAACATAAC+AGG 0.443207 2_2:+70462296 None:intergenic
CCCAGAAACATAACAGGTAT+AGG 0.450475 2_2:+70462302 None:intergenic
CCGGACGTTGGAATAGTTTG+CGG 0.455395 2_2:+70462758 None:intergenic
TCAAATAACATCCAAAGTCT+TGG 0.456056 2_2:-70464555 Msa0268960:CDS
TTGGCCATGATACTCGGAAA+TGG 0.459897 2_2:-70463806 Msa0268960:CDS
GGCTTATATAGGTGAATCTA+TGG 0.463562 2_2:-70462231 Msa0268960:CDS
GAGTGTATAACAAGAATTCT+CGG 0.465449 2_2:-70464713 Msa0268960:CDS
CAATAATCCAATTAATTCAC+CGG 0.465805 2_2:+70464499 None:intergenic
TATGGAGAAATCCTTTATCA+AGG 0.470177 2_2:-70464878 Msa0268960:CDS
CTCCTGGAGTCGCCAAATAT+GGG 0.476067 2_2:+70464918 None:intergenic
TCACGTCTCGGATGAATTCA+AGG 0.477047 2_2:+70462714 None:intergenic
TCTTCGAGAATGTATCACTT+TGG 0.477646 2_2:-70463338 Msa0268960:CDS
TCAACGATTATTACAATATC+GGG 0.480431 2_2:+70463382 None:intergenic
TTGAGAACGGAGCAAAAGAC+AGG 0.482432 2_2:-70463504 Msa0268960:CDS
TTCTCCATAATGGCCATGAA+TGG 0.483718 2_2:+70464892 None:intergenic
AACCCATATTTGGCGACTCC+AGG 0.484987 2_2:-70464920 Msa0268960:CDS
AGTTTCTTGAAAACTCGCTT+CGG 0.487107 2_2:+70464376 None:intergenic
TTTGGTTAATAAAATCCAAA+AGG 0.488399 2_2:-70464633 Msa0268960:CDS
GATTCCATTTCCGAGTATCA+TGG 0.488914 2_2:+70463802 None:intergenic
TTTGAAGAGATGATGGAAGC+TGG 0.489132 2_2:-70463837 Msa0268960:intron
ATCGGTAAAAGGATTGGAGT+TGG 0.490463 2_2:+70462440 None:intergenic
AACACAAGGTCTTCCAAAAG+TGG 0.491269 2_2:-70464807 Msa0268960:CDS
GTATCGATTAAACAAATCGT+TGG 0.491426 2_2:+70463310 None:intergenic
TATTATGGATGTGTACTCCC+TGG 0.495688 2_2:+70464600 None:intergenic
AGTCGAAAACTAAGTGATAA+GGG 0.500280 2_2:+70462392 None:intergenic
GACGTGAGCAAAACTCAGAT+TGG 0.510359 2_2:-70462698 Msa0268960:CDS
AGAACGAACTGGGCGTGCCT+TGG 0.511332 2_2:-70464471 Msa0268960:CDS
GTAAAAGGATTGGAGTTGGT+TGG 0.515104 2_2:+70462444 None:intergenic
GCTATAGCATCATCATTAGC+TGG 0.518853 2_2:+70463253 None:intergenic
ATTATGGATGTGTACTCCCT+GGG 0.522327 2_2:+70464601 None:intergenic
GGTCGTATTGATTGGTTGAA+AGG 0.523725 2_2:-70464323 Msa0268960:CDS
TTATTGCGAGCAGAACGAAC+TGG 0.524459 2_2:-70464482 Msa0268960:CDS
TCGAAATATCTGCTAGATCT+GGG 0.525094 2_2:+70463278 None:intergenic
AAAATTATAAAGTTACCTCA+TGG 0.526541 2_2:-70462587 Msa0268960:CDS
CCAAAAGGTTTATCGATCCC+AGG 0.528931 2_2:-70464618 Msa0268960:CDS
TGGCCATGAATGGTTGCTCC+TGG 0.529145 2_2:+70464902 None:intergenic
ACCTATATAAGCCGCAGCTA+AGG 0.529655 2_2:+70462241 None:intergenic
TTTATATCGGCAAAGCGTAA+AGG 0.529937 2_2:-70463765 Msa0268960:CDS
ATGTTAATCGGTAAAAGGAT+TGG 0.530907 2_2:+70462434 None:intergenic
CCGCAAACTATTCCAACGTC+CGG 0.541897 2_2:-70462758 Msa0268960:CDS
GATATAAAAGGTGCCATTCG+AGG 0.542260 2_2:+70463780 None:intergenic
GTAACAAATTGCTTCTTCCA+AGG 0.542955 2_2:+70464454 None:intergenic
AAGAAATTCTGACCGGACGT+TGG 0.546490 2_2:+70462746 None:intergenic
TCTCATTTGGAAACATATCT+GGG 0.550552 2_2:-70463429 Msa0268960:CDS
AAGACCTTGTGTTATATCAC+CGG 0.552596 2_2:+70464817 None:intergenic
TCAGTAGCCTATTTCTATGC+GGG 0.553188 2_2:-70462506 Msa0268960:CDS
TTATTCCCAATAATAAAGCT+CGG 0.553354 2_2:+70464432 None:intergenic
GGATTCTGTAATAATAAGAT+CGG 0.553640 2_2:-70464945 Msa0268960:CDS
TATTGCGAGCAGAACGAACT+GGG 0.572451 2_2:-70464481 Msa0268960:CDS
GGGTGGCATAAAATATATGA+CGG 0.577083 2_2:-70463409 Msa0268960:CDS
ACAGGTATAGGAACTACTAA+AGG 0.585481 2_2:+70462314 None:intergenic
TAAGTTCAGGGACTTGAGAA+CGG 0.589134 2_2:-70463517 Msa0268960:intron
GGTGGCATAAAATATATGAC+GGG 0.600658 2_2:-70463408 Msa0268960:CDS
TATATAGGTGAATCTATGGA+AGG 0.605539 2_2:-70462227 Msa0268960:CDS
CAAAAGGTTTATCGATCCCA+GGG 0.609012 2_2:-70464617 Msa0268960:CDS
TGGAGAAGAATATGGTCCGT+GGG 0.620080 2_2:-70462678 Msa0268960:CDS
TTGGAGAAGAATATGGTCCG+TGG 0.620994 2_2:-70462679 Msa0268960:CDS
ATCAATACGACCCCGAAGAG+CGG 0.623604 2_2:+70464334 None:intergenic
AGAATTCTCGGCATTCCTTG+GGG 0.628635 2_2:-70464701 Msa0268960:CDS
TTTCTGGGATTATTTACAAG+CGG 0.630473 2_2:-70462287 Msa0268960:CDS
AATAATCCAATTAATTCACC+GGG 0.632479 2_2:+70464500 None:intergenic
ATATTCAAAGAAATTCTGAC+CGG 0.632509 2_2:+70462739 None:intergenic
TCGGAAATGGAATCCTCGAA+TGG 0.635386 2_2:-70463793 Msa0268960:CDS
GTTCCAATAAACGGAACCCA+CGG 0.647484 2_2:+70462662 None:intergenic
GTCAGTAGCCTATTTCTATG+CGG 0.655321 2_2:-70462507 Msa0268960:CDS
GATAGCAATTACAACCCAAG+AGG 0.659110 2_2:+70462814 None:intergenic
TTAGCAAAAGCCGCTCTTCG+GGG 0.665173 2_2:-70464344 Msa0268960:CDS
GCACCAATCAAGAATCCCCA+AGG 0.666821 2_2:+70464686 None:intergenic
TGAGAACGGAGCAAAAGACA+GGG 0.670658 2_2:-70463503 Msa0268960:CDS
GGTGCAGCTAATTCTCCATG+AGG 0.714976 2_2:+70462572 None:intergenic
CATTTGGAAACATATCTGGG+TGG 0.732935 2_2:-70463426 Msa0268960:CDS
AGATCCGGTGATATAACACA+AGG 0.736976 2_2:-70464821 Msa0268960:CDS
TAATTGTCTCTTGAACATAG+CGG 0.783646 2_2:+70463452 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAATTTTTTTTTTTTCA+AGG + chr2_2:70462965-70462984 None:intergenic 10.0%
!!! GATAAATAAATTTTTAGATT+TGG - chr2_2:70464020-70464039 Msa0268960:intron 10.0%
!! AATATATATATAACTTGAAA+GGG + chr2_2:70464185-70464204 None:intergenic 10.0%
!! AAATATATATATAACTTGAA+AGG + chr2_2:70464186-70464205 None:intergenic 10.0%
!!! TTTTTAAAAAAAAAAACGTG+TGG - chr2_2:70463271-70463290 Msa0268960:CDS 15.0%
!!! TTTTAAAAAAAAAAACGTGT+GGG - chr2_2:70463272-70463291 Msa0268960:CDS 15.0%
!! GTCATTATGTTAATAAAAAA+TGG - chr2_2:70463577-70463596 Msa0268960:intron 15.0%
!!! CTAATTTGTTAAGAATTAAT+CGG + chr2_2:70463943-70463962 None:intergenic 15.0%
!!! AATAAATTTTTAGATTTGGT+TGG - chr2_2:70464024-70464043 Msa0268960:intron 15.0%
!!! ATAAATTTTTAGATTTGGTT+GGG - chr2_2:70464025-70464044 Msa0268960:intron 15.0%
!!! ATAAATATTTTGTGATTAGT+AGG - chr2_2:70464100-70464119 Msa0268960:intron 15.0%
!!! TATTTATTTTTGTTTCGAAT+TGG - chr2_2:70464533-70464552 Msa0268960:CDS 15.0%
!! TTTGGTTAATAAAATCCAAA+AGG - chr2_2:70462531-70462550 Msa0268960:CDS 20.0%
!! TAATTTCGATATGTCTATTA+TGG + chr2_2:70462582-70462601 None:intergenic 20.0%
!!! TTAAAGAGAATGTTGTTTTA+GGG - chr2_2:70462866-70462885 Msa0268960:intron 20.0%
!!! AATCAAATAATTTTCTGTGA+TGG + chr2_2:70463014-70463033 None:intergenic 20.0%
!! ATGACCTGATTATATATTAA+CGG - chr2_2:70463168-70463187 Msa0268960:intron 20.0%
!!! CAATTATTTATTGCTATTTC+AGG - chr2_2:70463225-70463244 Msa0268960:CDS 20.0%
!! TTTAAAAAAAAAAACGTGTG+GGG - chr2_2:70463273-70463292 Msa0268960:CDS 20.0%
!! GATAAATGACAAAAAGATAT+TGG - chr2_2:70463295-70463314 Msa0268960:CDS 20.0%
!! TATGTTAATAAAAAATGGCT+CGG - chr2_2:70463582-70463601 Msa0268960:intron 20.0%
!! ATCAACGATTATTACAATAT+CGG + chr2_2:70463786-70463805 None:intergenic 20.0%
!! AAAATTATAAAGTTACCTCA+TGG - chr2_2:70464577-70464596 Msa0268960:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG + chr2_2:70464616-70464635 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG + chr2_2:70464617-70464636 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG + chr2_2:70464745-70464764 None:intergenic 20.0%
! GGATTCTGTAATAATAAGAT+CGG - chr2_2:70462219-70462238 Msa0268960:CDS 25.0%
! CTAAAATATCTCCTTGATAA+AGG + chr2_2:70462300-70462319 None:intergenic 25.0%
! ATATATGAAAAATCGAGATC+CGG - chr2_2:70462328-70462347 Msa0268960:CDS 25.0%
!!! ATGTCTAATGTATTTTTACC+CGG - chr2_2:70462646-70462665 Msa0268960:CDS 25.0%
! AATAATCCAATTAATTCACC+GGG + chr2_2:70462667-70462686 None:intergenic 25.0%
! CAATAATCCAATTAATTCAC+CGG + chr2_2:70462668-70462687 None:intergenic 25.0%
! TTATTCCCAATAATAAAGCT+CGG + chr2_2:70462735-70462754 None:intergenic 25.0%
!!! CTTAAAGAGAATGTTGTTTT+AGG - chr2_2:70462865-70462884 Msa0268960:intron 25.0%
!!! TAAAGAGAATGTTGTTTTAG+GGG - chr2_2:70462867-70462886 Msa0268960:intron 25.0%
! CTGTGATACATTAGAAATAT+AGG - chr2_2:70463055-70463074 Msa0268960:intron 25.0%
! ATCAAATGACTGCATTTAAA+GGG + chr2_2:70463114-70463133 None:intergenic 25.0%
! AATCAAATGACTGCATTTAA+AGG + chr2_2:70463115-70463134 None:intergenic 25.0%
! TTAAATGCAGTCATTTGATT+TGG - chr2_2:70463115-70463134 Msa0268960:intron 25.0%
! GGAAAACAATTCTTAATTGT+TGG - chr2_2:70463501-70463520 Msa0268960:CDS 25.0%
! TCAACGATTATTACAATATC+GGG + chr2_2:70463785-70463804 None:intergenic 25.0%
!!! ATTAGTTTTTGCAATTTGTG+AGG - chr2_2:70463958-70463977 Msa0268960:intron 25.0%
!!! TTAGTTTTTGCAATTTGTGA+GGG - chr2_2:70463959-70463978 Msa0268960:intron 25.0%
! GTAGGTATTCAAAATAGAAA+AGG - chr2_2:70464118-70464137 Msa0268960:intron 25.0%
! AAGGAAATGAAAGTCAAATA+AGG - chr2_2:70464137-70464156 Msa0268960:intron 25.0%
! ATGAAAGTCAAATAAGGAAA+TGG - chr2_2:70464143-70464162 Msa0268960:intron 25.0%
!!! ATATATTTTTTTTAGAGGGC+AGG - chr2_2:70464198-70464217 Msa0268960:intron 25.0%
!!! TATATTTTTTTTAGAGGGCA+GGG - chr2_2:70464199-70464218 Msa0268960:intron 25.0%
! AACATTTCTATTGGCAAATA+GGG - chr2_2:70464296-70464315 Msa0268960:CDS 25.0%
! ATATTCAAAGAAATTCTGAC+CGG + chr2_2:70464428-70464447 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG + chr2_2:70464514-70464533 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG + chr2_2:70464574-70464593 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG - chr2_2:70464688-70464707 Msa0268960:CDS 25.0%
GATAAAGGATTTCTCCATAA+TGG + chr2_2:70462285-70462304 None:intergenic 30.0%
TATGGAGAAATCCTTTATCA+AGG - chr2_2:70462286-70462305 Msa0268960:CDS 30.0%
! TCTAATATCTGTTCCACTTT+TGG + chr2_2:70462373-70462392 None:intergenic 30.0%
TCGAAAAAAGAATTGATGCT+TGG - chr2_2:70462425-70462444 Msa0268960:CDS 30.0%
GAGTGTATAACAAGAATTCT+CGG - chr2_2:70462451-70462470 Msa0268960:CDS 30.0%
TCAAATAACATCCAAAGTCT+TGG - chr2_2:70462609-70462628 Msa0268960:CDS 30.0%
! TTTTTACCCGGTGAATTAAT+TGG - chr2_2:70462658-70462677 Msa0268960:CDS 30.0%
!! TTGTTACCGAGCTTTATTAT+TGG - chr2_2:70462726-70462745 Msa0268960:CDS 30.0%
!! TGTTACCGAGCTTTATTATT+GGG - chr2_2:70462727-70462746 Msa0268960:CDS 30.0%
!!! AAAGAGAATGTTGTTTTAGG+GGG - chr2_2:70462868-70462887 Msa0268960:intron 30.0%
! GTGCATTATTCTTTTGAATC+CGG + chr2_2:70462911-70462930 None:intergenic 30.0%
TTGGCCGTTAATATATAATC+AGG + chr2_2:70463175-70463194 None:intergenic 30.0%
TATAAAAGAGAAGGTTCCAT+CGG - chr2_2:70463200-70463219 Msa0268960:intron 30.0%
GCAATAAATAATTGTTCCGA+TGG + chr2_2:70463219-70463238 None:intergenic 30.0%
!! CATAACTTTTGAAGAGATGA+TGG - chr2_2:70463320-70463339 Msa0268960:CDS 30.0%
TTTATCAGAAGCTTGTGATT+TGG - chr2_2:70463458-70463477 Msa0268960:CDS 30.0%
TAATTGTCTCTTGAACATAG+CGG + chr2_2:70463715-70463734 None:intergenic 30.0%
CAAGAGACAATTATCTCATT+TGG - chr2_2:70463722-70463741 Msa0268960:CDS 30.0%
ATCTCATTTGGAAACATATC+TGG - chr2_2:70463734-70463753 Msa0268960:CDS 30.0%
TCTCATTTGGAAACATATCT+GGG - chr2_2:70463735-70463754 Msa0268960:CDS 30.0%
TGATCAGCAAGAAGAATATA+CGG - chr2_2:70463802-70463821 Msa0268960:CDS 30.0%
!! GTATCGATTAAACAAATCGT+TGG + chr2_2:70463857-70463876 None:intergenic 30.0%
!! AATTTTTAGATTTGGTTGGG+CGG - chr2_2:70464028-70464047 Msa0268960:intron 30.0%
AAGTAGGTCAACATTTCTAT+TGG - chr2_2:70464287-70464306 Msa0268960:CDS 30.0%
CAACATTTCTATTGGCAAAT+AGG - chr2_2:70464295-70464314 Msa0268960:CDS 30.0%
ACATTTCTATTGGCAAATAG+GGG - chr2_2:70464297-70464316 Msa0268960:CDS 30.0%
TCAAGTACTTATTACCTCTT+GGG - chr2_2:70464336-70464355 Msa0268960:CDS 30.0%
!! ATTTTTGTTTCGAATTGGTC+AGG - chr2_2:70464538-70464557 Msa0268960:CDS 30.0%
!! TTTTTGTTTCGAATTGGTCA+GGG - chr2_2:70464539-70464558 Msa0268960:CDS 30.0%
TATGCGGGTATTTCAAAAAA+AGG - chr2_2:70464673-70464692 Msa0268960:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG - chr2_2:70464678-70464697 Msa0268960:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG + chr2_2:70464733-70464752 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG + chr2_2:70464738-70464757 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG + chr2_2:70464775-70464794 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG + chr2_2:70464776-70464795 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG - chr2_2:70464778-70464797 Msa0268960:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG + chr2_2:70464871-70464890 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG - chr2_2:70464877-70464896 Msa0268960:CDS 30.0%
TATATAGGTGAATCTATGGA+AGG - chr2_2:70464937-70464956 Msa0268960:CDS 30.0%
AAGACCTTGTGTTATATCAC+CGG + chr2_2:70462350-70462369 None:intergenic 35.0%
!! ATCTTCTGAAACCAAGACTT+TGG + chr2_2:70462623-70462642 None:intergenic 35.0%
AAAGTCTTGGTTTCAGAAGA+TGG - chr2_2:70462622-70462641 Msa0268960:CDS 35.0%
GTAACAAATTGCTTCTTCCA+AGG + chr2_2:70462713-70462732 None:intergenic 35.0%
AGTTTCTTGAAAACTCGCTT+CGG + chr2_2:70462791-70462810 None:intergenic 35.0%
AAAGAATAATGCACCGTTCA+CGG - chr2_2:70462917-70462936 Msa0268960:intron 35.0%
! ATAGGATTGAATGCGCTTTT+AGG - chr2_2:70463073-70463092 Msa0268960:intron 35.0%
! CCTTCTCTTTTATAGACGAT+TGG + chr2_2:70463194-70463213 None:intergenic 35.0%
CCAATCGTCTATAAAAGAGA+AGG - chr2_2:70463191-70463210 Msa0268960:intron 35.0%
!! TATTGCTATTTCAGGATACC+TGG - chr2_2:70463233-70463252 Msa0268960:CDS 35.0%
AAAAGTGAAAAAACGAGACC+AGG + chr2_2:70463254-70463273 None:intergenic 35.0%
!! TTCATTTTGGCCATGATACT+CGG - chr2_2:70463352-70463371 Msa0268960:CDS 35.0%
! TCGAATGGCACCTTTTATAT+CGG - chr2_2:70463386-70463405 Msa0268960:CDS 35.0%
TTACGCTTTGCCGATATAAA+AGG + chr2_2:70463399-70463418 None:intergenic 35.0%
TTTATATCGGCAAAGCGTAA+AGG - chr2_2:70463399-70463418 Msa0268960:CDS 35.0%
! GTTAATAAAAAATGGCTCGG+AGG - chr2_2:70463585-70463604 Msa0268960:intron 35.0%
GGGTGGCATAAAATATATGA+CGG - chr2_2:70463755-70463774 Msa0268960:CDS 35.0%
GGTGGCATAAAATATATGAC+GGG - chr2_2:70463756-70463775 Msa0268960:CDS 35.0%
TCTTCGAGAATGTATCACTT+TGG - chr2_2:70463826-70463845 Msa0268960:CDS 35.0%
CTTCGAGAATGTATCACTTT+GGG - chr2_2:70463827-70463846 Msa0268960:CDS 35.0%
TCGAAATATCTGCTAGATCT+GGG + chr2_2:70463889-70463908 None:intergenic 35.0%
ATCGAAATATCTGCTAGATC+TGG + chr2_2:70463890-70463909 None:intergenic 35.0%
CGGTCATAGATTTATGGAAT+CGG - chr2_2:70464048-70464067 Msa0268960:intron 35.0%
CTCAAGTACTTATTACCTCT+TGG - chr2_2:70464335-70464354 Msa0268960:CDS 35.0%
CGGATTTCTAACAACTAGAA+TGG + chr2_2:70464389-70464408 None:intergenic 35.0%
ACTCAGATTGGAGAAGAATA+TGG - chr2_2:70464478-70464497 Msa0268960:CDS 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG - chr2_2:70464540-70464559 Msa0268960:CDS 35.0%
TGAAATACCCGCATAGAAAT+AGG + chr2_2:70464668-70464687 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG + chr2_2:70464853-70464872 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG - chr2_2:70464861-70464880 Msa0268960:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG - chr2_2:70464862-70464881 Msa0268960:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG - chr2_2:70464912-70464931 Msa0268960:CDS 35.0%
GGCTTATATAGGTGAATCTA+TGG - chr2_2:70464933-70464952 Msa0268960:CDS 35.0%
AAGATCGGCTAACCCATATT+TGG - chr2_2:70462234-70462253 Msa0268960:CDS 40.0%
TTCTCCATAATGGCCATGAA+TGG + chr2_2:70462275-70462294 None:intergenic 40.0%
AGATCCGGTGATATAACACA+AGG - chr2_2:70462343-70462362 Msa0268960:CDS 40.0%
AACACAAGGTCTTCCAAAAG+TGG - chr2_2:70462357-70462376 Msa0268960:CDS 40.0%
AAGAATTCTCGGCATTCCTT+GGG - chr2_2:70462462-70462481 Msa0268960:CDS 40.0%
ATTCCTTGGGGATTCTTGAT+TGG - chr2_2:70462475-70462494 Msa0268960:CDS 40.0%
AGCGCAAAGTCGTATTTCTT+TGG - chr2_2:70462513-70462532 Msa0268960:CDS 40.0%
CAAAAGGTTTATCGATCCCA+GGG - chr2_2:70462547-70462566 Msa0268960:CDS 40.0%
ATTATGGATGTGTACTCCCT+GGG + chr2_2:70462566-70462585 None:intergenic 40.0%
TATTATGGATGTGTACTCCC+TGG + chr2_2:70462567-70462586 None:intergenic 40.0%
! TTTTAGCAAAAGCCGCTCTT+CGG - chr2_2:70462818-70462837 Msa0268960:CDS 40.0%
!! GGTCGTATTGATTGGTTGAA+AGG - chr2_2:70462841-70462860 Msa0268960:CDS 40.0%
! TCTTTTGAATCCGGTACCAA+CGG + chr2_2:70462902-70462921 None:intergenic 40.0%
! TATATTGCGTTGACCGTGAA+CGG + chr2_2:70462933-70462952 None:intergenic 40.0%
!! TTTGAAGAGATGATGGAAGC+TGG - chr2_2:70463327-70463346 Msa0268960:CDS 40.0%
! ATGGAAGCTGGAGTTCATTT+TGG - chr2_2:70463339-70463358 Msa0268960:CDS 40.0%
GATTCCATTTCCGAGTATCA+TGG + chr2_2:70463365-70463384 None:intergenic 40.0%
!! GATATAAAAGGTGCCATTCG+AGG + chr2_2:70463387-70463406 None:intergenic 40.0%
! GTTTTTGATGCAGCAAGCAT+GGG - chr2_2:70463480-70463499 Msa0268960:CDS 40.0%
! TCGGAGGTATGTTAACGAAT+TGG - chr2_2:70463601-70463620 Msa0268960:intron 40.0%
AAACGAGACTTCGTAAGTTC+AGG - chr2_2:70463634-70463653 Msa0268960:intron 40.0%
AACGAGACTTCGTAAGTTCA+GGG - chr2_2:70463635-70463654 Msa0268960:intron 40.0%
TAAGTTCAGGGACTTGAGAA+CGG - chr2_2:70463647-70463666 Msa0268960:CDS 40.0%
! AACATAGCGGCATCTCTTTT+TGG + chr2_2:70463702-70463721 None:intergenic 40.0%
CATTTGGAAACATATCTGGG+TGG - chr2_2:70463738-70463757 Msa0268960:CDS 40.0%
GCTATAGCATCATCATTAGC+TGG + chr2_2:70463914-70463933 None:intergenic 40.0%
GATATATCTGCTGTCGAAGT+AGG - chr2_2:70464271-70464290 Msa0268960:intron 40.0%
GATAGCAATTACAACCCAAG+AGG + chr2_2:70464353-70464372 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG - chr2_2:70464657-70464676 Msa0268960:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG - chr2_2:70464658-70464677 Msa0268960:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG + chr2_2:70464723-70464742 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG + chr2_2:70464727-70464746 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG + chr2_2:70464865-70464884 None:intergenic 40.0%
GCAACCATTCATGGCCATTA+TGG - chr2_2:70462268-70462287 Msa0268960:CDS 45.0%
CAAGAATTCTCGGCATTCCT+TGG - chr2_2:70462461-70462480 Msa0268960:CDS 45.0%
AGAATTCTCGGCATTCCTTG+GGG - chr2_2:70462463-70462482 Msa0268960:CDS 45.0%
! CCTGGGATCGATAAACCTTT+TGG + chr2_2:70462549-70462568 None:intergenic 45.0%
CCAAAAGGTTTATCGATCCC+AGG - chr2_2:70462546-70462565 Msa0268960:CDS 45.0%
TTATTGCGAGCAGAACGAAC+TGG - chr2_2:70462682-70462701 Msa0268960:CDS 45.0%
TATTGCGAGCAGAACGAACT+GGG - chr2_2:70462683-70462702 Msa0268960:CDS 45.0%
TTTAGCAAAAGCCGCTCTTC+GGG - chr2_2:70462819-70462838 Msa0268960:CDS 45.0%
! CTTTTGAATCCGGTACCAAC+GGG + chr2_2:70462901-70462920 None:intergenic 45.0%
TTGGCCATGATACTCGGAAA+TGG - chr2_2:70463358-70463377 Msa0268960:CDS 45.0%
TCGGAAATGGAATCCTCGAA+TGG - chr2_2:70463371-70463390 Msa0268960:CDS 45.0%
! GGTTTTTGATGCAGCAAGCA+TGG - chr2_2:70463479-70463498 Msa0268960:CDS 45.0%
! AAGCAGCCGATTCAGTAACA+CGG - chr2_2:70463535-70463554 Msa0268960:intron 45.0%
TTGAGAACGGAGCAAAAGAC+AGG - chr2_2:70463660-70463679 Msa0268960:CDS 45.0%
TGAGAACGGAGCAAAAGACA+GGG - chr2_2:70463661-70463680 Msa0268960:CDS 45.0%
GTTGGGCGGTCATAGATTTA+TGG - chr2_2:70464042-70464061 Msa0268960:intron 45.0%
AAGAAATTCTGACCGGACGT+TGG + chr2_2:70464421-70464440 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG + chr2_2:70464453-70464472 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG + chr2_2:70464465-70464484 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG - chr2_2:70464466-70464485 Msa0268960:CDS 45.0%
TTGGAGAAGAATATGGTCCG+TGG - chr2_2:70464485-70464504 Msa0268960:CDS 45.0%
TGGAGAAGAATATGGTCCGT+GGG - chr2_2:70464486-70464505 Msa0268960:CDS 45.0%
GTTCCAATAAACGGAACCCA+CGG + chr2_2:70464505-70464524 None:intergenic 45.0%
ACCTTAGCTGCGGCTTATAT+AGG - chr2_2:70464922-70464941 Msa0268960:CDS 45.0%
ACCTATATAAGCCGCAGCTA+AGG + chr2_2:70464926-70464945 None:intergenic 45.0%
!!! TATATATATATTTTTTTTAG+AGG - chr2_2:70464193-70464212 Msa0268960:intron 5.0%
!!! ATATATATATTTTTTTTAGA+GGG - chr2_2:70464194-70464213 Msa0268960:intron 5.0%
AACCCATATTTGGCGACTCC+AGG - chr2_2:70462244-70462263 Msa0268960:CDS 50.0%
CTCCTGGAGTCGCCAAATAT+GGG + chr2_2:70462249-70462268 None:intergenic 50.0%
ACTCCAGGAGCAACCATTCA+TGG - chr2_2:70462259-70462278 Msa0268960:CDS 50.0%
GCACCAATCAAGAATCCCCA+AGG + chr2_2:70462481-70462500 None:intergenic 50.0%
TTAGCAAAAGCCGCTCTTCG+GGG - chr2_2:70462820-70462839 Msa0268960:CDS 50.0%
ATCAATACGACCCCGAAGAG+CGG + chr2_2:70462833-70462852 None:intergenic 50.0%
! CTCTTCGGGGTCGTATTGAT+TGG - chr2_2:70462833-70462852 Msa0268960:CDS 50.0%
TTAGGGGGAATGATACCCGT+TGG - chr2_2:70462883-70462902 Msa0268960:intron 50.0%
GGAATGATACCCGTTGGTAC+CGG - chr2_2:70462889-70462908 Msa0268960:intron 50.0%
! AGCAGCCGATTCAGTAACAC+GGG - chr2_2:70463536-70463555 Msa0268960:intron 50.0%
! TGCAGCCCGTGTTACTGAAT+CGG + chr2_2:70463544-70463563 None:intergenic 50.0%
CCGGACGTTGGAATAGTTTG+CGG + chr2_2:70464409-70464428 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG - chr2_2:70464406-70464425 Msa0268960:CDS 50.0%
GGTGCAGCTAATTCTCCATG+AGG + chr2_2:70464595-70464614 None:intergenic 50.0%
GCTCCTGGAGTCGCCAAATA+TGG + chr2_2:70462250-70462269 None:intergenic 55.0%
TGGCCATGAATGGTTGCTCC+TGG + chr2_2:70462265-70462284 None:intergenic 55.0%
GGTCCGTGGGTTCCGTTTAT+TGG - chr2_2:70464499-70464518 Msa0268960:CDS 55.0%
AGAACGAACTGGGCGTGCCT+TGG - chr2_2:70462693-70462712 Msa0268960:CDS 60.0%
! GGTCAGGGGCTCTTTTGCCT+TGG - chr2_2:70464554-70464573 Msa0268960:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70462217 70464969 70462217 ID=Msa0268960;Name=Msa0268960
chr2_2 mRNA 70462217 70464969 70462217 ID=Msa0268960-mRNA-1;Parent=Msa0268960;Name=Msa0268960-mRNA-1;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|4|0|626
chr2_2 exon 70464282 70464969 70464282 ID=Msa0268960-mRNA-1:exon:22639;Parent=Msa0268960-mRNA-1
chr2_2 exon 70463638 70463852 70463638 ID=Msa0268960-mRNA-1:exon:22638;Parent=Msa0268960-mRNA-1
chr2_2 exon 70463206 70463530 70463206 ID=Msa0268960-mRNA-1:exon:22637;Parent=Msa0268960-mRNA-1
chr2_2 exon 70462217 70462869 70462217 ID=Msa0268960-mRNA-1:exon:22636;Parent=Msa0268960-mRNA-1
chr2_2 CDS 70464282 70464969 70464282 ID=Msa0268960-mRNA-1:cds;Parent=Msa0268960-mRNA-1
chr2_2 CDS 70463638 70463852 70463638 ID=Msa0268960-mRNA-1:cds;Parent=Msa0268960-mRNA-1
chr2_2 CDS 70463206 70463530 70463206 ID=Msa0268960-mRNA-1:cds;Parent=Msa0268960-mRNA-1
chr2_2 CDS 70462217 70462869 70462217 ID=Msa0268960-mRNA-1:cds;Parent=Msa0268960-mRNA-1
Gene Sequence

>Msa0268960

ATGGATTCTGTAATAATAAGATCGGCTAACCCATATTTGGCGACTCCAGGAGCAACCATTCATGGCCATTATGGAGAAATCCTTTATCAAGGAGATATTTTAGTTACATTCATATATGAAAAATCGAGATCCGGTGATATAACACAAGGTCTTCCAAAAGTGGAACAGATATTAGAAATACGTTCGATTGATTCAATATCGATGAATCTCGAAAAAAGAATTGATGCTTGGAATGAGTGTATAACAAGAATTCTCGGCATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAATAAAATCCAAAAGGTTTATCGATCCCAGGGAGTACACATCCATAATAGACATATCGAAATTATTGTGCGTCAAATAACATCCAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTATTTTTACCCGGTGAATTAATTGGATTATTGCGAGCAGAACGAACTGGGCGTGCCTTGGAAGAAGCAATTTGTTACCGAGCTTTATTATTGGGAATAACAAAAACATCTCTGAATACTCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTGCTAGAGTTTTAGCAAAAGCCGCTCTTCGGGGTCGTATTGATTGGTTGAAAGGTCTTAAAGAGAATGTTGTTTTAGGGGGAATGATACCCGTTGAGATGATGGAAGCTGGAGTTCATTTTGGCCATGATACTCGGAAATGGAATCCTCGAATGGCACCTTTTATATCGGCAAAGCGTAAAGGTATTCATATTACAAATCTTACTCGAACTGCTCGTTTTTTATCAGAAGCTTGTGATTTGGTTTTTGATGCAGCAAGCATGGGAAAACAATTCTTAATTGTTGGTACAAAAAAAAAAGCAGCCGATTCAGGACTTGAGAACGGAGCAAAAGACAGGGAAACTGAACTCTCTTCCAAAAAGAGATGCCGCTATGTTCAAGAGACAATTATCTCATTTGGAAACATATCTGGGTGGCATAAAATATATGACGGGTTACCCGATATTGTAATAATCGTTGATCAGCAAGAAGAATATACGGCTCTTCGAGAATGTATCACTTTGGGAATTCCAACGATTTGTTTAATCGATACAAATTGTGACCCAGATCTAGCAGATATTTCGATTCCAGCTAATGATGATGCTATAGCTTCAATCCGATTAATTCTTAACAAATTAGTTTTTGCAATTTGTGAGGGGGATTTTCAAGTGCATGCTCAAGTACTTATTACCTCTTGGGTTGTAATTGCTATCTTATTAATTTCAACCATTCTAGTTGTTAGAAATCCGCAAACTATTCCAACGTCCGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATCCGAGACGTGAGCAAAACTCAGATTGGAGAAGAATATGGTCCGTGGGTTCCGTTTATTGGAACTTTGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTGCCTTGGAAAATTATAAAGTTACCTCATGGAGAATTAGCTGCACCCACAAATGATATAAATACTACTGTTGCATTAGCTTTACTTACGTCAGTAGCCTATTTCTATGCGGGTATTTCAAAAAAAGGATTGGCTTATTTTGGTAAATACATCCAACCAACTCCAATCCTTTTACCGATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCGTTAGTACCTTTAGTAGTTCCTATACCTGTTATGTTTCTGGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCTACCTTAGCTGCGGCTTATATAGGTGAATCTATGGAAGGCCATCATTGA

Protein sequence

>Msa0268960

MDSVIIRSANPYLATPGATIHGHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVEMMEAGVHFGHDTRKWNPRMAPFISAKRKGIHITNLTRTARFLSEACDLVFDAASMGKQFLIVGTKKKAADSGLENGAKDRETELSSKKRCRYVQETIISFGNISGWHKIYDGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGDFQVHAQVLITSWVVIAILLISTILVVRNPQTIPTSGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDINTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGESMEGHH*