AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1064410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064410 MtrunA17_Chr4g0016701 96.356 247 7 1 1 247 1 245 4.57e-169 470
Msa1064410 MtrunA17_CPg0492981 96.356 247 7 1 1 247 1 245 4.57e-169 470
Msa1064410 MtrunA17_Chr4g0015611 96.356 247 7 1 1 247 1 245 4.57e-169 470
Msa1064410 MtrunA17_Chr3g0088491 92.019 213 12 1 30 242 2 209 1.92e-122 350
Msa1064410 MtrunA17_Chr7g0275151 72.671 161 11 1 82 242 2 129 2.61e-70 215
Msa1064410 MtrunA17_Chr4g0016711 100.000 81 0 0 261 341 1 81 1.27e-47 155
Msa1064410 MtrunA17_CPg0492971 100.000 81 0 0 261 341 1 81 1.27e-47 155
Msa1064410 MtrunA17_Chr4g0015621 100.000 81 0 0 261 341 1 81 1.27e-47 155
Msa1064410 MtrunA17_Chr4g0060751 66.456 158 7 1 85 242 13 124 3.43e-46 153
Msa1064410 MtrunA17_Chr6g0460191 75.862 87 21 0 154 240 8 94 5.28e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1064410 ATCG00150.1 88.755 249 26 1 1 247 1 249 1.69e-144 408
Msa1064410 ATCG00140.1 96.296 81 3 0 261 341 1 81 2.35e-45 150

Find 74 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGAAGCTTTAACTATTTA+TGG 0.037973 7_2:+56955875 Msa1064410:CDS
TCCTATACCTGTTATGTTTC+TGG 0.052609 7_2:+56954574 Msa1064410:CDS
CAACATTTCTATTGGCAAAT+AGG 0.196864 7_2:+56954008 Msa1064410:CDS
AACATTTCTATTGGCAAATA+GGG 0.237546 7_2:+56954009 Msa1064410:CDS
CTAAGATGTTAATCGGTAAA+AGG 0.238850 7_2:-56954448 None:intergenic
GGTCCGTGGGTTCCGTTTAT+TGG 0.248543 7_2:+56954212 Msa1064410:CDS
TGAAATACCCGCATAGAAAT+AGG 0.255569 7_2:-56954378 None:intergenic
CGGAAGCAGAGGACAAAATA+AGG 0.270738 7_2:+56955825 Msa1064410:CDS
CCTATACCTGTTATGTTTCT+GGG 0.293135 7_2:+56954575 Msa1064410:CDS
ATTGAATCCTATTGAATCTA+AGG 0.304062 7_2:+56955272 Msa1064410:CDS
GCCGTCGGGCTTGCTTCTAT+TGG 0.311843 7_2:+56955743 Msa1064410:CDS
GCTGCTTCTGTTATCGCTGC+TGG 0.315135 7_2:+56955716 Msa1064410:CDS
TGGAAGCTTTAACTATTTAT+GGG 0.316470 7_2:+56955876 Msa1064410:CDS
CTCAAGTACTTATTACCTCT+TGG 0.341108 7_2:+56954048 Msa1064410:CDS
GCTGCAGGGCAAGCTGTAGA+AGG 0.363265 7_2:+56955788 Msa1064410:CDS
TAGATTCAATAGGATTCAAT+AGG 0.364608 7_2:-56955269 None:intergenic
GGGTACTTTATTACTTAGTC+TGG 0.366228 7_2:+56955847 Msa1064410:CDS
TAGGATTCGAGAATCATTCT+TGG 0.369091 7_2:-56955250 None:intergenic
AAATCTTCTAAGATGTTAAT+CGG 0.412258 7_2:-56954455 None:intergenic
GCTTCTATTGGACCTGGAGT+TGG 0.416315 7_2:+56955755 Msa1064410:CDS
ACCTTAGCTGCGGCTTATAT+AGG 0.418344 7_2:+56954635 Msa1064410:CDS
AGTTATACCTTAGATTCAAT+AGG 0.420668 7_2:-56955279 None:intergenic
AGTAGTATTTATATCATTTG+TGG 0.424401 7_2:-56954327 None:intergenic
TCGCTGCTGGGTTGGCCGTC+GGG 0.427770 7_2:+56955729 Msa1064410:CDS
TCAAGTACTTATTACCTCTT+GGG 0.428139 7_2:+56954049 Msa1064410:CDS
ATCGCTGCTGGGTTGGCCGT+CGG 0.428270 7_2:+56955728 Msa1064410:CDS
GTAGTATTTATATCATTTGT+GGG 0.434707 7_2:-56954326 None:intergenic
AAGTCGAAAACTAAGTGATA+AGG 0.438506 7_2:-56954486 None:intergenic
AGAAACAAAGTTCCAATAAA+CGG 0.439134 7_2:-56954224 None:intergenic
ACTCAGATTGGAGAAGAATA+TGG 0.441550 7_2:+56954191 Msa1064410:CDS
AATAATCCCAGAAACATAAC+AGG 0.443207 7_2:-56954581 None:intergenic
CCCAGAAACATAACAGGTAT+AGG 0.450475 7_2:-56954575 None:intergenic
CCGGACGTTGGAATAGTTTG+CGG 0.455395 7_2:-56954119 None:intergenic
AAAAGATTAAACAAAAGGAT+TGG 0.459809 7_2:-56955927 None:intergenic
AGCTTTAACTATTTATGGGC+TGG 0.460263 7_2:+56955880 Msa1064410:CDS
AAGTAGGTCAACATTTCTAT+TGG 0.460455 7_2:+56954000 Msa1064410:CDS
CTGCTTCTGTTATCGCTGCT+GGG 0.461552 7_2:+56955717 Msa1064410:CDS
CGGATTTCGAACAACTAGAA+TGG 0.469852 7_2:-56954099 None:intergenic
GGAATAGGAGAAACTTATCA+TGG 0.471874 7_2:+56955679 Msa1064410:intron
GGAAGCAGAGGACAAAATAA+GGG 0.473459 7_2:+56955826 Msa1064410:CDS
AGAAGGGATTGCGCGACAAC+CGG 0.475077 7_2:+56955805 Msa1064410:CDS
TCACGTCTCGGATGAATTCA+AGG 0.477047 7_2:-56954163 None:intergenic
GGGCTTGCTTCTATTGGACC+TGG 0.481695 7_2:+56955749 Msa1064410:CDS
ATCGGTAAAAGGATTGGAGT+TGG 0.490463 7_2:-56954437 None:intergenic
GATATATCTGCTGTCGAAGT+AGG 0.493921 7_2:+56953984 Msa1064410:CDS
GTTGGTCAAGGTACAGCTGC+AGG 0.497139 7_2:+56955773 Msa1064410:CDS
AGTCGAAAACTAAGTGATAA+GGG 0.500280 7_2:-56954485 None:intergenic
GACGTGAGCAAAACTCAGAT+TGG 0.510359 7_2:+56954179 Msa1064410:CDS
TTCTGTTATCGCTGCTGGGT+TGG 0.514112 7_2:+56955721 Msa1064410:CDS
GTAAAAGGATTGGAGTTGGT+TGG 0.515104 7_2:-56954433 None:intergenic
AAAATTATAAAGTTACCTCA+TGG 0.526541 7_2:+56954290 Msa1064410:CDS
ACCTATATAAGCCGCAGCTA+AGG 0.529655 7_2:-56954636 None:intergenic
ATGTTAATCGGTAAAAGGAT+TGG 0.530907 7_2:-56954443 None:intergenic
CCGCAAACTATTCCAACGTC+CGG 0.541897 7_2:+56954119 Msa1064410:CDS
ATTGGACCTGGAGTTGGTCA+AGG 0.543278 7_2:+56955761 Msa1064410:CDS
AAGAAATTCTGACCGGACGT+TGG 0.546490 7_2:-56954131 None:intergenic
TCAGTAGCCTATTTCTATGC+GGG 0.553188 7_2:+56954371 Msa1064410:CDS
TGCGCGACAACCGGAAGCAG+AGG 0.554171 7_2:+56955814 Msa1064410:CDS
ACATTTCTATTGGCAAATAG+GGG 0.561596 7_2:+56954010 Msa1064410:CDS
CTGCAGGGCAAGCTGTAGAA+GGG 0.582070 7_2:+56955789 Msa1064410:CDS
ACAGGTATAGGAACTACTAA+AGG 0.585481 7_2:-56954563 None:intergenic
GCTGTACCTTGACCAACTCC+AGG 0.593501 7_2:-56955767 None:intergenic
TGGAGAAGAATATGGTCCGT+GGG 0.620080 7_2:+56954199 Msa1064410:CDS
TTGGAGAAGAATATGGTCCG+TGG 0.620994 7_2:+56954198 Msa1064410:CDS
TTTCTGGGATTATTTACAAG+CGG 0.630473 7_2:+56954590 Msa1064410:CDS
ATATTCAAAGAAATTCTGAC+CGG 0.632509 7_2:-56954138 None:intergenic
TCCAATAGAAGCAAGCCCGA+CGG 0.638086 7_2:-56955744 None:intergenic
ACAGAAGCAGCAGAAATCAG+TGG 0.640161 7_2:-56955704 None:intergenic
TTGGTCAAGGTACAGCTGCA+GGG 0.643472 7_2:+56955774 Msa1064410:CDS
GTTCCAATAAACGGAACCCA+CGG 0.647484 7_2:-56954215 None:intergenic
GTCAGTAGCCTATTTCTATG+CGG 0.655321 7_2:+56954370 Msa1064410:CDS
GAAGCAGAGGACAAAATAAG+GGG 0.658398 7_2:+56955827 Msa1064410:CDS
GATAGCAATTACAACCCAAG+AGG 0.659110 7_2:-56954063 None:intergenic
GGTGCAGCTAATTCTCCATG+AGG 0.714976 7_2:-56954305 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTAGAAATATTAGAT+TGG + chr7_2:56954906-56954925 Msa1064410:intron 10.0%
!! AATATTAGAAATATTAGATT+GGG + chr7_2:56954907-56954926 Msa1064410:intron 10.0%
!!! TTTCTTTTCTTTATTTTATT+TGG + chr7_2:56955658-56955677 Msa1064410:intron 10.0%
!! TAATATTAGAAATATTAGAT+TGG + chr7_2:56954906-56954925 Msa1064410:intron 10.0%
!! AATATTAGAAATATTAGATT+GGG + chr7_2:56954907-56954926 Msa1064410:intron 10.0%
!!! TTTCTTTTCTTTATTTTATT+TGG + chr7_2:56955658-56955677 Msa1064410:intron 10.0%
!!! TATTTATTTTTGTTTCGAAT+TGG + chr7_2:56954246-56954265 Msa1064410:CDS 15.0%
!!! ATTCGAATTTAATTTGATTT+AGG - chr7_2:56955065-56955084 None:intergenic 15.0%
!! ATATTTCCATAGTAATAATT+TGG + chr7_2:56955083-56955102 Msa1064410:intron 15.0%
!! GATAATAATGAATAAAAGAA+AGG + chr7_2:56955143-56955162 Msa1064410:intron 15.0%
!! ATAATTAAGTCATAATTTCT+TGG + chr7_2:56955616-56955635 Msa1064410:intron 15.0%
!!! TTCTTTATTTTATTTGGAAT+AGG + chr7_2:56955664-56955683 Msa1064410:intron 15.0%
!!! TATTTATTTTTGTTTCGAAT+TGG + chr7_2:56954246-56954265 Msa1064410:CDS 15.0%
!!! ATTCGAATTTAATTTGATTT+AGG - chr7_2:56955065-56955084 None:intergenic 15.0%
!! ATATTTCCATAGTAATAATT+TGG + chr7_2:56955083-56955102 Msa1064410:intron 15.0%
!! GATAATAATGAATAAAAGAA+AGG + chr7_2:56955143-56955162 Msa1064410:intron 15.0%
!! ATAATTAAGTCATAATTTCT+TGG + chr7_2:56955616-56955635 Msa1064410:intron 15.0%
!!! TTCTTTATTTTATTTGGAAT+AGG + chr7_2:56955664-56955683 Msa1064410:intron 15.0%
!! AAAATTATAAAGTTACCTCA+TGG + chr7_2:56954290-56954309 Msa1064410:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG - chr7_2:56954329-56954348 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG - chr7_2:56954330-56954349 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG - chr7_2:56954458-56954477 None:intergenic 20.0%
!!! TTTTGATAACTAATCAATGA+TGG - chr7_2:56954676-56954695 None:intergenic 20.0%
!! TTAAATGTGAATGAATGAAA+CGG - chr7_2:56955016-56955035 None:intergenic 20.0%
!! TAGGAAAATCAAATAAACTT+TGG - chr7_2:56955046-56955065 None:intergenic 20.0%
!! TAAAAGAAAGGACAAAAAAT+AGG + chr7_2:56955155-56955174 Msa1064410:intron 20.0%
!! AAAAGAAAGGACAAAAAATA+GGG + chr7_2:56955156-56955175 Msa1064410:intron 20.0%
!!! GGTATTGAATAATTCAAAAA+TGG + chr7_2:56955403-56955422 Msa1064410:intron 20.0%
!! AAATGAATATCGAAGTTATT+TGG + chr7_2:56955536-56955555 Msa1064410:intron 20.0%
!! AAAATTATAAAGTTACCTCA+TGG + chr7_2:56954290-56954309 Msa1064410:CDS 20.0%
!! GTAGTATTTATATCATTTGT+GGG - chr7_2:56954329-56954348 None:intergenic 20.0%
!! AGTAGTATTTATATCATTTG+TGG - chr7_2:56954330-56954349 None:intergenic 20.0%
!!! AAATCTTCTAAGATGTTAAT+CGG - chr7_2:56954458-56954477 None:intergenic 20.0%
!!! TTTTGATAACTAATCAATGA+TGG - chr7_2:56954676-56954695 None:intergenic 20.0%
!! TTAAATGTGAATGAATGAAA+CGG - chr7_2:56955016-56955035 None:intergenic 20.0%
!! TAGGAAAATCAAATAAACTT+TGG - chr7_2:56955046-56955065 None:intergenic 20.0%
!! TAAAAGAAAGGACAAAAAAT+AGG + chr7_2:56955155-56955174 Msa1064410:intron 20.0%
!! AAAAGAAAGGACAAAAAATA+GGG + chr7_2:56955156-56955175 Msa1064410:intron 20.0%
!!! GGTATTGAATAATTCAAAAA+TGG + chr7_2:56955403-56955422 Msa1064410:intron 20.0%
!! AAATGAATATCGAAGTTATT+TGG + chr7_2:56955536-56955555 Msa1064410:intron 20.0%
! AACATTTCTATTGGCAAATA+GGG + chr7_2:56954009-56954028 Msa1064410:CDS 25.0%
! ATATTCAAAGAAATTCTGAC+CGG - chr7_2:56954141-56954160 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG - chr7_2:56954227-56954246 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG - chr7_2:56954287-56954306 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG + chr7_2:56954401-56954420 Msa1064410:CDS 25.0%
! CATTGGAGTAAAATACAAAT+TGG - chr7_2:56954713-56954732 None:intergenic 25.0%
! TAGATTGGGAACTATAATTT+CGG + chr7_2:56954921-56954940 Msa1064410:intron 25.0%
! GAAAGACCAAATTATTACTA+TGG - chr7_2:56955092-56955111 None:intergenic 25.0%
! TTATTCATTATTATCCCACA+TGG - chr7_2:56955138-56955157 None:intergenic 25.0%
!!! AAGACAACTCTTAGTTTTTT+AGG + chr7_2:56955222-56955241 Msa1064410:intron 25.0%
!!! AGACAACTCTTAGTTTTTTA+GGG + chr7_2:56955223-56955242 Msa1064410:intron 25.0%
! TAGATTCAATAGGATTCAAT+AGG - chr7_2:56955272-56955291 None:intergenic 25.0%
! ATTGAATCCTATTGAATCTA+AGG + chr7_2:56955272-56955291 Msa1064410:CDS 25.0%
! AGTTATACCTTAGATTCAAT+AGG - chr7_2:56955282-56955301 None:intergenic 25.0%
!! GAATCTAAGGTATAACTAAT+TGG + chr7_2:56955285-56955304 Msa1064410:intron 25.0%
! AGAACGAAGAATTAAAAGAA+TGG + chr7_2:56955442-56955461 Msa1064410:intron 25.0%
! TGTATTCACAAAAAACTACA+TGG + chr7_2:56955497-56955516 Msa1064410:intron 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG + chr7_2:56955875-56955894 Msa1064410:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG + chr7_2:56955876-56955895 Msa1064410:CDS 25.0%
! AACATTTCTATTGGCAAATA+GGG + chr7_2:56954009-56954028 Msa1064410:CDS 25.0%
! ATATTCAAAGAAATTCTGAC+CGG - chr7_2:56954141-56954160 None:intergenic 25.0%
! AGAAACAAAGTTCCAATAAA+CGG - chr7_2:56954227-56954246 None:intergenic 25.0%
!! GGTAACTTTATAATTTTCCA+AGG - chr7_2:56954287-56954306 None:intergenic 25.0%
!!! AAAAAAGGATTGGCTTATTT+TGG + chr7_2:56954401-56954420 Msa1064410:CDS 25.0%
! CATTGGAGTAAAATACAAAT+TGG - chr7_2:56954713-56954732 None:intergenic 25.0%
! TAGATTGGGAACTATAATTT+CGG + chr7_2:56954921-56954940 Msa1064410:intron 25.0%
! GAAAGACCAAATTATTACTA+TGG - chr7_2:56955092-56955111 None:intergenic 25.0%
! TTATTCATTATTATCCCACA+TGG - chr7_2:56955138-56955157 None:intergenic 25.0%
!!! AAGACAACTCTTAGTTTTTT+AGG + chr7_2:56955222-56955241 Msa1064410:intron 25.0%
!!! AGACAACTCTTAGTTTTTTA+GGG + chr7_2:56955223-56955242 Msa1064410:intron 25.0%
! TAGATTCAATAGGATTCAAT+AGG - chr7_2:56955272-56955291 None:intergenic 25.0%
! ATTGAATCCTATTGAATCTA+AGG + chr7_2:56955272-56955291 Msa1064410:CDS 25.0%
! AGTTATACCTTAGATTCAAT+AGG - chr7_2:56955282-56955301 None:intergenic 25.0%
!! GAATCTAAGGTATAACTAAT+TGG + chr7_2:56955285-56955304 Msa1064410:intron 25.0%
! AGAACGAAGAATTAAAAGAA+TGG + chr7_2:56955442-56955461 Msa1064410:intron 25.0%
! TGTATTCACAAAAAACTACA+TGG + chr7_2:56955497-56955516 Msa1064410:intron 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG + chr7_2:56955875-56955894 Msa1064410:CDS 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG + chr7_2:56955876-56955895 Msa1064410:CDS 25.0%
AAGTAGGTCAACATTTCTAT+TGG + chr7_2:56954000-56954019 Msa1064410:CDS 30.0%
CAACATTTCTATTGGCAAAT+AGG + chr7_2:56954008-56954027 Msa1064410:CDS 30.0%
ACATTTCTATTGGCAAATAG+GGG + chr7_2:56954010-56954029 Msa1064410:CDS 30.0%
TCAAGTACTTATTACCTCTT+GGG + chr7_2:56954049-56954068 Msa1064410:CDS 30.0%
!! ATTTTTGTTTCGAATTGGTC+AGG + chr7_2:56954251-56954270 Msa1064410:CDS 30.0%
!! TTTTTGTTTCGAATTGGTCA+GGG + chr7_2:56954252-56954271 Msa1064410:CDS 30.0%
TATGCGGGTATTTCAAAAAA+AGG + chr7_2:56954386-56954405 Msa1064410:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG + chr7_2:56954391-56954410 Msa1064410:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG - chr7_2:56954446-56954465 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG - chr7_2:56954451-56954470 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG - chr7_2:56954488-56954507 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG - chr7_2:56954489-56954508 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG + chr7_2:56954491-56954510 Msa1064410:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG - chr7_2:56954584-56954603 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG + chr7_2:56954590-56954609 Msa1064410:CDS 30.0%
TTAGATTAATTCGATCCATG+TGG + chr7_2:56955120-56955139 Msa1064410:intron 30.0%
TAGATTAATTCGATCCATGT+GGG + chr7_2:56955121-56955140 Msa1064410:intron 30.0%
!!! GACAACTCTTAGTTTTTTAG+GGG + chr7_2:56955224-56955243 Msa1064410:intron 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG + chr7_2:56955856-56955875 Msa1064410:CDS 30.0%
AAGTAGGTCAACATTTCTAT+TGG + chr7_2:56954000-56954019 Msa1064410:CDS 30.0%
CAACATTTCTATTGGCAAAT+AGG + chr7_2:56954008-56954027 Msa1064410:CDS 30.0%
ACATTTCTATTGGCAAATAG+GGG + chr7_2:56954010-56954029 Msa1064410:CDS 30.0%
TCAAGTACTTATTACCTCTT+GGG + chr7_2:56954049-56954068 Msa1064410:CDS 30.0%
!! ATTTTTGTTTCGAATTGGTC+AGG + chr7_2:56954251-56954270 Msa1064410:CDS 30.0%
!! TTTTTGTTTCGAATTGGTCA+GGG + chr7_2:56954252-56954271 Msa1064410:CDS 30.0%
TATGCGGGTATTTCAAAAAA+AGG + chr7_2:56954386-56954405 Msa1064410:CDS 30.0%
GGGTATTTCAAAAAAAGGAT+TGG + chr7_2:56954391-56954410 Msa1064410:CDS 30.0%
ATGTTAATCGGTAAAAGGAT+TGG - chr7_2:56954446-56954465 None:intergenic 30.0%
CTAAGATGTTAATCGGTAAA+AGG - chr7_2:56954451-56954470 None:intergenic 30.0%
AGTCGAAAACTAAGTGATAA+GGG - chr7_2:56954488-56954507 None:intergenic 30.0%
AAGTCGAAAACTAAGTGATA+AGG - chr7_2:56954489-56954508 None:intergenic 30.0%
!! TCACTTAGTTTTCGACTTTT+CGG + chr7_2:56954491-56954510 Msa1064410:CDS 30.0%
AATAATCCCAGAAACATAAC+AGG - chr7_2:56954584-56954603 None:intergenic 30.0%
!! TTTCTGGGATTATTTACAAG+CGG + chr7_2:56954590-56954609 Msa1064410:CDS 30.0%
TTAGATTAATTCGATCCATG+TGG + chr7_2:56955120-56955139 Msa1064410:intron 30.0%
TAGATTAATTCGATCCATGT+GGG + chr7_2:56955121-56955140 Msa1064410:intron 30.0%
!!! GACAACTCTTAGTTTTTTAG+GGG + chr7_2:56955224-56955243 Msa1064410:intron 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG + chr7_2:56955856-56955875 Msa1064410:CDS 30.0%
CTCAAGTACTTATTACCTCT+TGG + chr7_2:56954048-56954067 Msa1064410:CDS 35.0%
ACTCAGATTGGAGAAGAATA+TGG + chr7_2:56954191-56954210 Msa1064410:CDS 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG + chr7_2:56954253-56954272 Msa1064410:CDS 35.0%
TGAAATACCCGCATAGAAAT+AGG - chr7_2:56954381-56954400 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG - chr7_2:56954566-56954585 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG + chr7_2:56954574-56954593 Msa1064410:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG + chr7_2:56954575-56954594 Msa1064410:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG + chr7_2:56954625-56954644 Msa1064410:CDS 35.0%
TATATAGGTGAATCCATGGA+AGG + chr7_2:56954650-56954669 Msa1064410:intron 35.0%
AAAGGACAAAAAATAGGGTG+AGG + chr7_2:56955161-56955180 Msa1064410:intron 35.0%
AAGGACAAAAAATAGGGTGA+GGG + chr7_2:56955162-56955181 Msa1064410:intron 35.0%
TAGGATTCGAGAATCATTCT+TGG - chr7_2:56955253-56955272 None:intergenic 35.0%
! CCTAAATTTAGAGTAGTAGC+AGG - chr7_2:56955385-56955404 None:intergenic 35.0%
CCTGCTACTACTCTAAATTT+AGG + chr7_2:56955382-56955401 Msa1064410:intron 35.0%
GGAATAGGAGAAACTTATCA+TGG + chr7_2:56955679-56955698 Msa1064410:intron 35.0%
GGGTACTTTATTACTTAGTC+TGG + chr7_2:56955847-56955866 Msa1064410:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG + chr7_2:56955880-56955899 Msa1064410:CDS 35.0%
CTCAAGTACTTATTACCTCT+TGG + chr7_2:56954048-56954067 Msa1064410:CDS 35.0%
ACTCAGATTGGAGAAGAATA+TGG + chr7_2:56954191-56954210 Msa1064410:CDS 35.0%
!! TTTTGTTTCGAATTGGTCAG+GGG + chr7_2:56954253-56954272 Msa1064410:CDS 35.0%
TGAAATACCCGCATAGAAAT+AGG - chr7_2:56954381-56954400 None:intergenic 35.0%
ACAGGTATAGGAACTACTAA+AGG - chr7_2:56954566-56954585 None:intergenic 35.0%
TCCTATACCTGTTATGTTTC+TGG + chr7_2:56954574-56954593 Msa1064410:CDS 35.0%
CCTATACCTGTTATGTTTCT+GGG + chr7_2:56954575-56954594 Msa1064410:CDS 35.0%
!! TATTTTTGCTACCTTAGCTG+CGG + chr7_2:56954625-56954644 Msa1064410:CDS 35.0%
TATATAGGTGAATCCATGGA+AGG + chr7_2:56954650-56954669 Msa1064410:intron 35.0%
AAAGGACAAAAAATAGGGTG+AGG + chr7_2:56955161-56955180 Msa1064410:intron 35.0%
AAGGACAAAAAATAGGGTGA+GGG + chr7_2:56955162-56955181 Msa1064410:intron 35.0%
TAGGATTCGAGAATCATTCT+TGG - chr7_2:56955253-56955272 None:intergenic 35.0%
! CCTAAATTTAGAGTAGTAGC+AGG - chr7_2:56955385-56955404 None:intergenic 35.0%
CCTGCTACTACTCTAAATTT+AGG + chr7_2:56955382-56955401 Msa1064410:intron 35.0%
GGAATAGGAGAAACTTATCA+TGG + chr7_2:56955679-56955698 Msa1064410:intron 35.0%
GGGTACTTTATTACTTAGTC+TGG + chr7_2:56955847-56955866 Msa1064410:CDS 35.0%
! AGCTTTAACTATTTATGGGC+TGG + chr7_2:56955880-56955899 Msa1064410:CDS 35.0%
GATATATCTGCTGTCGAAGT+AGG + chr7_2:56953984-56954003 Msa1064410:CDS 40.0%
GATAGCAATTACAACCCAAG+AGG - chr7_2:56954066-56954085 None:intergenic 40.0%
CGGATTTCGAACAACTAGAA+TGG - chr7_2:56954102-56954121 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG + chr7_2:56954370-56954389 Msa1064410:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG + chr7_2:56954371-56954390 Msa1064410:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG - chr7_2:56954436-56954455 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG - chr7_2:56954440-56954459 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG - chr7_2:56954578-56954597 None:intergenic 40.0%
GGCTTATATAGGTGAATCCA+TGG + chr7_2:56954646-56954665 Msa1064410:intron 40.0%
TAATCAATGATGGCCTTCCA+TGG - chr7_2:56954666-56954685 None:intergenic 40.0%
AGGACAAAAAATAGGGTGAG+GGG + chr7_2:56955163-56955182 Msa1064410:intron 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG - chr7_2:56955827-56955846 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG + chr7_2:56955826-56955845 Msa1064410:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG + chr7_2:56955827-56955846 Msa1064410:CDS 40.0%
GATATATCTGCTGTCGAAGT+AGG + chr7_2:56953984-56954003 Msa1064410:CDS 40.0%
GATAGCAATTACAACCCAAG+AGG - chr7_2:56954066-56954085 None:intergenic 40.0%
CGGATTTCGAACAACTAGAA+TGG - chr7_2:56954102-56954121 None:intergenic 40.0%
!! GTCAGTAGCCTATTTCTATG+CGG + chr7_2:56954370-56954389 Msa1064410:CDS 40.0%
!! TCAGTAGCCTATTTCTATGC+GGG + chr7_2:56954371-56954390 Msa1064410:CDS 40.0%
! GTAAAAGGATTGGAGTTGGT+TGG - chr7_2:56954436-56954455 None:intergenic 40.0%
ATCGGTAAAAGGATTGGAGT+TGG - chr7_2:56954440-56954459 None:intergenic 40.0%
CCCAGAAACATAACAGGTAT+AGG - chr7_2:56954578-56954597 None:intergenic 40.0%
GGCTTATATAGGTGAATCCA+TGG + chr7_2:56954646-56954665 Msa1064410:intron 40.0%
TAATCAATGATGGCCTTCCA+TGG - chr7_2:56954666-56954685 None:intergenic 40.0%
AGGACAAAAAATAGGGTGAG+GGG + chr7_2:56955163-56955182 Msa1064410:intron 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG - chr7_2:56955827-56955846 None:intergenic 40.0%
GGAAGCAGAGGACAAAATAA+GGG + chr7_2:56955826-56955845 Msa1064410:CDS 40.0%
GAAGCAGAGGACAAAATAAG+GGG + chr7_2:56955827-56955846 Msa1064410:CDS 40.0%
AAGAAATTCTGACCGGACGT+TGG - chr7_2:56954134-56954153 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG - chr7_2:56954166-56954185 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG - chr7_2:56954178-56954197 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG + chr7_2:56954179-56954198 Msa1064410:CDS 45.0%
TTGGAGAAGAATATGGTCCG+TGG + chr7_2:56954198-56954217 Msa1064410:CDS 45.0%
TGGAGAAGAATATGGTCCGT+GGG + chr7_2:56954199-56954218 Msa1064410:CDS 45.0%
GTTCCAATAAACGGAACCCA+CGG - chr7_2:56954218-56954237 None:intergenic 45.0%
ACCTTAGCTGCGGCTTATAT+AGG + chr7_2:56954635-56954654 Msa1064410:CDS 45.0%
ACCTATATAAGCCGCAGCTA+AGG - chr7_2:56954639-56954658 None:intergenic 45.0%
GGACAAAAAATAGGGTGAGG+GGG + chr7_2:56955164-56955183 Msa1064410:intron 45.0%
ACAGAAGCAGCAGAAATCAG+TGG - chr7_2:56955707-56955726 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG + chr7_2:56955825-56955844 Msa1064410:CDS 45.0%
AAGAAATTCTGACCGGACGT+TGG - chr7_2:56954134-56954153 None:intergenic 45.0%
TCACGTCTCGGATGAATTCA+AGG - chr7_2:56954166-56954185 None:intergenic 45.0%
! TCTGAGTTTTGCTCACGTCT+CGG - chr7_2:56954178-56954197 None:intergenic 45.0%
GACGTGAGCAAAACTCAGAT+TGG + chr7_2:56954179-56954198 Msa1064410:CDS 45.0%
TTGGAGAAGAATATGGTCCG+TGG + chr7_2:56954198-56954217 Msa1064410:CDS 45.0%
TGGAGAAGAATATGGTCCGT+GGG + chr7_2:56954199-56954218 Msa1064410:CDS 45.0%
GTTCCAATAAACGGAACCCA+CGG - chr7_2:56954218-56954237 None:intergenic 45.0%
ACCTTAGCTGCGGCTTATAT+AGG + chr7_2:56954635-56954654 Msa1064410:CDS 45.0%
ACCTATATAAGCCGCAGCTA+AGG - chr7_2:56954639-56954658 None:intergenic 45.0%
GGACAAAAAATAGGGTGAGG+GGG + chr7_2:56955164-56955183 Msa1064410:intron 45.0%
ACAGAAGCAGCAGAAATCAG+TGG - chr7_2:56955707-56955726 None:intergenic 45.0%
CGGAAGCAGAGGACAAAATA+AGG + chr7_2:56955825-56955844 Msa1064410:CDS 45.0%
!! TAAATAAAAATAATATTCAT+TGG - chr7_2:56954730-56954749 None:intergenic 5.0%
!! TAAATAAAAATAATATTCAT+TGG - chr7_2:56954730-56954749 None:intergenic 5.0%
CCGGACGTTGGAATAGTTTG+CGG - chr7_2:56954122-56954141 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG + chr7_2:56954119-56954138 Msa1064410:CDS 50.0%
GGTGCAGCTAATTCTCCATG+AGG - chr7_2:56954308-56954327 None:intergenic 50.0%
CTGCTTCTGTTATCGCTGCT+GGG + chr7_2:56955717-56955736 Msa1064410:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG + chr7_2:56955721-56955740 Msa1064410:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG - chr7_2:56955747-56955766 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG + chr7_2:56955755-56955774 Msa1064410:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG + chr7_2:56955761-56955780 Msa1064410:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG + chr7_2:56955774-56955793 Msa1064410:CDS 50.0%
CCGGACGTTGGAATAGTTTG+CGG - chr7_2:56954122-56954141 None:intergenic 50.0%
CCGCAAACTATTCCAACGTC+CGG + chr7_2:56954119-56954138 Msa1064410:CDS 50.0%
GGTGCAGCTAATTCTCCATG+AGG - chr7_2:56954308-56954327 None:intergenic 50.0%
CTGCTTCTGTTATCGCTGCT+GGG + chr7_2:56955717-56955736 Msa1064410:CDS 50.0%
TTCTGTTATCGCTGCTGGGT+TGG + chr7_2:56955721-56955740 Msa1064410:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG - chr7_2:56955747-56955766 None:intergenic 50.0%
GCTTCTATTGGACCTGGAGT+TGG + chr7_2:56955755-56955774 Msa1064410:CDS 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG + chr7_2:56955761-56955780 Msa1064410:CDS 50.0%
TTGGTCAAGGTACAGCTGCA+GGG + chr7_2:56955774-56955793 Msa1064410:CDS 50.0%
GGTCCGTGGGTTCCGTTTAT+TGG + chr7_2:56954212-56954231 Msa1064410:CDS 55.0%
GCTGCTTCTGTTATCGCTGC+TGG + chr7_2:56955716-56955735 Msa1064410:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG + chr7_2:56955749-56955768 Msa1064410:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG - chr7_2:56955770-56955789 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG + chr7_2:56955773-56955792 Msa1064410:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG + chr7_2:56955789-56955808 Msa1064410:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG + chr7_2:56955805-56955824 Msa1064410:CDS 55.0%
GGTCCGTGGGTTCCGTTTAT+TGG + chr7_2:56954212-56954231 Msa1064410:CDS 55.0%
GCTGCTTCTGTTATCGCTGC+TGG + chr7_2:56955716-56955735 Msa1064410:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG + chr7_2:56955749-56955768 Msa1064410:CDS 55.0%
GCTGTACCTTGACCAACTCC+AGG - chr7_2:56955770-56955789 None:intergenic 55.0%
GTTGGTCAAGGTACAGCTGC+AGG + chr7_2:56955773-56955792 Msa1064410:CDS 55.0%
CTGCAGGGCAAGCTGTAGAA+GGG + chr7_2:56955789-56955808 Msa1064410:CDS 55.0%
AGAAGGGATTGCGCGACAAC+CGG + chr7_2:56955805-56955824 Msa1064410:CDS 55.0%
! GGTCAGGGGCTCTTTTGCCT+TGG + chr7_2:56954267-56954286 Msa1064410:CDS 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG + chr7_2:56955743-56955762 Msa1064410:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG + chr7_2:56955788-56955807 Msa1064410:CDS 60.0%
! GGTCAGGGGCTCTTTTGCCT+TGG + chr7_2:56954267-56954286 Msa1064410:CDS 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG + chr7_2:56955743-56955762 Msa1064410:CDS 60.0%
GCTGCAGGGCAAGCTGTAGA+AGG + chr7_2:56955788-56955807 Msa1064410:CDS 60.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG + chr7_2:56955728-56955747 Msa1064410:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG + chr7_2:56955814-56955833 Msa1064410:CDS 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG + chr7_2:56955728-56955747 Msa1064410:CDS 65.0%
TGCGCGACAACCGGAAGCAG+AGG + chr7_2:56955814-56955833 Msa1064410:CDS 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG + chr7_2:56955729-56955748 Msa1064410:CDS 70.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG + chr7_2:56955729-56955748 Msa1064410:CDS 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 56953939 56955943 56953939 ID=Msa1064410;Name=Msa1064410
chr7_2 mRNA 56953939 56955943 56953939 ID=Msa1064410-mRNA-1;Parent=Msa1064410;Name=Msa1064410-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|0.66|1|1|3|0|341
chr7_2 exon 56953939 56954656 56953939 ID=Msa1064410-mRNA-1:exon:10818;Parent=Msa1064410-mRNA-1
chr7_2 exon 56955244 56955293 56955244 ID=Msa1064410-mRNA-1:exon:10819;Parent=Msa1064410-mRNA-1
chr7_2 exon 56955686 56955943 56955686 ID=Msa1064410-mRNA-1:exon:10820;Parent=Msa1064410-mRNA-1
chr7_2 CDS 56953939 56954656 56953939 ID=Msa1064410-mRNA-1:cds;Parent=Msa1064410-mRNA-1
chr7_2 CDS 56955244 56955293 56955244 ID=Msa1064410-mRNA-1:cds;Parent=Msa1064410-mRNA-1
chr7_2 CDS 56955686 56955943 56955686 ID=Msa1064410-mRNA-1:cds;Parent=Msa1064410-mRNA-1
Gene Sequence

>Msa1064410

ATGAATGTTCTATTATGTTACATCAACACATTAAACAGATTCTATGATATATCTGCTGTCGAAGTAGGTCAACATTTCTATTGGCAAATAGGGGATTTTCAAGTGCATGCTCAAGTACTTATTACCTCTTGGGTTGTAATTGCTATCTTATTAATTTCAACCATTCTAGTTGTTCGAAATCCGCAAACTATTCCAACGTCCGGTCAGAATTTCTTTGAATATGTCCTTGAATTCATCCGAGACGTGAGCAAAACTCAGATTGGAGAAGAATATGGTCCGTGGGTTCCGTTTATTGGAACTTTGTTTCTATTTATTTTTGTTTCGAATTGGTCAGGGGCTCTTTTGCCTTGGAAAATTATAAAGTTACCTCATGGAGAATTAGCTGCACCCACAAATGATATAAATACTACTGTTGCATTAGCTTTACTTACGTCAGTAGCCTATTTCTATGCGGGTATTTCAAAAAAAGGATTGGCTTATTTTGGTAAATACATCCAACCAACTCCAATCCTTTTACCGATTAACATCTTAGAAGATTTCACAAAACCCTTATCACTTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTTTCGTTAGTACCTTTAGTAGTTCCTATACCTGTTATGTTTCTGGGATTATTTACAAGCGGTATTCAAGCTCTTATTTTTGCTACCTTAGCTGCGGCTTATATAGGGGTTTCCAAGAATGATTCTCGAATCCTATTGAATCCTATTGAATCTAAGGAGAAACTTATCATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGGTACTTTATTACTTAGTCTGGCTTTTATGGAAGCTTTAACTATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTGCCAATCCTTTTGTTTAA

Protein sequence

>Msa1064410

MNVLLCYINTLNRFYDISAVEVGQHFYWQIGDFQVHAQVLITSWVVIAILLISTILVVRNPQTIPTSGQNFFEYVLEFIRDVSKTQIGEEYGPWVPFIGTLFLFIFVSNWSGALLPWKIIKLPHGELAAPTNDINTTVALALLTSVAYFYAGISKKGLAYFGKYIQPTPILLPINILEDFTKPLSLSFRLFGNILADELVVVVLVSLVPLVVPIPVMFLGLFTSGIQALIFATLAAAYIGVSKNDSRILLNPIESKEKLIMDPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEDKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV*