AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0268840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268840 MtrunA17_Chr4g0015651 97.636 423 10 0 1 423 1 423 0.0 825
Msa0268840 MtrunA17_Chr4g0016741 97.636 423 10 0 1 423 1 423 0.0 825
Msa0268840 MtrunA17_CPg0492941 97.636 423 10 0 1 423 1 423 0.0 825
Msa0268840 MtrunA17_MTg0490471 64.733 431 143 1 3 424 4 434 0.0 558
Msa0268840 MtrunA17_Chr2g0278821 90.148 203 20 0 221 423 2 204 1.77e-130 378
Msa0268840 MtrunA17_Chr2g0286451 88.525 183 21 0 79 261 7 189 7.36e-110 322
Msa0268840 MtrunA17_Chr4g0040631 87.324 142 12 1 1 142 1 136 1.70e-76 234
Msa0268840 MtrunA17_Chr4g0061471 81.333 75 14 0 100 174 1 75 4.00e-34 122
Msa0268840 MtrunA17_Chr1g0211291 29.050 358 205 9 87 399 84 437 4.74e-30 121
Msa0268840 MtrunA17_Chr7g0250051 28.610 374 219 9 70 399 66 435 1.56e-29 120
Msa0268840 MtrunA17_Chr5g0413061 52.941 85 26 2 195 278 13 84 2.42e-19 82.4
Msa0268840 MtrunA17_Chr4g0000341 28.740 254 156 7 137 372 220 466 6.98e-16 80.1
Msa0268840 MtrunA17_Chr4g0016371 25.140 358 250 8 79 424 44 395 1.93e-15 78.2
Msa0268840 MtrunA17_CPg0493401 25.140 358 250 8 79 424 83 434 2.45e-15 77.8
Msa0268840 MtrunA17_Chr7g0229391 24.860 358 251 7 79 424 83 434 4.55e-15 77.0
Msa0268840 MtrunA17_Chr1g0208751 23.472 409 277 11 54 431 98 501 8.14e-15 76.6
Msa0268840 MtrunA17_Chr3g0090971 25.140 358 250 8 79 424 83 434 1.05e-14 75.9
Msa0268840 MtrunA17_Chr1g0208761 23.002 413 274 11 54 431 101 504 2.59e-14 75.1
Msa0268840 MtrunA17_Chr2g0310971 27.758 281 163 9 98 359 29 288 5.09e-12 67.4
Msa0268840 MtrunA17_Chr2g0310861 27.758 281 163 9 98 359 29 288 5.09e-12 67.4
Msa0268840 MtrunA17_Chr2g0310911 27.758 281 163 9 98 359 29 288 5.09e-12 67.4
Msa0268840 MtrunA17_Chr2g0311041 27.758 281 163 9 98 359 29 288 5.09e-12 67.4
Msa0268840 MtrunA17_Chr7g0276011 27.313 227 154 5 79 296 83 307 3.15e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0268840 ATCG00120.1 94.090 423 25 0 1 423 1 423 0.0 801
Msa0268840 AT2G07698.1 61.772 429 155 1 5 424 276 704 0.0 536
Msa0268840 ATMG01190.1 61.538 429 156 1 5 424 6 434 0.0 533
Msa0268840 AT4G38510.5 31.250 304 186 8 87 371 90 389 9.76e-31 124
Msa0268840 AT4G38510.1 31.250 304 186 8 87 371 83 382 1.00e-30 124
Msa0268840 AT4G38510.3 31.250 304 186 8 87 371 83 382 1.00e-30 124
Msa0268840 AT4G38510.4 31.250 304 186 8 87 371 83 382 1.00e-30 124
Msa0268840 AT4G38510.2 31.250 304 186 8 87 371 83 382 1.00e-30 124
Msa0268840 AT1G76030.1 29.132 357 205 9 87 399 82 434 7.13e-30 121
Msa0268840 AT1G20260.1 28.267 375 220 9 70 399 65 435 5.13e-29 119
Msa0268840 AT5G08670.1 26.027 292 202 4 86 367 147 434 1.36e-16 82.4
Msa0268840 AT5G08690.1 26.027 292 202 4 86 367 147 434 1.73e-16 82.0
Msa0268840 AT5G08680.1 26.027 292 202 4 86 367 150 437 2.18e-16 81.6
Msa0268840 AT1G78900.1 28.740 254 156 7 137 372 219 465 1.11e-15 79.7
Msa0268840 AT1G78900.2 28.740 254 156 7 137 372 219 465 1.11e-15 79.7
Msa0268840 ATCG00480.1 23.446 354 255 6 83 424 85 434 2.88e-13 72.0

Find 104 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGTAAGTGAGGGTTATT+TGG 0.166311 2_2:+70414741 Msa0268840:CDS
TGTAGGCATTGCTTTGAATT+TGG 0.201612 2_2:+70414627 Msa0268840:CDS
GACGGCATTGCTCGTATTTA+TGG 0.205588 2_2:+70414556 Msa0268840:CDS
CCCAAATAACCCTCACTTAC+TGG 0.241036 2_2:-70414742 None:intergenic
TTATTTACATTCTCGTCTTT+TGG 0.245014 2_2:+70415323 Msa0268840:CDS
AAATGTTGGTGTTGTATTAA+TGG 0.258988 2_2:+70414657 Msa0268840:CDS
GGCCAGCGAGAATTAATTAT+TGG 0.267680 2_2:+70414934 Msa0268840:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 2_2:+70415581 Msa0268840:CDS
TCTCGCTGGCCACGCCCTAT+AGG 0.298734 2_2:-70414922 None:intergenic
GCCAGAGCTGCACCTGTATA+AGG 0.317929 2_2:-70415165 None:intergenic
CTCGCTGGCCACGCCCTATA+GGG 0.318797 2_2:-70414921 None:intergenic
TTTACCAGCTACCTGTTTCA+TGG 0.322039 2_2:-70415571 None:intergenic
ATTGATTCTATGATCCCTAT+AGG 0.359827 2_2:+70414907 Msa0268840:CDS
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 2_2:-70415241 None:intergenic
GCCAGCGAGAATTAATTATT+GGG 0.365780 2_2:+70414935 Msa0268840:CDS
CCTGATTGGGTCTCAACTAT+TGG 0.368964 2_2:-70415399 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 2_2:+70415587 Msa0268840:CDS
CACAGTGAGAGGAGCTGATT+GGG 0.390940 2_2:-70415717 None:intergenic
ATTTCTCCTCGACCATCAAT+AGG 0.391542 2_2:-70414790 None:intergenic
AATGTTGGTGTTGTATTAAT+GGG 0.391664 2_2:+70414658 Msa0268840:CDS
TCCTTATACAGGTGCAGCTC+TGG 0.392160 2_2:+70415164 Msa0268840:CDS
GCCCTAGCTAAACCTATTGA+TGG 0.393369 2_2:+70414778 Msa0268840:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 2_2:+70415399 Msa0268840:CDS
AGATACAATTCTCAATCAAC+AGG 0.401486 2_2:+70414990 Msa0268840:CDS
TCAAATTAAAGCCATGAAAC+AGG 0.408465 2_2:+70415560 Msa0268840:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 2_2:-70415291 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 2_2:-70415413 None:intergenic
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 2_2:+70415354 Msa0268840:CDS
CCAGTAAGTGAGGGTTATTT+GGG 0.424091 2_2:+70414742 Msa0268840:CDS
ATTATTGGGGACAGACAAAC+AGG 0.427629 2_2:+70414949 Msa0268840:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 2_2:-70415457 None:intergenic
TTGATTCTATGATCCCTATA+GGG 0.437674 2_2:+70414908 Msa0268840:CDS
CCACAGTGAGAGGAGCTGAT+TGG 0.438205 2_2:-70415718 None:intergenic
AGGCTCATACACGGAACGTC+TGG 0.440884 2_2:-70414863 None:intergenic
GGTATTTCCGTTTCCAGAGT+TGG 0.443512 2_2:+70415528 Msa0268840:CDS
GTAATGGAAATTACATTAGT+AGG 0.444650 2_2:-70415441 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 2_2:+70415024 Msa0268840:CDS
TAAAGCTACGCAAAATCAAT+TGG 0.449089 2_2:+70415659 Msa0268840:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 2_2:-70415263 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 2_2:-70415412 None:intergenic
GGAAGTTCGGTAAAAGCAAC+AGG 0.457398 2_2:+70414703 Msa0268840:CDS
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 2_2:-70415238 None:intergenic
CAATACCTCGCTCCTTATAC+AGG 0.462710 2_2:+70415153 Msa0268840:CDS
CGTGTATGAGCCTCTTCAAA+CGG 0.465005 2_2:+70414873 Msa0268840:CDS
TCGAGGAGAAATTTCAGCTT+CGG 0.476522 2_2:+70414801 Msa0268840:CDS
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 2_2:+70415291 Msa0268840:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 2_2:-70415352 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 2_2:-70415535 None:intergenic
TATATTGCTCAATACGTTCA+CGG 0.487151 2_2:-70414486 None:intergenic
GCGAGGTATTGTAATGTAGC+TGG 0.497569 2_2:-70415141 None:intergenic
TTCCGTTTCCAGAGTTGGAT+CGG 0.499691 2_2:+70415533 Msa0268840:CDS
GGTGTTGTATTAATGGGTGA+TGG 0.501676 2_2:+70414664 Msa0268840:CDS
ACTAATTTCATCTGCACGAA+TGG 0.507471 2_2:-70414455 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 2_2:+70415483 Msa0268840:CDS
GCTGATACAAGAGGGAAGTT+CGG 0.510716 2_2:+70414690 Msa0268840:CDS
GTGTATGAGCCTCTTCAAAC+GGG 0.511475 2_2:+70414874 Msa0268840:CDS
GTAACTACTTTACAAGAAAG+AGG 0.516144 2_2:+70415075 Msa0268840:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 2_2:-70415203 None:intergenic
TTGAGCCGCCGATCCAACTC+TGG 0.524235 2_2:-70415541 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 2_2:-70415237 None:intergenic
GAAATACCCACATTAATAGC+TGG 0.538501 2_2:-70415513 None:intergenic
TTATGGTCTTGATGAAGTAA+TGG 0.538951 2_2:+70414573 Msa0268840:CDS
CCCCAATAATTAATTCTCGC+TGG 0.539649 2_2:-70414936 None:intergenic
GGAACGTCTGGAAATAATAC+CGG 0.540181 2_2:-70414851 None:intergenic
TTTACAAGAAAGAGGGGCAA+TGG 0.541624 2_2:+70415083 Msa0268840:CDS
GACCATCAATAGGTTTAGCT+AGG 0.542268 2_2:-70414780 None:intergenic
AATGGAGTACACTATTATAG+TGG 0.544433 2_2:+70415101 Msa0268840:CDS
AGCATCTTCTGTGGCTCAAG+TGG 0.546125 2_2:+70415053 Msa0268840:CDS
ATCTGTTCTTCCACAGTGAG+AGG 0.551959 2_2:-70415728 None:intergenic
AATGTAATTTCCATTACAGA+TGG 0.557336 2_2:+70415447 Msa0268840:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 2_2:+70415567 Msa0268840:CDS
ATTAATCGAATCTCCGCTCC+CGG 0.560113 2_2:+70414832 Msa0268840:CDS
TTAAGTTCTCAGTTAGGTGA+AGG 0.563580 2_2:+70415360 Msa0268840:CDS
CGATCCCTCCAAACAAGCAC+AGG 0.574680 2_2:+70415233 Msa0268840:CDS
TGCTCAGATACCAGTAAGTG+AGG 0.577261 2_2:+70414732 Msa0268840:CDS
TAACTACTTTACAAGAAAGA+GGG 0.578222 2_2:+70415076 Msa0268840:CDS
TGAATTAGTCGAATTTGAAG+AGG 0.580561 2_2:+70414600 Msa0268840:CDS
GCAATAAGTCCCGTTTGAAG+AGG 0.589598 2_2:-70414883 None:intergenic
ACAGGTACTGTACTTCAAGT+AGG 0.592569 2_2:+70414532 Msa0268840:CDS
TCTGGAAATAATACCGGGAG+CGG 0.593297 2_2:-70414845 None:intergenic
GAATTTGAAGAGGGTACTGT+AGG 0.593991 2_2:+70414610 Msa0268840:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 2_2:+70415273 Msa0268840:CDS
ACCATCAATAGGTTTAGCTA+GGG 0.601516 2_2:-70414779 None:intergenic
ATCAGACCAGCTATTAATGT+GGG 0.604091 2_2:+70415507 Msa0268840:CDS
GAATTAGTCGAATTTGAAGA+GGG 0.619600 2_2:+70414601 Msa0268840:CDS
GCTAAACCTATTGATGGTCG+AGG 0.620970 2_2:+70414784 Msa0268840:CDS
GAACGTCTGGAAATAATACC+GGG 0.622363 2_2:-70414850 None:intergenic
AATCAGACCAGCTATTAATG+TGG 0.625394 2_2:+70415506 Msa0268840:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 2_2:-70415487 None:intergenic
TCTATGATCCCTATAGGGCG+TGG 0.628110 2_2:+70414913 Msa0268840:CDS
AACTACTTTACAAGAAAGAG+GGG 0.635218 2_2:+70415077 Msa0268840:CDS
CCAGCGAGAATTAATTATTG+GGG 0.636830 2_2:+70414936 Msa0268840:CDS
GGTCTTGATGAAGTAATGGC+AGG 0.640111 2_2:+70414577 Msa0268840:CDS
ACGCAAAATCAATTGGCAAG+AGG 0.645378 2_2:+70415666 Msa0268840:CDS
CGTTTGAAGAGGCTCATACA+CGG 0.655862 2_2:-70414872 None:intergenic
CGTTTCCAGAGTTGGATCGG+CGG 0.663289 2_2:+70415536 Msa0268840:CDS
GATGGTTTGCTGATACAAGA+GGG 0.671964 2_2:+70414682 Msa0268840:CDS
GCTCAGATACCAGTAAGTGA+GGG 0.673181 2_2:+70414733 Msa0268840:CDS
TGATGGTTTGCTGATACAAG+AGG 0.676056 2_2:+70414681 Msa0268840:CDS
CTGCACCTGTATAAGGAGCG+AGG 0.679934 2_2:-70415158 None:intergenic
ACTGTACTTCAAGTAGGCGA+CGG 0.682410 2_2:+70414538 Msa0268840:CDS
CCAATCAGCTCCTCTCACTG+TGG 0.687803 2_2:+70415718 Msa0268840:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 2_2:-70415288 None:intergenic
GATACAATTCTCAATCAACA+GGG 0.744742 2_2:+70414991 Msa0268840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTACAATTTTTACTT+CGG - chr2_2:70414515-70414534 None:intergenic 15.0%
!!! TGTATTTACAATTTTTACTT+CGG - chr2_2:70414515-70414534 None:intergenic 15.0%
!! GAAGTAAAAATTGTAAATAC+AGG + chr2_2:70414514-70414533 Msa0268840:CDS 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr2_2:70415313-70415332 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr2_2:70415587-70415606 Msa0268840:CDS 20.0%
!! GAAGTAAAAATTGTAAATAC+AGG + chr2_2:70414514-70414533 Msa0268840:CDS 20.0%
!! ATGTAAATAAAAAACATCTC+CGG - chr2_2:70415313-70415332 None:intergenic 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + chr2_2:70415587-70415606 Msa0268840:CDS 20.0%
!! AATTTGGAATCCAAAAATGT+TGG + chr2_2:70414643-70414662 Msa0268840:CDS 25.0%
!! TAATACAACACCAACATTTT+TGG - chr2_2:70414656-70414675 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG + chr2_2:70414657-70414676 Msa0268840:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG + chr2_2:70414658-70414677 Msa0268840:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr2_2:70415024-70415043 Msa0268840:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr2_2:70415076-70415095 Msa0268840:CDS 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr2_2:70415312-70415331 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr2_2:70415323-70415342 Msa0268840:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr2_2:70415355-70415374 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr2_2:70415444-70415463 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr2_2:70415447-70415466 Msa0268840:CDS 25.0%
!! AATTTGGAATCCAAAAATGT+TGG + chr2_2:70414643-70414662 Msa0268840:CDS 25.0%
!! TAATACAACACCAACATTTT+TGG - chr2_2:70414656-70414675 None:intergenic 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG + chr2_2:70414657-70414676 Msa0268840:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG + chr2_2:70414658-70414677 Msa0268840:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + chr2_2:70415024-70415043 Msa0268840:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + chr2_2:70415076-70415095 Msa0268840:CDS 25.0%
! TGTAAATAAAAAACATCTCC+GGG - chr2_2:70415312-70415331 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + chr2_2:70415323-70415342 Msa0268840:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - chr2_2:70415355-70415374 None:intergenic 25.0%
!! GTAATGGAAATTACATTAGT+AGG - chr2_2:70415444-70415463 None:intergenic 25.0%
! AATGTAATTTCCATTACAGA+TGG + chr2_2:70415447-70415466 Msa0268840:CDS 25.0%
TATATTGCTCAATACGTTCA+CGG - chr2_2:70414489-70414508 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG + chr2_2:70414573-70414592 Msa0268840:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG + chr2_2:70414600-70414619 Msa0268840:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG + chr2_2:70414601-70414620 Msa0268840:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG + chr2_2:70414907-70414926 Msa0268840:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG + chr2_2:70414908-70414927 Msa0268840:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + chr2_2:70414990-70415009 Msa0268840:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr2_2:70414991-70415010 Msa0268840:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr2_2:70415075-70415094 Msa0268840:CDS 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr2_2:70415077-70415096 Msa0268840:CDS 30.0%
AATGGAGTACACTATTATAG+TGG + chr2_2:70415101-70415120 Msa0268840:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr2_2:70415266-70415285 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr2_2:70415354-70415373 Msa0268840:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr2_2:70415460-70415479 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr2_2:70415473-70415492 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr2_2:70415560-70415579 Msa0268840:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr2_2:70415581-70415600 Msa0268840:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr2_2:70415659-70415678 Msa0268840:CDS 30.0%
TATATTGCTCAATACGTTCA+CGG - chr2_2:70414489-70414508 None:intergenic 30.0%
! TTATGGTCTTGATGAAGTAA+TGG + chr2_2:70414573-70414592 Msa0268840:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG + chr2_2:70414600-70414619 Msa0268840:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG + chr2_2:70414601-70414620 Msa0268840:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG + chr2_2:70414907-70414926 Msa0268840:CDS 30.0%
TTGATTCTATGATCCCTATA+GGG + chr2_2:70414908-70414927 Msa0268840:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + chr2_2:70414990-70415009 Msa0268840:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + chr2_2:70414991-70415010 Msa0268840:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + chr2_2:70415075-70415094 Msa0268840:CDS 30.0%
AACTACTTTACAAGAAAGAG+GGG + chr2_2:70415077-70415096 Msa0268840:CDS 30.0%
AATGGAGTACACTATTATAG+TGG + chr2_2:70415101-70415120 Msa0268840:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG - chr2_2:70415266-70415285 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + chr2_2:70415354-70415373 Msa0268840:CDS 30.0%
AAATATTTGGCCATCTGTAA+TGG - chr2_2:70415460-70415479 None:intergenic 30.0%
GATCGGCAGATAAAAATATT+TGG - chr2_2:70415473-70415492 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + chr2_2:70415560-70415579 Msa0268840:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + chr2_2:70415581-70415600 Msa0268840:CDS 30.0%
TAAAGCTACGCAAAATCAAT+TGG + chr2_2:70415659-70415678 Msa0268840:CDS 30.0%
ACTAATTTCATCTGCACGAA+TGG - chr2_2:70414458-70414477 None:intergenic 35.0%
! TGTAGGCATTGCTTTGAATT+TGG + chr2_2:70414627-70414646 Msa0268840:CDS 35.0%
ACCATCAATAGGTTTAGCTA+GGG - chr2_2:70414782-70414801 None:intergenic 35.0%
GCCAGCGAGAATTAATTATT+GGG + chr2_2:70414935-70414954 Msa0268840:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + chr2_2:70414936-70414955 Msa0268840:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr2_2:70415206-70415225 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr2_2:70415360-70415379 Msa0268840:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr2_2:70415490-70415509 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr2_2:70415506-70415525 Msa0268840:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr2_2:70415507-70415526 Msa0268840:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr2_2:70415516-70415535 None:intergenic 35.0%
ACTAATTTCATCTGCACGAA+TGG - chr2_2:70414458-70414477 None:intergenic 35.0%
! TGTAGGCATTGCTTTGAATT+TGG + chr2_2:70414627-70414646 Msa0268840:CDS 35.0%
ACCATCAATAGGTTTAGCTA+GGG - chr2_2:70414782-70414801 None:intergenic 35.0%
GCCAGCGAGAATTAATTATT+GGG + chr2_2:70414935-70414954 Msa0268840:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + chr2_2:70414936-70414955 Msa0268840:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - chr2_2:70415206-70415225 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + chr2_2:70415360-70415379 Msa0268840:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - chr2_2:70415490-70415509 None:intergenic 35.0%
AATCAGACCAGCTATTAATG+TGG + chr2_2:70415506-70415525 Msa0268840:CDS 35.0%
ATCAGACCAGCTATTAATGT+GGG + chr2_2:70415507-70415526 Msa0268840:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - chr2_2:70415516-70415535 None:intergenic 35.0%
! ACAGGTACTGTACTTCAAGT+AGG + chr2_2:70414532-70414551 Msa0268840:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG + chr2_2:70414610-70414629 Msa0268840:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG + chr2_2:70414664-70414683 Msa0268840:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr2_2:70414681-70414700 Msa0268840:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr2_2:70414682-70414701 Msa0268840:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + chr2_2:70414741-70414760 Msa0268840:CDS 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + chr2_2:70414742-70414761 Msa0268840:CDS 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr2_2:70414783-70414802 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr2_2:70414793-70414812 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr2_2:70414801-70414820 Msa0268840:CDS 40.0%
GAACGTCTGGAAATAATACC+GGG - chr2_2:70414853-70414872 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr2_2:70414854-70414873 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + chr2_2:70414934-70414953 Msa0268840:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - chr2_2:70414939-70414958 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr2_2:70414949-70414968 Msa0268840:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr2_2:70415044-70415063 Msa0268840:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr2_2:70415083-70415102 Msa0268840:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr2_2:70415415-70415434 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr2_2:70415416-70415435 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr2_2:70415574-70415593 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr2_2:70415666-70415685 Msa0268840:CDS 40.0%
! ACAGGTACTGTACTTCAAGT+AGG + chr2_2:70414532-70414551 Msa0268840:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG + chr2_2:70414610-70414629 Msa0268840:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG + chr2_2:70414664-70414683 Msa0268840:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + chr2_2:70414681-70414700 Msa0268840:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + chr2_2:70414682-70414701 Msa0268840:CDS 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + chr2_2:70414741-70414760 Msa0268840:CDS 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + chr2_2:70414742-70414761 Msa0268840:CDS 40.0%
GACCATCAATAGGTTTAGCT+AGG - chr2_2:70414783-70414802 None:intergenic 40.0%
ATTTCTCCTCGACCATCAAT+AGG - chr2_2:70414793-70414812 None:intergenic 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + chr2_2:70414801-70414820 Msa0268840:CDS 40.0%
GAACGTCTGGAAATAATACC+GGG - chr2_2:70414853-70414872 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - chr2_2:70414854-70414873 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + chr2_2:70414934-70414953 Msa0268840:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - chr2_2:70414939-70414958 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + chr2_2:70414949-70414968 Msa0268840:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + chr2_2:70415044-70415063 Msa0268840:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + chr2_2:70415083-70415102 Msa0268840:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG - chr2_2:70415415-70415434 None:intergenic 40.0%
AAGCTGAAACATCTCCTGAT+TGG - chr2_2:70415416-70415435 None:intergenic 40.0%
TTTACCAGCTACCTGTTTCA+TGG - chr2_2:70415574-70415593 None:intergenic 40.0%
ACGCAAAATCAATTGGCAAG+AGG + chr2_2:70415666-70415685 Msa0268840:CDS 40.0%
ACTGTACTTCAAGTAGGCGA+CGG + chr2_2:70414538-70414557 Msa0268840:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG + chr2_2:70414556-70414575 Msa0268840:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG + chr2_2:70414577-70414596 Msa0268840:CDS 45.0%
GCTGATACAAGAGGGAAGTT+CGG + chr2_2:70414690-70414709 Msa0268840:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr2_2:70414703-70414722 Msa0268840:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG + chr2_2:70414732-70414751 Msa0268840:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + chr2_2:70414733-70414752 Msa0268840:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - chr2_2:70414745-70414764 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr2_2:70414778-70414797 Msa0268840:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr2_2:70414784-70414803 Msa0268840:CDS 45.0%
ATTAATCGAATCTCCGCTCC+CGG + chr2_2:70414832-70414851 Msa0268840:CDS 45.0%
TCTGGAAATAATACCGGGAG+CGG - chr2_2:70414848-70414867 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG - chr2_2:70414875-70414894 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + chr2_2:70414873-70414892 Msa0268840:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + chr2_2:70414874-70414893 Msa0268840:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr2_2:70414886-70414905 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr2_2:70415144-70415163 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr2_2:70415153-70415172 Msa0268840:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr2_2:70415240-70415259 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr2_2:70415241-70415260 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr2_2:70415273-70415292 Msa0268840:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr2_2:70415402-70415421 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr2_2:70415399-70415418 Msa0268840:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr2_2:70415483-70415502 Msa0268840:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr2_2:70415528-70415547 Msa0268840:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr2_2:70415533-70415552 Msa0268840:CDS 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr2_2:70415567-70415586 Msa0268840:CDS 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr2_2:70415731-70415750 None:intergenic 45.0%
ACTGTACTTCAAGTAGGCGA+CGG + chr2_2:70414538-70414557 Msa0268840:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG + chr2_2:70414556-70414575 Msa0268840:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG + chr2_2:70414577-70414596 Msa0268840:CDS 45.0%
GCTGATACAAGAGGGAAGTT+CGG + chr2_2:70414690-70414709 Msa0268840:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + chr2_2:70414703-70414722 Msa0268840:CDS 45.0%
TGCTCAGATACCAGTAAGTG+AGG + chr2_2:70414732-70414751 Msa0268840:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + chr2_2:70414733-70414752 Msa0268840:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - chr2_2:70414745-70414764 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + chr2_2:70414778-70414797 Msa0268840:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + chr2_2:70414784-70414803 Msa0268840:CDS 45.0%
ATTAATCGAATCTCCGCTCC+CGG + chr2_2:70414832-70414851 Msa0268840:CDS 45.0%
TCTGGAAATAATACCGGGAG+CGG - chr2_2:70414848-70414867 None:intergenic 45.0%
CGTTTGAAGAGGCTCATACA+CGG - chr2_2:70414875-70414894 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + chr2_2:70414873-70414892 Msa0268840:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + chr2_2:70414874-70414893 Msa0268840:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - chr2_2:70414886-70414905 None:intergenic 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - chr2_2:70415144-70415163 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + chr2_2:70415153-70415172 Msa0268840:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - chr2_2:70415240-70415259 None:intergenic 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - chr2_2:70415241-70415260 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + chr2_2:70415273-70415292 Msa0268840:CDS 45.0%
CCTGATTGGGTCTCAACTAT+TGG - chr2_2:70415402-70415421 None:intergenic 45.0%
CCAATAGTTGAGACCCAATC+AGG + chr2_2:70415399-70415418 Msa0268840:CDS 45.0%
TCTGCCGATCTATTCAATGC+TGG + chr2_2:70415483-70415502 Msa0268840:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + chr2_2:70415528-70415547 Msa0268840:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + chr2_2:70415533-70415552 Msa0268840:CDS 45.0%
AAAGCCATGAAACAGGTAGC+TGG + chr2_2:70415567-70415586 Msa0268840:CDS 45.0%
ATCTGTTCTTCCACAGTGAG+AGG - chr2_2:70415731-70415750 None:intergenic 45.0%
TCTATGATCCCTATAGGGCG+TGG + chr2_2:70414913-70414932 Msa0268840:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr2_2:70415053-70415072 Msa0268840:CDS 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr2_2:70415164-70415183 Msa0268840:CDS 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr2_2:70415244-70415263 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr2_2:70415720-70415739 None:intergenic 50.0%
TCTATGATCCCTATAGGGCG+TGG + chr2_2:70414913-70414932 Msa0268840:CDS 50.0%
AGCATCTTCTGTGGCTCAAG+TGG + chr2_2:70415053-70415072 Msa0268840:CDS 50.0%
TCCTTATACAGGTGCAGCTC+TGG + chr2_2:70415164-70415183 Msa0268840:CDS 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - chr2_2:70415244-70415263 None:intergenic 50.0%
CACAGTGAGAGGAGCTGATT+GGG - chr2_2:70415720-70415739 None:intergenic 50.0%
AGGCTCATACACGGAACGTC+TGG - chr2_2:70414866-70414885 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr2_2:70415161-70415180 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr2_2:70415168-70415187 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr2_2:70415233-70415252 Msa0268840:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr2_2:70415538-70415557 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr2_2:70415536-70415555 Msa0268840:CDS 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr2_2:70415721-70415740 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr2_2:70415718-70415737 Msa0268840:CDS 55.0%
AGGCTCATACACGGAACGTC+TGG - chr2_2:70414866-70414885 None:intergenic 55.0%
CTGCACCTGTATAAGGAGCG+AGG - chr2_2:70415161-70415180 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - chr2_2:70415168-70415187 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + chr2_2:70415233-70415252 Msa0268840:CDS 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - chr2_2:70415538-70415557 None:intergenic 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + chr2_2:70415536-70415555 Msa0268840:CDS 55.0%
CCACAGTGAGAGGAGCTGAT+TGG - chr2_2:70415721-70415740 None:intergenic 55.0%
CCAATCAGCTCCTCTCACTG+TGG + chr2_2:70415718-70415737 Msa0268840:CDS 55.0%
TTGAGCCGCCGATCCAACTC+TGG - chr2_2:70415544-70415563 None:intergenic 60.0%
TTGAGCCGCCGATCCAACTC+TGG - chr2_2:70415544-70415563 None:intergenic 60.0%
CTCGCTGGCCACGCCCTATA+GGG - chr2_2:70414924-70414943 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - chr2_2:70414925-70414944 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr2_2:70415291-70415310 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr2_2:70415291-70415310 Msa0268840:CDS 65.0%
CTCGCTGGCCACGCCCTATA+GGG - chr2_2:70414924-70414943 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - chr2_2:70414925-70414944 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - chr2_2:70415291-70415310 None:intergenic 65.0%
CCAGGTCGCGAAGCGTATCC+CGG + chr2_2:70415291-70415310 Msa0268840:CDS 65.0%
CCGGGATACGCTTCGCGACC+TGG - chr2_2:70415294-70415313 None:intergenic 70.0%
CCGGGATACGCTTCGCGACC+TGG - chr2_2:70415294-70415313 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 70414448 70415752 70414448 ID=Msa0268840;Name=Msa0268840
chr2_2 mRNA 70414448 70415752 70414448 ID=Msa0268840-mRNA-1;Parent=Msa0268840;Name=Msa0268840-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|434
chr2_2 exon 70414448 70415752 70414448 ID=Msa0268840-mRNA-1:exon:22629;Parent=Msa0268840-mRNA-1
chr2_2 CDS 70414448 70415752 70414448 ID=Msa0268840-mRNA-1:cds;Parent=Msa0268840-mRNA-1
Gene Sequence

>Msa0268840

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCGTCTATTAATCGAATCTCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCTTTTGCACAATTCGCTTCTGATCTCGATAAAGCTACGCAAAATCAATTGGCAAGAGGTCAACGATTGCGCGAGTTGCTTAAACATCCCAATCAGCTCCTCTCACTGTGGAAGAACAGATAA

Protein sequence

>Msa0268840

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESSINRISAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKHPNQLLSLWKNR*