AlfalfaGEDB | Msa1086860

M. sativa cultivar zhongmu-4 / Msa1086860

KEGG: K02634
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
PFAM: PF03040.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086860	QCE13741.1	87.404	389	30	1	1	389	15	384	0.0	694

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086860	sp\|P06669\|CYF_VICFA	96.562	320	11	0	70	389	1	320	0.0	631

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086860	A0A4D6NLC9	87.404	389	30	1	1	389	15	384	0.0	694

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002110	Msa1086860	0.848511	5.852228e-60	-8.615850e-47
Msa0002690	Msa1086860	0.862743	4.081838e-64	-8.615850e-47
Msa0002700	Msa1086860	0.862942	3.545373e-64	-8.615850e-47
Msa0004180	Msa1086860	0.850091	2.124610e-60	-8.615850e-47
Msa0005500	Msa1086860	0.807638	4.584941e-50	-8.615850e-47
Msa0011410	Msa1086860	0.844348	7.993201e-59	-8.615850e-47
Msa0011440	Msa1086860	0.846247	2.449144e-59	-8.615850e-47
Msa0011450	Msa1086860	0.845694	3.460630e-59	-8.615850e-47
Msa0016830	Msa1086860	0.822954	1.796414e-53	-8.615850e-47
Msa0018010	Msa1086860	0.800852	1.186790e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086860	MtrunA17_CPg0492851	99.692	325	1	0	65	389	1	325	0.0	659
Msa1086860	MtrunA17_Chr4g0015731	99.692	325	1	0	65	389	1	325	0.0	659
Msa1086860	MtrunA17_Chr4g0016821	99.692	325	1	0	65	389	1	325	0.0	659
Msa1086860	MtrunA17_Chr4g0016981	83.186	113	4	1	108	220	42	139	2.08e-58	187
Msa1086860	MtrunA17_Chr4g0016991	95.385	65	3	0	325	389	1	65	4.08e-36	126
Msa1086860	MtrunA17_Chr5g0403621	96.667	60	2	0	1	60	86	145	4.59e-35	127
Msa1086860	MtrunA17_Chr4g0016811	98.333	60	1	0	1	60	95	154	2.12e-34	127
Msa1086860	MtrunA17_CPg0492871	98.333	60	1	0	1	60	86	145	2.37e-34	127
Msa1086860	MtrunA17_Chr4g0015721	98.333	60	1	0	1	60	86	145	2.37e-34	127
Msa1086860	MtrunA17_Chr3g0141111	94.737	57	3	0	1	57	15	71	3.31e-33	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086860	ATCG00540.1	90.625	320	30	0	70	389	1	320	0.0	595
Msa1086860	ATCG00530.1	67.241	58	19	0	3	60	88	145	2.46e-18	83.6

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Find 87 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCATTTCTAGTTTGCA+TGG	0.489913	7_2:+87597050	None:intergenic
AAAATCCGAGAGAAGCTACC+GGG	0.554646	7_2:-87596915	Msa1086860:CDS
AAAATTATACGAAAAGAAAA+AGG	0.339453	7_2:-87596403	Msa1086860:CDS
AAATATCCTATATACGTAGG+CGG	0.616381	7_2:-87596511	Msa1086860:CDS
AAATCGTATGGATACGGTCT+TGG	0.446811	7_2:+87597649	None:intergenic
AACAGACCTTGTACACGTAA+CGG	0.600684	7_2:+87596202	None:intergenic
AACTCATTATTCTTAACTCT+TGG	0.323937	7_2:-87597560	Msa1086860:CDS
AACTGCTTCAAATACAGTAT+CGG	0.494328	7_2:+87596822	None:intergenic
AATAACGATAGTGGATGCAT+CGG	0.634066	7_2:-87596371	Msa1086860:CDS
AATATCCTATATACGTAGGC+GGG	0.517081	7_2:-87596510	Msa1086860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCAAAATCGTATGGATA+CGG	+	chr7_2:87596161-87596180	None:intergenic	30.0%
TACAGAAATGCAAAATCGTA+TGG	+	chr7_2:87596167-87596186	None:intergenic	30.0%
CTAAGTGGTTATTCTATTAG+GGG	-	chr7_2:87596210-87596229	Msa1086860:CDS	30.0%
TGATAAATCACTACAAGTGA+CGG	+	chr7_2:87596507-87596526	None:intergenic	30.0%
TCGTATTCTTCCTATATTCT+AGG	-	chr7_2:87596633-87596652	Msa1086860:CDS	30.0%
AATAAGATTAGGTAGGTTAC+TGG	+	chr7_2:87596703-87596722	None:intergenic	30.0%
AATGGGATATGCATTTGAAA+TGG	+	chr7_2:87596847-87596866	None:intergenic	30.0%
TAATAAGCCTGTAGATATTG+AGG	-	chr7_2:87596938-87596957	Msa1086860:CDS	30.0%
AACTGCTTCAAATACAGTAT+CGG	+	chr7_2:87596982-87597001	None:intergenic	30.0%
GTTAAACAAGTTCTTGCTAA+TGG	-	chr7_2:87597026-87597045	Msa1086860:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	87596108	87597715	87596108	ID=Msa1086860;Name=Msa1086860
chr7_2	mRNA	87596108	87597715	87596108	ID=Msa1086860-mRNA-1;Parent=Msa1086860;Name=Msa1086860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|0\|0\|2\|0\|389
chr7_2	exon	87597535	87597715	87597535	ID=Msa1086860-mRNA-1:exon:23936;Parent=Msa1086860-mRNA-1
chr7_2	exon	87596108	87597096	87596108	ID=Msa1086860-mRNA-1:exon:23935;Parent=Msa1086860-mRNA-1
chr7_2	CDS	87597535	87597715	87597535	ID=Msa1086860-mRNA-1:cds;Parent=Msa1086860-mRNA-1
chr7_2	CDS	87596108	87597096	87596108	ID=Msa1086860-mRNA-1:cds;Parent=Msa1086860-mRNA-1

Gene Sequence

>Msa1086860

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTAGATATTGAGGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGGTAATTTGTCTTTTCAAAGCTATCGTCCCACAAAAAAAAATATTCTTGTGGTAGGCCCCGTTCCTGGGAAGAAATATAGTGAAATTACCTTTCCTATTCTTTCTCCAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGGTATAGTAAATAAAATTATACGAAAAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1086860

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*