AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0054110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054110 MtrunA17_Chr1g0150471 95.570 316 14 0 1 316 1 316 0.0 633
Msa0054110 MtrunA17_Chr3g0136701 55.077 325 102 8 1 316 1 290 1.92e-102 302
Msa0054110 MtrunA17_Chr4g0072871 46.089 358 144 7 4 315 20 374 3.48e-94 284
Msa0054110 MtrunA17_Chr7g0220721 62.500 88 33 0 4 91 24 111 5.15e-35 131
Msa0054110 MtrunA17_Chr7g0220721 66.216 74 17 1 250 315 322 395 9.11e-24 100
Msa0054110 MtrunA17_Chr1g0155811 46.392 97 42 1 6 92 5 101 1.39e-22 95.1
Msa0054110 MtrunA17_Chr5g0429341 36.923 130 76 2 5 130 4 131 6.94e-21 92.4
Msa0054110 MtrunA17_Chr5g0405151 44.565 92 41 2 5 88 4 93 3.75e-19 83.6
Msa0054110 MtrunA17_Chr4g0035651 43.299 97 45 1 6 92 5 101 5.93e-19 84.0
Msa0054110 MtrunA17_Chr2g0314671 41.667 96 47 1 6 92 5 100 3.71e-18 83.2
Msa0054110 MtrunA17_Chr4g0033641 31.928 166 97 3 6 162 5 163 3.91e-18 82.0
Msa0054110 MtrunA17_Chr3g0145061 40.000 105 53 1 6 100 5 109 1.02e-17 80.5
Msa0054110 MtrunA17_Chr3g0120711 41.111 90 52 1 5 94 4 92 1.48e-17 82.8
Msa0054110 MtrunA17_Chr3g0142221 32.394 142 79 2 6 136 5 140 6.51e-17 78.2
Msa0054110 MtrunA17_Chr7g0268691 39.326 89 53 1 6 94 20 107 6.93e-17 80.5
Msa0054110 MtrunA17_Chr7g0268691 35.659 129 69 4 171 296 252 369 5.98e-12 65.9
Msa0054110 MtrunA17_Chr2g0329511 40.217 92 46 1 6 88 5 96 7.33e-16 75.9
Msa0054110 MtrunA17_Chr7g0251781 38.710 93 52 1 6 98 5 92 1.73e-14 73.6
Msa0054110 MtrunA17_Chr2g0322941 28.910 211 118 8 5 205 43 231 1.70e-13 68.9
Msa0054110 MtrunA17_Chr5g0431351 49.275 69 32 1 232 297 148 216 6.55e-13 67.0
Msa0054110 MtrunA17_Chr1g0209071 36.486 74 47 0 4 77 3 76 1.37e-12 67.4
Msa0054110 MtrunA17_Chr1g0209861 46.341 82 37 2 221 300 351 427 1.18e-11 65.1
Msa0054110 MtrunA17_Chr8g0390971 68.182 44 14 0 255 298 358 401 2.02e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0054110 AT5G24930.1 53.714 350 104 14 1 301 1 341 3.35e-96 289
Msa0054110 AT2G24790.1 53.074 309 103 11 2 303 4 277 9.08e-95 283
Msa0054110 AT3G02380.1 42.730 337 164 7 4 315 14 346 2.23e-82 253
Msa0054110 AT5G57660.1 43.103 348 153 10 2 315 18 354 6.48e-73 229
Msa0054110 AT5G15850.1 40.805 348 163 10 6 315 12 354 5.74e-70 221
Msa0054110 AT5G15840.1 39.335 361 160 13 6 315 20 372 1.61e-69 221
Msa0054110 AT2G24790.2 50.237 211 74 7 2 207 4 188 1.04e-57 186
Msa0054110 AT5G15840.2 34.855 241 114 9 6 211 20 252 2.47e-34 127
Msa0054110 AT2G21320.1 44.211 95 43 2 5 91 4 96 5.39e-19 83.2
Msa0054110 AT4G38960.1 43.158 95 44 2 5 91 4 96 1.09e-18 82.8
Msa0054110 AT4G38960.6 43.158 95 44 2 5 91 4 96 1.09e-18 82.8
Msa0054110 AT1G78600.1 42.708 96 46 1 6 92 5 100 1.85e-18 84.3
Msa0054110 AT1G78600.2 42.708 96 46 1 6 92 5 100 2.40e-18 84.3
Msa0054110 AT1G75540.1 40.404 99 47 1 6 92 5 103 1.26e-17 82.4
Msa0054110 AT2G47890.1 40.659 91 52 1 4 94 11 99 1.62e-17 82.4
Msa0054110 AT2G47890.1 56.000 50 22 0 250 299 282 331 6.08e-11 63.2
Msa0054110 AT2G47890.3 40.659 91 52 1 4 94 11 99 1.80e-17 81.6
Msa0054110 AT2G47890.2 40.659 91 52 1 4 94 11 99 2.43e-17 80.1
Msa0054110 AT2G33500.1 40.449 89 53 0 6 94 12 100 4.63e-17 81.6
Msa0054110 AT2G33500.1 50.794 63 30 1 238 299 339 401 5.66e-11 63.5
Msa0054110 AT2G33500.2 40.449 89 53 0 6 94 12 100 5.11e-17 81.3
Msa0054110 AT2G33500.2 50.794 63 30 1 238 299 338 400 5.75e-11 63.5
Msa0054110 AT3G21880.1 26.286 350 199 11 6 299 5 351 5.61e-17 80.9
Msa0054110 AT1G06040.1 43.478 92 43 1 6 88 5 96 1.12e-16 78.6
Msa0054110 AT1G06040.2 43.478 92 43 1 6 88 5 96 2.12e-16 76.3
Msa0054110 AT1G28050.1 40.449 89 53 0 6 94 9 97 2.13e-16 79.7
Msa0054110 AT5G48250.1 42.667 75 43 0 5 79 4 78 2.42e-16 79.3
Msa0054110 AT2G31380.1 29.798 198 79 6 6 143 5 202 8.08e-16 75.9
Msa0054110 AT3G07650.3 42.466 73 42 0 5 77 4 76 2.31e-15 76.3
Msa0054110 AT3G07650.2 42.466 73 42 0 5 77 4 76 2.31e-15 76.3
Msa0054110 AT3G07650.4 42.466 73 42 0 5 77 4 76 2.31e-15 76.3
Msa0054110 AT3G07650.1 42.466 73 42 0 5 77 4 76 2.31e-15 76.3
Msa0054110 AT4G15250.1 40.476 84 50 0 6 89 5 88 3.18e-15 75.5
Msa0054110 AT4G39070.1 38.776 98 50 1 5 92 4 101 2.29e-14 72.0
Msa0054110 AT1G68190.1 38.961 77 47 0 4 80 12 88 7.59e-14 71.6
Msa0054110 AT1G68190.3 38.961 77 47 0 4 80 12 88 7.59e-14 71.6
Msa0054110 AT1G68190.2 38.961 77 47 0 4 80 41 117 8.24e-14 72.0
Msa0054110 AT1G49130.1 53.968 63 29 0 236 298 259 321 1.19e-13 70.9
Msa0054110 AT1G49130.2 53.968 63 29 0 236 298 252 314 1.38e-13 70.9
Msa0054110 AT4G10240.1 36.275 102 46 2 6 92 5 102 2.05e-13 67.4
Msa0054110 AT1G73870.1 70.213 47 14 0 254 300 344 390 2.18e-13 70.5
Msa0054110 AT3G21880.3 36.364 88 46 1 6 83 9 96 7.47e-13 68.9
Msa0054110 AT3G21880.2 36.364 88 46 1 6 83 9 96 7.47e-13 68.9
Msa0054110 AT1G68520.1 64.583 48 17 0 255 302 357 404 5.49e-12 66.6
Msa0054110 AT5G14370.1 66.667 45 15 0 255 299 294 338 1.06e-11 65.5
Msa0054110 AT1G25440.1 69.767 43 13 0 255 297 361 403 2.93e-11 64.3

Find 95 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGAGATCAGGGAATTT+AGG 0.162993 1_2:-8679485 Msa0054100:five_prime_UTR
AGCAGCTGCGTCGGCTTTGC+AGG 0.207136 1_2:-8679273 Msa0054100:five_prime_UTR
GTATATGTTAATGATATATT+AGG 0.232906 1_2:+8680343 Msa0054110:three_prime_UTR
GCGAACCTTCCTTTAATTCT+AGG 0.237184 1_2:-8680060 Msa0054100:five_prime_UTR
GAAACTCGACCTAGAATTAA+AGG 0.252531 1_2:+8680051 Msa0054110:CDS
ATTTAGGGTTTGAAGGAGTT+TGG 0.272290 1_2:-8679469 Msa0054100:five_prime_UTR
AATTGAGATCAGGGAATTTA+GGG 0.282604 1_2:-8679484 Msa0054100:five_prime_UTR
GTGACGAAATCGTCAATTTC+GGG 0.319268 1_2:-8679524 Msa0054100:five_prime_UTR
TGTTGCTTTGGATGACTTGC+AGG 0.340517 1_2:-8679117 Msa0054100:five_prime_UTR
AGGAATTTATACATATAATA+AGG 0.345455 1_2:-8680459 Msa0054100:five_prime_UTR
AAGAAGCAGAAGCTGCTTCC+TGG 0.355450 1_2:+8679441 Msa0054110:CDS
ATGTATAAATTCCTTTGGTT+TGG 0.360369 1_2:+8680468 Msa0054110:three_prime_UTR
TCAGGGAATTTAGGGTTTGA+AGG 0.367060 1_2:-8679476 Msa0054100:five_prime_UTR
AGTGACGAAATCGTCAATTT+CGG 0.368521 1_2:-8679525 Msa0054100:five_prime_UTR
GACGCCATCTGCGGTGGTGC+CGG 0.374473 1_2:-8679585 Msa0054100:five_prime_UTR
CACCGCAGATGGCGTCGTTC+CGG 0.376246 1_2:+8679592 Msa0054110:CDS
CAATTCAATAAACAACAAAA+TGG 0.385236 1_2:+8679076 Msa0054110:exon
ATTATATGTATAAATTCCTT+TGG 0.388023 1_2:+8680463 Msa0054110:three_prime_UTR
GTGGCGGGAGGCGAGTTTGT+TGG 0.388480 1_2:-8679201 Msa0054100:five_prime_UTR
GCTGTTGTTGTGGTGGTGGA+AGG 0.394821 1_2:-8679372 Msa0054100:five_prime_UTR
GAGAGAAAAGAAAGAATAGA+AGG 0.401420 1_2:+8679986 Msa0054110:CDS
GAGTGTGACGCGGTGGTGGC+GGG 0.403622 1_2:-8679216 Msa0054100:five_prime_UTR
TAGTGAGAGTAATTGAGATC+AGG 0.412297 1_2:-8679494 Msa0054100:five_prime_UTR
ACGGCAGAATAGTGTTGCTT+TGG 0.415438 1_2:-8679129 Msa0054100:five_prime_UTR
CAGAGAAGAATGATTGTTGT+TGG 0.418301 1_2:-8679394 Msa0054100:five_prime_UTR
AGCTTCTGCTTCTTCGTTGG+TGG 0.421356 1_2:-8679432 Msa0054100:five_prime_UTR
CCGTCTCTGTCGCCGTCGTT+TGG 0.426542 1_2:-8679900 Msa0054100:five_prime_UTR
ACGCCATCTGCGGTGGTGCC+GGG 0.428709 1_2:-8679584 Msa0054100:five_prime_UTR
AGAGTGTGACGCGGTGGTGG+CGG 0.429623 1_2:-8679217 Msa0054100:five_prime_UTR
AACTTCATACATAGTTCAAC+AGG 0.431616 1_2:-8680142 Msa0054100:five_prime_UTR
AGTGAGAGTAATTGAGATCA+GGG 0.433298 1_2:-8679493 Msa0054100:five_prime_UTR
TCCGTCATCACGTTTCCGTC+TGG 0.440194 1_2:-8679859 Msa0054100:five_prime_UTR
CGTTCGTGGCGGCGAGCTAG+TGG 0.441707 1_2:-8679335 Msa0054100:five_prime_UTR
GTTGTTGTGGTGGTGGAAGG+TGG 0.443643 1_2:-8679369 Msa0054100:five_prime_UTR
ATCGGAACCGCCACCGTCAT+CGG 0.447848 1_2:-8679925 Msa0054100:five_prime_UTR
CCGGAGCTTGTTCACAGACT+TGG 0.464846 1_2:-8679241 Msa0054100:five_prime_UTR
TTAGGTATCTTCGCCGTCGA+TGG 0.464857 1_2:+8679822 Msa0054110:intron
TGGTGGTGGAAGGTGGTGAG+AGG 0.469506 1_2:-8679362 Msa0054100:five_prime_UTR
TCTCTTTCCACCGCCGTCAT+CGG 0.470887 1_2:-8679943 Msa0054100:five_prime_UTR
GTTGGCTGTTGTTGTGGTGG+TGG 0.471357 1_2:-8679376 Msa0054100:five_prime_UTR
AGCAGCTTCTGCTTCTTCGT+TGG 0.474181 1_2:-8679435 Msa0054100:five_prime_UTR
GCTTTGCAGGTGACGTGAGC+CGG 0.474575 1_2:-8679260 Msa0054100:five_prime_UTR
GGCGGTTCCGATGACGGCGG+TGG 0.476197 1_2:+8679936 Msa0054110:CDS
CTTCGATTAGAAAGAAAGAA+AGG 0.480134 1_2:+8680167 Msa0054110:three_prime_UTR
GACGGTGGCGGTTCCGATGA+CGG 0.482863 1_2:+8679930 Msa0054110:CDS
GACGATTTCGTCACTGTCAA+CGG 0.491915 1_2:+8679533 Msa0054110:CDS
TTAATTGCAGAGGATGAATA+CGG 0.494889 1_2:+8680108 Msa0054110:CDS
GTTGTTGGCTGTTGTTGTGG+TGG 0.504240 1_2:-8679379 Msa0054100:five_prime_UTR
TGAAGGAGTTTGGAGAAGCC+AGG 0.505414 1_2:-8679459 Msa0054100:five_prime_UTR
GGCAGAGTGTGACGCGGTGG+TGG 0.506125 1_2:-8679220 Msa0054100:five_prime_UTR
GTAGTGTTCGTGTTCGTGTT+CGG 0.509358 1_2:-8679639 Msa0054100:five_prime_UTR
TGGTGAGAGGGACACGTTCG+TGG 0.516914 1_2:-8679349 Msa0054100:five_prime_UTR
GGTATCTTCGCCGTCGATGG+AGG 0.526645 1_2:+8679825 Msa0054110:intron
TGAGAGTGTTGTGAGTGTGT+TGG 0.533685 1_2:-8679029 Msa0054100:five_prime_UTR
CCAAGTCTGTGAACAAGCTC+CGG 0.534270 1_2:+8679241 Msa0054110:CDS
AAATATGAATTTAATTGCAG+AGG 0.534945 1_2:+8680098 Msa0054110:CDS
TTCGTGTTCGTGTTCGGTGG+TGG 0.536195 1_2:-8679633 Msa0054100:five_prime_UTR
AGTCCCGGCACCACCGCAGA+TGG 0.542153 1_2:+8679581 Msa0054110:CDS
CGGCGGTGGAAAGAGAAGCT+AGG 0.543681 1_2:+8679950 Msa0054110:CDS
GTTCGTGGCGGCGAGCTAGT+GGG 0.545982 1_2:-8679334 Msa0054100:five_prime_UTR
GGTGGTGGAAGGTGGTGAGA+GGG 0.548296 1_2:-8679361 Msa0054100:five_prime_UTR
AGGCGAGTTTGTTGGCAGCA+TGG 0.549459 1_2:-8679193 Msa0054100:five_prime_UTR
AGAGTGGATGTCATGATCAC+AGG 0.550527 1_2:-8679306 Msa0054100:five_prime_UTR
TCTTCGCCGTCGATGGAGGT+TGG 0.551535 1_2:+8679829 Msa0054110:CDS
ACGCCGGAGCAAAACAGTCC+CGG 0.553478 1_2:+8679566 Msa0054110:CDS
CGGAACGACGCCATCTGCGG+TGG 0.553872 1_2:-8679591 Msa0054100:five_prime_UTR
GGCGGTGGAAAGAGAAGCTA+GGG 0.558883 1_2:+8679951 Msa0054110:CDS
ATTGTTGTTGGCTGTTGTTG+TGG 0.558963 1_2:-8679382 Msa0054100:five_prime_UTR
GACGGCGCCGATGACGGTGG+CGG 0.560155 1_2:+8679918 Msa0054110:CDS
ACCAGACGGAAACGTGATGA+CGG 0.572547 1_2:+8679858 Msa0054110:CDS
TGATTGAAATTGTAAGTGAA+AGG 0.578430 1_2:-8679695 Msa0054100:five_prime_UTR
TGTGACGCGGTGGTGGCGGG+AGG 0.581988 1_2:-8679213 Msa0054100:five_prime_UTR
TTTGTTGGCAGCATGGATGT+TGG 0.587996 1_2:-8679186 Msa0054100:five_prime_UTR
CACCGGAACGACGCCATCTG+CGG 0.589463 1_2:-8679594 Msa0054100:five_prime_UTR
GACAGAGACGGCGCCGATGA+CGG 0.593724 1_2:+8679912 Msa0054110:CDS
CCAAACGACGGCGACAGAGA+CGG 0.604022 1_2:+8679900 Msa0054110:CDS
TGGAATCACATGTGAGACAA+AGG 0.606070 1_2:-8679166 Msa0054100:five_prime_UTR
GATACATAGAGCAGCTGCGT+CGG 0.618915 1_2:-8679282 Msa0054100:five_prime_UTR
TAATCCAAACTCCAAACCAA+AGG 0.621247 1_2:-8680479 None:intergenic
CTCGACCTAGAATTAAAGGA+AGG 0.631588 1_2:+8680055 Msa0054110:CDS
AAAGGAAAGCTGAATCAGAA+CGG 0.631900 1_2:-8679148 Msa0054100:five_prime_UTR
ACAACTCCAACCTCCATCGA+CGG 0.637687 1_2:-8679835 Msa0054100:five_prime_UTR
GTGTTCGTGTTCGTGTTCGG+TGG 0.637730 1_2:-8679636 Msa0054100:five_prime_UTR
GAGCTAGTGGGTTAGCAGAG+TGG 0.641063 1_2:-8679322 Msa0054100:five_prime_UTR
TCATACATAGTTCAACAGGA+AGG 0.676360 1_2:-8680138 Msa0054100:five_prime_UTR
AGAGACGGCGCCGATGACGG+TGG 0.685333 1_2:+8679915 Msa0054110:CDS
GAGGTTGGAGTTGTACCAGA+CGG 0.695762 1_2:+8679844 Msa0054110:CDS
TGAGAGGGACACGTTCGTGG+CGG 0.705181 1_2:-8679346 Msa0054100:five_prime_UTR
CAACGGTAAAACAGACACGC+CGG 0.705434 1_2:+8679550 Msa0054110:CDS
CTTGGCAGAGTGTGACGCGG+TGG 0.706255 1_2:-8679223 Msa0054100:five_prime_UTR
AGACTTGGCAGAGTGTGACG+CGG 0.706454 1_2:-8679226 Msa0054100:five_prime_UTR
TGACGAAATCGTCAATTTCG+GGG 0.717237 1_2:-8679523 Msa0054100:five_prime_UTR
GTACTGCGGTTACCAAACGA+CGG 0.762753 1_2:+8679888 Msa0054110:CDS
GGTGGCGGTTCCGATGACGG+CGG 0.772550 1_2:+8679933 Msa0054110:CDS
ATGACGGAGATATCGTACTG+CGG 0.812252 1_2:+8679874 Msa0054110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTAATTTTTTTGAATTT+TGG - chr1_2:8679740-8679759 Msa0054100:five_prime_UTR 15.0%
!! GTATATGTTAATGATATATT+AGG + chr1_2:8680343-8680362 Msa0054110:three_prime_UTR 15.0%
!! AGGAATTTATACATATAATA+AGG - chr1_2:8680462-8680481 Msa0054100:five_prime_UTR 15.0%
!! ATTATATGTATAAATTCCTT+TGG + chr1_2:8680463-8680482 Msa0054110:three_prime_UTR 15.0%
!!! ATCGTAATTTTTTTGAATTT+TGG - chr1_2:8679740-8679759 Msa0054100:five_prime_UTR 15.0%
!! GTATATGTTAATGATATATT+AGG + chr1_2:8680343-8680362 Msa0054110:three_prime_UTR 15.0%
!! AGGAATTTATACATATAATA+AGG - chr1_2:8680462-8680481 Msa0054100:five_prime_UTR 15.0%
!! ATTATATGTATAAATTCCTT+TGG + chr1_2:8680463-8680482 Msa0054110:three_prime_UTR 15.0%
!! CAATTCAATAAACAACAAAA+TGG + chr1_2:8679076-8679095 Msa0054110:exon 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1_2:8679804-8679823 Msa0054110:intron 20.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1_2:8680098-8680117 Msa0054110:CDS 20.0%
!! CAATTCAATAAACAACAAAA+TGG + chr1_2:8679076-8679095 Msa0054110:exon 20.0%
!!! ATTTCTTTTTTGTGTTGTTT+AGG + chr1_2:8679804-8679823 Msa0054110:intron 20.0%
!! AAATATGAATTTAATTGCAG+AGG + chr1_2:8680098-8680117 Msa0054110:CDS 20.0%
!!! TGAAGTTTTGTAATTGGATT+GGG - chr1_2:8679009-8679028 Msa0054100:five_prime_UTR 25.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1_2:8679698-8679717 Msa0054100:five_prime_UTR 25.0%
! ACTTGAAAAACATTCAAACA+CGG - chr1_2:8680194-8680213 Msa0054100:five_prime_UTR 25.0%
! ATGTATAAATTCCTTTGGTT+TGG + chr1_2:8680468-8680487 Msa0054110:three_prime_UTR 25.0%
!!! TGAAGTTTTGTAATTGGATT+GGG - chr1_2:8679009-8679028 Msa0054100:five_prime_UTR 25.0%
! TGATTGAAATTGTAAGTGAA+AGG - chr1_2:8679698-8679717 Msa0054100:five_prime_UTR 25.0%
! ACTTGAAAAACATTCAAACA+CGG - chr1_2:8680194-8680213 Msa0054100:five_prime_UTR 25.0%
!! GTGAAGTTTTGTAATTGGAT+TGG - chr1_2:8679010-8679029 Msa0054100:five_prime_UTR 30.0%
!! TGTTGGTGAAGTTTTGTAAT+TGG - chr1_2:8679015-8679034 Msa0054100:five_prime_UTR 30.0%
AATTGAGATCAGGGAATTTA+GGG - chr1_2:8679487-8679506 Msa0054100:five_prime_UTR 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1_2:8679488-8679507 Msa0054100:five_prime_UTR 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1_2:8679723-8679742 Msa0054100:five_prime_UTR 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1_2:8679778-8679797 Msa0054100:five_prime_UTR 30.0%
GAGAGAAAAGAAAGAATAGA+AGG + chr1_2:8679986-8680005 Msa0054110:CDS 30.0%
TTAATTGCAGAGGATGAATA+CGG + chr1_2:8680108-8680127 Msa0054110:CDS 30.0%
AACTTCATACATAGTTCAAC+AGG - chr1_2:8680145-8680164 Msa0054100:five_prime_UTR 30.0%
CTTCGATTAGAAAGAAAGAA+AGG + chr1_2:8680167-8680186 Msa0054110:three_prime_UTR 30.0%
!! GTGAAGTTTTGTAATTGGAT+TGG - chr1_2:8679010-8679029 Msa0054100:five_prime_UTR 30.0%
!! TGTTGGTGAAGTTTTGTAAT+TGG - chr1_2:8679015-8679034 Msa0054100:five_prime_UTR 30.0%
AATTGAGATCAGGGAATTTA+GGG - chr1_2:8679487-8679506 Msa0054100:five_prime_UTR 30.0%
TAATTGAGATCAGGGAATTT+AGG - chr1_2:8679488-8679507 Msa0054100:five_prime_UTR 30.0%
! TTTTGGATTTCTCGTTCTTA+CGG - chr1_2:8679723-8679742 Msa0054100:five_prime_UTR 30.0%
ATTCAGAGTTCAAATTGAAG+AGG - chr1_2:8679778-8679797 Msa0054100:five_prime_UTR 30.0%
GAGAGAAAAGAAAGAATAGA+AGG + chr1_2:8679986-8680005 Msa0054110:CDS 30.0%
TTAATTGCAGAGGATGAATA+CGG + chr1_2:8680108-8680127 Msa0054110:CDS 30.0%
AACTTCATACATAGTTCAAC+AGG - chr1_2:8680145-8680164 Msa0054100:five_prime_UTR 30.0%
CTTCGATTAGAAAGAAAGAA+AGG + chr1_2:8680167-8680186 Msa0054110:three_prime_UTR 30.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1_2:8679151-8679170 Msa0054100:five_prime_UTR 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1_2:8679397-8679416 Msa0054100:five_prime_UTR 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1_2:8679472-8679491 Msa0054100:five_prime_UTR 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1_2:8679496-8679515 Msa0054100:five_prime_UTR 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1_2:8679497-8679516 Msa0054100:five_prime_UTR 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1_2:8679528-8679547 Msa0054100:five_prime_UTR 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1_2:8679687-8679706 Msa0054100:five_prime_UTR 35.0%
! AAAGAGAAGCTAGGGTTTTA+AGG + chr1_2:8679959-8679978 Msa0054110:CDS 35.0%
GAAACTCGACCTAGAATTAA+AGG + chr1_2:8680051-8680070 Msa0054110:CDS 35.0%
TCATACATAGTTCAACAGGA+AGG - chr1_2:8680141-8680160 Msa0054100:five_prime_UTR 35.0%
AAAGGAAAGCTGAATCAGAA+CGG - chr1_2:8679151-8679170 Msa0054100:five_prime_UTR 35.0%
CAGAGAAGAATGATTGTTGT+TGG - chr1_2:8679397-8679416 Msa0054100:five_prime_UTR 35.0%
! ATTTAGGGTTTGAAGGAGTT+TGG - chr1_2:8679472-8679491 Msa0054100:five_prime_UTR 35.0%
AGTGAGAGTAATTGAGATCA+GGG - chr1_2:8679496-8679515 Msa0054100:five_prime_UTR 35.0%
TAGTGAGAGTAATTGAGATC+AGG - chr1_2:8679497-8679516 Msa0054100:five_prime_UTR 35.0%
AGTGACGAAATCGTCAATTT+CGG - chr1_2:8679528-8679547 Msa0054100:five_prime_UTR 35.0%
!!! GTAAGTGAAAGGTTTTGAGT+TGG - chr1_2:8679687-8679706 Msa0054100:five_prime_UTR 35.0%
! AAAGAGAAGCTAGGGTTTTA+AGG + chr1_2:8679959-8679978 Msa0054110:CDS 35.0%
GAAACTCGACCTAGAATTAA+AGG + chr1_2:8680051-8680070 Msa0054110:CDS 35.0%
TCATACATAGTTCAACAGGA+AGG - chr1_2:8680141-8680160 Msa0054100:five_prime_UTR 35.0%
TGGAATCACATGTGAGACAA+AGG - chr1_2:8679169-8679188 Msa0054100:five_prime_UTR 40.0%
! ATTGTTGTTGGCTGTTGTTG+TGG - chr1_2:8679385-8679404 Msa0054100:five_prime_UTR 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1_2:8679479-8679498 Msa0054100:five_prime_UTR 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1_2:8679526-8679545 Msa0054100:five_prime_UTR 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1_2:8679527-8679546 Msa0054100:five_prime_UTR 40.0%
CTCGACCTAGAATTAAAGGA+AGG + chr1_2:8680055-8680074 Msa0054110:CDS 40.0%
GCGAACCTTCCTTTAATTCT+AGG - chr1_2:8680063-8680082 Msa0054100:five_prime_UTR 40.0%
TGGAATCACATGTGAGACAA+AGG - chr1_2:8679169-8679188 Msa0054100:five_prime_UTR 40.0%
! ATTGTTGTTGGCTGTTGTTG+TGG - chr1_2:8679385-8679404 Msa0054100:five_prime_UTR 40.0%
! TCAGGGAATTTAGGGTTTGA+AGG - chr1_2:8679479-8679498 Msa0054100:five_prime_UTR 40.0%
TGACGAAATCGTCAATTTCG+GGG - chr1_2:8679526-8679545 Msa0054100:five_prime_UTR 40.0%
GTGACGAAATCGTCAATTTC+GGG - chr1_2:8679527-8679546 Msa0054100:five_prime_UTR 40.0%
CTCGACCTAGAATTAAAGGA+AGG + chr1_2:8680055-8680074 Msa0054110:CDS 40.0%
GCGAACCTTCCTTTAATTCT+AGG - chr1_2:8680063-8680082 Msa0054100:five_prime_UTR 40.0%
!! TGAGAGTGTTGTGAGTGTGT+TGG - chr1_2:8679032-8679051 Msa0054100:five_prime_UTR 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1_2:8679120-8679139 Msa0054100:five_prime_UTR 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1_2:8679132-8679151 Msa0054100:five_prime_UTR 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1_2:8679189-8679208 Msa0054100:five_prime_UTR 45.0%
AGAGTGGATGTCATGATCAC+AGG - chr1_2:8679309-8679328 Msa0054100:five_prime_UTR 45.0%
GACGATTTCGTCACTGTCAA+CGG + chr1_2:8679533-8679552 Msa0054110:CDS 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - chr1_2:8679642-8679661 Msa0054100:five_prime_UTR 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1_2:8679874-8679893 Msa0054110:CDS 45.0%
!! TGAGAGTGTTGTGAGTGTGT+TGG - chr1_2:8679032-8679051 Msa0054100:five_prime_UTR 45.0%
!! TGTTGCTTTGGATGACTTGC+AGG - chr1_2:8679120-8679139 Msa0054100:five_prime_UTR 45.0%
!! ACGGCAGAATAGTGTTGCTT+TGG - chr1_2:8679132-8679151 Msa0054100:five_prime_UTR 45.0%
TTTGTTGGCAGCATGGATGT+TGG - chr1_2:8679189-8679208 Msa0054100:five_prime_UTR 45.0%
AGAGTGGATGTCATGATCAC+AGG - chr1_2:8679309-8679328 Msa0054100:five_prime_UTR 45.0%
GACGATTTCGTCACTGTCAA+CGG + chr1_2:8679533-8679552 Msa0054110:CDS 45.0%
GTAGTGTTCGTGTTCGTGTT+CGG - chr1_2:8679642-8679661 Msa0054100:five_prime_UTR 45.0%
! ATGACGGAGATATCGTACTG+CGG + chr1_2:8679874-8679893 Msa0054110:CDS 45.0%
CCAAGTCTGTGAACAAGCTC+CGG + chr1_2:8679241-8679260 Msa0054110:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1_2:8679285-8679304 Msa0054100:five_prime_UTR 50.0%
! GTTGTTGGCTGTTGTTGTGG+TGG - chr1_2:8679382-8679401 Msa0054100:five_prime_UTR 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - chr1_2:8679435-8679454 Msa0054100:five_prime_UTR 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - chr1_2:8679438-8679457 Msa0054100:five_prime_UTR 50.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1_2:8679441-8679460 Msa0054110:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1_2:8679462-8679481 Msa0054100:five_prime_UTR 50.0%
CAACGGTAAAACAGACACGC+CGG + chr1_2:8679550-8679569 Msa0054110:CDS 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1_2:8679614-8679633 Msa0054100:five_prime_UTR 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1_2:8679822-8679841 Msa0054110:intron 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1_2:8679838-8679857 Msa0054100:five_prime_UTR 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1_2:8679844-8679863 Msa0054110:CDS 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1_2:8679858-8679877 Msa0054110:CDS 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1_2:8679888-8679907 Msa0054110:CDS 50.0%
CCAAGTCTGTGAACAAGCTC+CGG + chr1_2:8679241-8679260 Msa0054110:CDS 50.0%
GATACATAGAGCAGCTGCGT+CGG - chr1_2:8679285-8679304 Msa0054100:five_prime_UTR 50.0%
! GTTGTTGGCTGTTGTTGTGG+TGG - chr1_2:8679382-8679401 Msa0054100:five_prime_UTR 50.0%
AGCTTCTGCTTCTTCGTTGG+TGG - chr1_2:8679435-8679454 Msa0054100:five_prime_UTR 50.0%
AGCAGCTTCTGCTTCTTCGT+TGG - chr1_2:8679438-8679457 Msa0054100:five_prime_UTR 50.0%
AAGAAGCAGAAGCTGCTTCC+TGG + chr1_2:8679441-8679460 Msa0054110:CDS 50.0%
TGAAGGAGTTTGGAGAAGCC+AGG - chr1_2:8679462-8679481 Msa0054100:five_prime_UTR 50.0%
CAACGGTAAAACAGACACGC+CGG + chr1_2:8679550-8679569 Msa0054110:CDS 50.0%
!!! GTTTTGCTCTGAGACTGCAC+CGG - chr1_2:8679614-8679633 Msa0054100:five_prime_UTR 50.0%
TTAGGTATCTTCGCCGTCGA+TGG + chr1_2:8679822-8679841 Msa0054110:intron 50.0%
ACAACTCCAACCTCCATCGA+CGG - chr1_2:8679838-8679857 Msa0054100:five_prime_UTR 50.0%
GAGGTTGGAGTTGTACCAGA+CGG + chr1_2:8679844-8679863 Msa0054110:CDS 50.0%
ACCAGACGGAAACGTGATGA+CGG + chr1_2:8679858-8679877 Msa0054110:CDS 50.0%
GTACTGCGGTTACCAAACGA+CGG + chr1_2:8679888-8679907 Msa0054110:CDS 50.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1_2:8679196-8679215 Msa0054100:five_prime_UTR 55.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1_2:8679229-8679248 Msa0054100:five_prime_UTR 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - chr1_2:8679244-8679263 Msa0054100:five_prime_UTR 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1_2:8679325-8679344 Msa0054100:five_prime_UTR 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1_2:8679372-8679391 Msa0054100:five_prime_UTR 55.0%
!! GCTGTTGTTGTGGTGGTGGA+AGG - chr1_2:8679375-8679394 Msa0054100:five_prime_UTR 55.0%
GTTGGCTGTTGTTGTGGTGG+TGG - chr1_2:8679379-8679398 Msa0054100:five_prime_UTR 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1_2:8679636-8679655 Msa0054100:five_prime_UTR 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1_2:8679639-8679658 Msa0054100:five_prime_UTR 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1_2:8679862-8679881 Msa0054100:five_prime_UTR 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1_2:8679946-8679965 Msa0054100:five_prime_UTR 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1_2:8679951-8679970 Msa0054110:CDS 55.0%
!! AGGCGAGTTTGTTGGCAGCA+TGG - chr1_2:8679196-8679215 Msa0054100:five_prime_UTR 55.0%
AGACTTGGCAGAGTGTGACG+CGG - chr1_2:8679229-8679248 Msa0054100:five_prime_UTR 55.0%
! CCGGAGCTTGTTCACAGACT+TGG - chr1_2:8679244-8679263 Msa0054100:five_prime_UTR 55.0%
!! GAGCTAGTGGGTTAGCAGAG+TGG - chr1_2:8679325-8679344 Msa0054100:five_prime_UTR 55.0%
!! GTTGTTGTGGTGGTGGAAGG+TGG - chr1_2:8679372-8679391 Msa0054100:five_prime_UTR 55.0%
!! GCTGTTGTTGTGGTGGTGGA+AGG - chr1_2:8679375-8679394 Msa0054100:five_prime_UTR 55.0%
GTTGGCTGTTGTTGTGGTGG+TGG - chr1_2:8679379-8679398 Msa0054100:five_prime_UTR 55.0%
! TTCGTGTTCGTGTTCGGTGG+TGG - chr1_2:8679636-8679655 Msa0054100:five_prime_UTR 55.0%
GTGTTCGTGTTCGTGTTCGG+TGG - chr1_2:8679639-8679658 Msa0054100:five_prime_UTR 55.0%
TCCGTCATCACGTTTCCGTC+TGG - chr1_2:8679862-8679881 Msa0054100:five_prime_UTR 55.0%
TCTCTTTCCACCGCCGTCAT+CGG - chr1_2:8679946-8679965 Msa0054100:five_prime_UTR 55.0%
GGCGGTGGAAAGAGAAGCTA+GGG + chr1_2:8679951-8679970 Msa0054110:CDS 55.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1_2:8679263-8679282 Msa0054100:five_prime_UTR 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1_2:8679349-8679368 Msa0054100:five_prime_UTR 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1_2:8679352-8679371 Msa0054100:five_prime_UTR 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1_2:8679364-8679383 Msa0054100:five_prime_UTR 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1_2:8679365-8679384 Msa0054100:five_prime_UTR 60.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1_2:8679566-8679585 Msa0054110:CDS 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1_2:8679572-8679591 Msa0054100:five_prime_UTR 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1_2:8679825-8679844 Msa0054110:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1_2:8679829-8679848 Msa0054110:CDS 60.0%
CCAAACGACGGCGACAGAGA+CGG + chr1_2:8679900-8679919 Msa0054110:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1_2:8679928-8679947 Msa0054100:five_prime_UTR 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1_2:8679950-8679969 Msa0054110:CDS 60.0%
GCTTTGCAGGTGACGTGAGC+CGG - chr1_2:8679263-8679282 Msa0054100:five_prime_UTR 60.0%
TGAGAGGGACACGTTCGTGG+CGG - chr1_2:8679349-8679368 Msa0054100:five_prime_UTR 60.0%
TGGTGAGAGGGACACGTTCG+TGG - chr1_2:8679352-8679371 Msa0054100:five_prime_UTR 60.0%
!! GGTGGTGGAAGGTGGTGAGA+GGG - chr1_2:8679364-8679383 Msa0054100:five_prime_UTR 60.0%
!! TGGTGGTGGAAGGTGGTGAG+AGG - chr1_2:8679365-8679384 Msa0054100:five_prime_UTR 60.0%
ACGCCGGAGCAAAACAGTCC+CGG + chr1_2:8679566-8679585 Msa0054110:CDS 60.0%
! GTGCCGGGACTGTTTTGCTC+CGG - chr1_2:8679572-8679591 Msa0054100:five_prime_UTR 60.0%
GGTATCTTCGCCGTCGATGG+AGG + chr1_2:8679825-8679844 Msa0054110:intron 60.0%
TCTTCGCCGTCGATGGAGGT+TGG + chr1_2:8679829-8679848 Msa0054110:CDS 60.0%
CCAAACGACGGCGACAGAGA+CGG + chr1_2:8679900-8679919 Msa0054110:CDS 60.0%
ATCGGAACCGCCACCGTCAT+CGG - chr1_2:8679928-8679947 Msa0054100:five_prime_UTR 60.0%
CGGCGGTGGAAAGAGAAGCT+AGG + chr1_2:8679950-8679969 Msa0054110:CDS 60.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1_2:8679204-8679223 Msa0054100:five_prime_UTR 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1_2:8679220-8679239 Msa0054100:five_prime_UTR 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1_2:8679226-8679245 Msa0054100:five_prime_UTR 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1_2:8679276-8679295 Msa0054100:five_prime_UTR 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1_2:8679337-8679356 Msa0054100:five_prime_UTR 65.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1_2:8679592-8679611 Msa0054110:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1_2:8679597-8679616 Msa0054100:five_prime_UTR 65.0%
CCGTCTCTGTCGCCGTCGTT+TGG - chr1_2:8679903-8679922 Msa0054100:five_prime_UTR 65.0%
!! GACAGAGACGGCGCCGATGA+CGG + chr1_2:8679912-8679931 Msa0054110:CDS 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1_2:8679930-8679949 Msa0054110:CDS 65.0%
! GTGGCGGGAGGCGAGTTTGT+TGG - chr1_2:8679204-8679223 Msa0054100:five_prime_UTR 65.0%
! AGAGTGTGACGCGGTGGTGG+CGG - chr1_2:8679220-8679239 Msa0054100:five_prime_UTR 65.0%
CTTGGCAGAGTGTGACGCGG+TGG - chr1_2:8679226-8679245 Msa0054100:five_prime_UTR 65.0%
!! AGCAGCTGCGTCGGCTTTGC+AGG - chr1_2:8679276-8679295 Msa0054100:five_prime_UTR 65.0%
GTTCGTGGCGGCGAGCTAGT+GGG - chr1_2:8679337-8679356 Msa0054100:five_prime_UTR 65.0%
CACCGCAGATGGCGTCGTTC+CGG + chr1_2:8679592-8679611 Msa0054110:CDS 65.0%
CACCGGAACGACGCCATCTG+CGG - chr1_2:8679597-8679616 Msa0054100:five_prime_UTR 65.0%
CCGTCTCTGTCGCCGTCGTT+TGG - chr1_2:8679903-8679922 Msa0054100:five_prime_UTR 65.0%
!! GACAGAGACGGCGCCGATGA+CGG + chr1_2:8679912-8679931 Msa0054110:CDS 65.0%
! GACGGTGGCGGTTCCGATGA+CGG + chr1_2:8679930-8679949 Msa0054110:CDS 65.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1_2:8679219-8679238 Msa0054100:five_prime_UTR 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1_2:8679223-8679242 Msa0054100:five_prime_UTR 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1_2:8679338-8679357 Msa0054100:five_prime_UTR 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1_2:8679581-8679600 Msa0054110:CDS 70.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1_2:8679587-8679606 Msa0054100:five_prime_UTR 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1_2:8679588-8679607 Msa0054100:five_prime_UTR 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1_2:8679594-8679613 Msa0054100:five_prime_UTR 70.0%
!! AGAGACGGCGCCGATGACGG+TGG + chr1_2:8679915-8679934 Msa0054110:CDS 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1_2:8679933-8679952 Msa0054110:CDS 70.0%
! GAGTGTGACGCGGTGGTGGC+GGG - chr1_2:8679219-8679238 Msa0054100:five_prime_UTR 70.0%
GGCAGAGTGTGACGCGGTGG+TGG - chr1_2:8679223-8679242 Msa0054100:five_prime_UTR 70.0%
CGTTCGTGGCGGCGAGCTAG+TGG - chr1_2:8679338-8679357 Msa0054100:five_prime_UTR 70.0%
AGTCCCGGCACCACCGCAGA+TGG + chr1_2:8679581-8679600 Msa0054110:CDS 70.0%
ACGCCATCTGCGGTGGTGCC+GGG - chr1_2:8679587-8679606 Msa0054100:five_prime_UTR 70.0%
GACGCCATCTGCGGTGGTGC+CGG - chr1_2:8679588-8679607 Msa0054100:five_prime_UTR 70.0%
CGGAACGACGCCATCTGCGG+TGG - chr1_2:8679594-8679613 Msa0054100:five_prime_UTR 70.0%
!! AGAGACGGCGCCGATGACGG+TGG + chr1_2:8679915-8679934 Msa0054110:CDS 70.0%
! GGTGGCGGTTCCGATGACGG+CGG + chr1_2:8679933-8679952 Msa0054110:CDS 70.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1_2:8679216-8679235 Msa0054100:five_prime_UTR 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1_2:8679918-8679937 Msa0054110:CDS 75.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1_2:8679936-8679955 Msa0054110:CDS 75.0%
!! TGTGACGCGGTGGTGGCGGG+AGG - chr1_2:8679216-8679235 Msa0054100:five_prime_UTR 75.0%
!! GACGGCGCCGATGACGGTGG+CGG + chr1_2:8679918-8679937 Msa0054110:CDS 75.0%
! GGCGGTTCCGATGACGGCGG+TGG + chr1_2:8679936-8679955 Msa0054110:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 8678998 8680490 8678998 ID=Msa0054110;Name=Msa0054110
chr1_2 mRNA 8678998 8680490 8678998 ID=Msa0054110-mRNA-1;Parent=Msa0054110;Name=Msa0054110-mRNA-1;_AED=0.14;_eAED=0.14;_QI=97|1|1|1|1|1|2|341|316
chr1_2 exon 8678998 8679721 8678998 ID=Msa0054110-mRNA-1:exon:3129;Parent=Msa0054110-mRNA-1
chr1_2 exon 8679826 8680490 8679826 ID=Msa0054110-mRNA-1:exon:3130;Parent=Msa0054110-mRNA-1
chr1_2 five_prime_UTR 8678998 8679094 8678998 ID=Msa0054110-mRNA-1:five_prime_utr;Parent=Msa0054110-mRNA-1
chr1_2 CDS 8679095 8679721 8679095 ID=Msa0054110-mRNA-1:cds;Parent=Msa0054110-mRNA-1
chr1_2 CDS 8679826 8680149 8679826 ID=Msa0054110-mRNA-1:cds;Parent=Msa0054110-mRNA-1
chr1_2 three_prime_UTR 8680150 8680490 8680150 ID=Msa0054110-mRNA-1:three_prime_utr;Parent=Msa0054110-mRNA-1
Gene Sequence

>Msa0054110

ATGGCTACTAAGCTATGTGATTCCTGCAAGTCATCCAAAGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTTTGTCTCACATGTGATTCCAACATCCATGCTGCCAACAAACTCGCCTCCCGCCACCACCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGCTCTATGTATCTCCTGTGATCATGACATCCACTCTGCTAACCCACTAGCTCGCCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAGCCAACAACAATCATTCTTCTCTGAAAATGATCACGATGCCACCAACGAAGAAGCAGAAGCTGCTTCCTGGCTTCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATTGACGATTTCGTCACTGTCAACGGTAAAACAGACACGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCTCAGAGCAAAACCACCACCGAACACGAACACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTTCAATCACACCGTATCTTCGCCGTCGATGGAGGTTGGAGTTGTACCAGACGGAAACGTGATGACGGAGATATCGTACTGCGGTTACCAAACGACGGCGACAGAGACGGCGCCGATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTAAGGTACAGAGAGAAAAGAAAGAATAGAAGGTTCGAGAAGACAATTCGTTACGCTTCGAGAAAAGCTTATGCAGAAACTCGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCAGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCCTGTTGA

Protein sequence

>Msa0054110

MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAALCISCDHDIHSANPLARRHERVPLTTFHHHNNSQQQSFFSENDHDATNEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVNGKTDTPEQNSPGTTADGVVPVQSQSKTTTEHEHEHYSDINIDFSNSKPFTYNFNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC*