AlfalfaGEDB | Msa1086380

M. sativa cultivar zhongmu-4 / Msa1086380

KEGG: K02111|K02132
GO: -
PFAM: PF00430.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086380	RDY14671.1	93.555	512	26	2	35	542	31	539	0.0	957

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086380	sp\|Q2PMS8\|ATPA_SOYBN	97.872	376	8	0	167	542	7	382	0.0	744

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086380	A0A371II07	93.555	512	26	2	35	542	31	539	0.0	957

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002690	Msa1086380	0.841594	4.321811e-58	-8.615850e-47
Msa0002700	Msa1086380	0.840815	6.928386e-58	-8.615850e-47
Msa0004180	Msa1086380	0.802342	5.871517e-49	-8.615850e-47
Msa0016830	Msa1086380	0.813204	2.881064e-51	-8.615850e-47
Msa0021570	Msa1086380	0.839989	1.139326e-57	-8.615850e-47
Msa0028410	Msa1086380	0.840483	8.460262e-58	-8.615850e-47
Msa0028450	Msa1086380	0.834942	2.238674e-56	-8.615850e-47
Msa0028940	Msa1086380	0.827312	1.676811e-54	-8.615850e-47
Msa0030710	Msa1086380	0.838286	3.147415e-57	-8.615850e-47
Msa0034590	Msa1086380	0.806990	6.288692e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086380	MtrunA17_Chr4g0015651	99.468	376	2	0	167	542	7	382	0.0	752
Msa1086380	MtrunA17_Chr4g0016741	99.468	376	2	0	167	542	7	382	0.0	752
Msa1086380	MtrunA17_CPg0492941	99.468	376	2	0	167	542	7	382	0.0	752
Msa1086380	MtrunA17_MTg0490471	65.274	383	124	1	168	541	9	391	1.56e-174	502
Msa1086380	MtrunA17_Chr2g0286451	91.803	183	15	0	239	421	7	189	9.91e-114	335
Msa1086380	MtrunA17_Chr2g0278821	91.975	162	13	0	381	542	2	163	2.61e-103	312
Msa1086380	MtrunA17_Chr4g0040631	96.581	117	4	0	167	283	7	123	9.78e-70	220
Msa1086380	MtrunA17_CPg0492961	70.552	163	39	4	10	166	8	167	9.52e-65	209
Msa1086380	MtrunA17_Chr4g0061471	89.333	75	8	0	260	334	1	75	4.69e-39	137
Msa1086380	MtrunA17_Chr1g0211291	30.363	303	191	5	247	531	84	384	3.98e-29	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1086380	ATCG00120.1	95.745	376	16	0	167	542	7	382	0.0	729
Msa1086380	ATMG01190.1	61.880	383	137	1	168	541	9	391	2.76e-167	484
Msa1086380	AT2G07698.1	55.224	469	195	3	88	541	193	661	9.82e-166	489
Msa1086380	ATCG00130.1	57.927	164	61	3	12	167	7	170	2.58e-51	174
Msa1086380	AT4G38510.5	30.464	302	191	5	247	531	90	389	7.31e-30	123
Msa1086380	AT4G38510.1	30.464	302	191	5	247	531	83	382	7.41e-30	123
Msa1086380	AT4G38510.3	30.464	302	191	5	247	531	83	382	7.41e-30	123
Msa1086380	AT4G38510.4	30.464	302	191	5	247	531	83	382	7.41e-30	123
Msa1086380	AT4G38510.2	30.464	302	191	5	247	531	83	382	7.41e-30	123
Msa1086380	AT1G76030.1	30.464	302	191	5	247	531	82	381	7.35e-29	120

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Find 139 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATGAAACAGGTAGC+TGG	0.558354	7_2:-87357732	Msa1086380:CDS
AAATATTTGGCCATCTGTAA+TGG	0.434228	7_2:+87357842	None:intergenic
AAATGTTGGTGTTGTATTAA+TGG	0.258988	7_2:-87358642	Msa1086380:CDS
AAATTTCAGCTTCGGAATCT+CGG	0.492871	7_2:-87358490	Msa1086380:CDS
AACTACTTTACAAGAAAGAG+GGG	0.635218	7_2:-87358222	Msa1086380:CDS
AAGCTGAAACATCTCCTGAT+TGG	0.409535	7_2:+87357886	None:intergenic
AAGGAAAGTAGAAACGGAAG+CGG	0.622485	7_2:-87359235	Msa1086380:CDS
AAGTAGAAACGGAAGCGGAT+CGG	0.570689	7_2:-87359230	Msa1086380:CDS
AATCAGACCAGCTATTAATG+TGG	0.625394	7_2:-87357793	Msa1086380:CDS
AATGGAGTACACTATTATAG+TGG	0.544433	7_2:-87358198	Msa1086380:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTATCTCTCAACACGTTT+AGG	+	chr7_2:87357771-87357790	None:intergenic	30.0%
GAATCGAAAAGATCTATCTA+GGG	+	chr7_2:87357798-87357817	None:intergenic	30.0%
TGAATCGAAAAGATCTATCT+AGG	+	chr7_2:87357799-87357818	None:intergenic	30.0%
GAATATGGAGAAACTTATCA+TGG	-	chr7_2:87358129-87358148	Msa1086380:CDS	30.0%
CCGAATGAAGAATAAATTGT+AGG	+	chr7_2:87358525-87358544	None:intergenic	30.0%
AACTAGTATCTACTTCTAAG+AGG	-	chr7_2:87358652-87358671	Msa1086380:CDS	30.0%
TCTTTCTTTGCTTCATTTAC+TGG	-	chr7_2:87358951-87358970	Msa1086380:intron	30.0%
ATAAATCTAAGTGTAGTGCT+AGG	-	chr7_2:87359023-87359042	Msa1086380:CDS	30.0%
CAATTTCCGTATTAACATAG+TGG	+	chr7_2:87359338-87359357	None:intergenic	30.0%
CACTATGTTAATACGGAAAT+TGG	-	chr7_2:87359336-87359355	Msa1086380:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	87357725	87361407	87357725	ID=Msa1086380;Name=Msa1086380
chr7_2	mRNA	87357725	87361407	87357725	ID=Msa1086380-mRNA-1;Parent=Msa1086380;Name=Msa1086380-mRNA-1;_AED=0.15;_eAED=0.16;_QI=0\|0\|0\|0.8\|0.25\|0.2\|5\|0\|542
chr7_2	exon	87361404	87361407	87361404	ID=Msa1086380-mRNA-1:exon:23757;Parent=Msa1086380-mRNA-1
chr7_2	exon	87360835	87360993	87360835	ID=Msa1086380-mRNA-1:exon:23756;Parent=Msa1086380-mRNA-1
chr7_2	exon	87359217	87359351	87359217	ID=Msa1086380-mRNA-1:exon:23755;Parent=Msa1086380-mRNA-1
chr7_2	exon	87359005	87359205	87359005	ID=Msa1086380-mRNA-1:exon:23754;Parent=Msa1086380-mRNA-1
chr7_2	exon	87357725	87358854	87357725	ID=Msa1086380-mRNA-1:exon:23753;Parent=Msa1086380-mRNA-1
chr7_2	CDS	87361404	87361407	87361404	ID=Msa1086380-mRNA-1:cds;Parent=Msa1086380-mRNA-1
chr7_2	CDS	87360835	87360993	87360835	ID=Msa1086380-mRNA-1:cds;Parent=Msa1086380-mRNA-1
chr7_2	CDS	87359217	87359351	87359217	ID=Msa1086380-mRNA-1:cds;Parent=Msa1086380-mRNA-1
chr7_2	CDS	87359005	87359205	87359005	ID=Msa1086380-mRNA-1:cds;Parent=Msa1086380-mRNA-1
chr7_2	CDS	87357725	87358854	87357725	ID=Msa1086380-mRNA-1:cds;Parent=Msa1086380-mRNA-1

Gene Sequence

>Msa1086380

ATGGAAACTTATCATGGATCCACTGATTTCTGCTGCTTCTGTTATCGCTGCGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGAGTTGGTCAAGGTACAAGCTGCAGGGCAAGCTGTAGAAGGGATTGCGCGACAACCGGAAGCAGAGGACAAAATAAGGGATAATCGAAAACAGAGAATCTTGAGAACTATTCAAAATTCAGAAGAACTACGGGAAGCAGCCGTTGAACAGCTGGAGAAAGCCCGGGCCCGCTTAAGGAAAGTAGAAACGGAAGCGGATCGGTTTCGAGTGAATGATAGAACGAGAAAAATTGAATTAATTAATTCAATTTATACAACTTTGGAACAATTCGAAAATTACAAAAATGAAACGATTCATTTTGAACAACAAAGGGCGATTAATCAAGTGCAACAGAGGGTTTTACAACAAGCATTACAAGGAGCTCTGGGAACTCTGAATAGTTGCTTAAACAACGAGTTACATTTACGTACGATCGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATAA

Protein sequence

>Msa1086380

METYHGSTDFCCFCYRCGWPSGLLLLDLELVKVQAAGQAVEGIARQPEAEDKIRDNRKQRILRTIQNSEELREAAVEQLEKARARLRKVETEADRFRVNDRTRKIELINSIYTTLEQFENYKNETIHFEQQRAINQVQQRVLQQALQGALGTLNSCLNNELHLRTIDEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGK*