AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086360 MtrunA17_CPg0492851 84.615 325 1 3 65 340 1 325 0.0 533
Msa1086360 MtrunA17_Chr4g0015731 84.615 325 1 3 65 340 1 325 0.0 533
Msa1086360 MtrunA17_Chr4g0016821 84.615 325 1 3 65 340 1 325 0.0 533
Msa1086360 MtrunA17_Chr4g0016981 76.596 94 3 2 108 197 42 120 5.86e-40 137
Msa1086360 MtrunA17_Chr4g0016991 95.385 65 3 0 276 340 1 65 1.37e-36 126
Msa1086360 MtrunA17_Chr5g0403621 96.667 60 2 0 1 60 86 145 2.44e-35 126
Msa1086360 MtrunA17_CPg0492871 98.333 60 1 0 1 60 86 145 1.23e-34 126
Msa1086360 MtrunA17_Chr4g0015721 98.333 60 1 0 1 60 86 145 1.23e-34 126
Msa1086360 MtrunA17_Chr4g0016811 98.333 60 1 0 1 60 95 154 1.35e-34 126
Msa1086360 MtrunA17_Chr3g0141111 94.737 57 3 0 1 57 15 71 1.32e-32 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086360 ATCG00540.1 77.812 320 22 3 70 340 1 320 8.50e-171 478
Msa1086360 ATCG00530.1 67.241 58 19 0 3 60 88 145 1.49e-18 83.6

Find 75 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGGCATCTATTATTT+TGG 0.108321 7_2:-87347345 Msa1086360:CDS
TTCTAAGTGGTTATTCTATT+AGG 0.170612 7_2:-87348760 Msa1086360:CDS
ACAAGGTCTGTTGTTCTTCT+TGG 0.210830 7_2:-87347360 Msa1086360:CDS
TCTAAGTGGTTATTCTATTA+GGG 0.213858 7_2:-87348759 Msa1086360:CDS
ACATTAGGATTACTCGTTAA+TGG 0.226644 7_2:+87347437 None:intergenic
TAGAATAACCACTTAGAATA+AGG 0.296044 7_2:+87348765 None:intergenic
CTACAGGCTTATTAGCTAAA+TGG 0.299374 7_2:+87348040 None:intergenic
CTATATACGTAGGCGGGAAT+AGG 0.308836 7_2:-87347672 Msa1086360:CDS
AATCCTAATGTGGGTGGATT+TGG 0.318985 7_2:-87347425 Msa1086360:CDS
AACTCATTATTCTTAACTCT+TGG 0.323937 7_2:-87348727 Msa1086360:CDS
TATATACGTAGGCGGGAATA+GGG 0.340058 7_2:-87347671 Msa1086360:CDS
CTATTCCCGCCTACGTATAT+AGG 0.341092 7_2:+87347673 None:intergenic
GTTAAACAAGTTCTTGCTAA+TGG 0.346567 7_2:-87347943 Msa1086360:CDS
GGTTGTTCGTCTCTATCAAT+TGG 0.367131 7_2:+87348837 None:intergenic
CCCTCTGAAACAAGAAGTTC+TGG 0.373836 7_2:+87347482 None:intergenic
TAATGTGGGTGGATTTGGTC+AGG 0.386047 7_2:-87347420 Msa1086360:CDS
TGACCAAATCCACCCACATT+AGG 0.412065 7_2:+87347422 None:intergenic
TGTTTAACTTGCATATCATA+AGG 0.412925 7_2:+87347958 None:intergenic
ACTCATTATTCTTAACTCTT+GGG 0.414290 7_2:-87348726 Msa1086360:CDS
AATGGGATATGCATTTGAAA+TGG 0.432612 7_2:+87348125 None:intergenic
GTTTATAATGCTACAGCAAC+AGG 0.436701 7_2:-87347604 Msa1086360:intron
GATCATGAGCAATACGGAAA+TGG 0.442149 7_2:+87348167 None:intergenic
AAATCGTATGGATACGGTCT+TGG 0.446811 7_2:+87348816 None:intergenic
TTATTACTCTTGCTCCCGTC+GGG 0.465288 7_2:+87347631 None:intergenic
ATATGTTTCCTTATTCTAAG+TGG 0.468100 7_2:-87348773 Msa1086360:CDS
TACAGAAATGCAAAATCGTA+TGG 0.481344 7_2:+87348804 None:intergenic
ACTGCTTCAAATACAGTATC+GGG 0.488265 7_2:+87347991 None:intergenic
AAAAGCATTTCTAGTTTGCA+TGG 0.489913 7_2:+87348218 None:intergenic
TGGATACGAAATAACGATAG+TGG 0.491690 7_2:-87347549 Msa1086360:CDS
AACTGCTTCAAATACAGTAT+CGG 0.494328 7_2:+87347990 None:intergenic
ATGGGATATGCATTTGAAAT+GGG 0.502392 7_2:+87348126 None:intergenic
GAGCAATACGGAAATGGATC+GGG 0.505456 7_2:+87348173 None:intergenic
CAAGATCCGTTACGTGTACA+AGG 0.506414 7_2:-87347377 Msa1086360:CDS
TATATAGATCATGAGCAATA+CGG 0.512581 7_2:+87348161 None:intergenic
ATCCGCCCGGTAGCTTCTCT+CGG 0.516777 7_2:+87348078 None:intergenic
AATATCCTATATACGTAGGC+GGG 0.517081 7_2:-87347678 Msa1086360:CDS
ATGTGGGTGGATTTGGTCAG+GGG 0.523100 7_2:-87347418 Msa1086360:CDS
ATTATTACTCTTGCTCCCGT+CGG 0.527873 7_2:+87347630 None:intergenic
CCAGAACTTCTTGTTTCAGA+GGG 0.530598 7_2:-87347482 Msa1086360:CDS
AATGTGGGTGGATTTGGTCA+GGG 0.534197 7_2:-87347419 Msa1086360:CDS
ATCTCGGGCGAAATACGATC+AGG 0.534200 7_2:+87347856 None:intergenic
CTAAGTGGTTATTCTATTAG+GGG 0.545375 7_2:-87348758 Msa1086360:CDS
GAAACAAGAAGTTCTGGTCC+TGG 0.545439 7_2:+87347488 None:intergenic
GTAGGCGGGAATAGGGGAAG+GGG 0.547797 7_2:-87347664 Msa1086360:CDS
AATGCAAAATCGTATGGATA+CGG 0.548969 7_2:+87348810 None:intergenic
GTGAACATCTCTCTTAGTAG+CGG 0.549431 7_2:+87347708 None:intergenic
ACCAGAACTTCTTGTTTCAG+AGG 0.553828 7_2:-87347483 Msa1086360:CDS
AAAATCCGAGAGAAGCTACC+GGG 0.554646 7_2:-87348083 Msa1086360:CDS
TGAGCAATACGGAAATGGAT+CGG 0.555873 7_2:+87348172 None:intergenic
GTGATTGATATTATACCGCC+AGG 0.566218 7_2:-87347506 Msa1086360:CDS
TGAACATCTCTCTTAGTAGC+GGG 0.566429 7_2:+87347709 None:intergenic
ATTAACGAGTAATCCTAATG+TGG 0.573726 7_2:-87347435 Msa1086360:CDS
GGGGCCAATTCAAAACCCTC+TGG 0.574508 7_2:+87347880 None:intergenic
GGGGTCAGATTTATCCCGAC+GGG 0.575656 7_2:-87347645 Msa1086360:CDS
ACGTAGGCGGGAATAGGGGA+AGG 0.589088 7_2:-87347666 Msa1086360:CDS
ACGATAGTGGATGCATCGGA+TGG 0.592008 7_2:-87347536 Msa1086360:CDS
AACAGACCTTGTACACGTAA+CGG 0.600684 7_2:+87347371 None:intergenic
GAAAATCCGAGAGAAGCTAC+CGG 0.606144 7_2:-87348084 Msa1086360:CDS
TGTGGGTGGATTTGGTCAGG+GGG 0.611690 7_2:-87347417 Msa1086360:CDS
AAATATCCTATATACGTAGG+CGG 0.616381 7_2:-87347679 Msa1086360:CDS
TTAAAATATCCTATATACGT+AGG 0.623794 7_2:-87347682 Msa1086360:CDS
ACGAGTAATCCTAATGTGGG+TGG 0.626177 7_2:-87347431 Msa1086360:CDS
TCGGGCGAAATACGATCAGG+AGG 0.629985 7_2:+87347859 None:intergenic
ATTAGCACATACAATCCGCC+CGG 0.633238 7_2:+87348065 None:intergenic
AATAACGATAGTGGATGCAT+CGG 0.634066 7_2:-87347540 Msa1086360:CDS
ATATACGTAGGCGGGAATAG+GGG 0.641009 7_2:-87347670 Msa1086360:CDS
CGTAGGCGGGAATAGGGGAA+GGG 0.650670 7_2:-87347665 Msa1086360:CDS
TTAACGAGTAATCCTAATGT+GGG 0.652400 7_2:-87347434 Msa1086360:CDS
AGATATTGAGGTTCCACAAG+CGG 0.653295 7_2:-87348019 Msa1086360:intron
CGGGCGAAATACGATCAGGA+GGG 0.656521 7_2:+87347860 None:intergenic
GGGCGAAATACGATCAGGAG+GGG 0.658846 7_2:+87347861 None:intergenic
AGGGGTCAGATTTATCCCGA+CGG 0.672516 7_2:-87347646 Msa1086360:CDS
GTATCGGGAAGTACCGCTTG+TGG 0.687149 7_2:+87348006 None:intergenic
ACAAGAAGTTCTGGTCCTGG+CGG 0.692543 7_2:+87347491 None:intergenic
ATCCGAGAGAAGCTACCGGG+CGG 0.767274 7_2:-87348080 Msa1086360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAAAAACAAATTTTATAAT+TGG + chr7_2:87347732-87347751 None:intergenic 10.0%
!!! CAAAAAACAAATTTTATAAT+TGG + chr7_2:87347732-87347751 None:intergenic 10.0%
!! TACATAAATCAGTTAATAAA+AGG + chr7_2:87347486-87347505 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr7_2:87347487-87347506 Msa1086360:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr7_2:87347623-87347642 Msa1086360:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr7_2:87347882-87347901 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + chr7_2:87348347-87348366 None:intergenic 15.0%
!! TAAAATATACGAAAAGAAAA+AGG - chr7_2:87348565-87348584 Msa1086360:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr7_2:87348834-87348853 Msa1086360:CDS 15.0%
!! TACATAAATCAGTTAATAAA+AGG + chr7_2:87347486-87347505 None:intergenic 15.0%
!!! TTATTAACTGATTTATGTAT+AGG - chr7_2:87347487-87347506 Msa1086360:CDS 15.0%
!!! TAGATACAATTTTAAAATAC+TGG - chr7_2:87347623-87347642 Msa1086360:CDS 15.0%
!! AAAATTTCTACAATAAGATT+AGG + chr7_2:87347882-87347901 None:intergenic 15.0%
!!! ACAAGAATATTTTTTTTTGT+GGG + chr7_2:87348347-87348366 None:intergenic 15.0%
!! TAAAATATACGAAAAGAAAA+AGG - chr7_2:87348565-87348584 Msa1086360:intron 15.0%
!! TAAAAAGAAACAATTTGAAA+AGG - chr7_2:87348834-87348853 Msa1086360:CDS 15.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr7_2:87347616-87347635 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr7_2:87347724-87347743 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr7_2:87347814-87347833 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr7_2:87347883-87347902 Msa1086360:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr7_2:87348300-87348319 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr7_2:87348348-87348367 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr7_2:87348346-87348365 Msa1086360:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr7_2:87348350-87348369 Msa1086360:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr7_2:87348455-87348474 Msa1086360:intron 20.0%
!!! AAAATTGTATCTAAAATGAC+TGG + chr7_2:87347616-87347635 None:intergenic 20.0%
!!! AAATTTTATAATTGGATCAG+TGG + chr7_2:87347724-87347743 None:intergenic 20.0%
!!! AAATGATTTTCCTAGAATAT+AGG + chr7_2:87347814-87347833 None:intergenic 20.0%
!!! ATCTTATTGTAGAAATTTTC+AGG - chr7_2:87347883-87347902 Msa1086360:CDS 20.0%
!!! ACCTATTTTTTCTTTAATCT+CGG + chr7_2:87348300-87348319 None:intergenic 20.0%
!!! CACAAGAATATTTTTTTTTG+TGG + chr7_2:87348348-87348367 None:intergenic 20.0%
!! CACAAAAAAAAATATTCTTG+TGG - chr7_2:87348346-87348365 Msa1086360:intron 20.0%
!! AAAAAAAATATTCTTGTGGT+AGG - chr7_2:87348350-87348369 Msa1086360:intron 20.0%
!! TTAAAATATCCTATATACGT+AGG - chr7_2:87348455-87348474 Msa1086360:intron 20.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr7_2:87347364-87347383 Msa1086360:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr7_2:87347375-87347394 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr7_2:87347377-87347396 Msa1086360:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr7_2:87347378-87347397 Msa1086360:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr7_2:87347410-87347429 Msa1086360:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr7_2:87347411-87347430 Msa1086360:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr7_2:87347574-87347593 Msa1086360:intron 25.0%
! GAGATACACGATTTAAATAA+CGG + chr7_2:87347654-87347673 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr7_2:87347832-87347851 Msa1086360:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr7_2:87347837-87347856 Msa1086360:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr7_2:87347838-87347857 Msa1086360:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr7_2:87347878-87347897 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr7_2:87347895-87347914 Msa1086360:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr7_2:87347925-87347944 Msa1086360:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr7_2:87347932-87347951 Msa1086360:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr7_2:87347979-87347998 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr7_2:87348182-87348201 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr7_2:87348204-87348223 Msa1086360:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr7_2:87348299-87348318 None:intergenic 25.0%
! AATATACGAAAAGAAAAAGG+TGG - chr7_2:87348568-87348587 Msa1086360:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr7_2:87348807-87348826 Msa1086360:CDS 25.0%
! ATATGTTTCCTTATTCTAAG+TGG - chr7_2:87347364-87347383 Msa1086360:CDS 25.0%
! TAGAATAACCACTTAGAATA+AGG + chr7_2:87347375-87347394 None:intergenic 25.0%
! TTCTAAGTGGTTATTCTATT+AGG - chr7_2:87347377-87347396 Msa1086360:CDS 25.0%
! TCTAAGTGGTTATTCTATTA+GGG - chr7_2:87347378-87347397 Msa1086360:CDS 25.0%
! AACTCATTATTCTTAACTCT+TGG - chr7_2:87347410-87347429 Msa1086360:CDS 25.0%
! ACTCATTATTCTTAACTCTT+GGG - chr7_2:87347411-87347430 Msa1086360:CDS 25.0%
! CAGAATGATCAAATTATATC+TGG - chr7_2:87347574-87347593 Msa1086360:intron 25.0%
! GAGATACACGATTTAAATAA+CGG + chr7_2:87347654-87347673 None:intergenic 25.0%
! TTGAGTAAATAGCAGAATAA+TGG - chr7_2:87347832-87347851 Msa1086360:intron 25.0%
!!! TAAATAGCAGAATAATGGAT+AGG - chr7_2:87347837-87347856 Msa1086360:intron 25.0%
!!! AAATAGCAGAATAATGGATA+GGG - chr7_2:87347838-87347857 Msa1086360:intron 25.0%
! TTTCTACAATAAGATTAGGT+AGG + chr7_2:87347878-87347897 None:intergenic 25.0%
!!! AAATTTTCAGGATGAATGAT+TGG - chr7_2:87347895-87347914 Msa1086360:CDS 25.0%
!!! AAACTAGAAATGCTTTTTCT+TGG - chr7_2:87347925-87347944 Msa1086360:CDS 25.0%
!!! AAATGCTTTTTCTTGGATAA+AGG - chr7_2:87347932-87347951 Msa1086360:CDS 25.0%
! TATATAGATCATGAGCAATA+CGG + chr7_2:87347979-87347998 None:intergenic 25.0%
!!! TGTTTAACTTGCATATCATA+AGG + chr7_2:87348182-87348201 None:intergenic 25.0%
! TTCTTGCTAATGGTAAAAAA+GGG - chr7_2:87348204-87348223 Msa1086360:CDS 25.0%
!!! CCTATTTTTTCTTTAATCTC+GGG + chr7_2:87348299-87348318 None:intergenic 25.0%
! AATATACGAAAAGAAAAAGG+TGG - chr7_2:87348568-87348587 Msa1086360:intron 25.0%
!!! TATTTTGGCACAAATCTTTT+TGG - chr7_2:87348807-87348826 Msa1086360:CDS 25.0%
AATGCAAAATCGTATGGATA+CGG + chr7_2:87347330-87347349 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr7_2:87347336-87347355 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr7_2:87347379-87347398 Msa1086360:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr7_2:87347608-87347627 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr7_2:87347676-87347695 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr7_2:87347801-87347820 Msa1086360:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr7_2:87347871-87347890 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr7_2:87347922-87347941 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr7_2:87348014-87348033 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr7_2:87348015-87348034 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr7_2:87348106-87348125 Msa1086360:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr7_2:87348150-87348169 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr7_2:87348194-87348213 Msa1086360:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr7_2:87348203-87348222 Msa1086360:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr7_2:87348205-87348224 Msa1086360:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr7_2:87348296-87348315 Msa1086360:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr7_2:87348383-87348402 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr7_2:87348458-87348477 Msa1086360:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr7_2:87348703-87348722 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr7_2:87348702-87348721 Msa1086360:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr7_2:87348703-87348722 Msa1086360:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr7_2:87348792-87348811 Msa1086360:CDS 30.0%
AATGCAAAATCGTATGGATA+CGG + chr7_2:87347330-87347349 None:intergenic 30.0%
TACAGAAATGCAAAATCGTA+TGG + chr7_2:87347336-87347355 None:intergenic 30.0%
CTAAGTGGTTATTCTATTAG+GGG - chr7_2:87347379-87347398 Msa1086360:CDS 30.0%
! ATCTAAAATGACTGGAAAAG+TGG + chr7_2:87347608-87347627 None:intergenic 30.0%
TGATAAATCACTACAAGTGA+CGG + chr7_2:87347676-87347695 None:intergenic 30.0%
TCGTATTCTTCCTATATTCT+AGG - chr7_2:87347801-87347820 Msa1086360:intron 30.0%
AATAAGATTAGGTAGGTTAC+TGG + chr7_2:87347871-87347890 None:intergenic 30.0%
!! AAAAGCATTTCTAGTTTGCA+TGG + chr7_2:87347922-87347941 None:intergenic 30.0%
! ATGGGATATGCATTTGAAAT+GGG + chr7_2:87348014-87348033 None:intergenic 30.0%
AATGGGATATGCATTTGAAA+TGG + chr7_2:87348015-87348034 None:intergenic 30.0%
TAATAAGCCTGTAGATATTG+AGG - chr7_2:87348106-87348125 Msa1086360:CDS 30.0%
AACTGCTTCAAATACAGTAT+CGG + chr7_2:87348150-87348169 None:intergenic 30.0%
GTTAAACAAGTTCTTGCTAA+TGG - chr7_2:87348194-87348213 Msa1086360:CDS 30.0%
GTTCTTGCTAATGGTAAAAA+AGG - chr7_2:87348203-87348222 Msa1086360:CDS 30.0%
TCTTGCTAATGGTAAAAAAG+GGG - chr7_2:87348205-87348224 Msa1086360:CDS 30.0%
CCCGAGATTAAAGAAAAAAT+AGG - chr7_2:87348296-87348315 Msa1086360:intron 30.0%
ATTTCACTATATTTCTTCCC+AGG + chr7_2:87348383-87348402 None:intergenic 30.0%
AAATATCCTATATACGTAGG+CGG - chr7_2:87348458-87348477 Msa1086360:intron 30.0%
ACATTAGGATTACTCGTTAA+TGG + chr7_2:87348703-87348722 None:intergenic 30.0%
ATTAACGAGTAATCCTAATG+TGG - chr7_2:87348702-87348721 Msa1086360:CDS 30.0%
TTAACGAGTAATCCTAATGT+GGG - chr7_2:87348703-87348722 Msa1086360:CDS 30.0%
! CTTCTTGGCATCTATTATTT+TGG - chr7_2:87348792-87348811 Msa1086360:CDS 30.0%
ATAGGATTCCATTCAACTCA+TGG - chr7_2:87347505-87347524 Msa1086360:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr7_2:87347510-87347529 Msa1086360:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr7_2:87347524-87347543 Msa1086360:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr7_2:87347544-87347563 Msa1086360:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr7_2:87348025-87348044 Msa1086360:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr7_2:87348026-87348045 Msa1086360:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr7_2:87348032-87348051 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr7_2:87348033-87348052 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr7_2:87348100-87348119 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr7_2:87348149-87348168 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr7_2:87348218-87348237 Msa1086360:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr7_2:87348241-87348260 Msa1086360:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr7_2:87348242-87348261 Msa1086360:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr7_2:87348253-87348272 Msa1086360:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr7_2:87348378-87348397 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr7_2:87348408-87348427 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr7_2:87348459-87348478 Msa1086360:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr7_2:87348533-87348552 Msa1086360:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr7_2:87348588-87348607 Msa1086360:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr7_2:87348597-87348616 Msa1086360:intron 35.0%
ATAGGATTCCATTCAACTCA+TGG - chr7_2:87347505-87347524 Msa1086360:CDS 35.0%
ATTCCATTCAACTCATGGTT+GGG - chr7_2:87347510-87347529 Msa1086360:CDS 35.0%
ATGGTTGGGAACTAATGATT+GGG - chr7_2:87347524-87347543 Msa1086360:CDS 35.0%
! GGGTCTGTCTATAAAGATTT+TGG - chr7_2:87347544-87347563 Msa1086360:CDS 35.0%
!! ATATCCCATTTTTGCTCAAC+AGG - chr7_2:87348025-87348044 Msa1086360:intron 35.0%
!! TATCCCATTTTTGCTCAACA+GGG - chr7_2:87348026-87348045 Msa1086360:intron 35.0%
TAACCCTGTTGAGCAAAAAT+GGG + chr7_2:87348032-87348051 None:intergenic 35.0%
ATAACCCTGTTGAGCAAAAA+TGG + chr7_2:87348033-87348052 None:intergenic 35.0%
CTACAGGCTTATTAGCTAAA+TGG + chr7_2:87348100-87348119 None:intergenic 35.0%
ACTGCTTCAAATACAGTATC+GGG + chr7_2:87348149-87348168 None:intergenic 35.0%
!! AAAAAAGGGGCTTTGAATGT+AGG - chr7_2:87348218-87348237 Msa1086360:CDS 35.0%
!!! TGCTGTTCTTATTTTACCAG+AGG - chr7_2:87348241-87348260 Msa1086360:CDS 35.0%
!!! GCTGTTCTTATTTTACCAGA+GGG - chr7_2:87348242-87348261 Msa1086360:CDS 35.0%
!!! TTTACCAGAGGGTTTTGAAT+TGG - chr7_2:87348253-87348272 Msa1086360:intron 35.0%
ACTATATTTCTTCCCAGGAA+CGG + chr7_2:87348378-87348397 None:intergenic 35.0%
ATCTGGAGAAAGAATAGGAA+AGG + chr7_2:87348408-87348427 None:intergenic 35.0%
AATATCCTATATACGTAGGC+GGG - chr7_2:87348459-87348478 Msa1086360:intron 35.0%
GTTTATAATGCTACAGCAAC+AGG - chr7_2:87348533-87348552 Msa1086360:intron 35.0%
TGGATACGAAATAACGATAG+TGG - chr7_2:87348588-87348607 Msa1086360:intron 35.0%
!! AATAACGATAGTGGATGCAT+CGG - chr7_2:87348597-87348616 Msa1086360:intron 35.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr7_2:87347303-87347322 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr7_2:87347324-87347343 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr7_2:87347509-87347528 Msa1086360:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr7_2:87347523-87347542 Msa1086360:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr7_2:87347968-87347987 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr7_2:87347973-87347992 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr7_2:87348116-87348135 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr7_2:87348118-87348137 Msa1086360:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr7_2:87348376-87348395 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr7_2:87348377-87348396 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr7_2:87348431-87348450 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr7_2:87348432-87348451 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr7_2:87348466-87348485 Msa1086360:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr7_2:87348510-87348529 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr7_2:87348631-87348650 Msa1086360:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr7_2:87348654-87348673 Msa1086360:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr7_2:87348655-87348674 Msa1086360:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr7_2:87348712-87348731 Msa1086360:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr7_2:87348769-87348788 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr7_2:87348777-87348796 Msa1086360:CDS 40.0%
GGTTGTTCGTCTCTATCAAT+TGG + chr7_2:87347303-87347322 None:intergenic 40.0%
AAATCGTATGGATACGGTCT+TGG + chr7_2:87347324-87347343 None:intergenic 40.0%
GATTCCATTCAACTCATGGT+TGG - chr7_2:87347509-87347528 Msa1086360:CDS 40.0%
CATGGTTGGGAACTAATGAT+TGG - chr7_2:87347523-87347542 Msa1086360:CDS 40.0%
TGAGCAATACGGAAATGGAT+CGG + chr7_2:87347968-87347987 None:intergenic 40.0%
GATCATGAGCAATACGGAAA+TGG + chr7_2:87347973-87347992 None:intergenic 40.0%
TGTGGAACCTCAATATCTAC+AGG + chr7_2:87348116-87348135 None:intergenic 40.0%
AGATATTGAGGTTCCACAAG+CGG - chr7_2:87348118-87348137 Msa1086360:CDS 40.0%
TATATTTCTTCCCAGGAACG+GGG + chr7_2:87348376-87348395 None:intergenic 40.0%
CTATATTTCTTCCCAGGAAC+GGG + chr7_2:87348377-87348396 None:intergenic 40.0%
TGAACATCTCTCTTAGTAGC+GGG + chr7_2:87348431-87348450 None:intergenic 40.0%
GTGAACATCTCTCTTAGTAG+CGG + chr7_2:87348432-87348451 None:intergenic 40.0%
TATATACGTAGGCGGGAATA+GGG - chr7_2:87348466-87348485 Msa1086360:intron 40.0%
ATTATTACTCTTGCTCCCGT+CGG + chr7_2:87348510-87348529 None:intergenic 40.0%
GTGATTGATATTATACCGCC+AGG - chr7_2:87348631-87348650 Msa1086360:intron 40.0%
! ACCAGAACTTCTTGTTTCAG+AGG - chr7_2:87348654-87348673 Msa1086360:intron 40.0%
! CCAGAACTTCTTGTTTCAGA+GGG - chr7_2:87348655-87348674 Msa1086360:intron 40.0%
! AATCCTAATGTGGGTGGATT+TGG - chr7_2:87348712-87348731 Msa1086360:CDS 40.0%
AACAGACCTTGTACACGTAA+CGG + chr7_2:87348769-87348788 None:intergenic 40.0%
ACAAGGTCTGTTGTTCTTCT+TGG - chr7_2:87348777-87348796 Msa1086360:CDS 40.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr7_2:87347516-87347535 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr7_2:87347967-87347986 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr7_2:87348053-87348072 Msa1086360:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr7_2:87348054-87348073 Msa1086360:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr7_2:87348075-87348094 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr7_2:87348467-87348486 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr7_2:87348465-87348484 Msa1086360:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr7_2:87348467-87348486 Msa1086360:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr7_2:87348509-87348528 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr7_2:87348652-87348671 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr7_2:87348658-87348677 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr7_2:87348706-87348725 Msa1086360:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr7_2:87348718-87348737 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr7_2:87348717-87348736 Msa1086360:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr7_2:87348718-87348737 Msa1086360:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr7_2:87348760-87348779 Msa1086360:CDS 45.0%
! GTTCCCAACCATGAGTTGAA+TGG + chr7_2:87347516-87347535 None:intergenic 45.0%
GAGCAATACGGAAATGGATC+GGG + chr7_2:87347967-87347986 None:intergenic 45.0%
GAAAATCCGAGAGAAGCTAC+CGG - chr7_2:87348053-87348072 Msa1086360:CDS 45.0%
AAAATCCGAGAGAAGCTACC+GGG - chr7_2:87348054-87348073 Msa1086360:CDS 45.0%
ATTAGCACATACAATCCGCC+CGG + chr7_2:87348075-87348094 None:intergenic 45.0%
CTATTCCCGCCTACGTATAT+AGG + chr7_2:87348467-87348486 None:intergenic 45.0%
CTATATACGTAGGCGGGAAT+AGG - chr7_2:87348465-87348484 Msa1086360:intron 45.0%
ATATACGTAGGCGGGAATAG+GGG - chr7_2:87348467-87348486 Msa1086360:intron 45.0%
TTATTACTCTTGCTCCCGTC+GGG + chr7_2:87348509-87348528 None:intergenic 45.0%
! GAAACAAGAAGTTCTGGTCC+TGG + chr7_2:87348652-87348671 None:intergenic 45.0%
!! CCCTCTGAAACAAGAAGTTC+TGG + chr7_2:87348658-87348677 None:intergenic 45.0%
ACGAGTAATCCTAATGTGGG+TGG - chr7_2:87348706-87348725 Msa1086360:CDS 45.0%
TGACCAAATCCACCCACATT+AGG + chr7_2:87348718-87348737 None:intergenic 45.0%
! TAATGTGGGTGGATTTGGTC+AGG - chr7_2:87348717-87348736 Msa1086360:CDS 45.0%
! AATGTGGGTGGATTTGGTCA+GGG - chr7_2:87348718-87348737 Msa1086360:CDS 45.0%
CAAGATCCGTTACGTGTACA+AGG - chr7_2:87348760-87348779 Msa1086360:CDS 45.0%
ATCTCGGGCGAAATACGATC+AGG + chr7_2:87348284-87348303 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr7_2:87348413-87348432 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr7_2:87348425-87348444 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr7_2:87348491-87348510 Msa1086360:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr7_2:87348601-87348620 Msa1086360:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr7_2:87348649-87348668 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr7_2:87348719-87348738 Msa1086360:CDS 50.0%
ATCTCGGGCGAAATACGATC+AGG + chr7_2:87348284-87348303 None:intergenic 50.0%
GCGGGATCTGGAGAAAGAAT+AGG + chr7_2:87348413-87348432 None:intergenic 50.0%
! TCTCTCTTAGTAGCGGGATC+TGG + chr7_2:87348425-87348444 None:intergenic 50.0%
AGGGGTCAGATTTATCCCGA+CGG - chr7_2:87348491-87348510 Msa1086360:intron 50.0%
!! ACGATAGTGGATGCATCGGA+TGG - chr7_2:87348601-87348620 Msa1086360:intron 50.0%
! ACAAGAAGTTCTGGTCCTGG+CGG + chr7_2:87348649-87348668 None:intergenic 50.0%
! ATGTGGGTGGATTTGGTCAG+GGG - chr7_2:87348719-87348738 Msa1086360:CDS 50.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr7_2:87348134-87348153 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr7_2:87348260-87348279 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr7_2:87348279-87348298 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr7_2:87348280-87348299 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr7_2:87348281-87348300 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr7_2:87348492-87348511 Msa1086360:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr7_2:87348720-87348739 Msa1086360:CDS 55.0%
!! GTATCGGGAAGTACCGCTTG+TGG + chr7_2:87348134-87348153 None:intergenic 55.0%
GGGGCCAATTCAAAACCCTC+TGG + chr7_2:87348260-87348279 None:intergenic 55.0%
GGGCGAAATACGATCAGGAG+GGG + chr7_2:87348279-87348298 None:intergenic 55.0%
CGGGCGAAATACGATCAGGA+GGG + chr7_2:87348280-87348299 None:intergenic 55.0%
TCGGGCGAAATACGATCAGG+AGG + chr7_2:87348281-87348300 None:intergenic 55.0%
GGGGTCAGATTTATCCCGAC+GGG - chr7_2:87348492-87348511 Msa1086360:intron 55.0%
! TGTGGGTGGATTTGGTCAGG+GGG - chr7_2:87348720-87348739 Msa1086360:CDS 55.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr7_2:87348057-87348076 Msa1086360:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr7_2:87348062-87348081 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr7_2:87348363-87348382 Msa1086360:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr7_2:87348471-87348490 Msa1086360:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr7_2:87348472-87348491 Msa1086360:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr7_2:87348473-87348492 Msa1086360:intron 60.0%
ATCCGAGAGAAGCTACCGGG+CGG - chr7_2:87348057-87348076 Msa1086360:CDS 60.0%
ATCCGCCCGGTAGCTTCTCT+CGG + chr7_2:87348062-87348081 None:intergenic 60.0%
TTGTGGTAGGCCCCGTTCCT+GGG - chr7_2:87348363-87348382 Msa1086360:intron 60.0%
ACGTAGGCGGGAATAGGGGA+AGG - chr7_2:87348471-87348490 Msa1086360:intron 60.0%
CGTAGGCGGGAATAGGGGAA+GGG - chr7_2:87348472-87348491 Msa1086360:intron 60.0%
GTAGGCGGGAATAGGGGAAG+GGG - chr7_2:87348473-87348492 Msa1086360:intron 60.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr7_2:87348362-87348381 Msa1086360:intron 65.0%
CTTGTGGTAGGCCCCGTTCC+TGG - chr7_2:87348362-87348381 Msa1086360:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87347277 87348882 87347277 ID=Msa1086360;Name=Msa1086360
chr7_2 mRNA 87347277 87348882 87347277 ID=Msa1086360-mRNA-1;Parent=Msa1086360;Name=Msa1086360-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.25|0.2|5|0|340
chr7_2 exon 87348702 87348882 87348702 ID=Msa1086360-mRNA-1:exon:23762;Parent=Msa1086360-mRNA-1
chr7_2 exon 87348044 87348264 87348044 ID=Msa1086360-mRNA-1:exon:23761;Parent=Msa1086360-mRNA-1
chr7_2 exon 87347842 87348031 87347842 ID=Msa1086360-mRNA-1:exon:23760;Parent=Msa1086360-mRNA-1
chr7_2 exon 87347605 87347733 87347605 ID=Msa1086360-mRNA-1:exon:23759;Parent=Msa1086360-mRNA-1
chr7_2 exon 87347277 87347578 87347277 ID=Msa1086360-mRNA-1:exon:23758;Parent=Msa1086360-mRNA-1
chr7_2 CDS 87348702 87348882 87348702 ID=Msa1086360-mRNA-1:cds;Parent=Msa1086360-mRNA-1
chr7_2 CDS 87348044 87348264 87348044 ID=Msa1086360-mRNA-1:cds;Parent=Msa1086360-mRNA-1
chr7_2 CDS 87347842 87348031 87347842 ID=Msa1086360-mRNA-1:cds;Parent=Msa1086360-mRNA-1
chr7_2 CDS 87347605 87347733 87347605 ID=Msa1086360-mRNA-1:cds;Parent=Msa1086360-mRNA-1
chr7_2 CDS 87347277 87347578 87347277 ID=Msa1086360-mRNA-1:cds;Parent=Msa1086360-mRNA-1
Gene Sequence

>Msa1086360

ATGGAAATCTACAAAGAAAGCATCCAATTGATAGAGACGAACAACCAAGACCGTATCCATACGATTTTGCATTTCTGTACAAATATAATATGTTTCCTTATTCTAAGTGGTTATTCTATTAGGGGTAATCAAGAACTCATTATTCTTAACTCTTGGGTTCAAGAATTTCTATATAACTTAAAAATTTTCAGGATGAATGATTGGACCATGCAAACTAGAAATGCTTTTTCTTGGATAAAGGAAGAGATTACCCGATCCATTTCCGTATTGCTCATGATCTATATAATAACTCGAGCACCCATTTCAAATGCATATCCCATTTTTGCTCAACAGGGTTATGAAAATCCGAGAGAAGCTACCGGGCGGATTGTATGTGCTAATTGCCATTTAGCTAATAAGCCTGTTCCACAAGCGGTACTTCCCGATACTGTATTTGAAGCAGTTGTTCGAATTCCTTATGATATGCAAGTTAAACAAGTTCTTGCTAATGGTAAAAAAGGGGCTTTGAATGTAGGTGCTGTTCTTATTTTACCAGAGGGTTTTGAATTGGCCCCTCCTGATCGTATTTCGCCCGAGATTAAAGAAAAAATAGATCCCGCTACTAAGAGAGATGTTCACTTCTTAAAATATCCTATATACGTAGGCGGGAATAGGGGAAGGGGTCAGATTTATCCCGACGGGAGCAAGAGTAATAATAATGTTTATAATGCTACAGCAACAGAAAAAGGTGGATACGAAATAACGATAGTGGATGCATCGGATGGACGTGAAGTGATTGATATTATACCGCCAGGACCAGAACTTCTTGTTTCAGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGATTTGGTCAGGGGGATGCAGAAATAGTGCTTCAAGATCCGTTACGTGTACAAGGTCTGTTGTTCTTCTTGGCATCTATTATTTTGGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTTGAAAAGGTTCAATTGTCCGAAATGAATTTTTAG

Protein sequence

>Msa1086360

MEIYKESIQLIETNNQDRIHTILHFCTNIICFLILSGYSIRGNQELIILNSWVQEFLYNLKIFRMNDWTMQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCHLANKPVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAPPDRISPEIKEKIDPATKRDVHFLKYPIYVGGNRGRGQIYPDGSKSNNNVYNATATEKGGYEITIVDASDGREVIDIIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQIFLVLKKKQFEKVQLSEMNF*