Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060530 | XP_003589593.1 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 4.06e-132 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060530 | sp|Q84QC1|GCT23_ARATH | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 2.34e-94 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060530 | G7I8G3 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 1.94e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000180 | Msa0060530 | 0.816542 | 5.241960e-52 | -8.615850e-47 |
| Msa0011610 | Msa0060530 | 0.940444 | 2.309223e-100 | -8.615850e-47 |
| Msa0012460 | Msa0060530 | 0.800134 | 1.661859e-48 | -8.615850e-47 |
| Msa0060530 | Msa0192020 | 0.810991 | 8.751321e-51 | -8.615850e-47 |
| Msa0060530 | Msa0192710 | 0.806379 | 8.465665e-50 | -8.615850e-47 |
| Msa0060530 | Msa0253410 | 0.825764 | 3.924224e-54 | -8.615850e-47 |
| Msa0060530 | Msa0373220 | 0.816339 | 5.819248e-52 | -8.615850e-47 |
| Msa0060530 | Msa0383570 | 0.817156 | 3.816743e-52 | -8.615850e-47 |
| Msa0060530 | Msa0414990 | 0.809170 | 2.159686e-50 | -8.615850e-47 |
| Msa0060530 | Msa0468020 | 0.816022 | 6.851754e-52 | -8.615850e-47 |
| Msa0060530 | Msa0553350 | 0.822297 | 2.554805e-53 | -8.615850e-47 |
| Msa0060530 | Msa0575460 | 0.802454 | 5.568511e-49 | -8.615850e-47 |
| Msa0060530 | Msa0600390 | 0.801112 | 1.050043e-48 | -8.615850e-47 |
| Msa0060530 | Msa0619060 | 0.806028 | 1.003485e-49 | -8.615850e-47 |
| Msa0060530 | Msa0647710 | 0.837621 | 4.664935e-57 | -8.615850e-47 |
| Msa0060530 | Msa0690530 | 0.832521 | 9.017904e-56 | -8.615850e-47 |
| Msa0060530 | Msa0760730 | 0.822013 | 2.973092e-53 | -8.615850e-47 |
| Msa0060530 | Msa0926860 | 0.805382 | 1.371155e-49 | -8.615850e-47 |
| Msa0060530 | Msa1022310 | 0.810080 | 1.376662e-50 | -8.615850e-47 |
| Msa0060530 | Msa1024120 | 0.811592 | 6.481829e-51 | -8.615850e-47 |
| Msa0060530 | Msa1107950 | 0.821251 | 4.458993e-53 | -8.615850e-47 |
| Msa0060530 | Msa1116010 | 0.820639 | 6.166414e-53 | -8.615850e-47 |
| Msa0060530 | Msa1120660 | 0.804593 | 2.005162e-49 | -8.615850e-47 |
| Msa0060530 | Msa1121630 | 0.804137 | 2.496103e-49 | -8.615850e-47 |
| Msa0060530 | Msa1162470 | 0.811934 | 5.459824e-51 | -8.615850e-47 |
| Msa0060530 | Msa1237750 | 0.802013 | 6.862599e-49 | -8.615850e-47 |
| Msa0060530 | Msa1309100 | 0.818712 | 1.698560e-52 | -8.615850e-47 |
| Msa0060530 | Msa1388610 | 0.804999 | 1.649302e-49 | -8.615850e-47 |
| Msa0060530 | Msa1426870 | 0.819475 | 1.139216e-52 | -8.615850e-47 |
| Msa0060530 | Msa1462600 | 0.816987 | 4.164591e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060530 | MtrunA17_Chr1g0160141 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 3.73e-136 | 377 |
| Msa0060530 | MtrunA17_Chr3g0139221 | 54.444 | 180 | 81 | 1 | 1 | 179 | 1 | 180 | 4.52e-69 | 209 |
| Msa0060530 | MtrunA17_Chr1g0147641 | 47.541 | 183 | 71 | 2 | 1 | 182 | 1 | 159 | 5.50e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0060530 | AT1G44790.1 | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 2.38e-95 | 275 |
| Msa0060530 | AT5G26220.1 | 54.396 | 182 | 82 | 1 | 1 | 181 | 1 | 182 | 6.72e-69 | 209 |
| Msa0060530 | AT4G31290.1 | 52.717 | 184 | 86 | 1 | 1 | 183 | 1 | 184 | 3.53e-67 | 205 |
| Msa0060530 | AT5G26220.2 | 52.874 | 174 | 81 | 1 | 1 | 173 | 1 | 174 | 6.16e-64 | 195 |
Find 56 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAAATTCTGAGTTTAAT+TGG | 0.163058 | 1_2:+18289284 | None:intergenic |
| TTCCAATTAAACTCAGAATT+TGG | 0.190157 | 1_2:-18289286 | Msa0060530:five_prime_UTR |
| AATTCTTTCCAGAATGTTAT+TGG | 0.206562 | 1_2:-18284633 | Msa0060530:three_prime_UTR |
| GCTACAACGCCAGCTATTTC+CGG | 0.218434 | 1_2:-18286037 | Msa0060530:CDS |
| CCACCACAAACATGGCAATA+TGG | 0.253544 | 1_2:-18289195 | Msa0060530:exon |
| AACATGGCAATATGGGTATT+TGG | 0.270077 | 1_2:-18289187 | Msa0060530:CDS |
| ATTATCTTCCAATAACATTC+TGG | 0.280357 | 1_2:+18284625 | None:intergenic |
| CTACAACGCCAGCTATTTCC+GGG | 0.360710 | 1_2:-18286036 | Msa0060530:CDS |
| GAAAAGGCTCTCCTTCAAAT+AGG | 0.367256 | 1_2:-18284876 | Msa0060530:intron |
| TTTACATTGACCTTCTTGTC+TGG | 0.370032 | 1_2:+18285907 | None:intergenic |
| CACCACAAACATGGCAATAT+GGG | 0.400036 | 1_2:-18289194 | Msa0060530:exon |
| AGAGGAACCCCTGAGTTTCC+TGG | 0.406968 | 1_2:-18288981 | Msa0060530:CDS |
| AACTACGATGAACGTCTTGT+TGG | 0.410652 | 1_2:-18289133 | Msa0060530:CDS |
| AAAGATCCTTACCTATTTGA+AGG | 0.411187 | 1_2:+18284865 | None:intergenic |
| AGGAAAAGATACTCTCTGTT+AGG | 0.426813 | 1_2:+18284903 | None:intergenic |
| TGCTAAAGTCTCAGAATGTC+TGG | 0.436572 | 1_2:+18284685 | None:intergenic |
| GCCAGCTATTTCCGGGGCAT+TGG | 0.452973 | 1_2:-18286029 | Msa0060530:CDS |
| TTACATTGACCTTCTTGTCT+GGG | 0.454173 | 1_2:+18285908 | None:intergenic |
| TTGATCTTGCAAATGAAGTC+AGG | 0.482220 | 1_2:-18284755 | Msa0060530:CDS |
| GGTTCTTTGATTTCAAAAGC+TGG | 0.487028 | 1_2:-18289160 | Msa0060530:CDS |
| GAAAGAATTGAAGTTTCCAA+TGG | 0.503777 | 1_2:+18284647 | None:intergenic |
| ATTGCCATGTTTGTGGTGGT+TGG | 0.507092 | 1_2:+18289199 | None:intergenic |
| ACACAAATTTCTCCATCAGC+AGG | 0.508746 | 1_2:+18288939 | None:intergenic |
| ACCAATGCCCCGGAAATAGC+TGG | 0.509461 | 1_2:+18286028 | None:intergenic |
| GATCAATAACATGCTTGTCT+TGG | 0.509648 | 1_2:+18284772 | None:intergenic |
| AATCCATTATTAAAATCCAT+TGG | 0.516300 | 1_2:-18284663 | Msa0060530:three_prime_UTR |
| ACAGTTCTACCAGGAAACTC+AGG | 0.518664 | 1_2:+18288972 | None:intergenic |
| AAGGTCAATGTAAATTATCT+AGG | 0.519474 | 1_2:-18285898 | Msa0060530:CDS |
| TACCCATATTGCCATGTTTG+TGG | 0.520168 | 1_2:+18289192 | None:intergenic |
| GCAATATGGGTATTTGGCTA+CGG | 0.540459 | 1_2:-18289181 | Msa0060530:CDS |
| GTCACATTGGAACCTGCTGA+TGG | 0.545101 | 1_2:-18288951 | Msa0060530:CDS |
| TATAGCATCCCCAGACAAGA+AGG | 0.550775 | 1_2:-18285917 | Msa0060530:CDS |
| TACTCTCTGTTAGGTCCTGT+GGG | 0.551232 | 1_2:+18284912 | None:intergenic |
| ATACTCTCTGTTAGGTCCTG+TGG | 0.551871 | 1_2:+18284911 | None:intergenic |
| TGCACAGTATCTGGGAGTGC+GGG | 0.556827 | 1_2:-18286218 | Msa0060530:intron |
| TATCGACGTGTCTTCTACCA+AGG | 0.557154 | 1_2:-18289097 | Msa0060530:intron |
| TACATTGACCTTCTTGTCTG+GGG | 0.558045 | 1_2:+18285909 | None:intergenic |
| GTAATTGCTGCACAGTATCT+GGG | 0.564368 | 1_2:-18286226 | Msa0060530:intron |
| CCATATTGCCATGTTTGTGG+TGG | 0.571049 | 1_2:+18289195 | None:intergenic |
| TTAAGTTATTTCCATGACAA+AGG | 0.573493 | 1_2:-18284468 | Msa0060530:three_prime_UTR |
| TTAGGTTCTACTGATCATAG+AGG | 0.594149 | 1_2:-18288999 | Msa0060530:intron |
| AGGCAAATAGTTCAAGCTGA+AGG | 0.595905 | 1_2:-18284936 | Msa0060530:CDS |
| TCCAATGTGACAGTTCTACC+AGG | 0.598973 | 1_2:+18288963 | None:intergenic |
| CTGCACAGTATCTGGGAGTG+CGG | 0.602691 | 1_2:-18286219 | Msa0060530:intron |
| ATAACCAACCACCACAAACA+TGG | 0.606349 | 1_2:-18289203 | Msa0060530:exon |
| GTTCAAGCTGAAGGTCCCAC+AGG | 0.607799 | 1_2:-18284927 | Msa0060530:CDS |
| CAGTTCTACCAGGAAACTCA+GGG | 0.609640 | 1_2:+18288973 | None:intergenic |
| TCCTGGTAGAACTGTCACAT+TGG | 0.616450 | 1_2:-18288964 | Msa0060530:CDS |
| GGAGAAGCAATACGATCGGA+AGG | 0.618346 | 1_2:-18286197 | Msa0060530:CDS |
| TTTCACTTACACCAATGCCC+CGG | 0.619835 | 1_2:+18286018 | None:intergenic |
| GAATAAAGAACACAAGTGAG+TGG | 0.620155 | 1_2:+18289254 | None:intergenic |
| TGCGGGAGAAGCAATACGAT+CGG | 0.624661 | 1_2:-18286201 | Msa0060530:CDS |
| CGTCTGTTGAAGAGATTGCA+AGG | 0.629037 | 1_2:-18285870 | Msa0060530:intron |
| GCAATCTCTTCAACAGACGC+AGG | 0.640958 | 1_2:+18285874 | None:intergenic |
| TACAACGCCAGCTATTTCCG+GGG | 0.703197 | 1_2:-18286035 | Msa0060530:CDS |
| AGTTCTACCAGGAAACTCAG+GGG | 0.786483 | 1_2:+18288974 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTCTAAATTTTTTTTT+TGG | + | chr1_2:18285101-18285120 | None:intergenic | 10.0% |
| !!! | TTTTTAAAATCTATAACAAA+CGG | - | chr1_2:18285238-18285257 | Msa0060530:intron | 10.0% |
| !!! | TCATTATTATATAATTGTTT+TGG | - | chr1_2:18287986-18288005 | Msa0060530:intron | 10.0% |
| !! | ATTATCTATTTAAATGAGTT+AGG | - | chr1_2:18287022-18287041 | Msa0060530:intron | 15.0% |
| !!! | TTACTTTTAATTCTATATGA+TGG | - | chr1_2:18287333-18287352 | Msa0060530:intron | 15.0% |
| !!! | TTCTATCTTTTTCATATTAT+AGG | - | chr1_2:18288801-18288820 | Msa0060530:intron | 15.0% |
| !!! | ATATAATAAGTACTGAAATT+GGG | + | chr1_2:18289256-18289275 | None:intergenic | 15.0% |
| !!! | TATATAATAAGTACTGAAAT+TGG | + | chr1_2:18289257-18289276 | None:intergenic | 15.0% |
| !!! | GGAACTTGATAATTAAAAAT+TGG | + | chr1_2:18284851-18284870 | None:intergenic | 20.0% |
| !! | TCAGCAAAAGTAATTAATTA+TGG | + | chr1_2:18284872-18284891 | None:intergenic | 20.0% |
| !!! | TTAATTACTTTTGCTGATTA+AGG | - | chr1_2:18284875-18284894 | Msa0060530:intron | 20.0% |
| !!! | TTTTATAATCAGTAACAAAC+AGG | + | chr1_2:18284931-18284950 | None:intergenic | 20.0% |
| !! | ATTGAATACAACTACATTTA+AGG | + | chr1_2:18285593-18285612 | None:intergenic | 20.0% |
| !! | CTATTACATTAACTTAACAA+AGG | + | chr1_2:18286004-18286023 | None:intergenic | 20.0% |
| !! | AATGCAATCAATATTTGAAA+TGG | - | chr1_2:18286289-18286308 | Msa0060530:intron | 20.0% |
| !!! | AAAAGGAAATTTTGTTATCT+TGG | - | chr1_2:18286727-18286746 | Msa0060530:intron | 20.0% |
| !! | TGATATATGACAAAACATTA+TGG | - | chr1_2:18286917-18286936 | Msa0060530:intron | 20.0% |
| !!! | GAAAGCATTATTGAAAATTT+AGG | + | chr1_2:18287116-18287135 | None:intergenic | 20.0% |
| !! | CTTATTATATTGTCTTTCTT+GGG | - | chr1_2:18287140-18287159 | Msa0060530:intron | 20.0% |
| !! | CATGATAAGTTAAATCTAAA+AGG | - | chr1_2:18288069-18288088 | Msa0060530:intron | 20.0% |
| !!! | AGTTTTAGATAATTTTCAAG+TGG | + | chr1_2:18288269-18288288 | None:intergenic | 20.0% |
| !!! | AAAATTATCTAAAACTCCAA+TGG | - | chr1_2:18288273-18288292 | Msa0060530:intron | 20.0% |
| !! | TAAACAAGAGAAAACAAATA+AGG | - | chr1_2:18288384-18288403 | Msa0060530:intron | 20.0% |
| !! | AAACAAGAGAAAACAAATAA+GGG | - | chr1_2:18288385-18288404 | Msa0060530:intron | 20.0% |
| !!! | CATATTTTTACATCAAGTAT+TGG | - | chr1_2:18288665-18288684 | Msa0060530:intron | 20.0% |
| !! | AATCCATTATTAAAATCCAT+TGG | - | chr1_2:18289094-18289113 | Msa0060530:intron | 20.0% |
| !!! | TTTCCAATGGATTTTAATAA+TGG | + | chr1_2:18289100-18289119 | None:intergenic | 20.0% |
| ! | TTCCAATTAAACTCAGAATT+TGG | - | chr1_2:18284471-18284490 | Msa0060530:three_prime_UTR | 25.0% |
| ! | TTGAATTTGAAAAGTAACCT+TGG | + | chr1_2:18284680-18284699 | None:intergenic | 25.0% |
| !!! | TTTAGAGATTTTTTTGTCCT+TGG | - | chr1_2:18284977-18284996 | Msa0060530:intron | 25.0% |
| !!! | TTTTTTTTGGTCAAGTAAGA+TGG | + | chr1_2:18285088-18285107 | None:intergenic | 25.0% |
| ! | ACGTAAAAAATGTAACAAAC+AGG | - | chr1_2:18285313-18285332 | Msa0060530:intron | 25.0% |
| !! | AATAAGTTGAAAACAACTTG+TGG | - | chr1_2:18285477-18285496 | Msa0060530:intron | 25.0% |
| !! | CATTTTGCAAAAGGTTAAAA+AGG | + | chr1_2:18285753-18285772 | None:intergenic | 25.0% |
| !! | CTTTTTAACCTTTTGCAAAA+TGG | - | chr1_2:18285751-18285770 | Msa0060530:intron | 25.0% |
| !!! | TATTCACATTGTTTTGAAGT+TGG | - | chr1_2:18285804-18285823 | Msa0060530:intron | 25.0% |
| ! | CTCTTGAAAAAATTGTTGAT+TGG | - | chr1_2:18285929-18285948 | Msa0060530:intron | 25.0% |
| ! | ATTAAGTACTTATCAAGAGT+GGG | - | chr1_2:18286039-18286058 | Msa0060530:CDS | 25.0% |
| !!! | GGTTTTAGTTAGTCTTTTTA+AGG | - | chr1_2:18286060-18286079 | Msa0060530:intron | 25.0% |
| ! | CGAAGATAAAAAGTTAAATG+TGG | + | chr1_2:18286161-18286180 | None:intergenic | 25.0% |
| ! | TTATCTTCGCTTAATTACAT+TGG | - | chr1_2:18286172-18286191 | Msa0060530:intron | 25.0% |
| ! | AAAAACAACAAACACTAAGA+AGG | + | chr1_2:18286198-18286217 | None:intergenic | 25.0% |
| ! | GATAATCTATTGGACATATA+AGG | + | chr1_2:18286566-18286585 | None:intergenic | 25.0% |
| !! | TTTTGACAAGTATTAGCTAT+TGG | + | chr1_2:18286690-18286709 | None:intergenic | 25.0% |
| !! | GTTTCTTTCATAGTTTTTCT+AGG | + | chr1_2:18286856-18286875 | None:intergenic | 25.0% |
| ! | AGATTTAGAGATTAATGAGT+TGG | - | chr1_2:18286885-18286904 | Msa0060530:intron | 25.0% |
| ! | CCAAGAAAGACAATATAATA+AGG | + | chr1_2:18287142-18287161 | None:intergenic | 25.0% |
| ! | CCTTATTATATTGTCTTTCT+TGG | - | chr1_2:18287139-18287158 | Msa0060530:intron | 25.0% |
| ! | TGTTACAAAGAATGTTATGA+TGG | + | chr1_2:18287177-18287196 | None:intergenic | 25.0% |
| ! | GACTATAATTATAAGTCTCA+AGG | + | chr1_2:18287379-18287398 | None:intergenic | 25.0% |
| ! | GTTACTTATTCCACTAATAA+AGG | - | chr1_2:18287670-18287689 | Msa0060530:intron | 25.0% |
| ! | AAAAGTTCAACCTTTATTAG+TGG | + | chr1_2:18287683-18287702 | None:intergenic | 25.0% |
| !!! | AAGGTTGAACTTTTTTTTTC+AGG | - | chr1_2:18287689-18287708 | Msa0060530:intron | 25.0% |
| ! | AAGGTCAATGTAAATTATCT+AGG | - | chr1_2:18287859-18287878 | Msa0060530:intron | 25.0% |
| !! | TATTTACTAGTCTCAATTTG+TGG | - | chr1_2:18287937-18287956 | Msa0060530:intron | 25.0% |
| ! | AATAATGAATACTCCAGTAA+AGG | + | chr1_2:18287974-18287993 | None:intergenic | 25.0% |
| ! | GAATCATAATACCTAGATAT+AGG | - | chr1_2:18288162-18288181 | Msa0060530:intron | 25.0% |
| !!! | CACTTTTTTGTATTTTTGTG+TGG | - | chr1_2:18288205-18288224 | Msa0060530:intron | 25.0% |
| !! | TGCTAGTTTGACAAAAATAA+GGG | + | chr1_2:18288438-18288457 | None:intergenic | 25.0% |
| ! | GTAAAACCATTATGAATACA+AGG | - | chr1_2:18288599-18288618 | Msa0060530:intron | 25.0% |
| !!! | TTACATCAAGTATTGGTTAA+TGG | - | chr1_2:18288672-18288691 | Msa0060530:intron | 25.0% |
| ! | TTAATGAACCTAAATTTCCA+GGG | + | chr1_2:18288756-18288775 | None:intergenic | 25.0% |
| ! | ATTAATGAACCTAAATTTCC+AGG | + | chr1_2:18288757-18288776 | None:intergenic | 25.0% |
| ! | AAGATAGAAATCAAACTCAA+AGG | + | chr1_2:18288790-18288809 | None:intergenic | 25.0% |
| ! | AATTCTTTCCAGAATGTTAT+TGG | - | chr1_2:18289124-18289143 | Msa0060530:CDS | 25.0% |
| ! | ATTATCTTCCAATAACATTC+TGG | + | chr1_2:18289135-18289154 | None:intergenic | 25.0% |
| !! | TTAAGTTATTTCCATGACAA+AGG | - | chr1_2:18289289-18289308 | Msa0060530:five_prime_UTR | 25.0% |
| TGCCAAATTCTGAGTTTAAT+TGG | + | chr1_2:18284476-18284495 | None:intergenic | 30.0% | |
| TACATCAAAATCTTCACTGA+TGG | - | chr1_2:18284731-18284750 | Msa0060530:CDS | 30.0% | |
| ACATCAAAATCTTCACTGAT+GGG | - | chr1_2:18284732-18284751 | Msa0060530:CDS | 30.0% | |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr1_2:18285050-18285069 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1_2:18285051-18285070 | None:intergenic | 30.0% |
| TCCAGAATAGCTTATGAAAA+CGG | + | chr1_2:18285446-18285465 | None:intergenic | 30.0% | |
| ! | AACTACATTTAAGGCTTGTT+TGG | + | chr1_2:18285584-18285603 | None:intergenic | 30.0% |
| ! | TTTTCTTGGATACACATACT+AGG | + | chr1_2:18285627-18285646 | None:intergenic | 30.0% |
| !!! | GAAAGTCATACTAGTTTTCT+TGG | + | chr1_2:18285641-18285660 | None:intergenic | 30.0% |
| TTTGATAAAAGATTGCTGTG+TGG | - | chr1_2:18285701-18285720 | Msa0060530:intron | 30.0% | |
| TGGAACTTACTTCAAAAAGT+CGG | - | chr1_2:18285824-18285843 | Msa0060530:intron | 30.0% | |
| !!! | AATTTTTTCAAGAGCCTACA+CGG | + | chr1_2:18285923-18285942 | None:intergenic | 30.0% |
| CAAAGGTTCAATTCAACAAA+TGG | + | chr1_2:18285987-18286006 | None:intergenic | 30.0% | |
| TTAATGTAATAGCTGCTGTA+TGG | - | chr1_2:18286012-18286031 | Msa0060530:intron | 30.0% | |
| CATTAAGTACTTATCAAGAG+TGG | - | chr1_2:18286038-18286057 | Msa0060530:CDS | 30.0% | |
| ! | TCAAACTTTTGACCAAGTTT+TGG | - | chr1_2:18286450-18286469 | Msa0060530:intron | 30.0% |
| ATCTCTATGGGATAATCTAT+TGG | + | chr1_2:18286576-18286595 | None:intergenic | 30.0% | |
| TAGCAATGACTAATCTCTAT+GGG | + | chr1_2:18286588-18286607 | None:intergenic | 30.0% | |
| TTAGCAATGACTAATCTCTA+TGG | + | chr1_2:18286589-18286608 | None:intergenic | 30.0% | |
| TGAAATTCTCAGCATACAAA+AGG | - | chr1_2:18286710-18286729 | Msa0060530:intron | 30.0% | |
| ACTAAGTGAAATTGACTACA+TGG | + | chr1_2:18286954-18286973 | None:intergenic | 30.0% | |
| ATGTAGTCAATTTCACTTAG+TGG | - | chr1_2:18286953-18286972 | Msa0060530:intron | 30.0% | |
| TGTAGTCAATTTCACTTAGT+GGG | - | chr1_2:18286954-18286973 | Msa0060530:intron | 30.0% | |
| TCTTTCGTCATTTCTACAAT+AGG | - | chr1_2:18287077-18287096 | Msa0060530:intron | 30.0% | |
| CATAGCTAATTAGATCATTG+TGG | - | chr1_2:18287803-18287822 | Msa0060530:intron | 30.0% | |
| GGTATAAACTTAACCTTTAC+TGG | - | chr1_2:18287958-18287977 | Msa0060530:intron | 30.0% | |
| ! | GTGCTAGTTTGACAAAAATA+AGG | + | chr1_2:18288439-18288458 | None:intergenic | 30.0% |
| !! | TATTTTTGTCAAACTAGCAC+CGG | - | chr1_2:18288439-18288458 | Msa0060530:intron | 30.0% |
| CACAAACCTTGTATTCATAA+TGG | + | chr1_2:18288608-18288627 | None:intergenic | 30.0% | |
| ! | GTATCTTTTCCTACTTGAAA+AGG | - | chr1_2:18288865-18288884 | Msa0060530:intron | 30.0% |
| AAAGATCCTTACCTATTTGA+AGG | + | chr1_2:18288895-18288914 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTGATCACCTCTT+AGG | - | chr1_2:18288959-18288978 | Msa0060530:CDS | 30.0% |
| GAAAGAATTGAAGTTTCCAA+TGG | + | chr1_2:18289113-18289132 | None:intergenic | 30.0% | |
| GAATAAAGAACACAAGTGAG+TGG | + | chr1_2:18284506-18284525 | None:intergenic | 35.0% | |
| AACATGGCAATATGGGTATT+TGG | - | chr1_2:18284570-18284589 | Msa0060530:intron | 35.0% | |
| ! | GGTTCTTTGATTTCAAAAGC+TGG | - | chr1_2:18284597-18284616 | Msa0060530:three_prime_UTR | 35.0% |
| !!! | ATCTTCACTGATGGGTTTTT+AGG | - | chr1_2:18284740-18284759 | Msa0060530:CDS | 35.0% |
| TTAGGTTCTACTGATCATAG+AGG | - | chr1_2:18284758-18284777 | Msa0060530:CDS | 35.0% | |
| !! | TTGCTGATTAAGGTCTTGTT+TGG | - | chr1_2:18284885-18284904 | Msa0060530:CDS | 35.0% |
| ! | GACAAGCATTGTTATATGCA+GGG | - | chr1_2:18285003-18285022 | Msa0060530:intron | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1_2:18285052-18285071 | None:intergenic | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1_2:18285049-18285068 | Msa0060530:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1_2:18285063-18285082 | None:intergenic | 35.0% |
| TACTTGATTGTCTTGACTGT+AGG | - | chr1_2:18285888-18285907 | Msa0060530:CDS | 35.0% | |
| ACTTGATTGTCTTGACTGTA+GGG | - | chr1_2:18285889-18285908 | Msa0060530:CDS | 35.0% | |
| ! | GATACTTACTCTGTTTTGCA+AGG | - | chr1_2:18286311-18286330 | Msa0060530:intron | 35.0% |
| !! | CTTTTGACCAAGTTTTGGTA+TGG | - | chr1_2:18286455-18286474 | Msa0060530:intron | 35.0% |
| AAGGGTTCAAACTTTAGCAT+TGG | - | chr1_2:18286502-18286521 | Msa0060530:intron | 35.0% | |
| ! | GATTAGTCATTGCTAAACTG+CGG | - | chr1_2:18286593-18286612 | Msa0060530:intron | 35.0% |
| TACCCAAGAAAGTTCAAACT+TGG | - | chr1_2:18286641-18286660 | Msa0060530:intron | 35.0% | |
| ACCCAAGAAAGTTCAAACTT+GGG | - | chr1_2:18286642-18286661 | Msa0060530:intron | 35.0% | |
| TTAGTCGAATCTCTATCACA+TGG | + | chr1_2:18286779-18286798 | None:intergenic | 35.0% | |
| ! | GATTCGACTAAGTTTTACGT+TGG | - | chr1_2:18286788-18286807 | Msa0060530:intron | 35.0% |
| ATTCTCACATTAGATGGCTT+TGG | + | chr1_2:18287058-18287077 | None:intergenic | 35.0% | |
| CGAAAGATTCTCACATTAGA+TGG | + | chr1_2:18287064-18287083 | None:intergenic | 35.0% | |
| TTCGTCATTTCTACAATAGG+TGG | - | chr1_2:18287080-18287099 | Msa0060530:intron | 35.0% | |
| !! | AGAATGTTATGATGGATGAG+TGG | + | chr1_2:18287169-18287188 | None:intergenic | 35.0% |
| GTCTCAAGGTTTAAGTATCT+TGG | + | chr1_2:18287365-18287384 | None:intergenic | 35.0% | |
| GCTTAAGTAGAGGTAAAAGT+TGG | + | chr1_2:18287403-18287422 | None:intergenic | 35.0% | |
| TTCATCAAACGTCACTATGT+CGG | - | chr1_2:18287486-18287505 | Msa0060530:intron | 35.0% | |
| CATTTGGCCTCAAAAAATCT+TGG | + | chr1_2:18287620-18287639 | None:intergenic | 35.0% | |
| !!! | AGATTTTTTGAGGCCAAATG+AGG | - | chr1_2:18287620-18287639 | Msa0060530:intron | 35.0% |
| TTACATTGACCTTCTTGTCT+GGG | + | chr1_2:18287852-18287871 | None:intergenic | 35.0% | |
| TTTACATTGACCTTCTTGTC+TGG | + | chr1_2:18287853-18287872 | None:intergenic | 35.0% | |
| ACTAATTCATAAGCCTCCTA+AGG | + | chr1_2:18288021-18288040 | None:intergenic | 35.0% | |
| !! | GATTCCTAGACTTTGAAATG+TGG | + | chr1_2:18288147-18288166 | None:intergenic | 35.0% |
| TTCAGCATGATCCTATATCT+AGG | + | chr1_2:18288176-18288195 | None:intergenic | 35.0% | |
| AGACAAAAATGCCATCAATC+AGG | + | chr1_2:18288365-18288384 | None:intergenic | 35.0% | |
| CAGTTACAATACATGAACCA+TGG | + | chr1_2:18288722-18288741 | None:intergenic | 35.0% | |
| TTTGAATGCCCTGGAAATTT+AGG | - | chr1_2:18288745-18288764 | Msa0060530:intron | 35.0% | |
| AGGAAAAGATACTCTCTGTT+AGG | + | chr1_2:18288857-18288876 | None:intergenic | 35.0% | |
| GATCAATAACATGCTTGTCT+TGG | + | chr1_2:18288988-18289007 | None:intergenic | 35.0% | |
| TTGATCTTGCAAATGAAGTC+AGG | - | chr1_2:18289002-18289021 | Msa0060530:intron | 35.0% | |
| !! | ATTGGGTTCTACTTTTGCAA+TGG | + | chr1_2:18289239-18289258 | None:intergenic | 35.0% |
| ATAACCAACCACCACAAACA+TGG | - | chr1_2:18284554-18284573 | Msa0060530:intron | 40.0% | |
| CACCACAAACATGGCAATAT+GGG | - | chr1_2:18284563-18284582 | Msa0060530:intron | 40.0% | |
| TACCCATATTGCCATGTTTG+TGG | + | chr1_2:18284568-18284587 | None:intergenic | 40.0% | |
| GCAATATGGGTATTTGGCTA+CGG | - | chr1_2:18284576-18284595 | Msa0060530:three_prime_UTR | 40.0% | |
| AACTACGATGAACGTCTTGT+TGG | - | chr1_2:18284624-18284643 | Msa0060530:three_prime_UTR | 40.0% | |
| ACACAAATTTCTCCATCAGC+AGG | + | chr1_2:18284821-18284840 | None:intergenic | 40.0% | |
| !!! | GAGATTTTTTTGTCCTTGGC+AGG | - | chr1_2:18284981-18285000 | Msa0060530:intron | 40.0% |
| ! | GGACAAGCATTGTTATATGC+AGG | - | chr1_2:18285002-18285021 | Msa0060530:intron | 40.0% |
| !! | GCCGTTTTCATAAGCTATTC+TGG | - | chr1_2:18285442-18285461 | Msa0060530:intron | 40.0% |
| AGTCACACATGTGCTTATGT+CGG | - | chr1_2:18285535-18285554 | Msa0060530:intron | 40.0% | |
| TCTTGGATACACATACTAGG+AGG | + | chr1_2:18285624-18285643 | None:intergenic | 40.0% | |
| ! | TCTCGCAACCATTTTGCAAA+AGG | + | chr1_2:18285762-18285781 | None:intergenic | 40.0% |
| TGCAAAATGGTTGCGAGAAA+TGG | - | chr1_2:18285764-18285783 | Msa0060530:intron | 40.0% | |
| ACGAGTTGTCCGATATCAAA+TGG | - | chr1_2:18285850-18285869 | Msa0060530:intron | 40.0% | |
| CGATCTCAGCCATTTGATAT+CGG | + | chr1_2:18285862-18285881 | None:intergenic | 40.0% | |
| TGTCTTGACTGTAGGGAATA+CGG | - | chr1_2:18285896-18285915 | Msa0060530:CDS | 40.0% | |
| ! | TCTGTTTTGCAAGGAGATAG+TGG | - | chr1_2:18286320-18286339 | Msa0060530:intron | 40.0% |
| ! | CTGTTTTGCAAGGAGATAGT+GGG | - | chr1_2:18286321-18286340 | Msa0060530:intron | 40.0% |
| ! | TGTTTTGCAAGGAGATAGTG+GGG | - | chr1_2:18286322-18286341 | Msa0060530:intron | 40.0% |
| !! | CCAAGTTTTGGTATGGAACT+CGG | - | chr1_2:18286462-18286481 | Msa0060530:intron | 40.0% |
| GACACCTTAAACTAGGTCAA+GGG | - | chr1_2:18286484-18286503 | Msa0060530:intron | 40.0% | |
| TGAACCCTTGACCTAGTTTA+AGG | + | chr1_2:18286491-18286510 | None:intergenic | 40.0% | |
| ! | GGTTCAAACTTTAGCATTGG+TGG | - | chr1_2:18286505-18286524 | Msa0060530:intron | 40.0% |
| !! | ACTTTAGCATTGGTGGTGTA+TGG | - | chr1_2:18286512-18286531 | Msa0060530:intron | 40.0% |
| GTGTATGGTGAAACCTGATT+GGG | - | chr1_2:18286527-18286546 | Msa0060530:intron | 40.0% | |
| TTTCTTGGGTAACTATGTGC+AGG | + | chr1_2:18286632-18286651 | None:intergenic | 40.0% | |
| CCCCAAGTTTGAACTTTCTT+GGG | + | chr1_2:18286646-18286665 | None:intergenic | 40.0% | |
| CCCAAGAAAGTTCAAACTTG+GGG | - | chr1_2:18286643-18286662 | Msa0060530:intron | 40.0% | |
| CCAAGAAAGTTCAAACTTGG+GGG | - | chr1_2:18286644-18286663 | Msa0060530:intron | 40.0% | |
| CAAGAAAGTTCAAACTTGGG+GGG | - | chr1_2:18286645-18286664 | Msa0060530:intron | 40.0% | |
| ! | CGTGACTTTTGCTTAAGTAG+AGG | + | chr1_2:18287413-18287432 | None:intergenic | 40.0% |
| TGTAATTGCTGCACAGTATC+TGG | - | chr1_2:18287530-18287549 | Msa0060530:intron | 40.0% | |
| GTAATTGCTGCACAGTATCT+GGG | - | chr1_2:18287531-18287550 | Msa0060530:intron | 40.0% | |
| ! | GTTTTCACTGTAAGTGTCAC+AGG | - | chr1_2:18287594-18287613 | Msa0060530:intron | 40.0% |
| !!! | TCACAGGCCAAGATTTTTTG+AGG | - | chr1_2:18287610-18287629 | Msa0060530:intron | 40.0% |
| ACGAAATGATGCACCTCATT+TGG | + | chr1_2:18287636-18287655 | None:intergenic | 40.0% | |
| TACATTGACCTTCTTGTCTG+GGG | + | chr1_2:18287851-18287870 | None:intergenic | 40.0% | |
| GATGCCACATTTCAAAGTCT+AGG | - | chr1_2:18288140-18288159 | Msa0060530:intron | 40.0% | |
| !!! | AATTTTCAAGTGGCGATCCA+AGG | + | chr1_2:18288259-18288278 | None:intergenic | 40.0% |
| ACTCCAATGGTGATTGATGT+CGG | - | chr1_2:18288286-18288305 | Msa0060530:intron | 40.0% | |
| TCGTGAACTTCTACTTCTGA+GGG | + | chr1_2:18288312-18288331 | None:intergenic | 40.0% | |
| CTATCTCGGACATTACAACA+AGG | + | chr1_2:18288339-18288358 | None:intergenic | 40.0% | |
| CATCAATCAGGTCACTATCT+CGG | + | chr1_2:18288353-18288372 | None:intergenic | 40.0% | |
| AACTGAGATGATGACCAAAC+CGG | + | chr1_2:18288461-18288480 | None:intergenic | 40.0% | |
| ATCTCAGTTGTGAGGACAAA+GGG | - | chr1_2:18288472-18288491 | Msa0060530:intron | 40.0% | |
| TCTCCAAAAGCAGAAATCCA+CGG | + | chr1_2:18288500-18288519 | None:intergenic | 40.0% | |
| CAAGGTTTGTGATCTCGTTA+TGG | - | chr1_2:18288617-18288636 | Msa0060530:intron | 40.0% | |
| !! | TAACTGTGTTTTGAATGCCC+TGG | - | chr1_2:18288736-18288755 | Msa0060530:intron | 40.0% |
| AGGCAAATAGTTCAAGCTGA+AGG | - | chr1_2:18288821-18288840 | Msa0060530:intron | 40.0% | |
| GAAAAGGCTCTCCTTCAAAT+AGG | - | chr1_2:18288881-18288900 | Msa0060530:intron | 40.0% | |
| TGCTAAAGTCTCAGAATGTC+TGG | + | chr1_2:18289075-18289094 | None:intergenic | 40.0% | |
| !! | GGTTCTACTTTTGCAATGGT+TGG | + | chr1_2:18289235-18289254 | None:intergenic | 40.0% |
| ATTGCCATGTTTGTGGTGGT+TGG | + | chr1_2:18284561-18284580 | None:intergenic | 45.0% | |
| CCATATTGCCATGTTTGTGG+TGG | + | chr1_2:18284565-18284584 | None:intergenic | 45.0% | |
| CCACCACAAACATGGCAATA+TGG | - | chr1_2:18284562-18284581 | Msa0060530:intron | 45.0% | |
| TATCGACGTGTCTTCTACCA+AGG | - | chr1_2:18284660-18284679 | Msa0060530:three_prime_UTR | 45.0% | |
| AGTTCTACCAGGAAACTCAG+GGG | + | chr1_2:18284786-18284805 | None:intergenic | 45.0% | |
| CAGTTCTACCAGGAAACTCA+GGG | + | chr1_2:18284787-18284806 | None:intergenic | 45.0% | |
| ACAGTTCTACCAGGAAACTC+AGG | + | chr1_2:18284788-18284807 | None:intergenic | 45.0% | |
| TCCTGGTAGAACTGTCACAT+TGG | - | chr1_2:18284793-18284812 | Msa0060530:intron | 45.0% | |
| TCCAATGTGACAGTTCTACC+AGG | + | chr1_2:18284797-18284816 | None:intergenic | 45.0% | |
| TAACAATGCTTGTCCTGCCA+AGG | + | chr1_2:18284997-18285016 | None:intergenic | 45.0% | |
| AGCATTGTTATATGCAGGGC+CGG | - | chr1_2:18285007-18285026 | Msa0060530:intron | 45.0% | |
| CCGAGTTCCATACCAAAACT+TGG | + | chr1_2:18286465-18286484 | None:intergenic | 45.0% | |
| GAACTCGGACACCTTAAACT+AGG | - | chr1_2:18286477-18286496 | Msa0060530:intron | 45.0% | |
| GGACACCTTAAACTAGGTCA+AGG | - | chr1_2:18286483-18286502 | Msa0060530:intron | 45.0% | |
| GGTGTATGGTGAAACCTGAT+TGG | - | chr1_2:18286526-18286545 | Msa0060530:intron | 45.0% | |
| TATGGTGAAACCTGATTGGG+AGG | - | chr1_2:18286530-18286549 | Msa0060530:intron | 45.0% | |
| ATGGTGAAACCTGATTGGGA+GGG | - | chr1_2:18286531-18286550 | Msa0060530:intron | 45.0% | |
| TAGTCATTGCTAAACTGCGG+TGG | - | chr1_2:18286596-18286615 | Msa0060530:intron | 45.0% | |
| CCCCCAAGTTTGAACTTTCT+TGG | + | chr1_2:18286647-18286666 | None:intergenic | 45.0% | |
| TTTCACTTACACCAATGCCC+CGG | + | chr1_2:18287742-18287761 | None:intergenic | 45.0% | |
| TATAGCATCCCCAGACAAGA+AGG | - | chr1_2:18287840-18287859 | Msa0060530:intron | 45.0% | |
| CGTCTGTTGAAGAGATTGCA+AGG | - | chr1_2:18287887-18287906 | Msa0060530:intron | 45.0% | |
| !!! | GTTTTGGAGATCCTTGCCTT+AGG | - | chr1_2:18288002-18288021 | Msa0060530:intron | 45.0% |
| TTCATAAGCCTCCTAAGGCA+AGG | + | chr1_2:18288016-18288035 | None:intergenic | 45.0% | |
| GTCGTGAACTTCTACTTCTG+AGG | + | chr1_2:18288313-18288332 | None:intergenic | 45.0% | |
| CTCGGACATTACAACAAGGA+GGG | + | chr1_2:18288335-18288354 | None:intergenic | 45.0% | |
| TCTCGGACATTACAACAAGG+AGG | + | chr1_2:18288336-18288355 | None:intergenic | 45.0% | |
| CGAGATAGTGACCTGATTGA+TGG | - | chr1_2:18288351-18288370 | Msa0060530:intron | 45.0% | |
| !! | TTGTCAAACTAGCACCGGTT+TGG | - | chr1_2:18288444-18288463 | Msa0060530:intron | 45.0% |
| TGGTCATCATCTCAGTTGTG+AGG | - | chr1_2:18288464-18288483 | Msa0060530:intron | 45.0% | |
| CATCTCAGTTGTGAGGACAA+AGG | - | chr1_2:18288471-18288490 | Msa0060530:intron | 45.0% | |
| TCTCAGTTGTGAGGACAAAG+GGG | - | chr1_2:18288473-18288492 | Msa0060530:intron | 45.0% | |
| GTGATCTCGTTATGGACACA+CGG | - | chr1_2:18288625-18288644 | Msa0060530:intron | 45.0% | |
| TGAACCATGGCAAGTTCTAC+TGG | + | chr1_2:18288709-18288728 | None:intergenic | 45.0% | |
| TACTCTCTGTTAGGTCCTGT+GGG | + | chr1_2:18288848-18288867 | None:intergenic | 45.0% | |
| ATACTCTCTGTTAGGTCCTG+TGG | + | chr1_2:18288849-18288868 | None:intergenic | 45.0% | |
| !!! | GAAGGAGAGCCTTTTCAAGT+AGG | + | chr1_2:18288877-18288896 | None:intergenic | 45.0% |
| GGCTCTCCTTCAAATAGGTA+AGG | - | chr1_2:18288886-18288905 | Msa0060530:intron | 45.0% | |
| CACTTCTACTCAGCTGCATT+AGG | + | chr1_2:18289209-18289228 | None:intergenic | 45.0% | |
| CTAATGCAGCTGAGTAGAAG+TGG | - | chr1_2:18289207-18289226 | Msa0060530:five_prime_UTR | 45.0% | |
| GTCACATTGGAACCTGCTGA+TGG | - | chr1_2:18284806-18284825 | Msa0060530:intron | 50.0% | |
| GCATTGTTATATGCAGGGCC+GGG | - | chr1_2:18285008-18285027 | Msa0060530:intron | 50.0% | |
| CATTGTTATATGCAGGGCCG+GGG | - | chr1_2:18285009-18285028 | Msa0060530:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr1_2:18285043-18285062 | None:intergenic | 50.0% |
| TGAGTTCTACCCTCCCAATC+AGG | + | chr1_2:18286543-18286562 | None:intergenic | 50.0% | |
| ACCTCTAGTGGTCGCATACT+AGG | + | chr1_2:18286824-18286843 | None:intergenic | 50.0% | |
| AGTATGCGACCACTAGAGGT+AGG | - | chr1_2:18286824-18286843 | Msa0060530:intron | 50.0% | |
| GTATGCGACCACTAGAGGTA+GGG | - | chr1_2:18286825-18286844 | Msa0060530:intron | 50.0% | |
| TATGCGACCACTAGAGGTAG+GGG | - | chr1_2:18286826-18286845 | Msa0060530:intron | 50.0% | |
| TGCGGGAGAAGCAATACGAT+CGG | - | chr1_2:18287556-18287575 | Msa0060530:intron | 50.0% | |
| GGAGAAGCAATACGATCGGA+AGG | - | chr1_2:18287560-18287579 | Msa0060530:intron | 50.0% | |
| ! | GCTACAACGCCAGCTATTTC+CGG | - | chr1_2:18287720-18287739 | Msa0060530:intron | 50.0% |
| ! | CTACAACGCCAGCTATTTCC+GGG | - | chr1_2:18287721-18287740 | Msa0060530:intron | 50.0% |
| ! | TACAACGCCAGCTATTTCCG+GGG | - | chr1_2:18287722-18287741 | Msa0060530:intron | 50.0% |
| GCAATCTCTTCAACAGACGC+AGG | + | chr1_2:18287886-18287905 | None:intergenic | 50.0% | |
| TTGGAGATCCTTGCCTTAGG+AGG | - | chr1_2:18288005-18288024 | Msa0060530:intron | 50.0% | |
| TGGTTCACGAGCAAGTTCCA+CGG | - | chr1_2:18288225-18288244 | Msa0060530:intron | 50.0% | |
| ! | GGACCGTGGATTTCTGCTTT+TGG | - | chr1_2:18288494-18288513 | Msa0060530:intron | 50.0% |
| CCATGGCAAGTTCTACTGGT+GGG | + | chr1_2:18288705-18288724 | None:intergenic | 50.0% | |
| ACCATGGCAAGTTCTACTGG+TGG | + | chr1_2:18288706-18288725 | None:intergenic | 50.0% | |
| GCTTGTCTTGGCATCCTAAG+AGG | + | chr1_2:18288976-18288995 | None:intergenic | 50.0% | |
| AGAGGAACCCCTGAGTTTCC+TGG | - | chr1_2:18284776-18284795 | Msa0060530:CDS | 55.0% | |
| ! | GTGAATAAGTGGGGTGTCCG+GGG | + | chr1_2:18285041-18285060 | None:intergenic | 55.0% |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr1_2:18285042-18285061 | None:intergenic | 55.0% |
| GTAGGGAATACGGACCGTGT+AGG | - | chr1_2:18285906-18285925 | Msa0060530:CDS | 55.0% | |
| GCCTAGTATGCGACCACTAG+AGG | - | chr1_2:18286820-18286839 | Msa0060530:intron | 55.0% | |
| ATGCGACCACTAGAGGTAGG+GGG | - | chr1_2:18286827-18286846 | Msa0060530:intron | 55.0% | |
| CTGCACAGTATCTGGGAGTG+CGG | - | chr1_2:18287538-18287557 | Msa0060530:intron | 55.0% | |
| ! | TGCACAGTATCTGGGAGTGC+GGG | - | chr1_2:18287539-18287558 | Msa0060530:intron | 55.0% |
| ACCAATGCCCCGGAAATAGC+TGG | + | chr1_2:18287732-18287751 | None:intergenic | 55.0% | |
| TTCACGAGCAAGTTCCACGG+TGG | - | chr1_2:18288228-18288247 | Msa0060530:intron | 55.0% | |
| GTTCCACGGTGGTATCACCT+TGG | - | chr1_2:18288239-18288258 | Msa0060530:intron | 55.0% | |
| GATCCAAGGTGATACCACCG+TGG | + | chr1_2:18288245-18288264 | None:intergenic | 55.0% | |
| GGGCCGACATCAATCACCAT+TGG | + | chr1_2:18288292-18288311 | None:intergenic | 55.0% | |
| TGGCAAGTTCTACTGGTGGG+TGG | + | chr1_2:18288702-18288721 | None:intergenic | 55.0% | |
| CCCACCAGTAGAACTTGCCA+TGG | - | chr1_2:18288702-18288721 | Msa0060530:intron | 55.0% | |
| GTTCAAGCTGAAGGTCCCAC+AGG | - | chr1_2:18288830-18288849 | Msa0060530:intron | 55.0% | |
| AGGTCTCCCCCTACCTCTAG+TGG | + | chr1_2:18286836-18286855 | None:intergenic | 60.0% | |
| ! | GCCAGCTATTTCCGGGGCAT+TGG | - | chr1_2:18287728-18287747 | Msa0060530:intron | 60.0% |
| TGTGAGGACAAAGGGGACCG+TGG | - | chr1_2:18288480-18288499 | Msa0060530:intron | 60.0% | |
| GGTGTCCGGGGTTCGAACCC+CGG | + | chr1_2:18285029-18285048 | None:intergenic | 70.0% | |
| CAGGGCCGGGGTTCGAACCC+CGG | - | chr1_2:18285021-18285040 | Msa0060530:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 18284458 | 18289321 | 18284458 | ID=Msa0060530;Name=Msa0060530 |
| chr1_2 | mRNA | 18284458 | 18289321 | 18284458 | ID=Msa0060530-mRNA-1;Parent=Msa0060530;Name=Msa0060530-mRNA-1;_AED=0.14;_eAED=0.14;_QI=115|1|1|1|0.87|0.77|9|214|185 |
| chr1_2 | exon | 18284458 | 18284515 | 18284458 | ID=Msa0060530-mRNA-1:exon:7103;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18284575 | 18284798 | 18284575 | ID=Msa0060530-mRNA-1:exon:7102;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18284877 | 18284956 | 18284877 | ID=Msa0060530-mRNA-1:exon:7101;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18285871 | 18285942 | 18285871 | ID=Msa0060530-mRNA-1:exon:7100;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18286028 | 18286068 | 18286028 | ID=Msa0060530-mRNA-1:exon:7099;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18286177 | 18286233 | 18286177 | ID=Msa0060530-mRNA-1:exon:7098;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18287386 | 18287439 | 18287386 | ID=Msa0060530-mRNA-1:exon:7097;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18288941 | 18289017 | 18288941 | ID=Msa0060530-mRNA-1:exon:7096;Parent=Msa0060530-mRNA-1 |
| chr1_2 | exon | 18289098 | 18289321 | 18289098 | ID=Msa0060530-mRNA-1:exon:7095;Parent=Msa0060530-mRNA-1 |
| chr1_2 | five_prime_UTR | 18289207 | 18289321 | 18289207 | ID=Msa0060530-mRNA-1:five_prime_utr;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18289098 | 18289206 | 18289098 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18288941 | 18289017 | 18288941 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18287386 | 18287439 | 18287386 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18286177 | 18286233 | 18286177 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18286028 | 18286068 | 18286028 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18285871 | 18285942 | 18285871 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18284877 | 18284956 | 18284877 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | CDS | 18284731 | 18284798 | 18284731 | ID=Msa0060530-mRNA-1:cds;Parent=Msa0060530-mRNA-1 |
| chr1_2 | three_prime_UTR | 18284575 | 18284730 | 18284575 | ID=Msa0060530-mRNA-1:three_prime_utr;Parent=Msa0060530-mRNA-1 |
| chr1_2 | three_prime_UTR | 18284458 | 18284515 | 18284458 | ID=Msa0060530-mRNA-1:three_prime_utr;Parent=Msa0060530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
