AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0414990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414990 MtrunA17_Chr3g0108631 96.875 224 6 1 1 223 1 224 1.30e-163 450
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0414990 AT5G58260.1 77.778 180 33 2 46 221 33 209 2.10e-101 293
Msa0414990 AT5G58260.2 78.030 132 22 2 48 175 35 163 3.06e-71 214

Find 87 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAACATTGGTTAGAAAT+TGG 0.199134 3_2:-61050418 None:intergenic
TTGTAGTCTCTTTGTTTCTT+TGG 0.209156 3_2:-61050511 None:intergenic
CATGAATCTCAGGCTCATTT+AGG 0.248243 3_2:+61051512 Msa0414990:intron
GTAACAGTGATAGAAGTAAA+AGG 0.281626 3_2:+61050666 Msa0414990:CDS
ATTCATCCTTATATATCTTT+TGG 0.282822 3_2:-61052669 None:intergenic
TTGGTTAGAAATTGGAAATT+AGG 0.298624 3_2:-61050410 None:intergenic
ACTTTGGTGAGAGTGGTTTC+AGG 0.312237 3_2:-61050902 None:intergenic
TGACTTCATTGGAGGAGATT+TGG 0.322097 3_2:+61050721 Msa0414990:CDS
GATTTGGTTAAATTTGATAT+TGG 0.335397 3_2:+61050737 Msa0414990:CDS
ACTGGTTTGAATGAACTAAA+AGG 0.339247 3_2:+61052870 Msa0414990:three_prime_UTR
GACCTTACTGCTCGTGGTCT+TGG 0.356166 3_2:+61050875 Msa0414990:CDS
TAACTTTCAATTAGAGATAG+TGG 0.365229 3_2:-61050306 None:intergenic
TATCTGCAAGTGCCTTGATT+TGG 0.379408 3_2:-61052636 None:intergenic
AGTACACCAAAAGATATATA+AGG 0.383201 3_2:+61052663 Msa0414990:three_prime_UTR
ACCACCAGTCCTTTAGCATT+TGG 0.385270 3_2:-61051599 None:intergenic
GGGAAATACCACCTTGCTAT+TGG 0.388797 3_2:-61051542 None:intergenic
TGTAGTAGTGGAATGGGATT+AGG 0.388862 3_2:+61050698 Msa0414990:CDS
GCTATGAAGCTGTTCCTTGT+TGG 0.392835 3_2:-61050593 None:intergenic
TAACAGTGATAGAAGTAAAA+GGG 0.435523 3_2:+61050667 Msa0414990:CDS
ATGGGATTAGGTGACTTCAT+TGG 0.442642 3_2:+61050710 Msa0414990:CDS
AAGCCACTCAACGAAATTGC+TGG 0.444434 3_2:+61052511 Msa0414990:CDS
GTGAAATGTAGTAGTGGAAT+GGG 0.444851 3_2:+61050692 Msa0414990:CDS
ATGTTAGCCTCTGCAAGCTT+AGG 0.446007 3_2:+61050536 Msa0414990:CDS
TAAAGTGATCGGTGAGAGAG+AGG 0.450226 3_2:-61050346 None:intergenic
GATGAATGATATTAGTTGTA+TGG 0.451236 3_2:-61050382 None:intergenic
TAACACTGTAAGATTGATGA+TGG 0.453017 3_2:+61050625 Msa0414990:CDS
TCATTGCTGAATGTGGAAAT+TGG 0.454528 3_2:+61052234 Msa0414990:CDS
TCAGCAATGACCCTCACATT+AGG 0.462929 3_2:-61052221 None:intergenic
TGCTGGACTGACCACTAGTC+AGG 0.471357 3_2:+61052528 Msa0414990:CDS
AAGCTTGAACTTCCAAATCA+AGG 0.472560 3_2:+61052624 Msa0414990:three_prime_UTR
TCCAATCTGTAATCAACCTC+TGG 0.475049 3_2:-61051566 None:intergenic
GCCTCTGCAAGCTTAGGTTG+TGG 0.477414 3_2:+61050542 Msa0414990:CDS
GTTGAAAGATAAAGAAACAT+TGG 0.490021 3_2:-61050429 None:intergenic
AAGATGAAAATATTCCTACT+TGG 0.493351 3_2:-61052596 None:intergenic
ACCAGAGGTTGATTACAGAT+TGG 0.496749 3_2:+61051565 Msa0414990:CDS
ACCAGTCCTTTAGCATTTGG+TGG 0.500265 3_2:-61051596 None:intergenic
AGTGAAATGTAGTAGTGGAA+TGG 0.507040 3_2:+61050691 Msa0414990:CDS
TGTTCCTTAGGTTCTCTCCA+AGG 0.526918 3_2:+61052160 Msa0414990:intron
AAGGAATTGTAGTTCAGCCT+TGG 0.529522 3_2:-61052177 None:intergenic
TTGCTCTGCTGCCAACACTA+AGG 0.531993 3_2:+61052198 Msa0414990:CDS
CCTCATGAAGGAGGGTATGA+AGG 0.537717 3_2:+61050809 Msa0414990:CDS
TTTCTTGACCTTACTGCTCG+TGG 0.540585 3_2:+61050869 Msa0414990:CDS
AGGGTGAACTTTGGTGAGAG+TGG 0.540770 3_2:-61050909 None:intergenic
AGTCCAGCAATTTCGTTGAG+TGG 0.542281 3_2:-61052514 None:intergenic
AGGACAAACAGGGTGAACTT+TGG 0.547356 3_2:-61050918 None:intergenic
GTACATATCACTCATGGTTG+TGG 0.558222 3_2:-61052719 None:intergenic
GAGAAATGAGATAAAGTGAT+CGG 0.565737 3_2:-61050357 None:intergenic
GAGTGATATGTACATTCTCA+AGG 0.567704 3_2:+61052729 Msa0414990:three_prime_UTR
GCATTACCACCAAATGCTAA+AGG 0.568190 3_2:+61051590 Msa0414990:CDS
GGATTAGGTGACTTCATTGG+AGG 0.569123 3_2:+61050713 Msa0414990:CDS
AATCTGTAATCAACCTCTGG+TGG 0.569201 3_2:-61051563 None:intergenic
GTTAGAAATTGGAAATTAGG+CGG 0.573232 3_2:-61050407 None:intergenic
ACCACCAAATGCTAAAGGAC+TGG 0.573788 3_2:+61051595 Msa0414990:CDS
CACCAAGACCACGAGCAGTA+AGG 0.576596 3_2:-61050877 None:intergenic
ATATATACTCCTCATGAAGG+AGG 0.584569 3_2:+61050800 Msa0414990:CDS
AGAAATTGGAAATTAGGCGG+AGG 0.586679 3_2:-61050404 None:intergenic
CTGTAAGATTGATGATGGGA+TGG 0.592923 3_2:+61050630 Msa0414990:CDS
TTATCGCGTCTTCAACGTCA+AGG 0.593630 3_2:+61050839 Msa0414990:CDS
GAGAATGTACATATCACTCA+TGG 0.594264 3_2:-61052725 None:intergenic
AGGGTAGTGAAATGTAGTAG+TGG 0.594466 3_2:+61050686 Msa0414990:CDS
TTAAATTTGATATTGGACGT+TGG 0.596364 3_2:+61050744 Msa0414990:CDS
AACACTAAGGCCTAATGTGA+GGG 0.598775 3_2:+61052211 Msa0414990:CDS
GCAATATATACTCCTCATGA+AGG 0.600567 3_2:+61050797 Msa0414990:CDS
GTGAGGGTCATTGCTGAATG+TGG 0.601568 3_2:+61052227 Msa0414990:CDS
CTATCAAGCTTCCTGACTAG+TGG 0.601785 3_2:-61052539 None:intergenic
CTCACATTAGGCCTTAGTGT+TGG 0.607755 3_2:-61052209 None:intergenic
TGCTGAATGTTAGAGCATGT+TGG 0.609400 3_2:-61050569 None:intergenic
TTAGTGTTGGCAGCAGAGCA+AGG 0.611894 3_2:-61052196 None:intergenic
CAACACTAAGGCCTAATGTG+AGG 0.616666 3_2:+61052210 Msa0414990:CDS
GAATGATATTAGTTGTATGG+TGG 0.617217 3_2:-61050379 None:intergenic
ATGCTAAAGGACTGGTGGTG+TGG 0.617377 3_2:+61051603 Msa0414990:CDS
ATCTGTAATCAACCTCTGGT+GGG 0.628296 3_2:-61051562 None:intergenic
TCTGCAAGCTTAGGTTGTGG+AGG 0.630890 3_2:+61050545 Msa0414990:CDS
AGATTGATGATGGGATGGAG+AGG 0.631584 3_2:+61050635 Msa0414990:CDS
CCTTCATACCCTCCTTCATG+AGG 0.634611 3_2:-61050809 None:intergenic
TAGGAAAGCAACCAATAGCA+AGG 0.634862 3_2:+61051531 Msa0414990:CDS
TATATACTCCTCATGAAGGA+GGG 0.636161 3_2:+61050801 Msa0414990:CDS
GGTGTGGATCATTGAAGCCA+AGG 0.636653 3_2:+61051619 Msa0414990:CDS
AAAGTGATCGGTGAGAGAGA+GGG 0.643337 3_2:-61050345 None:intergenic
CTAACATTCAGCAACCAACA+AGG 0.653000 3_2:+61050579 Msa0414990:CDS
TCCACAACCTAAGCTTGCAG+AGG 0.654833 3_2:-61050543 None:intergenic
AAGGTGGTATTTCCCACCAG+AGG 0.661184 3_2:+61051550 Msa0414990:CDS
ACCAAATGCTAAAGGACTGG+TGG 0.663339 3_2:+61051598 Msa0414990:CDS
AACACTGTAAGATTGATGAT+GGG 0.665364 3_2:+61050626 Msa0414990:CDS
GATAGTGGCATATCATCATG+TGG 0.679678 3_2:-61050291 None:intergenic
TGATCAGGAGAAAGTTTACG+TGG 0.681866 3_2:+61052488 Msa0414990:intron
GAAAGCAACCAATAGCAAGG+TGG 0.723318 3_2:+61051534 Msa0414990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTTTTATGAAAATAAA+AGG + chr3_2:61051848-61051867 Msa0414990:intron 10.0%
!!! TTGTTTTTATGAAAATAAAA+GGG + chr3_2:61051849-61051868 Msa0414990:intron 10.0%
!! AAAAACATTATTAGAAAATT+TGG - chr3_2:61052267-61052286 None:intergenic 10.0%
!! AATTATTTGTATTATATCTC+TGG + chr3_2:61051784-61051803 Msa0414990:intron 15.0%
!! ATTATTTGTATTATATCTCT+GGG + chr3_2:61051785-61051804 Msa0414990:intron 15.0%
!! TGAATATACATTAATTTATC+TGG + chr3_2:61052105-61052124 Msa0414990:intron 15.0%
!!! GATTTGGTTAAATTTGATAT+TGG + chr3_2:61050737-61050756 Msa0414990:CDS 20.0%
!!! CTCCTTTAAAATTTCTTTTT+CGG + chr3_2:61051209-61051228 Msa0414990:intron 20.0%
!! ATAATGATAGTTATCAATCA+TGG - chr3_2:61051239-61051258 None:intergenic 20.0%
!! AAACAATTTCATCAGAAAAT+AGG - chr3_2:61051827-61051846 None:intergenic 20.0%
!!! TTTTTATGAAAATAAAAGGG+AGG + chr3_2:61051852-61051871 Msa0414990:intron 20.0%
!! TCATGGAAAGTTATAAATAA+AGG + chr3_2:61051930-61051949 Msa0414990:intron 20.0%
!!! ATTCATCCTTATATATCTTT+TGG - chr3_2:61052672-61052691 None:intergenic 20.0%
! TAACTTTCAATTAGAGATAG+TGG - chr3_2:61050309-61050328 None:intergenic 25.0%
! GATGAATGATATTAGTTGTA+TGG - chr3_2:61050385-61050404 None:intergenic 25.0%
! TTGGTTAGAAATTGGAAATT+AGG - chr3_2:61050413-61050432 None:intergenic 25.0%
!! AAGAAACATTGGTTAGAAAT+TGG - chr3_2:61050421-61050440 None:intergenic 25.0%
! GTTGAAAGATAAAGAAACAT+TGG - chr3_2:61050432-61050451 None:intergenic 25.0%
! TAACAGTGATAGAAGTAAAA+GGG + chr3_2:61050667-61050686 Msa0414990:CDS 25.0%
! TTAAATTTGATATTGGACGT+TGG + chr3_2:61050744-61050763 Msa0414990:CDS 25.0%
! GAAAGAAAAAAAAAACTCAC+AGG - chr3_2:61050941-61050960 None:intergenic 25.0%
!!! AAGCTTTGAAAATTCTGTTT+AGG + chr3_2:61050968-61050987 Msa0414990:intron 25.0%
!!! AGATACTCGAATCTATTTTT+AGG - chr3_2:61051092-61051111 None:intergenic 25.0%
! TCTTATAAATGATACTCTTG+TGG + chr3_2:61051109-61051128 Msa0414990:intron 25.0%
! CTTATAAATGATACTCTTGT+GGG + chr3_2:61051110-61051129 Msa0414990:intron 25.0%
!! AGCCGAAAAAGAAATTTTAA+AGG - chr3_2:61051214-61051233 None:intergenic 25.0%
!!! AAGCTTTTAATTTGAAGTGT+TGG - chr3_2:61051276-61051295 None:intergenic 25.0%
!!! ATTCTGTTTTAAGTATGTGA+GGG - chr3_2:61051681-61051700 None:intergenic 25.0%
!!! AAATGCTTTTAGGAAAAGTA+TGG + chr3_2:61051759-61051778 Msa0414990:intron 25.0%
! AATTTCATCAGAAAATAGGT+GGG - chr3_2:61051823-61051842 None:intergenic 25.0%
! GAGATTCTAATATCATATCA+TGG + chr3_2:61051913-61051932 Msa0414990:intron 25.0%
! ATTGCAACAAATTACAAATG+AGG - chr3_2:61051985-61052004 None:intergenic 25.0%
! TATATTCACCTAACAACAAT+CGG - chr3_2:61052093-61052112 None:intergenic 25.0%
! AATTTCCAACTTTATATGCA+AGG + chr3_2:61052391-61052410 Msa0414990:intron 25.0%
! AAGATGAAAATATTCCTACT+TGG - chr3_2:61052599-61052618 None:intergenic 25.0%
! AGTACACCAAAAGATATATA+AGG + chr3_2:61052663-61052682 Msa0414990:three_prime_UTR 25.0%
! CTAGATGAGAAAAAAAAAAC+TGG + chr3_2:61052852-61052871 Msa0414990:three_prime_UTR 25.0%
GAGAAATGAGATAAAGTGAT+CGG - chr3_2:61050360-61050379 None:intergenic 30.0%
GAATGATATTAGTTGTATGG+TGG - chr3_2:61050382-61050401 None:intergenic 30.0%
GTTAGAAATTGGAAATTAGG+CGG - chr3_2:61050410-61050429 None:intergenic 30.0%
! TTGTAGTCTCTTTGTTTCTT+TGG - chr3_2:61050514-61050533 None:intergenic 30.0%
TAACACTGTAAGATTGATGA+TGG + chr3_2:61050625-61050644 Msa0414990:CDS 30.0%
! AACACTGTAAGATTGATGAT+GGG + chr3_2:61050626-61050645 Msa0414990:CDS 30.0%
GTAACAGTGATAGAAGTAAA+AGG + chr3_2:61050666-61050685 Msa0414990:CDS 30.0%
TTTATGAACGAAATTGACCA+AGG + chr3_2:61051037-61051056 Msa0414990:intron 30.0%
TTATGAACGAAATTGACCAA+GGG + chr3_2:61051038-61051057 Msa0414990:intron 30.0%
! AGAATTTTGTCATGAATCTC+AGG + chr3_2:61051502-61051521 Msa0414990:intron 30.0%
!! TTCTGTTTTAAGTATGTGAG+GGG - chr3_2:61051680-61051699 None:intergenic 30.0%
!! CATTCTGTTTTAAGTATGTG+AGG - chr3_2:61051682-61051701 None:intergenic 30.0%
!! CTAAAAGCATTTGATTGAGA+TGG - chr3_2:61051751-61051770 None:intergenic 30.0%
! CATCTCAATCAAATGCTTTT+AGG + chr3_2:61051749-61051768 Msa0414990:intron 30.0%
CAATTTCATCAGAAAATAGG+TGG - chr3_2:61051824-61051843 None:intergenic 30.0%
TTTATATGCAAGGTCTAGTT+TGG + chr3_2:61052401-61052420 Msa0414990:intron 30.0%
AACATGAGAATGAGATTTCT+TGG - chr3_2:61052456-61052475 None:intergenic 30.0%
GTTTGTTTATGTGAATGATC+AGG + chr3_2:61052473-61052492 Msa0414990:intron 30.0%
!! TATTCCTACTTGGTTTTTGA+TGG - chr3_2:61052589-61052608 None:intergenic 30.0%
!! CTCAAGGTTTAATTTTGTCA+TGG + chr3_2:61052745-61052764 Msa0414990:three_prime_UTR 30.0%
!! ACTGGTTTGAATGAACTAAA+AGG + chr3_2:61052870-61052889 Msa0414990:three_prime_UTR 30.0%
! AGTGAAATGTAGTAGTGGAA+TGG + chr3_2:61050691-61050710 Msa0414990:CDS 35.0%
! GTGAAATGTAGTAGTGGAAT+GGG + chr3_2:61050692-61050711 Msa0414990:CDS 35.0%
GCAATATATACTCCTCATGA+AGG + chr3_2:61050797-61050816 Msa0414990:CDS 35.0%
ATATATACTCCTCATGAAGG+AGG + chr3_2:61050800-61050819 Msa0414990:CDS 35.0%
TATATACTCCTCATGAAGGA+GGG + chr3_2:61050801-61050820 Msa0414990:CDS 35.0%
AAAAACTCACAGGACAAACA+GGG - chr3_2:61050931-61050950 None:intergenic 35.0%
AAAAAACTCACAGGACAAAC+AGG - chr3_2:61050932-61050951 None:intergenic 35.0%
CAAGCTATGCATTAGAATCA+TGG - chr3_2:61050998-61051017 None:intergenic 35.0%
ACCAAGGGAAAACATATTTG+AGG + chr3_2:61051053-61051072 Msa0414990:intron 35.0%
CCAAGGGAAAACATATTTGA+GGG + chr3_2:61051054-61051073 Msa0414990:intron 35.0%
AAAGGAGCAAACAACTACTT+TGG - chr3_2:61051196-61051215 None:intergenic 35.0%
AAAATAAAAGGGAGGTGACA+AGG + chr3_2:61051860-61051879 Msa0414990:intron 35.0%
CTAACAACAATCGGATTTCT+TGG - chr3_2:61052084-61052103 None:intergenic 35.0%
! CAAGAAATCCGATTGTTGTT+AGG + chr3_2:61052082-61052101 Msa0414990:intron 35.0%
AATTTATCTGGTCAAATGCG+CGG + chr3_2:61052117-61052136 Msa0414990:intron 35.0%
TCATTGCTGAATGTGGAAAT+TGG + chr3_2:61052234-61052253 Msa0414990:CDS 35.0%
CTAGACCTTGCATATAAAGT+TGG - chr3_2:61052399-61052418 None:intergenic 35.0%
ATGAGAATGAGATTTCTTGG+TGG - chr3_2:61052453-61052472 None:intergenic 35.0%
AAGCTTGAACTTCCAAATCA+AGG + chr3_2:61052624-61052643 Msa0414990:three_prime_UTR 35.0%
GAGAATGTACATATCACTCA+TGG - chr3_2:61052728-61052747 None:intergenic 35.0%
GAGTGATATGTACATTCTCA+AGG + chr3_2:61052729-61052748 Msa0414990:three_prime_UTR 35.0%
! GATAGTGGCATATCATCATG+TGG - chr3_2:61050294-61050313 None:intergenic 40.0%
AGAAATTGGAAATTAGGCGG+AGG - chr3_2:61050407-61050426 None:intergenic 40.0%
TGCTGAATGTTAGAGCATGT+TGG - chr3_2:61050572-61050591 None:intergenic 40.0%
CTAACATTCAGCAACCAACA+AGG + chr3_2:61050579-61050598 Msa0414990:CDS 40.0%
!! CTGTAAGATTGATGATGGGA+TGG + chr3_2:61050630-61050649 Msa0414990:CDS 40.0%
AGGGTAGTGAAATGTAGTAG+TGG + chr3_2:61050686-61050705 Msa0414990:CDS 40.0%
! TGTAGTAGTGGAATGGGATT+AGG + chr3_2:61050698-61050717 Msa0414990:CDS 40.0%
ATGGGATTAGGTGACTTCAT+TGG + chr3_2:61050710-61050729 Msa0414990:CDS 40.0%
TGACTTCATTGGAGGAGATT+TGG + chr3_2:61050721-61050740 Msa0414990:CDS 40.0%
! CCCTCAAATATGTTTTCCCT+TGG - chr3_2:61051057-61051076 None:intergenic 40.0%
!! CTTTGGTTCTTGAATGTGTG+AGG - chr3_2:61051179-61051198 None:intergenic 40.0%
CTTCATAGATTATGTCGCAC+TGG + chr3_2:61051447-61051466 Msa0414990:intron 40.0%
CATGAATCTCAGGCTCATTT+AGG + chr3_2:61051512-61051531 Msa0414990:intron 40.0%
TAGGAAAGCAACCAATAGCA+AGG + chr3_2:61051531-61051550 Msa0414990:CDS 40.0%
ATCTGTAATCAACCTCTGGT+GGG - chr3_2:61051565-61051584 None:intergenic 40.0%
AATCTGTAATCAACCTCTGG+TGG - chr3_2:61051566-61051585 None:intergenic 40.0%
! ACCAGAGGTTGATTACAGAT+TGG + chr3_2:61051565-61051584 Msa0414990:CDS 40.0%
TCCAATCTGTAATCAACCTC+TGG - chr3_2:61051569-61051588 None:intergenic 40.0%
GCATTACCACCAAATGCTAA+AGG + chr3_2:61051590-61051609 Msa0414990:CDS 40.0%
GTAAAGCATAATCCACACCT+TGG - chr3_2:61051639-61051658 None:intergenic 40.0%
TTGCAGTTAAGCTGTGATAC+TGG - chr3_2:61052020-61052039 None:intergenic 40.0%
ACAACAATCGGATTTCTTGG+TGG - chr3_2:61052081-61052100 None:intergenic 40.0%
! GCGGTACTAAAATGTTGCTT+TGG + chr3_2:61052136-61052155 Msa0414990:intron 40.0%
AAGGAATTGTAGTTCAGCCT+TGG - chr3_2:61052180-61052199 None:intergenic 40.0%
AACACTAAGGCCTAATGTGA+GGG + chr3_2:61052211-61052230 Msa0414990:CDS 40.0%
TGCTGAATGTGGAAATTGGT+AGG + chr3_2:61052238-61052257 Msa0414990:intron 40.0%
TGTTGCAAAACTTGTGCTTG+AGG + chr3_2:61052347-61052366 Msa0414990:intron 40.0%
TGATCAGGAGAAAGTTTACG+TGG + chr3_2:61052488-61052507 Msa0414990:intron 40.0%
!! CCTACTTGGTTTTTGATGGA+TGG - chr3_2:61052585-61052604 None:intergenic 40.0%
CCATCCATCAAAAACCAAGT+AGG + chr3_2:61052582-61052601 Msa0414990:three_prime_UTR 40.0%
TATCTGCAAGTGCCTTGATT+TGG - chr3_2:61052639-61052658 None:intergenic 40.0%
GTACATATCACTCATGGTTG+TGG - chr3_2:61052722-61052741 None:intergenic 40.0%
AAAGTGATCGGTGAGAGAGA+GGG - chr3_2:61050348-61050367 None:intergenic 45.0%
TAAAGTGATCGGTGAGAGAG+AGG - chr3_2:61050349-61050368 None:intergenic 45.0%
! ATGTTAGCCTCTGCAAGCTT+AGG + chr3_2:61050536-61050555 Msa0414990:CDS 45.0%
GCTATGAAGCTGTTCCTTGT+TGG - chr3_2:61050596-61050615 None:intergenic 45.0%
!! AGATTGATGATGGGATGGAG+AGG + chr3_2:61050635-61050654 Msa0414990:CDS 45.0%
GGATTAGGTGACTTCATTGG+AGG + chr3_2:61050713-61050732 Msa0414990:CDS 45.0%
TTATCGCGTCTTCAACGTCA+AGG + chr3_2:61050839-61050858 Msa0414990:CDS 45.0%
TTTCTTGACCTTACTGCTCG+TGG + chr3_2:61050869-61050888 Msa0414990:CDS 45.0%
ACTTTGGTGAGAGTGGTTTC+AGG - chr3_2:61050905-61050924 None:intergenic 45.0%
AGGACAAACAGGGTGAACTT+TGG - chr3_2:61050921-61050940 None:intergenic 45.0%
CCACATGATCGTTGTACTGT+TGG - chr3_2:61051331-61051350 None:intergenic 45.0%
CCAACAGTACAACGATCATG+TGG + chr3_2:61051328-61051347 Msa0414990:intron 45.0%
AGTACAACGATCATGTGGTG+TGG + chr3_2:61051333-61051352 Msa0414990:intron 45.0%
GAAAGCAACCAATAGCAAGG+TGG + chr3_2:61051534-61051553 Msa0414990:CDS 45.0%
! GGGAAATACCACCTTGCTAT+TGG - chr3_2:61051545-61051564 None:intergenic 45.0%
ACCACCAAATGCTAAAGGAC+TGG + chr3_2:61051595-61051614 Msa0414990:CDS 45.0%
ACCAGTCCTTTAGCATTTGG+TGG - chr3_2:61051599-61051618 None:intergenic 45.0%
ACCAAATGCTAAAGGACTGG+TGG + chr3_2:61051598-61051617 Msa0414990:CDS 45.0%
ACCACCAGTCCTTTAGCATT+TGG - chr3_2:61051602-61051621 None:intergenic 45.0%
! GATTTCTTGGTGGTTTCGTC+AGG - chr3_2:61052071-61052090 None:intergenic 45.0%
!! TGTTGCTTTGGCTGTTCCTT+AGG + chr3_2:61052148-61052167 Msa0414990:intron 45.0%
TGTTCCTTAGGTTCTCTCCA+AGG + chr3_2:61052160-61052179 Msa0414990:intron 45.0%
CTCACATTAGGCCTTAGTGT+TGG - chr3_2:61052212-61052231 None:intergenic 45.0%
CAACACTAAGGCCTAATGTG+AGG + chr3_2:61052210-61052229 Msa0414990:CDS 45.0%
TCAGCAATGACCCTCACATT+AGG - chr3_2:61052224-61052243 None:intergenic 45.0%
AAGCCACTCAACGAAATTGC+TGG + chr3_2:61052511-61052530 Msa0414990:CDS 45.0%
AGTCCAGCAATTTCGTTGAG+TGG - chr3_2:61052517-61052536 None:intergenic 45.0%
CTATCAAGCTTCCTGACTAG+TGG - chr3_2:61052542-61052561 None:intergenic 45.0%
TCCACAACCTAAGCTTGCAG+AGG - chr3_2:61050546-61050565 None:intergenic 50.0%
! TCTGCAAGCTTAGGTTGTGG+AGG + chr3_2:61050545-61050564 Msa0414990:CDS 50.0%
CCTTCATACCCTCCTTCATG+AGG - chr3_2:61050812-61050831 None:intergenic 50.0%
! CCTCATGAAGGAGGGTATGA+AGG + chr3_2:61050809-61050828 Msa0414990:CDS 50.0%
AGGGTGAACTTTGGTGAGAG+TGG - chr3_2:61050912-61050931 None:intergenic 50.0%
AAGGTGGTATTTCCCACCAG+AGG + chr3_2:61051550-61051569 Msa0414990:CDS 50.0%
! ATGCTAAAGGACTGGTGGTG+TGG + chr3_2:61051603-61051622 Msa0414990:CDS 50.0%
GGTGTGGATCATTGAAGCCA+AGG + chr3_2:61051619-61051638 Msa0414990:CDS 50.0%
GGATCATTGAAGCCAAGGTG+TGG + chr3_2:61051624-61051643 Msa0414990:intron 50.0%
TCAGCCTTGGAGAGAACCTA+AGG - chr3_2:61052167-61052186 None:intergenic 50.0%
!! TTAGTGTTGGCAGCAGAGCA+AGG - chr3_2:61052199-61052218 None:intergenic 50.0%
TTGCTCTGCTGCCAACACTA+AGG + chr3_2:61052198-61052217 Msa0414990:CDS 50.0%
GTGAGGGTCATTGCTGAATG+TGG + chr3_2:61052227-61052246 Msa0414990:CDS 50.0%
! GCCTCTGCAAGCTTAGGTTG+TGG + chr3_2:61050542-61050561 Msa0414990:CDS 55.0%
GACCTTACTGCTCGTGGTCT+TGG + chr3_2:61050875-61050894 Msa0414990:CDS 55.0%
CACCAAGACCACGAGCAGTA+AGG - chr3_2:61050880-61050899 None:intergenic 55.0%
TGCTGGACTGACCACTAGTC+AGG + chr3_2:61052528-61052547 Msa0414990:CDS 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 61050270 61052910 61050270 ID=Msa0414990;Name=Msa0414990
chr3_2 mRNA 61050270 61052910 61050270 ID=Msa0414990-mRNA-1;Parent=Msa0414990;Name=Msa0414990-mRNA-1;_AED=0.02;_eAED=0.02;_QI=266|1|1|1|1|1|4|352|223
chr3_2 exon 61050270 61050940 61050270 ID=Msa0414990-mRNA-1:exon:12817;Parent=Msa0414990-mRNA-1
chr3_2 exon 61051524 61051640 61051524 ID=Msa0414990-mRNA-1:exon:12818;Parent=Msa0414990-mRNA-1
chr3_2 exon 61052170 61052255 61052170 ID=Msa0414990-mRNA-1:exon:12819;Parent=Msa0414990-mRNA-1
chr3_2 exon 61052495 61052910 61052495 ID=Msa0414990-mRNA-1:exon:12820;Parent=Msa0414990-mRNA-1
chr3_2 five_prime_UTR 61050270 61050535 61050270 ID=Msa0414990-mRNA-1:five_prime_utr;Parent=Msa0414990-mRNA-1
chr3_2 CDS 61050536 61050940 61050536 ID=Msa0414990-mRNA-1:cds;Parent=Msa0414990-mRNA-1
chr3_2 CDS 61051524 61051640 61051524 ID=Msa0414990-mRNA-1:cds;Parent=Msa0414990-mRNA-1
chr3_2 CDS 61052170 61052255 61052170 ID=Msa0414990-mRNA-1:cds;Parent=Msa0414990-mRNA-1
chr3_2 CDS 61052495 61052558 61052495 ID=Msa0414990-mRNA-1:cds;Parent=Msa0414990-mRNA-1
chr3_2 three_prime_UTR 61052559 61052910 61052559 ID=Msa0414990-mRNA-1:three_prime_utr;Parent=Msa0414990-mRNA-1
Gene Sequence

>Msa0414990

ATGTTAGCCTCTGCAAGCTTAGGTTGTGGAGGACCAACATGCTCTAACATTCAGCAACCAACAAGGAACAGCTTCATAGCTGAAAATCATAACACTGTAAGATTGATGATGGGATGGAGAGGAAAACAATGTAACAGTGATAGAAGTAAAAGGGTAGTGAAATGTAGTAGTGGAATGGGATTAGGTGACTTCATTGGAGGAGATTTGGTTAAATTTGATATTGGACGTTGGCTTTCAGATGTTGAAGAACATAAAGCACTTGCAATATATACTCCTCATGAAGGAGGGTATGAAGGACGTTACTTATCGCGTCTTCAACGTCAAGGTTACTATTTTCTTGACCTTACTGCTCGTGGTCTTGGTGATCCTGAAACCACTCTCACCAAAGTTCACCCTGTTTGTCCTGCTCATTTAGGAAAGCAACCAATAGCAAGGTGGTATTTCCCACCAGAGGTTGATTACAGATTGGAAGCATTACCACCAAATGCTAAAGGACTGGTGGTGTGGATCATTGAAGCCAAGGTTCTCTCCAAGGCTGAACTACAATTCCTTGCTCTGCTGCCAACACTAAGGCCTAATGTGAGGGTCATTGCTGAATGTGGAAATTGGAGAAAGTTTACGTGGAAGCCACTCAACGAAATTGCTGGACTGACCACTAGTCAGGAAGCTTGA

Protein sequence

>Msa0414990

MLASASLGCGGPTCSNIQQPTRNSFIAENHNTVRLMMGWRGKQCNSDRSKRVVKCSSGMGLGDFIGGDLVKFDIGRWLSDVEEHKALAIYTPHEGGYEGRYLSRLQRQGYYFLDLTARGLGDPETTLTKVHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQFLALLPTLRPNVRVIAECGNWRKFTWKPLNEIAGLTTSQEA*