AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1116010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116010 MtrunA17_Chr7g0258361 97.863 234 5 0 1 234 1 234 2.95e-174 478
Msa1116010 MtrunA17_Chr4g0006411 34.177 158 102 2 39 194 50 207 5.27e-25 98.2
Msa1116010 MtrunA17_Chr3g0116671 26.596 188 134 1 17 200 52 239 7.34e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1116010 AT2G42220.1 65.179 224 74 1 4 227 10 229 2.63e-108 311
Msa1116010 AT3G08920.1 36.478 159 99 2 39 195 37 195 5.23e-29 108
Msa1116010 AT4G24750.1 29.747 158 109 2 44 200 85 241 6.09e-17 78.2

Find 67 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATGCATGCTACATTT+TGG 0.221380 7_3:+63538851 None:intergenic
CTGTAGGTACAATCTTATTA+AGG 0.285743 7_3:-63540109 Msa1116010:intron
CTTCAAACACCGTACGTTGC+TGG 0.340142 7_3:-63538179 Msa1116010:three_prime_UTR
ACAATCAAGAGTTTAGTTTC+AGG 0.345374 7_3:+63539993 None:intergenic
TAAACTCTTGATTGTTTGTC+AGG 0.363215 7_3:-63539985 Msa1116010:CDS
TTCACGGATTGTACGAAATC+AGG 0.363278 7_3:+63540029 None:intergenic
GGAAAGAGATAATGTTAGTA+TGG 0.376907 7_3:-63538348 Msa1116010:three_prime_UTR
AAGGAACTTGTAAAAGTAGA+TGG 0.379059 7_3:-63540581 Msa1116010:CDS
CTGATCCAACTGGTCCCTTC+AGG 0.389584 7_3:-63538490 Msa1116010:CDS
ATCAGCTTCTCTGCTTGATC+AGG 0.390870 7_3:+63538508 None:intergenic
CACAATGCAAGGAGCATGCC+AGG 0.391332 7_3:-63540683 Msa1116010:CDS
GACATCTTAAACATTTAAAT+CGG 0.392368 7_3:+63538218 None:intergenic
GATTGTACGAAATCAGGATT+TGG 0.406296 7_3:+63540035 None:intergenic
GAATGCTGGCAAAGCTGGTT+TGG 0.410102 7_3:-63538681 Msa1116010:CDS
TTCAAACACCGTACGTTGCT+GGG 0.424507 7_3:-63538178 Msa1116010:three_prime_UTR
TTGCAGAATGCTGGCAAAGC+TGG 0.432034 7_3:-63538686 Msa1116010:CDS
TGTTGATGTGAATGAGGTTA+TGG 0.432320 7_3:-63538374 Msa1116010:three_prime_UTR
AAAGACGAAGACTATGTAAC+TGG 0.434272 7_3:+63538115 None:intergenic
TGCAGCAGCAAATAAGTTAG+AGG 0.441375 7_3:-63538884 Msa1116010:CDS
CTCTTGATTGTTTGTCAGGA+AGG 0.443131 7_3:-63539981 Msa1116010:CDS
CATTGAGATACTACCTTCCC+TGG 0.448332 7_3:+63540665 None:intergenic
GTAGGGACATTTGAATCTGT+TGG 0.448414 7_3:-63538719 Msa1116010:intron
AATGTAGCATGCATAACATC+TGG 0.456689 7_3:-63538847 Msa1116010:CDS
AGGCTGTATTTGACTCTTCA+CGG 0.462274 7_3:+63540013 None:intergenic
TCGACGGAGTTGCAGAATGC+TGG 0.475813 7_3:-63538695 Msa1116010:CDS
ACACACATTCTCACAATGGC+AGG 0.476693 7_3:-63540909 Msa1116010:exon
GCAAATAAGTTAGAGGAGGC+TGG 0.483938 7_3:-63538877 Msa1116010:CDS
AGCAGAGAAGCTGATCCAAC+TGG 0.489566 7_3:-63538500 Msa1116010:CDS
TGGTTCTTCAATACGGTACA+TGG 0.489773 7_3:+63538135 None:intergenic
AGACTAAAAGTTCCATCGAT+TGG 0.490628 7_3:-63538464 Msa1116010:three_prime_UTR
TAATGTTAGTATGGCTATCA+TGG 0.501704 7_3:-63538339 Msa1116010:three_prime_UTR
TCAGCAACTTAGGGAGATGT+TGG 0.512330 7_3:-63540721 Msa1116010:intron
TCAGGATTTGGCCTAGTGAA+TGG 0.518571 7_3:+63540047 None:intergenic
GATAAGGAGTTACCAGGAGG+TGG 0.526098 7_3:+63540875 None:intergenic
GAAAATACAGACAATGATCC+TGG 0.526626 7_3:-63540476 Msa1116010:intron
CTCTGCTTGATCAGGAAAGA+AGG 0.530924 7_3:+63538516 None:intergenic
AAGTAAATTACCACCGCAGT+GGG 0.535368 7_3:+63538297 None:intergenic
GGACTGCTTTCTCCACCTCC+TGG 0.538119 7_3:-63540887 Msa1116010:intron
CAACTTAGGGAGATGTTGGT+TGG 0.543322 7_3:-63540717 Msa1116010:CDS
TTGTTTGTCAGGAAGGATTG+AGG 0.546160 7_3:-63539974 Msa1116010:intron
GAAATGTGAGACTAGAATTG+AGG 0.547284 7_3:-63538409 Msa1116010:three_prime_UTR
ATGTAACTGGTTCTTCAATA+CGG 0.551827 7_3:+63538128 None:intergenic
ATTTGAATCTGTTGGCTCGA+CGG 0.558341 7_3:-63538711 Msa1116010:CDS
CTTAGCCTGAAGGGACCAGT+TGG 0.559659 7_3:+63538485 None:intergenic
TCTTCGGGATACCATTCACT+AGG 0.560518 7_3:-63540058 Msa1116010:CDS
TGCAAGGAGCATGCCAGGGA+AGG 0.562582 7_3:-63540678 Msa1116010:CDS
TGTAACAGCTGATGATGCTA+AGG 0.563299 7_3:-63540600 Msa1116010:CDS
ATGTAACATGCATTATGTGA+GGG 0.566321 7_3:+63538433 None:intergenic
GCTGGTTTGGTGCAAATCCA+AGG 0.574370 7_3:-63538668 Msa1116010:CDS
TATCTCAATGTAAAATGAGA+AGG 0.581344 7_3:-63540652 Msa1116010:CDS
AAAACATGTTGATGTGAATG+AGG 0.582219 7_3:-63538380 Msa1116010:three_prime_UTR
TATGTAACATGCATTATGTG+AGG 0.589318 7_3:+63538432 None:intergenic
CAAATTGTCCCAGCAACGTA+CGG 0.589694 7_3:+63538170 None:intergenic
AGGGGAAAACAACCAATCGA+TGG 0.613928 7_3:+63538452 None:intergenic
GATATAATGTTCTTGATGTG+AGG 0.619269 7_3:-63540559 Msa1116010:CDS
GGACTTCAAACTGTGAAACC+AGG 0.620690 7_3:-63538826 Msa1116010:intron
AGCAGCAAATAAGTTAGAGG+AGG 0.629242 7_3:-63538881 Msa1116010:CDS
ATGTGAATGAGGTTATGGAA+TGG 0.634776 7_3:-63538369 Msa1116010:three_prime_UTR
ATATAATGTTCTTGATGTGA+GGG 0.640539 7_3:-63540558 Msa1116010:CDS
ACAATGCAAGGAGCATGCCA+GGG 0.648008 7_3:-63540682 Msa1116010:CDS
TGTAACATGCATTATGTGAG+GGG 0.651984 7_3:+63538434 None:intergenic
CACACATTCTCACAATGGCA+GGG 0.653331 7_3:-63540908 Msa1116010:exon
AAAGTAAATTACCACCGCAG+TGG 0.672430 7_3:+63538296 None:intergenic
GATTGTCTACCCCACTGCGG+TGG 0.682203 7_3:-63538307 Msa1116010:three_prime_UTR
ACAAACACACATTCTCACAA+TGG 0.693697 7_3:-63540913 Msa1116010:exon
AGTAAATTACCACCGCAGTG+GGG 0.773412 7_3:+63538298 None:intergenic
CTAGATTGTCTACCCCACTG+CGG 0.792117 7_3:-63538310 Msa1116010:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539837-63539856 None:intergenic 100.0%
!! TATTATTCTTAAAAGGTAAA+CGG + chr7_3:63540254-63540273 None:intergenic 15.0%
!! GAAAATTCAAAGTTAAGATA+AGG + chr7_3:63538156-63538175 None:intergenic 20.0%
!!! ATAGTATAAATAGTTTTGGA+AGG + chr7_3:63538574-63538593 None:intergenic 20.0%
!!! ATGCATAGTATAAATAGTTT+TGG + chr7_3:63538578-63538597 None:intergenic 20.0%
!!! CATTTTAGTTTTGAAATTGT+AGG - chr7_3:63538622-63538641 Msa1116010:intron 20.0%
!!! CAAACATTTTGAAATAATTC+TGG - chr7_3:63538673-63538692 Msa1116010:CDS 20.0%
!! ATATAATTAGCAATCAAAGA+GGG + chr7_3:63539082-63539101 None:intergenic 20.0%
!! TATATAATTAGCAATCAAAG+AGG + chr7_3:63539083-63539102 None:intergenic 20.0%
!!! TATTTTCTTCATTCGATAAA+CGG + chr7_3:63539530-63539549 None:intergenic 20.0%
!!! AATAATAAATGTCCTTTTGT+GGG + chr7_3:63539865-63539884 None:intergenic 20.0%
!!! AAATAATAAATGTCCTTTTG+TGG + chr7_3:63539866-63539885 None:intergenic 20.0%
!! TTAAAATTTATCCATTCTGT+AGG - chr7_3:63540275-63540294 Msa1116010:intron 20.0%
!! TAAAATTTATCCATTCTGTA+GGG - chr7_3:63540276-63540295 Msa1116010:intron 20.0%
!!! TTCTGTTTTATGAAATTTTC+AGG - chr7_3:63540456-63540475 Msa1116010:intron 20.0%
!! GACATCTTAAACATTTAAAT+CGG + chr7_3:63540797-63540816 None:intergenic 20.0%
! AACATGATTATGAGTGATTA+AGG - chr7_3:63538260-63538279 Msa1116010:three_prime_UTR 25.0%
! TATCTCAATGTAAAATGAGA+AGG - chr7_3:63538360-63538379 Msa1116010:three_prime_UTR 25.0%
! ATATAATGTTCTTGATGTGA+GGG - chr7_3:63538454-63538473 Msa1116010:three_prime_UTR 25.0%
!! CTGTATTTTCAACAAAAAGA+GGG + chr7_3:63538526-63538545 None:intergenic 25.0%
!! TCTGTATTTTCAACAAAAAG+AGG + chr7_3:63538527-63538546 None:intergenic 25.0%
! TTTAGATTGTACATAATGAC+TGG + chr7_3:63539213-63539232 None:intergenic 25.0%
! AAAAAGAGAAACATAGATGA+AGG - chr7_3:63539231-63539250 Msa1116010:intron 25.0%
! AATTCTCAGTATTAGGTATT+AGG + chr7_3:63539267-63539286 None:intergenic 25.0%
! AAATAGGTAAAACACATAGT+AGG - chr7_3:63539365-63539384 Msa1116010:intron 25.0%
! AAGCCAATTGTTATAATACA+AGG - chr7_3:63539549-63539568 Msa1116010:intron 25.0%
! TCTCCTTGTATTATAACAAT+TGG + chr7_3:63539555-63539574 None:intergenic 25.0%
! GTCATGTGTAAAAAAAAACA+GGG + chr7_3:63539793-63539812 None:intergenic 25.0%
! TGTCATGTGTAAAAAAAAAC+AGG + chr7_3:63539794-63539813 None:intergenic 25.0%
!! ATAATAAATGTCCTTTTGTG+GGG + chr7_3:63539864-63539883 None:intergenic 25.0%
!! TTCAAGTTATGCAAATTCAT+AGG + chr7_3:63540045-63540064 None:intergenic 25.0%
!! TAATTTTTCCTTCTTTGTCA+AGG - chr7_3:63540100-63540119 Msa1116010:CDS 25.0%
! AATCAATGATTAACTAAACC+TGG + chr7_3:63540207-63540226 None:intergenic 25.0%
!!! AAAGACATTGTTTTGCTTAA+TGG + chr7_3:63540742-63540761 None:intergenic 25.0%
TAGTAAAAACTCACAATGCA+AGG - chr7_3:63538318-63538337 Msa1116010:three_prime_UTR 30.0%
AAGGAACTTGTAAAAGTAGA+TGG - chr7_3:63538431-63538450 Msa1116010:three_prime_UTR 30.0%
GATATAATGTTCTTGATGTG+AGG - chr7_3:63538453-63538472 Msa1116010:three_prime_UTR 30.0%
!! TGGAGGGATAAATGTTTTTA+AGG + chr7_3:63538709-63538728 None:intergenic 30.0%
TTAAAAACATTTATCCCTCC+AGG - chr7_3:63538708-63538727 Msa1116010:CDS 30.0%
!! AAATGGACTAATGTGATGAA+GGG - chr7_3:63538751-63538770 Msa1116010:intron 30.0%
! TTTTAGTCCTGGAAATTGTA+GGG + chr7_3:63538823-63538842 None:intergenic 30.0%
!! ATTTTAGTCCTGGAAATTGT+AGG + chr7_3:63538824-63538843 None:intergenic 30.0%
CAATTTCCAGGACTAAAATA+TGG - chr7_3:63538825-63538844 Msa1116010:intron 30.0%
!!! ATGAATCCATATTTTAGTCC+TGG + chr7_3:63538834-63538853 None:intergenic 30.0%
!!! CATTTGCATTGATTTTCTGT+AGG - chr7_3:63538887-63538906 Msa1116010:CDS 30.0%
CTGTAGGTACAATCTTATTA+AGG - chr7_3:63538903-63538922 Msa1116010:intron 30.0%
! ACAGTGCACAATAATTTTTC+TGG - chr7_3:63538926-63538945 Msa1116010:intron 30.0%
! CAGTGCACAATAATTTTTCT+GGG - chr7_3:63538927-63538946 Msa1116010:intron 30.0%
! AATTTTTCTGGGTTGTTCTT+CGG - chr7_3:63538938-63538957 Msa1116010:intron 30.0%
! ACAATCAAGAGTTTAGTTTC+AGG + chr7_3:63539022-63539041 None:intergenic 30.0%
TAAACTCTTGATTGTTTGTC+AGG - chr7_3:63539027-63539046 Msa1116010:intron 30.0%
GTTTCTCAATTCTCAGTATT+AGG + chr7_3:63539274-63539293 None:intergenic 30.0%
ATACTGAGAATTGAGAAACA+TGG - chr7_3:63539275-63539294 Msa1116010:intron 30.0%
TACTGAGAATTGAGAAACAT+GGG - chr7_3:63539276-63539295 Msa1116010:intron 30.0%
AGAGCATATGATCATGTTTA+TGG + chr7_3:63539317-63539336 None:intergenic 30.0%
! ATTTGTCTCTTTTAGACTCT+TGG + chr7_3:63539349-63539368 None:intergenic 30.0%
AGAGTCTAAAAGAGACAAAT+AGG - chr7_3:63539349-63539368 Msa1116010:intron 30.0%
GTGTAAAAAAAAACAGGGTA+AGG + chr7_3:63539788-63539807 None:intergenic 30.0%
! TAATAAATGTCCTTTTGTGG+GGG + chr7_3:63539863-63539882 None:intergenic 30.0%
TAGCAAGAACACAGAAATTT+AGG - chr7_3:63539953-63539972 Msa1116010:intron 30.0%
! TAGGAATTTTATGCTTCTTG+TGG + chr7_3:63540026-63540045 None:intergenic 30.0%
! ATGTTATGCATGCTACATTT+TGG + chr7_3:63540164-63540183 None:intergenic 30.0%
ATGTAACATGCATTATGTGA+GGG + chr7_3:63540582-63540601 None:intergenic 30.0%
TATGTAACATGCATTATGTG+AGG + chr7_3:63540583-63540602 None:intergenic 30.0%
AAAACATGTTGATGTGAATG+AGG - chr7_3:63540632-63540651 Msa1116010:CDS 30.0%
GGAAAGAGATAATGTTAGTA+TGG - chr7_3:63540664-63540683 Msa1116010:CDS 30.0%
TAATGTTAGTATGGCTATCA+TGG - chr7_3:63540673-63540692 Msa1116010:CDS 30.0%
! ATGTAACTGGTTCTTCAATA+CGG + chr7_3:63540887-63540906 None:intergenic 30.0%
ACAAACACACATTCTCACAA+TGG - chr7_3:63538099-63538118 Msa1116010:three_prime_UTR 35.0%
AGTTAAGATAAGGAGTTACC+AGG + chr7_3:63538146-63538165 None:intergenic 35.0%
! GTTGTGTTTTCAGCAACTTA+GGG - chr7_3:63538282-63538301 Msa1116010:three_prime_UTR 35.0%
GAAAATACAGACAATGATCC+TGG - chr7_3:63538536-63538555 Msa1116010:CDS 35.0%
ATTTCAATGACCCATCCAAA+TGG - chr7_3:63538734-63538753 Msa1116010:intron 35.0%
TCACATTAGTCCATTTGGAT+GGG + chr7_3:63538747-63538766 None:intergenic 35.0%
ATCACATTAGTCCATTTGGA+TGG + chr7_3:63538748-63538767 None:intergenic 35.0%
CTTCATCACATTAGTCCATT+TGG + chr7_3:63538752-63538771 None:intergenic 35.0%
!! CAAATGGACTAATGTGATGA+AGG - chr7_3:63538750-63538769 Msa1116010:intron 35.0%
ATTTCATCCCTACAATTTCC+AGG - chr7_3:63538813-63538832 Msa1116010:intron 35.0%
! ATTTTTCTGGGTTGTTCTTC+GGG - chr7_3:63538939-63538958 Msa1116010:intron 35.0%
GATTGTACGAAATCAGGATT+TGG + chr7_3:63538980-63538999 None:intergenic 35.0%
AATTAGCAATCAAAGAGGGT+AGG + chr7_3:63539078-63539097 None:intergenic 35.0%
TGGGTTCTTCATGAAAGTTT+GGG + chr7_3:63539107-63539126 None:intergenic 35.0%
TTGGGTTCTTCATGAAAGTT+TGG + chr7_3:63539108-63539127 None:intergenic 35.0%
ATAATGACTGGTGTAGTACT+TGG + chr7_3:63539201-63539220 None:intergenic 35.0%
TAGTAGGATTACCAGAATGT+AGG - chr7_3:63539381-63539400 Msa1116010:intron 35.0%
ATGATACCCATAACCCAAAT+AGG - chr7_3:63539599-63539618 Msa1116010:intron 35.0%
! TTCTGTCCTATTTGGGTTAT+GGG + chr7_3:63539608-63539627 None:intergenic 35.0%
CGTATAATACACCAAATGGT+GGG + chr7_3:63539762-63539781 None:intergenic 35.0%
GATGCGTATAATACACCAAA+TGG + chr7_3:63539766-63539785 None:intergenic 35.0%
! AATAAATGTCCTTTTGTGGG+GGG + chr7_3:63539862-63539881 None:intergenic 35.0%
! GTGTTCTTGCTATGTATTTC+AGG + chr7_3:63539945-63539964 None:intergenic 35.0%
ACAGAAATTTAGGCATGAGT+GGG - chr7_3:63539963-63539982 Msa1116010:intron 35.0%
AATCTCCAGATTACATCTCA+AGG + chr7_3:63540080-63540099 None:intergenic 35.0%
AATGTAGCATGCATAACATC+TGG - chr7_3:63540165-63540184 Msa1116010:intron 35.0%
ATTCAAATGTCCCTACAGAA+TGG + chr7_3:63540289-63540308 None:intergenic 35.0%
! ACACAGCTGAAATTTTTCCT+TGG + chr7_3:63540364-63540383 None:intergenic 35.0%
AGGAAAAATTTCAGCTGTGT+TGG - chr7_3:63540364-63540383 Msa1116010:intron 35.0%
GGAAAAATTTCAGCTGTGTT+GGG - chr7_3:63540365-63540384 Msa1116010:intron 35.0%
!!! ACTTTTAGTCTTAGCCTGAA+GGG + chr7_3:63540539-63540558 None:intergenic 35.0%
!!! AACTTTTAGTCTTAGCCTGA+AGG + chr7_3:63540540-63540559 None:intergenic 35.0%
AGACTAAAAGTTCCATCGAT+TGG - chr7_3:63540548-63540567 Msa1116010:CDS 35.0%
TGTAACATGCATTATGTGAG+GGG + chr7_3:63540581-63540600 None:intergenic 35.0%
GAAATGTGAGACTAGAATTG+AGG - chr7_3:63540603-63540622 Msa1116010:CDS 35.0%
TGTTGATGTGAATGAGGTTA+TGG - chr7_3:63540638-63540657 Msa1116010:CDS 35.0%
ATGTGAATGAGGTTATGGAA+TGG - chr7_3:63540643-63540662 Msa1116010:CDS 35.0%
AAAGACGAAGACTATGTAAC+TGG + chr7_3:63540900-63540919 None:intergenic 35.0%
TAAGATAAGGAGTTACCAGG+AGG + chr7_3:63538143-63538162 None:intergenic 40.0%
! GGTTGTGTTTTCAGCAACTT+AGG - chr7_3:63538281-63538300 Msa1116010:three_prime_UTR 40.0%
! TGTAACAGCTGATGATGCTA+AGG - chr7_3:63538412-63538431 Msa1116010:three_prime_UTR 40.0%
TACAGACAATGATCCTGGTA+TGG - chr7_3:63538541-63538560 Msa1116010:intron 40.0%
GTCATTGAAATTGTCCTGGA+GGG + chr7_3:63538725-63538744 None:intergenic 40.0%
ATGGGTCATTGAAATTGTCC+TGG + chr7_3:63538729-63538748 None:intergenic 40.0%
! TTCACGGATTGTACGAAATC+AGG + chr7_3:63538986-63539005 None:intergenic 40.0%
AGGCTGTATTTGACTCTTCA+CGG + chr7_3:63539002-63539021 None:intergenic 40.0%
CTCTTGATTGTTTGTCAGGA+AGG - chr7_3:63539031-63539050 Msa1116010:intron 40.0%
TTGTTTGTCAGGAAGGATTG+AGG - chr7_3:63539038-63539057 Msa1116010:intron 40.0%
AACCAAACCAAAGCAGAGTT+GGG + chr7_3:63539126-63539145 None:intergenic 40.0%
TAACCAAACCAAAGCAGAGT+TGG + chr7_3:63539127-63539146 None:intergenic 40.0%
GATTACCAGAATGTAGGCAA+TGG - chr7_3:63539387-63539406 Msa1116010:intron 40.0%
! GTTCTGTCCTATTTGGGTTA+TGG + chr7_3:63539609-63539628 None:intergenic 40.0%
GCGTATAATACACCAAATGG+TGG + chr7_3:63539763-63539782 None:intergenic 40.0%
! ATAAATGTCCTTTTGTGGGG+GGG + chr7_3:63539861-63539880 None:intergenic 40.0%
ACCCAAAAACTAAACACCTC+AGG - chr7_3:63539886-63539905 Msa1116010:intron 40.0%
!!! GCCTGAGGTGTTTAGTTTTT+GGG + chr7_3:63539890-63539909 None:intergenic 40.0%
TATTTCAGGATAGACCTTGC+CGG + chr7_3:63539931-63539950 None:intergenic 40.0%
CACAGAAATTTAGGCATGAG+TGG - chr7_3:63539962-63539981 Msa1116010:intron 40.0%
TGTTGCCTTGAGATGTAATC+TGG - chr7_3:63540072-63540091 Msa1116010:CDS 40.0%
TGCAGCAGCAAATAAGTTAG+AGG - chr7_3:63540128-63540147 Msa1116010:intron 40.0%
AGCAGCAAATAAGTTAGAGG+AGG - chr7_3:63540131-63540150 Msa1116010:intron 40.0%
GTAGGGACATTTGAATCTGT+TGG - chr7_3:63540293-63540312 Msa1116010:intron 40.0%
!! ATTTGAATCTGTTGGCTCGA+CGG - chr7_3:63540301-63540320 Msa1116010:intron 40.0%
AAGTAAATTACCACCGCAGT+GGG + chr7_3:63540718-63540737 None:intergenic 40.0%
AAAGTAAATTACCACCGCAG+TGG + chr7_3:63540719-63540738 None:intergenic 40.0%
TGGTTCTTCAATACGGTACA+TGG + chr7_3:63540880-63540899 None:intergenic 40.0%
ACACACATTCTCACAATGGC+AGG - chr7_3:63538103-63538122 Msa1116010:three_prime_UTR 45.0%
CACACATTCTCACAATGGCA+GGG - chr7_3:63538104-63538123 Msa1116010:three_prime_UTR 45.0%
TCAGCAACTTAGGGAGATGT+TGG - chr7_3:63538291-63538310 Msa1116010:three_prime_UTR 45.0%
CAACTTAGGGAGATGTTGGT+TGG - chr7_3:63538295-63538314 Msa1116010:three_prime_UTR 45.0%
CATTGAGATACTACCTTCCC+TGG + chr7_3:63538350-63538369 None:intergenic 45.0%
GGAAGGAGAAATTCCATACC+AGG + chr7_3:63538557-63538576 None:intergenic 45.0%
GGTCATTGAAATTGTCCTGG+AGG + chr7_3:63538726-63538745 None:intergenic 45.0%
TCTTCGGGATACCATTCACT+AGG - chr7_3:63538954-63538973 Msa1116010:intron 45.0%
TCAGGATTTGGCCTAGTGAA+TGG + chr7_3:63538968-63538987 None:intergenic 45.0%
TGAAGAACCCAACTCTGCTT+TGG - chr7_3:63539116-63539135 Msa1116010:intron 45.0%
AACCCAACTCTGCTTTGGTT+TGG - chr7_3:63539121-63539140 Msa1116010:intron 45.0%
CTCATCCATTGCCTACATTC+TGG + chr7_3:63539395-63539414 None:intergenic 45.0%
CAGAATGTAGGCAATGGATG+AGG - chr7_3:63539393-63539412 Msa1116010:intron 45.0%
! CAAGCAGTCAGGTACTGTAT+CGG + chr7_3:63539455-63539474 None:intergenic 45.0%
ATCTCCATCATCCACTGCAA+AGG + chr7_3:63539506-63539525 None:intergenic 45.0%
GGGTATCATCCTCGGATATT+GGG + chr7_3:63539588-63539607 None:intergenic 45.0%
TGGGTATCATCCTCGGATAT+TGG + chr7_3:63539589-63539608 None:intergenic 45.0%
TGGGTTATGGGTATCATCCT+CGG + chr7_3:63539596-63539615 None:intergenic 45.0%
GTGGAGGTTCTGTCCTATTT+GGG + chr7_3:63539615-63539634 None:intergenic 45.0%
TGTGGAGGTTCTGTCCTATT+TGG + chr7_3:63539616-63539635 None:intergenic 45.0%
TAACCTCCAATCACAACCAG+AGG - chr7_3:63539665-63539684 Msa1116010:intron 45.0%
AACCTCCAATCACAACCAGA+GGG - chr7_3:63539666-63539685 Msa1116010:intron 45.0%
TTCATCCCTCTGGTTGTGAT+TGG + chr7_3:63539674-63539693 None:intergenic 45.0%
ATTAAAGCTCCCGCATATGC+AGG - chr7_3:63539722-63539741 Msa1116010:intron 45.0%
TTAAAGCTCCCGCATATGCA+GGG - chr7_3:63539723-63539742 Msa1116010:intron 45.0%
! TAAATGTCCTTTTGTGGGGG+GGG + chr7_3:63539860-63539879 None:intergenic 45.0%
!!! GGCCTGAGGTGTTTAGTTTT+TGG + chr7_3:63539891-63539910 None:intergenic 45.0%
AACACCTCAGGCCTTGATAA+CGG - chr7_3:63539898-63539917 Msa1116010:intron 45.0%
GCAAATAAGTTAGAGGAGGC+TGG - chr7_3:63540135-63540154 Msa1116010:intron 45.0%
GGACTTCAAACTGTGAAACC+AGG - chr7_3:63540186-63540205 Msa1116010:intron 45.0%
CTCTGCTTGATCAGGAAAGA+AGG + chr7_3:63540499-63540518 None:intergenic 45.0%
ATCAGCTTCTCTGCTTGATC+AGG + chr7_3:63540507-63540526 None:intergenic 45.0%
AGGGGAAAACAACCAATCGA+TGG + chr7_3:63540563-63540582 None:intergenic 45.0%
AGTAAATTACCACCGCAGTG+GGG + chr7_3:63540717-63540736 None:intergenic 45.0%
TTCAAACACCGTACGTTGCT+GGG - chr7_3:63540834-63540853 Msa1116010:intron 45.0%
CAAATTGTCCCAGCAACGTA+CGG + chr7_3:63540845-63540864 None:intergenic 45.0%
!!! TTTTAATTATTATTCTTAAA+AGG + chr7_3:63540261-63540280 None:intergenic 5.0%
GATAAGGAGTTACCAGGAGG+TGG + chr7_3:63538140-63538159 None:intergenic 50.0%
! ACAATGCAAGGAGCATGCCA+GGG - chr7_3:63538330-63538349 Msa1116010:three_prime_UTR 50.0%
CGATACAGTACCTGACTGCT+TGG - chr7_3:63539453-63539472 Msa1116010:intron 50.0%
TACAGTACCTGACTGCTTGG+TGG - chr7_3:63539456-63539475 Msa1116010:intron 50.0%
TATCCTACCACCAAGCAGTC+AGG + chr7_3:63539466-63539485 None:intergenic 50.0%
CCACTGCAAAGGATGCTTTC+TGG + chr7_3:63539495-63539514 None:intergenic 50.0%
!! CCAGAAAGCATCCTTTGCAG+TGG - chr7_3:63539492-63539511 Msa1116010:intron 50.0%
GCATCCTTTGCAGTGGATGA+TGG - chr7_3:63539499-63539518 Msa1116010:intron 50.0%
ATAGTAGCGCCCAATATCCG+AGG - chr7_3:63539576-63539595 Msa1116010:intron 50.0%
ACAGAACCTCCACAATGACG+AGG - chr7_3:63539622-63539641 Msa1116010:intron 50.0%
ATCCCTCTGGTTGTGATTGG+AGG + chr7_3:63539671-63539690 None:intergenic 50.0%
! AGCACGCTATTTCATCCCTC+TGG + chr7_3:63539684-63539703 None:intergenic 50.0%
ACAATTGTACCGTTGCGCCA+AGG - chr7_3:63539814-63539833 Msa1116010:intron 50.0%
! AAATGTCCTTTTGTGGGGGG+GGG + chr7_3:63539859-63539878 None:intergenic 50.0%
GCAGCAGACCTTGACAAAGA+AGG + chr7_3:63540111-63540130 None:intergenic 50.0%
TTGCAGAATGCTGGCAAAGC+TGG - chr7_3:63540326-63540345 Msa1116010:intron 50.0%
GAATGCTGGCAAAGCTGGTT+TGG - chr7_3:63540331-63540350 Msa1116010:intron 50.0%
!! GCTGGTTTGGTGCAAATCCA+AGG - chr7_3:63540344-63540363 Msa1116010:intron 50.0%
AGCAGAGAAGCTGATCCAAC+TGG - chr7_3:63540512-63540531 Msa1116010:CDS 50.0%
CTAGATTGTCTACCCCACTG+CGG - chr7_3:63540702-63540721 Msa1116010:CDS 50.0%
CTTCAAACACCGTACGTTGC+TGG - chr7_3:63540833-63540852 Msa1116010:intron 50.0%
! CACAATGCAAGGAGCATGCC+AGG - chr7_3:63538329-63538348 Msa1116010:three_prime_UTR 55.0%
! GTACCTGACTGCTTGGTGGT+AGG - chr7_3:63539460-63539479 Msa1116010:intron 55.0%
CTCCACAATGACGAGGACGT+GGG - chr7_3:63539629-63539648 Msa1116010:intron 55.0%
TTCCCACGTCCTCGTCATTG+TGG + chr7_3:63539634-63539653 None:intergenic 55.0%
TTTCCGGACCCTGCATATGC+GGG + chr7_3:63539734-63539753 None:intergenic 55.0%
CTTTCCGGACCCTGCATATG+CGG + chr7_3:63539735-63539754 None:intergenic 55.0%
GCATATGCAGGGTCCGGAAA+GGG - chr7_3:63539734-63539753 Msa1116010:intron 55.0%
CATATGCAGGGTCCGGAAAG+GGG - chr7_3:63539735-63539754 Msa1116010:intron 55.0%
! CAAATGGTGGGACCCCTTTC+CGG + chr7_3:63539750-63539769 None:intergenic 55.0%
! AATGTCCTTTTGTGGGGGGG+GGG + chr7_3:63539858-63539877 None:intergenic 55.0%
! TGTGCCGTTATCAAGGCCTG+AGG + chr7_3:63539905-63539924 None:intergenic 55.0%
!! CCTTGATAACGGCACATCGC+CGG - chr7_3:63539909-63539928 Msa1116010:intron 55.0%
TCGACGGAGTTGCAGAATGC+TGG - chr7_3:63540317-63540336 Msa1116010:intron 55.0%
CTGATCCAACTGGTCCCTTC+AGG - chr7_3:63540522-63540541 Msa1116010:CDS 55.0%
CTTAGCCTGAAGGGACCAGT+TGG + chr7_3:63540530-63540549 None:intergenic 55.0%
GGACTGCTTTCTCCACCTCC+TGG - chr7_3:63538125-63538144 Msa1116010:three_prime_UTR 60.0%
! TGCAAGGAGCATGCCAGGGA+AGG - chr7_3:63538334-63538353 Msa1116010:three_prime_UTR 60.0%
CCACGTCCTCGTCATTGTGG+AGG + chr7_3:63539631-63539650 None:intergenic 60.0%
CCTCCACAATGACGAGGACG+TGG - chr7_3:63539628-63539647 Msa1116010:intron 60.0%
CGCATATGCAGGGTCCGGAA+AGG - chr7_3:63539733-63539752 Msa1116010:intron 60.0%
CGGAAAGGGGTCCCACCATT+TGG - chr7_3:63539748-63539767 Msa1116010:intron 60.0%
! ATGTCCTTTTGTGGGGGGGG+GGG + chr7_3:63539857-63539876 None:intergenic 60.0%
! CCGGCGATGTGCCGTTATCA+AGG + chr7_3:63539912-63539931 None:intergenic 60.0%
ATAACGGCACATCGCCGGCA+AGG - chr7_3:63539914-63539933 Msa1116010:intron 60.0%
GATTGTCTACCCCACTGCGG+TGG - chr7_3:63540705-63540724 Msa1116010:CDS 60.0%
GCTCCCGCATATGCAGGGTC+CGG - chr7_3:63539728-63539747 Msa1116010:intron 65.0%
! TGTCCTTTTGTGGGGGGGGG+GGG + chr7_3:63539856-63539875 None:intergenic 65.0%
! TCCTTTTGTGGGGGGGGGGG+GGG + chr7_3:63539854-63539873 None:intergenic 70.0%
! GTCCTTTTGTGGGGGGGGGG+GGG + chr7_3:63539855-63539874 None:intergenic 70.0%
! TTTTGTGGGGGGGGGGGGGG+GGG + chr7_3:63539851-63539870 None:intergenic 75.0%
! CTTTTGTGGGGGGGGGGGGG+GGG + chr7_3:63539852-63539871 None:intergenic 75.0%
! CCTTTTGTGGGGGGGGGGGG+GGG + chr7_3:63539853-63539872 None:intergenic 75.0%
! GGGGGGGGGCCTTGGCGCAA+CGG + chr7_3:63539826-63539845 None:intergenic 80.0%
! TTTGTGGGGGGGGGGGGGGG+GGG + chr7_3:63539850-63539869 None:intergenic 80.0%
! CCCCCCCCCCCCCCCACAAA+AGG - chr7_3:63539850-63539869 Msa1116010:intron 80.0%
! TTGTGGGGGGGGGGGGGGGG+GGG + chr7_3:63539849-63539868 None:intergenic 85.0%
! TGTGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539848-63539867 None:intergenic 90.0%
! GGGGGGGGGGGGGGGGGCCT+TGG + chr7_3:63539834-63539853 None:intergenic 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539846-63539865 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr7_3:63539847-63539866 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 63538096 63540938 63538096 ID=Msa1116010;Name=Msa1116010
chr7_3 mRNA 63538096 63540938 63538096 ID=Msa1116010-mRNA-1;Parent=Msa1116010;Name=Msa1116010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=22|1|1|1|0.8|0.83|6|390|234
chr7_3 exon 63538096 63538556 63538096 ID=Msa1116010-mRNA-1:exon:14928;Parent=Msa1116010-mRNA-1
chr7_3 exon 63538633 63538737 63538633 ID=Msa1116010-mRNA-1:exon:14927;Parent=Msa1116010-mRNA-1
chr7_3 exon 63538827 63538912 63538827 ID=Msa1116010-mRNA-1:exon:14926;Parent=Msa1116010-mRNA-1
chr7_3 exon 63539975 63540125 63539975 ID=Msa1116010-mRNA-1:exon:14925;Parent=Msa1116010-mRNA-1
chr7_3 exon 63540477 63540739 63540477 ID=Msa1116010-mRNA-1:exon:14924;Parent=Msa1116010-mRNA-1
chr7_3 exon 63540888 63540938 63540888 ID=Msa1116010-mRNA-1:exon:14923;Parent=Msa1116010-mRNA-1
chr7_3 five_prime_UTR 63540917 63540938 63540917 ID=Msa1116010-mRNA-1:five_prime_utr;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63540888 63540916 63540888 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63540477 63540739 63540477 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63539975 63540125 63539975 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63538827 63538912 63538827 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63538633 63538737 63538633 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 CDS 63538486 63538556 63538486 ID=Msa1116010-mRNA-1:cds;Parent=Msa1116010-mRNA-1
chr7_3 three_prime_UTR 63538096 63538485 63538096 ID=Msa1116010-mRNA-1:three_prime_utr;Parent=Msa1116010-mRNA-1
Gene Sequence

>Msa1116010

ATGGCAGGGACTGCTTTCTCCACCTCCTGCAACTTAGGGAGATGTTGGTTGGTAGTAAAAACTCACAATGCAAGGAGCATGCCAGGGAAGGTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTCCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTACAATCTTATTAAGGACAGTGCACAATAATTTTTCTGGGTTGTTCTTCGGGATACCATTCACTAGGCCAAATCCTGATTTCGTACAATCCGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTTTGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGAGGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGGACATTTGAATCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCTGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>Msa1116010

MAGTAFSTSCNLGRCWLVVKTHNARSMPGKVVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTILLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEEAGFQNVACITSGLQTVKPGTFESVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG*