AlfalfaGEDB | Msa1426870

M. sativa cultivar zhongmu-4 / Msa1426870

KEGG: K02639
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426870	XP_003608621.1	98.571	70	1	0	2	71	117	186	1.59e-42	146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426870	sp\|Q9C7Y4\|FDC2_ARATH	88.571	70	8	0	2	71	112	181	5.74e-41	134

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426870	G7JGG5	98.571	70	1	0	2	71	117	186	7.59e-43	146

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa1426870	0.807507	4.886617e-50	-8.615850e-47
Msa0000220	Msa1426870	0.869814	2.334567e-66	-8.615850e-47
Msa0001460	Msa1426870	0.817071	3.987893e-52	-8.615850e-47
Msa0001510	Msa1426870	0.806974	6.338556e-50	-8.615850e-47
Msa0001540	Msa1426870	0.838109	3.494726e-57	-8.615850e-47
Msa0002060	Msa1426870	0.851824	6.901185e-61	-8.615850e-47
Msa0003470	Msa1426870	0.836542	8.805372e-57	-8.615850e-47
Msa0005160	Msa1426870	0.856857	2.422300e-62	-8.615850e-47
Msa0005190	Msa1426870	0.826361	2.829451e-54	-8.615850e-47
Msa0007160	Msa1426870	0.854824	9.518343e-62	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426870	MtrunA17_Chr4g0054691	98.571	70	1	0	2	71	117	186	1.46e-46	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1426870	AT1G32550.1	88.571	70	8	0	2	71	112	181	5.83e-42	134
Msa1426870	AT1G32550.2	72.093	86	8	1	2	71	109	194	7.08e-38	124

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Find 30 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACGTACCTGCTCTCTCAATT+CGG	0.472163	tig0026083:-94	None:intergenic
ACGTCTTCAATATGAACTAT+CGG	0.579743	tig0026083:-4021	None:intergenic
AGAAACTCAAGATGAAGATG+AGG	0.630393	tig0026083:+1006	Msa1426870:CDS
AGAATACACATATAAACATG+AGG	0.606206	tig0026083:-4240	None:intergenic
AGATGATTACGCCTTGGAGT+TGG	0.525321	tig0026083:+3929	Msa1426870:CDS
ATAATGTGAGAAAATGAAAA+TGG	0.394552	tig0026083:-4111	None:intergenic
CAAACGCACAGTAATGGATA+AGG	0.522361	tig0026083:+4406	Msa1426870:three_prime_UTR
CAGGTATATTGGCTTCAATT+TGG	0.291335	tig0026083:+3779	Msa1426870:intron
CCCTTGACTCACAGGTATAT+TGG	0.273197	tig0026083:+3768	Msa1426870:intron
CTACTTCAAGATCAGAGTAT+GGG	0.545399	tig0026083:-985	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCTTTAGCATCATTGAAGA+TGG	-	tig0026083:228-247	None:intergenic	30.0%
ATGTTATTATAGAGTAGAGG+AGG	+	tig0026083:334-353	Msa1426870:intron	30.0%
CAGGAAATAAGACATTGAAT+TGG	+	tig0026083:474-493	Msa1426870:intron	30.0%
CTTAACTACTTGTTTGTGTT+AGG	-	tig0026083:732-751	None:intergenic	30.0%
AATATCTTCGTTCTGTTGTA+GGG	-	tig0026083:761-780	None:intergenic	30.0%
AAATATCTTCGTTCTGTTGT+AGG	-	tig0026083:762-781	None:intergenic	30.0%
GTAGTTGTTAACTACTATAG+TGG	-	tig0026083:832-851	None:intergenic	30.0%
TATAGTAGTTAACAACTACG+AGG	+	tig0026083:833-852	Msa1426870:intron	30.0%
AACAGAGAAATAAGAGACAT+TGG	-	tig0026083:900-919	None:intergenic	30.0%
CTAATCAACAAAGCAATCTT+AGG	+	tig0026083:1232-1251	Msa1426870:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0026083	gene	16	4435	16	ID=Msa1426870;Name=Msa1426870
tig0026083	mRNA	16	4435	16	ID=Msa1426870-mRNA-1;Parent=Msa1426870;Name=Msa1426870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38\|1\|1\|1\|1\|1\|4\|467\|71
tig0026083	exon	16	110	16	ID=Msa1426870-mRNA-1:exon:5159;Parent=Msa1426870-mRNA-1
tig0026083	exon	959	1027	959	ID=Msa1426870-mRNA-1:exon:5160;Parent=Msa1426870-mRNA-1
tig0026083	exon	3782	3826	3782	ID=Msa1426870-mRNA-1:exon:5161;Parent=Msa1426870-mRNA-1
tig0026083	exon	3924	4435	3924	ID=Msa1426870-mRNA-1:exon:5162;Parent=Msa1426870-mRNA-1
tig0026083	five_prime_UTR	16	53	16	ID=Msa1426870-mRNA-1:five_prime_utr;Parent=Msa1426870-mRNA-1
tig0026083	CDS	54	110	54	ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083	CDS	959	1027	959	ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083	CDS	3782	3826	3782	ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083	CDS	3924	3968	3924	ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083	three_prime_UTR	3969	4435	3969	ID=Msa1426870-mRNA-1:three_prime_utr;Parent=Msa1426870-mRNA-1

Gene Sequence	>Msa1426870 ATGGGAAAATTAAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCAAGAGGACCAGTGGAAAGAGATGATTACGCCTTGGAGTTGGCCATGGGTGACGAGTAA
Protein sequence	>Msa1426870 MGKLKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE*