AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1426870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426870 MtrunA17_Chr4g0054691 98.571 70 1 0 2 71 117 186 1.46e-46 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1426870 AT1G32550.1 88.571 70 8 0 2 71 112 181 5.83e-42 134
Msa1426870 AT1G32550.2 72.093 86 8 1 2 71 109 194 7.08e-38 124

Find 30 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTGACTCACAGGTATAT+TGG 0.273197 tig0026083:+3768 Msa1426870:intron
TTTGCATAGTATAGAAGATT+TGG 0.283845 tig0026083:+4298 Msa1426870:three_prime_UTR
TAGAAGATTTGGCATGCTTT+TGG 0.287361 tig0026083:+4309 Msa1426870:three_prime_UTR
CAGGTATATTGGCTTCAATT+TGG 0.291335 tig0026083:+3779 Msa1426870:intron
TCTACTTCAAGATCAGAGTA+TGG 0.311983 tig0026083:-986 None:intergenic
TTGTTACAATGTGGTTCAAT+AGG 0.320510 tig0026083:+4335 Msa1426870:three_prime_UTR
CTTATCCATTACTGTGCGTT+TGG 0.350556 tig0026083:-4405 None:intergenic
ATAATGTGAGAAAATGAAAA+TGG 0.394552 tig0026083:-4111 None:intergenic
TCTGTCATTGATGTACCTTT+TGG 0.447476 tig0026083:+4366 Msa1426870:three_prime_UTR
TCGTGTTCAGTGTTTGTGTT+TGG 0.462056 tig0026083:+4160 Msa1426870:three_prime_UTR
ACGTACCTGCTCTCTCAATT+CGG 0.472163 tig0026083:-94 None:intergenic
CTATCGGTGCTACAGAGAAA+AGG 0.494887 tig0026083:-4005 None:intergenic
CTGAACCAAACGCACAGTAA+TGG 0.497127 tig0026083:+4400 Msa1426870:three_prime_UTR
CAAACGCACAGTAATGGATA+AGG 0.522361 tig0026083:+4406 Msa1426870:three_prime_UTR
AGATGATTACGCCTTGGAGT+TGG 0.525321 tig0026083:+3929 Msa1426870:CDS
TTACGCCTTGGAGTTGGCCA+TGG 0.537209 tig0026083:+3935 Msa1426870:CDS
CTACTTCAAGATCAGAGTAT+GGG 0.545399 tig0026083:-985 None:intergenic
GGAAAGAGATGATTACGCCT+TGG 0.577081 tig0026083:+3923 Msa1426870:intron
ACGTCTTCAATATGAACTAT+CGG 0.579743 tig0026083:-4021 None:intergenic
TCAGCATTGACTCAACCAAA+AGG 0.579919 tig0026083:-4381 None:intergenic
GCCTGCTTACTCGTCACCCA+TGG 0.581117 tig0026083:-3952 None:intergenic
TACGCCTTGGAGTTGGCCAT+GGG 0.581629 tig0026083:+3936 Msa1426870:CDS
GTCACCCATGGCCAACTCCA+AGG 0.593375 tig0026083:-3940 None:intergenic
GCCATGGGTGACGAGTAAGC+AGG 0.593531 tig0026083:+3951 Msa1426870:exon
AGAATACACATATAAACATG+AGG 0.606206 tig0026083:-4240 None:intergenic
GTTTATATGTGTATTCTCTG+TGG 0.614176 tig0026083:+4246 Msa1426870:three_prime_UTR
AGAAACTCAAGATGAAGATG+AGG 0.630393 tig0026083:+1006 Msa1426870:CDS
GGTGCTACAGAGAAAAGGAA+AGG 0.645678 tig0026083:-4000 None:intergenic
GAATACACATATAAACATGA+GGG 0.663094 tig0026083:-4239 None:intergenic
TATGAGTATCTGACACGTGT+TGG 0.664513 tig0026083:+4045 Msa1426870:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAAATAAAATGAATA+AGG - tig0026083:1264-1283 None:intergenic 10.0%
!! ATTATGATTTATTCAAATTT+AGG + tig0026083:2939-2958 Msa1426870:intron 10.0%
!! ATAAAAAAAGTTCATAAACA+TGG - tig0026083:124-143 None:intergenic 15.0%
!!! ATGAACTTTTTTTATTGAAT+CGG + tig0026083:129-148 Msa1426870:intron 15.0%
!! ATAACATGTATAAAGTATAA+TGG - tig0026083:321-340 None:intergenic 15.0%
!!! TAATCATAACTTTCATTTTA+TGG + tig0026083:1044-1063 Msa1426870:intron 15.0%
!! AAATATTCAAGAATATTCAA+AGG - tig0026083:1172-1191 None:intergenic 15.0%
!!! ATATTCTTGAATATTTTACA+CGG + tig0026083:1176-1195 Msa1426870:intron 15.0%
!! ATACTAAAACTAATTAAACA+TGG - tig0026083:1292-1311 None:intergenic 15.0%
!!! TTTTTGTAATTTCAAATAGA+AGG - tig0026083:2055-2074 None:intergenic 15.0%
!!! AAAATTAAGTTGTTAGAAAA+GGG - tig0026083:2177-2196 None:intergenic 15.0%
!!! AAAAATTAAGTTGTTAGAAA+AGG - tig0026083:2178-2197 None:intergenic 15.0%
!!! TCATTTTATAATTAGTGTTT+AGG - tig0026083:2406-2425 None:intergenic 15.0%
!! TTCAAATTTAGGAATTATTT+AGG + tig0026083:2950-2969 Msa1426870:intron 15.0%
!!! ATATAATTTGTGTGTTAAAA+AGG - tig0026083:3900-3919 None:intergenic 15.0%
!!! AAGTATATACGTGTTTTTTT+TGG + tig0026083:548-567 Msa1426870:intron 20.0%
!! AATATACAAACAATCATAAG+AGG - tig0026083:669-688 None:intergenic 20.0%
!!! TTACATTTTGATTTCTTTGT+TGG + tig0026083:689-708 Msa1426870:intron 20.0%
!!! TAAGCAAAAAACTACTTTTT+AGG - tig0026083:2328-2347 None:intergenic 20.0%
!! TGGATAAAATTATACTTATC+CGG + tig0026083:3108-3127 Msa1426870:intron 20.0%
!!! TCGTATTATTTTCATATGTT+GGG - tig0026083:3387-3406 None:intergenic 20.0%
!!! TCATATTATTTTCTTTCTTC+TGG + tig0026083:3497-3516 Msa1426870:intron 20.0%
!! ACTATTCTAATCAAATATTG+TGG + tig0026083:3523-3542 Msa1426870:intron 20.0%
!! TTAACACACAAATTATATAC+AGG + tig0026083:3902-3921 Msa1426870:intron 20.0%
!! ATAATGTGAGAAAATGAAAA+TGG - tig0026083:4114-4133 None:intergenic 20.0%
! TTTCAAGATTAGAATGAGAA+TGG - tig0026083:270-289 None:intergenic 25.0%
! TACATGTTATTATAGAGTAG+AGG + tig0026083:331-350 Msa1426870:intron 25.0%
! AATGTGAACATGTTTAGTAT+TGG - tig0026083:413-432 None:intergenic 25.0%
! AATAAAGTAAACTTGTAGAC+AGG - tig0026083:447-466 None:intergenic 25.0%
! GTTTACTTTATTCATTTGAC+AGG + tig0026083:455-474 Msa1426870:intron 25.0%
!!! CGCATTCATATTTTAATAAC+TGG - tig0026083:580-599 None:intergenic 25.0%
!! TTTGTTGGTGTTTCAATTTA+AGG + tig0026083:704-723 Msa1426870:intron 25.0%
!! TTGTTGGTGTTTCAATTTAA+GGG + tig0026083:705-724 Msa1426870:intron 25.0%
!! TAACTACTATAGTGGAAAAA+GGG - tig0026083:824-843 None:intergenic 25.0%
!! TTAACTACTATAGTGGAAAA+AGG - tig0026083:825-844 None:intergenic 25.0%
!! TTTTGTTCCATTTCATTTTC+AGG + tig0026083:937-956 Msa1426870:intron 25.0%
!! TTTGTTCCATTTCATTTTCA+GGG + tig0026083:938-957 Msa1426870:intron 25.0%
! AAAATATCTCACATTACTTC+TGG + tig0026083:1142-1161 Msa1426870:intron 25.0%
!! TTGTTGATTAGATGACTAAT+TGG - tig0026083:1223-1242 None:intergenic 25.0%
! AATATGACTTTCAAAAGCAA+GGG - tig0026083:1333-1352 None:intergenic 25.0%
! TAATATGACTTTCAAAAGCA+AGG - tig0026083:1334-1353 None:intergenic 25.0%
! TGTCAATGCAAAACAAAAAT+AGG - tig0026083:1419-1438 None:intergenic 25.0%
!! TAATTTGGAGATCTTGTTTA+AGG + tig0026083:1445-1464 Msa1426870:intron 25.0%
!! AATTTGGAGATCTTGTTTAA+GGG + tig0026083:1446-1465 Msa1426870:intron 25.0%
!!! ATGTTGGTAGTAATCTTAAT+AGG + tig0026083:1500-1519 Msa1426870:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - tig0026083:1565-1584 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + tig0026083:1600-1619 Msa1426870:intron 25.0%
! ATAAGCTCTTGATTTATGTT+AGG + tig0026083:1803-1822 Msa1426870:intron 25.0%
! AAATTAAAGCAGTCATATGT+CGG - tig0026083:1565-1584 None:intergenic 25.0%
!!! TACTTTTTATTGAACAAACG+CGG + tig0026083:1600-1619 Msa1426870:intron 25.0%
! ATTTCAAATAGAAGGAGTTT+AGG - tig0026083:2047-2066 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - tig0026083:2338-2357 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+TGG + tig0026083:2338-2357 Msa1426870:intron 25.0%
!! TAATTAGTGTTTAGGATAGT+GGG - tig0026083:2398-2417 None:intergenic 25.0%
!! ATAATTAGTGTTTAGGATAG+TGG - tig0026083:2399-2418 None:intergenic 25.0%
!! TATGATGCTTTTCTATTTGT+TGG + tig0026083:2459-2478 Msa1426870:intron 25.0%
!!! ATCAATACTCTAGTTTTCTT+TGG + tig0026083:2501-2520 Msa1426870:intron 25.0%
! GTTATCACTGAAATTATTGT+TGG - tig0026083:2726-2745 None:intergenic 25.0%
! TAAACATGGAAATCAAATCA+AGG - tig0026083:2807-2826 None:intergenic 25.0%
!!! TGAAAGATCATTACTGATTT+TGG + tig0026083:2893-2912 Msa1426870:intron 25.0%
! AGCTAAACAAGGAAATAATT+AGG - tig0026083:2978-2997 None:intergenic 25.0%
! GGATAAAATTATACTTATCC+GGG + tig0026083:3109-3128 Msa1426870:intron 25.0%
!! GTCGTATTATTTTCATATGT+TGG - tig0026083:3388-3407 None:intergenic 25.0%
! ATTGTGGTTGATTATTTAAC+CGG + tig0026083:3539-3558 Msa1426870:intron 25.0%
!!! TAAACTATGTTGTGTTTTTG+AGG + tig0026083:3688-3707 Msa1426870:intron 25.0%
!!! ACATGTTTTCTTTGATAATG+TGG + tig0026083:3874-3893 Msa1426870:intron 25.0%
! GAATACACATATAAACATGA+GGG - tig0026083:4242-4261 None:intergenic 25.0%
! AGAATACACATATAAACATG+AGG - tig0026083:4243-4262 None:intergenic 25.0%
! TTTGCATAGTATAGAAGATT+TGG + tig0026083:4298-4317 Msa1426870:three_prime_UTR 25.0%
TTCTTTAGCATCATTGAAGA+TGG - tig0026083:228-247 None:intergenic 30.0%
ATGTTATTATAGAGTAGAGG+AGG + tig0026083:334-353 Msa1426870:intron 30.0%
CAGGAAATAAGACATTGAAT+TGG + tig0026083:474-493 Msa1426870:intron 30.0%
!! TCTACTCAAACTCATTTTTC+TGG + tig0026083:637-656 Msa1426870:intron 30.0%
CTTAACTACTTGTTTGTGTT+AGG - tig0026083:732-751 None:intergenic 30.0%
AATATCTTCGTTCTGTTGTA+GGG - tig0026083:761-780 None:intergenic 30.0%
AAATATCTTCGTTCTGTTGT+AGG - tig0026083:762-781 None:intergenic 30.0%
!! CGAAGATATTTTTCAGCTTA+TGG + tig0026083:771-790 Msa1426870:intron 30.0%
GTAGTTGTTAACTACTATAG+TGG - tig0026083:832-851 None:intergenic 30.0%
TATAGTAGTTAACAACTACG+AGG + tig0026083:833-852 Msa1426870:intron 30.0%
AACAGAGAAATAAGAGACAT+TGG - tig0026083:900-919 None:intergenic 30.0%
! AATGTCTCTTATTTCTCTGT+TGG + tig0026083:899-918 Msa1426870:intron 30.0%
! AGTAATGTGAGATATTTTGC+AGG - tig0026083:1140-1159 None:intergenic 30.0%
! GAATATTTTACACGGTCTTT+AGG + tig0026083:1184-1203 Msa1426870:intron 30.0%
CTAATCAACAAAGCAATCTT+AGG + tig0026083:1232-1251 Msa1426870:intron 30.0%
TTGAAAGTCATATTAGACTC+AGG + tig0026083:1339-1358 Msa1426870:intron 30.0%
TTCTATTAAATGTGTCCATC+CGG - tig0026083:1380-1399 None:intergenic 30.0%
! GCATTGACAAGACTTTAATT+TGG + tig0026083:1430-1449 Msa1426870:intron 30.0%
AGATTACTACCAACATCTAT+TGG - tig0026083:1496-1515 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + tig0026083:1601-1620 Msa1426870:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG - tig0026083:1927-1946 None:intergenic 30.0%
! ACTTTTTATTGAACAAACGC+GGG + tig0026083:1601-1620 Msa1426870:intron 30.0%
AAGGAAATACAATAGAGAGA+TGG + tig0026083:1927-1946 Msa1426870:intron 30.0%
! TGAGAGCATATTGAGAAAAA+AGG - tig0026083:2577-2596 None:intergenic 30.0%
! TCTTTGTTTGTATGCTATTG+TGG + tig0026083:2624-2643 Msa1426870:intron 30.0%
!!! TTGGTTTTGTAATGTTAGCA+TGG + tig0026083:2647-2666 Msa1426870:intron 30.0%
TTCCCACTAATGAATTGTAA+TGG + tig0026083:2750-2769 Msa1426870:intron 30.0%
CACCATTACAATTCATTAGT+GGG - tig0026083:2755-2774 None:intergenic 30.0%
TCACCATTACAATTCATTAG+TGG - tig0026083:2756-2775 None:intergenic 30.0%
AAGAGGAAAACTGATAAACA+TGG - tig0026083:2821-2840 None:intergenic 30.0%
ATTAGGAAGTTTCAAACAAG+AGG - tig0026083:2838-2857 None:intergenic 30.0%
TCAAGAAATTACACACAACA+AGG - tig0026083:2876-2895 None:intergenic 30.0%
!! ACTGATTTTGGTCAAATGAT+CGG + tig0026083:2905-2924 Msa1426870:intron 30.0%
GAAATTTCAGAGCAAGTTAA+AGG - tig0026083:3457-3476 None:intergenic 30.0%
ACGTCTTCAATATGAACTAT+CGG - tig0026083:4024-4043 None:intergenic 30.0%
GTTTATATGTGTATTCTCTG+TGG + tig0026083:4246-4265 Msa1426870:three_prime_UTR 30.0%
! TTTTGGATCTTGTTACAATG+TGG + tig0026083:4326-4345 Msa1426870:three_prime_UTR 30.0%
TTGTTACAATGTGGTTCAAT+AGG + tig0026083:4335-4354 Msa1426870:three_prime_UTR 30.0%
CATCATTGAAGATGGTTGAT+GGG - tig0026083:220-239 None:intergenic 35.0%
CTTCAATGATGCTAAAGAAG+AGG + tig0026083:229-248 Msa1426870:intron 35.0%
!! AAAAGGGTGTTCATAGCAAA+TGG - tig0026083:808-827 None:intergenic 35.0%
GCATAACCCTGAAAATGAAA+TGG - tig0026083:947-966 None:intergenic 35.0%
CTACTTCAAGATCAGAGTAT+GGG - tig0026083:988-1007 None:intergenic 35.0%
TCTACTTCAAGATCAGAGTA+TGG - tig0026083:989-1008 None:intergenic 35.0%
AGAAACTCAAGATGAAGATG+AGG + tig0026083:1006-1025 Msa1426870:CDS 35.0%
CTGCTTAGTGATGATTTGAT+TGG - tig0026083:1088-1107 None:intergenic 35.0%
!! ACGGTCTTTAGGATATATAC+TGG + tig0026083:1195-1214 Msa1426870:intron 35.0%
CAAGGGTTTCAAAAGGAAAA+AGG - tig0026083:1316-1335 None:intergenic 35.0%
TCAAAAGCAAGGGTTTCAAA+AGG - tig0026083:1323-1342 None:intergenic 35.0%
ACATAAATCAAGAGCTAGTC+AGG - tig0026083:1537-1556 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + tig0026083:1602-1621 Msa1426870:intron 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG + tig0026083:1635-1654 Msa1426870:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG + tig0026083:1643-1662 Msa1426870:intron 35.0%
AAGGGAGAAAAGGAAATACA+AGG + tig0026083:1653-1672 Msa1426870:intron 35.0%
AGGGAGAAAAGGAAATACAA+GGG + tig0026083:1654-1673 Msa1426870:intron 35.0%
! GTTTGTTACAAAGGGAGAAA+AGG - tig0026083:1643-1662 None:intergenic 35.0%
!! CAACAGTGGTTTGTTACAAA+GGG - tig0026083:1635-1654 None:intergenic 35.0%
! CTTTTTATTGAACAAACGCG+GGG + tig0026083:1602-1621 Msa1426870:intron 35.0%
!! CATTTCTCAATAGGTTGGTT+GGG - tig0026083:2004-2023 None:intergenic 35.0%
!! TCATTTCTCAATAGGTTGGT+TGG - tig0026083:2005-2024 None:intergenic 35.0%
TGGAACAGCAGTTATGAAAT+GGG - tig0026083:2101-2120 None:intergenic 35.0%
CTAGCATAATTTCTCACGAT+GGG + tig0026083:2148-2167 Msa1426870:intron 35.0%
ATAATACACTATACTCCCTC+CGG + tig0026083:2243-2262 Msa1426870:intron 35.0%
TTGCTTATAAATGTGACTGG+AGG + tig0026083:2341-2360 Msa1426870:intron 35.0%
TGCTTATAAATGTGACTGGA+GGG + tig0026083:2342-2361 Msa1426870:intron 35.0%
!! AGAGTATTGATTGTCACAGT+TGG - tig0026083:2492-2511 None:intergenic 35.0%
TGTTTGTATGCTATTGTGGT+TGG + tig0026083:2628-2647 Msa1426870:intron 35.0%
! TAATGTTAGCATGGCATTGA+GGG + tig0026083:2656-2675 Msa1426870:intron 35.0%
! TAGAGAGCATAAGCTAAACA+AGG - tig0026083:2989-3008 None:intergenic 35.0%
TGCTCTCTAGATATCAGATT+TGG + tig0026083:3000-3019 Msa1426870:intron 35.0%
GCTCTCTAGATATCAGATTT+GGG + tig0026083:3001-3020 Msa1426870:intron 35.0%
TGCAGTTCGTACATCTAAAT+CGG + tig0026083:3042-3061 Msa1426870:intron 35.0%
AAGCTGTGTTTCTTTGTACT+CGG + tig0026083:3160-3179 Msa1426870:intron 35.0%
ATCCAGAATGAATGGTGTAA+AGG + tig0026083:3216-3235 Msa1426870:intron 35.0%
TCCAGAATGAATGGTGTAAA+GGG + tig0026083:3217-3236 Msa1426870:intron 35.0%
!!! CAGGTGTTTTTTGTGTCTTA+TGG - tig0026083:3281-3300 None:intergenic 35.0%
! AGTATGTTGTGTTCAAGTTC+AGG - tig0026083:3300-3319 None:intergenic 35.0%
ACACAACATACTGTCTATAG+AGG + tig0026083:3308-3327 Msa1426870:intron 35.0%
ATAGGTCCTAAAACAAACCA+TGG + tig0026083:3352-3371 Msa1426870:intron 35.0%
!!! CTTCATCCATGGTTTGTTTT+AGG - tig0026083:3361-3380 None:intergenic 35.0%
ACACTAACTCCTTATTGCAA+GGG + tig0026083:3406-3425 Msa1426870:intron 35.0%
! CCAACAAATGAACACTTTTC+CGG - tig0026083:3561-3580 None:intergenic 35.0%
CTTAGTAAGAGTCAACTTGA+GGG + tig0026083:3591-3610 Msa1426870:intron 35.0%
TTAGTAAGAGTCAACTTGAG+GGG + tig0026083:3592-3611 Msa1426870:intron 35.0%
!! CAGGTATATTGGCTTCAATT+TGG + tig0026083:3779-3798 Msa1426870:intron 35.0%
!! TTTGGACGTTATTTTGCAAG+AGG + tig0026083:3797-3816 Msa1426870:CDS 35.0%
TATATAACAGAACCTACCAC+TGG - tig0026083:3824-3843 None:intergenic 35.0%
! ATTCTCTGTGGTCTTTTTGT+TGG + tig0026083:4258-4277 Msa1426870:three_prime_UTR 35.0%
! TAGAAGATTTGGCATGCTTT+TGG + tig0026083:4309-4328 Msa1426870:three_prime_UTR 35.0%
! TCTGTCATTGATGTACCTTT+TGG + tig0026083:4366-4385 Msa1426870:three_prime_UTR 35.0%
TGCGCTGTTCGTATAAAGAA+TGG + tig0026083:35-54 Msa1426870:exon 40.0%
GCGCTGTTCGTATAAAGAAT+GGG + tig0026083:36-55 Msa1426870:exon 40.0%
GGGAAAATTAAAACAGCCAG+AGG + tig0026083:56-75 Msa1426870:CDS 40.0%
GCATCATTGAAGATGGTTGA+TGG - tig0026083:221-240 None:intergenic 40.0%
! CCAACATCTATTGGTCTAAG+CGG - tig0026083:1487-1506 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG - tig0026083:1756-1775 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG + tig0026083:1634-1653 Msa1426870:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG + tig0026083:1682-1701 Msa1426870:intron 40.0%
TGTAACTGCTAGTAACCACT+AGG - tig0026083:1700-1719 None:intergenic 40.0%
!! CCAACAGTGGTTTGTTACAA+AGG - tig0026083:1634-1653 None:intergenic 40.0%
CCTTTGTAACAAACCACTGT+TGG + tig0026083:1756-1775 Msa1426870:intron 40.0%
GAGGAATTATCATCCAACAG+TGG - tig0026083:1772-1791 None:intergenic 40.0%
! CAACAGTGGTTAGTTGCAAA+GGG + tig0026083:1900-1919 Msa1426870:intron 40.0%
GTTAGTTGCAAAGGGAGAAA+AGG + tig0026083:1908-1927 Msa1426870:intron 40.0%
TGTAACAGCTAGTAACCACT+AGG + tig0026083:1958-1977 Msa1426870:intron 40.0%
CTAAGCTCTCTAATTCCTAG+TGG - tig0026083:1682-1701 None:intergenic 40.0%
TGGGTCATTTCTCAATAGGT+TGG - tig0026083:2009-2028 None:intergenic 40.0%
GGATTGGGTCATTTCTCAAT+AGG - tig0026083:2013-2032 None:intergenic 40.0%
! ATAGAAGGAGTTTAGGACAG+AGG - tig0026083:2040-2059 None:intergenic 40.0%
ACAGCAGTTATGAAATGGGA+CGG - tig0026083:2097-2116 None:intergenic 40.0%
CTGGAACAGCAGTTATGAAA+TGG - tig0026083:2102-2121 None:intergenic 40.0%
CATTTCATAACTGCTGTTCC+AGG + tig0026083:2100-2119 Msa1426870:intron 40.0%
GAAAGACCATTAGTCCAAGA+GGG - tig0026083:2126-2145 None:intergenic 40.0%
AGAAAGACCATTAGTCCAAG+AGG - tig0026083:2127-2146 None:intergenic 40.0%
CCATCGTGAGAAATTATGCT+AGG - tig0026083:2150-2169 None:intergenic 40.0%
CCTAGCATAATTTCTCACGA+TGG + tig0026083:2147-2166 Msa1426870:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - tig0026083:2261-2280 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - tig0026083:2262-2281 None:intergenic 40.0%
GTAATGTTAGCATGGCATTG+AGG + tig0026083:2655-2674 Msa1426870:intron 40.0%
! AATGTTAGCATGGCATTGAG+GGG + tig0026083:2657-2676 Msa1426870:intron 40.0%
TGGTGATTTGATGTTAGCTG+TGG + tig0026083:2770-2789 Msa1426870:intron 40.0%
! GGAGAGTTCACTAAAGCATT+AGG - tig0026083:2855-2874 None:intergenic 40.0%
TAACTCGTCAAGTATAGACC+CGG - tig0026083:3130-3149 None:intergenic 40.0%
CTCCTACTATCCAGAATGAA+TGG + tig0026083:3208-3227 Msa1426870:intron 40.0%
CACCATTCATTCTGGATAGT+AGG - tig0026083:3213-3232 None:intergenic 40.0%
TCCCTTTACACCATTCATTC+TGG - tig0026083:3221-3240 None:intergenic 40.0%
AATGAATGGTGTAAAGGGAG+AGG + tig0026083:3222-3241 Msa1426870:intron 40.0%
ATGAATGGTGTAAAGGGAGA+GGG + tig0026083:3223-3242 Msa1426870:intron 40.0%
TGTGTCTTATGGTACAGAAG+CGG - tig0026083:3270-3289 None:intergenic 40.0%
!! GAGGTCTTTGAGATTCCTTT+CGG + tig0026083:3327-3346 Msa1426870:intron 40.0%
!! AGGTCTTTGAGATTCCTTTC+GGG + tig0026083:3328-3347 Msa1426870:intron 40.0%
TTGAGATTCCTTTCGGGAAT+AGG + tig0026083:3334-3353 Msa1426870:intron 40.0%
!!! TTTTAGGACCTATTCCCGAA+AGG - tig0026083:3345-3364 None:intergenic 40.0%
ATGTTGGGTAACTTCATCCA+TGG - tig0026083:3372-3391 None:intergenic 40.0%
GACACTAACTCCTTATTGCA+AGG + tig0026083:3405-3424 Msa1426870:intron 40.0%
CACTGATATCCCTTGCAATA+AGG - tig0026083:3418-3437 None:intergenic 40.0%
!! CCGGAAAAGTGTTCATTTGT+TGG + tig0026083:3558-3577 Msa1426870:intron 40.0%
GCTTAGTAAGAGTCAACTTG+AGG + tig0026083:3590-3609 Msa1426870:intron 40.0%
CCAATATACCTGTGAGTCAA+GGG - tig0026083:3771-3790 None:intergenic 40.0%
!! TTATTTTGCAAGAGGACCAG+TGG + tig0026083:3805-3824 Msa1426870:CDS 40.0%
TATGAGTATCTGACACGTGT+TGG + tig0026083:4045-4064 Msa1426870:three_prime_UTR 40.0%
TCGTGTTCAGTGTTTGTGTT+TGG + tig0026083:4160-4179 Msa1426870:three_prime_UTR 40.0%
!! TCAGCATTGACTCAACCAAA+AGG - tig0026083:4384-4403 None:intergenic 40.0%
CTTATCCATTACTGTGCGTT+TGG - tig0026083:4408-4427 None:intergenic 40.0%
!! CAAACGCACAGTAATGGATA+AGG + tig0026083:4406-4425 Msa1426870:three_prime_UTR 40.0%
!! TTAAAACAGCCAGAGGCACT+TGG + tig0026083:63-82 Msa1426870:CDS 45.0%
!! TAAAACAGCCAGAGGCACTT+GGG + tig0026083:64-83 Msa1426870:CDS 45.0%
ACGTACCTGCTCTCTCAATT+CGG - tig0026083:97-116 None:intergenic 45.0%
AGTAGCAATGCATGATGCTC+TGG + tig0026083:168-187 Msa1426870:intron 45.0%
CAGGATAATCCAAGTCAAGC+CGG + tig0026083:1358-1377 Msa1426870:intron 45.0%
ATAATCCAAGTCAAGCCGGA+TGG + tig0026083:1362-1381 Msa1426870:intron 45.0%
CCGCTTAGACCAATAGATGT+TGG + tig0026083:1484-1503 Msa1426870:intron 45.0%
GGGGAATTATCATCCAACAG+TGG + tig0026083:1621-1640 Msa1426870:intron 45.0%
GAGCTTATTGAACAAACGCG+AGG - tig0026083:1791-1810 None:intergenic 45.0%
GGGGAATTATCATCCAACAG+TGG + tig0026083:1621-1640 Msa1426870:intron 45.0%
CCTTTGCAACTAACCACTGT+TGG - tig0026083:1902-1921 None:intergenic 45.0%
! CCAACAGTGGTTAGTTGCAA+AGG + tig0026083:1899-1918 Msa1426870:intron 45.0%
GCATAATTTCTCACGATGGG+AGG + tig0026083:2151-2170 Msa1426870:intron 45.0%
! TGATTGTCACAGTTGGTGCA+CGG - tig0026083:2485-2504 None:intergenic 45.0%
ATGAAGCGTACAACAACAGC+AGG - tig0026083:2536-2555 None:intergenic 45.0%
! ATGTTAGCATGGCATTGAGG+GGG + tig0026083:2658-2677 Msa1426870:intron 45.0%
!!! GCGGCTTAGTCTTTTTTCCT+TGG - tig0026083:3251-3270 None:intergenic 45.0%
GATGATGAGAAGATGCTCAG+AGG - tig0026083:3479-3498 None:intergenic 45.0%
TAAGAGTCAACTTGAGGGGA+TGG + tig0026083:3596-3615 Msa1426870:intron 45.0%
! ATTTGCTACCCTTGACTCAC+AGG + tig0026083:3760-3779 Msa1426870:intron 45.0%
CCCTTGACTCACAGGTATAT+TGG + tig0026083:3768-3787 Msa1426870:intron 45.0%
GCCAATATACCTGTGAGTCA+AGG - tig0026083:3772-3791 None:intergenic 45.0%
GGAAAGAGATGATTACGCCT+TGG + tig0026083:3923-3942 Msa1426870:intron 45.0%
AGATGATTACGCCTTGGAGT+TGG + tig0026083:3929-3948 Msa1426870:CDS 45.0%
! GGTGCTACAGAGAAAAGGAA+AGG - tig0026083:4003-4022 None:intergenic 45.0%
!! CTATCGGTGCTACAGAGAAA+AGG - tig0026083:4008-4027 None:intergenic 45.0%
CTGAACCAAACGCACAGTAA+TGG + tig0026083:4400-4419 Msa1426870:three_prime_UTR 45.0%
ATCTGCCGAATTGAGAGAGC+AGG + tig0026083:89-108 Msa1426870:CDS 50.0%
AGCAATGCATGATGCTCTGG+AGG + tig0026083:171-190 Msa1426870:intron 50.0%
TAGAGTAGAGGAGGACGAAG+TGG + tig0026083:343-362 Msa1426870:intron 50.0%
TAGGACAGAGGCAGAGGATT+GGG - tig0026083:2028-2047 None:intergenic 50.0%
TTAGGACAGAGGCAGAGGAT+TGG - tig0026083:2029-2048 None:intergenic 50.0%
GTACAACAACAGCAGGTGGA+AGG - tig0026083:2529-2548 None:intergenic 50.0%
AAGCGTACAACAACAGCAGG+TGG - tig0026083:2533-2552 None:intergenic 50.0%
ATCCACAACCCTCAAGCATG+AGG - tig0026083:3093-3112 None:intergenic 50.0%
TCGGCTCATATCCTCGTACT+CGG + tig0026083:3179-3198 Msa1426870:intron 50.0%
TGTAAAGGGAGAGGGAACCA+AGG + tig0026083:3231-3250 Msa1426870:intron 50.0%
TTTGCAAGAGGACCAGTGGT+AGG + tig0026083:3809-3828 Msa1426870:intron 50.0%
GCAGATATCCCAAGTGCCTC+TGG - tig0026083:75-94 None:intergenic 55.0%
AGTAGAGGAGGACGAAGTGG+TGG + tig0026083:346-365 Msa1426870:intron 55.0%
GGACGAAGTGGTGGTTGTAG+TGG + tig0026083:355-374 Msa1426870:intron 55.0%
! TGTGTCCATCCGGCTTGACT+TGG - tig0026083:1370-1389 None:intergenic 55.0%
! GGAGTTTAGGACAGAGGCAG+AGG - tig0026083:2034-2053 None:intergenic 55.0%
TCCAGGCCCTCTTGGACTAA+TGG + tig0026083:2117-2136 Msa1426870:intron 55.0%
ACCATTAGTCCAAGAGGGCC+TGG - tig0026083:2121-2140 None:intergenic 55.0%
ACGTGCAAGCCTCATGCTTG+AGG + tig0026083:3081-3100 Msa1426870:intron 55.0%
CGTGCAAGCCTCATGCTTGA+GGG + tig0026083:3082-3101 Msa1426870:intron 55.0%
AGCCTCATGCTTGAGGGTTG+TGG + tig0026083:3088-3107 Msa1426870:intron 55.0%
AGGAGAATGAGCCGAGTACG+AGG - tig0026083:3193-3212 None:intergenic 55.0%
TTACGCCTTGGAGTTGGCCA+TGG + tig0026083:3935-3954 Msa1426870:CDS 55.0%
TACGCCTTGGAGTTGGCCAT+GGG + tig0026083:3936-3955 Msa1426870:CDS 55.0%
ACTGCTGTTCCAGGCCCTCT+TGG + tig0026083:2109-2128 Msa1426870:intron 60.0%
GTCACCCATGGCCAACTCCA+AGG - tig0026083:3943-3962 None:intergenic 60.0%
GCCATGGGTGACGAGTAAGC+AGG + tig0026083:3951-3970 Msa1426870:exon 60.0%
GCCTGCTTACTCGTCACCCA+TGG - tig0026083:3955-3974 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0026083 gene 16 4435 16 ID=Msa1426870;Name=Msa1426870
tig0026083 mRNA 16 4435 16 ID=Msa1426870-mRNA-1;Parent=Msa1426870;Name=Msa1426870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38|1|1|1|1|1|4|467|71
tig0026083 exon 16 110 16 ID=Msa1426870-mRNA-1:exon:5159;Parent=Msa1426870-mRNA-1
tig0026083 exon 959 1027 959 ID=Msa1426870-mRNA-1:exon:5160;Parent=Msa1426870-mRNA-1
tig0026083 exon 3782 3826 3782 ID=Msa1426870-mRNA-1:exon:5161;Parent=Msa1426870-mRNA-1
tig0026083 exon 3924 4435 3924 ID=Msa1426870-mRNA-1:exon:5162;Parent=Msa1426870-mRNA-1
tig0026083 five_prime_UTR 16 53 16 ID=Msa1426870-mRNA-1:five_prime_utr;Parent=Msa1426870-mRNA-1
tig0026083 CDS 54 110 54 ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083 CDS 959 1027 959 ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083 CDS 3782 3826 3782 ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083 CDS 3924 3968 3924 ID=Msa1426870-mRNA-1:cds;Parent=Msa1426870-mRNA-1
tig0026083 three_prime_UTR 3969 4435 3969 ID=Msa1426870-mRNA-1:three_prime_utr;Parent=Msa1426870-mRNA-1
Gene Sequence

>Msa1426870

ATGGGAAAATTAAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTATATTGGCTTCAATTTGGACGTTATTTTGCAAGAGGACCAGTGGAAAGAGATGATTACGCCTTGGAGTTGGCCATGGGTGACGAGTAA

Protein sequence

>Msa1426870

MGKLKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVYWLQFGRYFARGPVERDDYALELAMGDE*