Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011610 | XP_003589593.1 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 4.06e-132 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011610 | sp|Q84QC1|GCT23_ARATH | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 2.34e-94 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011610 | G7I8G3 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 1.94e-132 | 377 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011610 | Msa0012460 | 0.805876 | 1.080327e-49 | -8.615850e-47 |
| Msa0011610 | Msa0037820 | 0.807654 | 4.547679e-50 | -8.615850e-47 |
| Msa0011610 | Msa0060530 | 0.940444 | 2.309223e-100 | -8.615850e-47 |
| Msa0011610 | Msa0078090 | 0.809107 | 2.227805e-50 | -8.615850e-47 |
| Msa0011610 | Msa0139050 | 0.800003 | 1.767272e-48 | -8.615850e-47 |
| Msa0011610 | Msa0144340 | 0.802925 | 4.451857e-49 | -8.615850e-47 |
| Msa0011610 | Msa0157020 | 0.809911 | 1.497483e-50 | -8.615850e-47 |
| Msa0011610 | Msa0192020 | 0.812164 | 4.864864e-51 | -8.615850e-47 |
| Msa0011610 | Msa0298970 | 0.807083 | 6.011403e-50 | -8.615850e-47 |
| Msa0011610 | Msa0373220 | 0.814860 | 1.242135e-51 | -8.615850e-47 |
| Msa0011610 | Msa0383570 | 0.813445 | 2.549927e-51 | -8.615850e-47 |
| Msa0011610 | Msa0413740 | 0.804272 | 2.339641e-49 | -8.615850e-47 |
| Msa0011610 | Msa0414990 | 0.829155 | 6.030683e-55 | -8.615850e-47 |
| Msa0011610 | Msa0432680 | 0.811233 | 7.757822e-51 | -8.615850e-47 |
| Msa0011610 | Msa0458790 | 0.814397 | 1.572990e-51 | -8.615850e-47 |
| Msa0011610 | Msa0468020 | 0.818128 | 2.304464e-52 | -8.615850e-47 |
| Msa0011610 | Msa0505390 | 0.800473 | 1.417764e-48 | -8.615850e-47 |
| Msa0011610 | Msa0528870 | 0.808320 | 3.282351e-50 | -8.615850e-47 |
| Msa0011610 | Msa0553350 | 0.817808 | 2.721494e-52 | -8.615850e-47 |
| Msa0011610 | Msa0576420 | 0.820480 | 6.709724e-53 | -8.615850e-47 |
| Msa0011610 | Msa0622390 | 0.804156 | 2.473046e-49 | -8.615850e-47 |
| Msa0011610 | Msa0647710 | 0.818818 | 1.607098e-52 | -8.615850e-47 |
| Msa0011610 | Msa0690530 | 0.824723 | 6.915783e-54 | -8.615850e-47 |
| Msa0011610 | Msa0760730 | 0.809325 | 2.000315e-50 | -8.615850e-47 |
| Msa0011610 | Msa0792510 | 0.800316 | 1.525951e-48 | -8.615850e-47 |
| Msa0011610 | Msa0855020 | 0.814364 | 1.600087e-51 | -8.615850e-47 |
| Msa0011610 | Msa0864150 | 0.808651 | 2.788758e-50 | -8.615850e-47 |
| Msa0011610 | Msa0899700 | 0.803631 | 3.179372e-49 | -8.615850e-47 |
| Msa0011610 | Msa0931730 | 0.812749 | 3.624105e-51 | -8.615850e-47 |
| Msa0011610 | Msa1022310 | 0.804538 | 2.059315e-49 | -8.615850e-47 |
| Msa0011610 | Msa1061180 | 0.806196 | 9.252497e-50 | -8.615850e-47 |
| Msa0011610 | Msa1081850 | 0.803899 | 2.796756e-49 | -8.615850e-47 |
| Msa0011610 | Msa1106560 | 0.820776 | 5.736623e-53 | -8.615850e-47 |
| Msa0011610 | Msa1116010 | 0.810689 | 1.017111e-50 | -8.615850e-47 |
| Msa0011610 | Msa1120660 | 0.811427 | 7.039525e-51 | -8.615850e-47 |
| Msa0011610 | Msa1145370 | 0.800435 | 1.443054e-48 | -8.615850e-47 |
| Msa0011610 | Msa1284030 | 0.808005 | 3.830109e-50 | -8.615850e-47 |
| Msa0011610 | Msa1309100 | 0.828432 | 9.022492e-55 | -8.615850e-47 |
| Msa0011610 | Msa1323060 | 0.806186 | 9.294238e-50 | -8.615850e-47 |
| Msa0011610 | Msa1326000 | 0.814217 | 1.723784e-51 | -8.615850e-47 |
| Msa0011610 | Msa1385620 | 0.803303 | 3.718034e-49 | -8.615850e-47 |
| Msa0011610 | Msa1426870 | 0.813678 | 2.266059e-51 | -8.615850e-47 |
| Msa0011610 | Msa1462600 | 0.821840 | 3.259702e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011610 | MtrunA17_Chr1g0160141 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 3.73e-136 | 377 |
| Msa0011610 | MtrunA17_Chr3g0139221 | 54.444 | 180 | 81 | 1 | 1 | 179 | 1 | 180 | 4.52e-69 | 209 |
| Msa0011610 | MtrunA17_Chr1g0147641 | 47.541 | 183 | 71 | 2 | 1 | 182 | 1 | 159 | 5.50e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0011610 | AT1G44790.1 | 69.730 | 185 | 56 | 0 | 1 | 185 | 1 | 185 | 2.38e-95 | 275 |
| Msa0011610 | AT5G26220.1 | 54.396 | 182 | 82 | 1 | 1 | 181 | 1 | 182 | 6.72e-69 | 209 |
| Msa0011610 | AT4G31290.1 | 52.717 | 184 | 86 | 1 | 1 | 183 | 1 | 184 | 3.53e-67 | 205 |
| Msa0011610 | AT5G26220.2 | 52.874 | 174 | 81 | 1 | 1 | 173 | 1 | 174 | 6.16e-64 | 195 |
Find 57 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAAATTCTGAGTTTAAT+TGG | 0.163058 | 1_1:+17496708 | None:intergenic |
| TTCCAATTAAACTCAGAATT+TGG | 0.190157 | 1_1:-17496710 | Msa0011610:five_prime_UTR |
| AATTCTTTCCAGAATGTTAT+TGG | 0.206562 | 1_1:-17492013 | Msa0011610:three_prime_UTR |
| GCTACAACGCCAGCTATTTC+CGG | 0.218434 | 1_1:-17493419 | Msa0011610:CDS |
| AACATGGCAATATGGGTATT+TGG | 0.235187 | 1_1:-17496611 | Msa0011610:CDS |
| CCACCACAAACATGGCAATA+TGG | 0.253544 | 1_1:-17496619 | Msa0011610:exon |
| ATTATCTTCCAATAACATTC+TGG | 0.280357 | 1_1:+17492005 | None:intergenic |
| AAGCTATTATGGGGAACTTA+TGG | 0.298774 | 1_1:-17491836 | Msa0011610:three_prime_UTR |
| CTACAACGCCAGCTATTTCC+GGG | 0.360710 | 1_1:-17493418 | Msa0011610:CDS |
| GAAAAGGCTCTCCTTCAAAT+AGG | 0.367256 | 1_1:-17492256 | Msa0011610:intron |
| TTTACATTGACCTTCTTGTC+TGG | 0.370032 | 1_1:+17493289 | None:intergenic |
| CACCACAAACATGGCAATAT+GGG | 0.400036 | 1_1:-17496618 | Msa0011610:exon |
| AACTACGATGAACGTCTTGT+TGG | 0.410652 | 1_1:-17496557 | Msa0011610:CDS |
| AGAGGAACACCTGAGTTTCC+TGG | 0.411123 | 1_1:-17496405 | Msa0011610:CDS |
| AAAGATCCTTACCTATTTGA+AGG | 0.411187 | 1_1:+17492245 | None:intergenic |
| AGGAAAAGATACTCTCTGTT+AGG | 0.426813 | 1_1:+17492283 | None:intergenic |
| GCAATATGGGTATTTGGTTA+CGG | 0.427063 | 1_1:-17496605 | Msa0011610:CDS |
| TGCTAAAGTCTCAGAATGTC+TGG | 0.436572 | 1_1:+17492065 | None:intergenic |
| GCCAGCTATTTCCGGGGCAT+TGG | 0.452973 | 1_1:-17493411 | Msa0011610:CDS |
| TTACATTGACCTTCTTGTCT+GGG | 0.454173 | 1_1:+17493290 | None:intergenic |
| TTGATCTTGCAAATGAAGTC+AGG | 0.482220 | 1_1:-17492135 | Msa0011610:CDS |
| GGTTCTTTGATTTCAAAAGC+TGG | 0.489200 | 1_1:-17496584 | Msa0011610:CDS |
| GAAAGAATTGAAGTTTCCAA+TGG | 0.503777 | 1_1:+17492027 | None:intergenic |
| ATTGCCATGTTTGTGGTGGT+TGG | 0.507092 | 1_1:+17496623 | None:intergenic |
| ACACAAATTTCTCCATCAGC+AGG | 0.508746 | 1_1:+17496363 | None:intergenic |
| ACCAATGCCCCGGAAATAGC+TGG | 0.509461 | 1_1:+17493410 | None:intergenic |
| GATCAATAACATGCTTGTCT+TGG | 0.509648 | 1_1:+17492152 | None:intergenic |
| AATCCATTATTAAAATCCAT+TGG | 0.516300 | 1_1:-17492043 | Msa0011610:three_prime_UTR |
| AAGGTCAATGTAAATTATCT+AGG | 0.519474 | 1_1:-17493280 | Msa0011610:CDS |
| TACCCATATTGCCATGTTTG+TGG | 0.520168 | 1_1:+17496616 | None:intergenic |
| GTCACATTGGAACCTGCTGA+TGG | 0.545101 | 1_1:-17496375 | Msa0011610:CDS |
| TATAGCATCCCCAGACAAGA+AGG | 0.550775 | 1_1:-17493299 | Msa0011610:CDS |
| TACTCTCTGTTAGGTCCTGT+GGG | 0.551232 | 1_1:+17492292 | None:intergenic |
| ATACTCTCTGTTAGGTCCTG+TGG | 0.551871 | 1_1:+17492291 | None:intergenic |
| TGCACAGTATCTGGGAGTGC+GGG | 0.556827 | 1_1:-17493600 | Msa0011610:intron |
| TATCGACGTGTCTTCTACCA+AGG | 0.557154 | 1_1:-17496521 | Msa0011610:intron |
| TACATTGACCTTCTTGTCTG+GGG | 0.558045 | 1_1:+17493291 | None:intergenic |
| GTAATTGCTGCACAGTATCT+GGG | 0.564368 | 1_1:-17493608 | Msa0011610:intron |
| CCATATTGCCATGTTTGTGG+TGG | 0.571049 | 1_1:+17496619 | None:intergenic |
| TTAAGTTATTTCCATGACAA+AGG | 0.573493 | 1_1:-17491907 | Msa0011610:three_prime_UTR |
| TTAGGTTCTACTGATCATAG+AGG | 0.594149 | 1_1:-17496423 | Msa0011610:intron |
| AGGCAAATAGTTCAAGCTGA+AGG | 0.595905 | 1_1:-17492316 | Msa0011610:CDS |
| TCCAATGTGACAGTTCTACC+AGG | 0.598973 | 1_1:+17496387 | None:intergenic |
| ACAGTTCTACCAGGAAACTC+AGG | 0.599882 | 1_1:+17496396 | None:intergenic |
| CCTACCGACACAAATACTTG+TGG | 0.602172 | 1_1:+17491793 | None:intergenic |
| CTGCACAGTATCTGGGAGTG+CGG | 0.602691 | 1_1:-17493601 | Msa0011610:intron |
| ATAACCAACCACCACAAACA+TGG | 0.606349 | 1_1:-17496627 | Msa0011610:exon |
| GTTCAAGCTGAAGGTCCCAC+AGG | 0.607799 | 1_1:-17492307 | Msa0011610:CDS |
| TCCTGGTAGAACTGTCACAT+TGG | 0.616450 | 1_1:-17496388 | Msa0011610:CDS |
| GGAGAAGCAATACGATCGGA+AGG | 0.618346 | 1_1:-17493579 | Msa0011610:CDS |
| TTTCACTTACACCAATGCCC+CGG | 0.619835 | 1_1:+17493400 | None:intergenic |
| TGCGGGAGAAGCAATACGAT+CGG | 0.624661 | 1_1:-17493583 | Msa0011610:CDS |
| CCACAAGTATTTGTGTCGGT+AGG | 0.626918 | 1_1:-17491793 | Msa0011610:three_prime_UTR |
| CGTCTGTTGAAGAGATTGCA+AGG | 0.629037 | 1_1:-17493252 | Msa0011610:intron |
| GCAATCTCTTCAACAGACGC+AGG | 0.640958 | 1_1:+17493256 | None:intergenic |
| AGTTCCACAAGTATTTGTGT+CGG | 0.659497 | 1_1:-17491797 | Msa0011610:three_prime_UTR |
| TACAACGCCAGCTATTTCCG+GGG | 0.703197 | 1_1:-17493417 | Msa0011610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTCTAAATTTTTTTTTTTT+GGG | + | chr1_1:17492420-17492439 | None:intergenic | 10.0% |
| !!! | ATCTCTAAATTTTTTTTTTT+TGG | + | chr1_1:17492421-17492440 | None:intergenic | 10.0% |
| !!! | TTTTTAAAATCTATAACAAA+CGG | - | chr1_1:17492572-17492591 | Msa0011610:intron | 10.0% |
| !!! | TCATTATTATATAATTGTTT+TGG | - | chr1_1:17495347-17495366 | Msa0011610:intron | 10.0% |
| !! | ATTATCTATTTAAATGAGTT+AGG | - | chr1_1:17494383-17494402 | Msa0011610:intron | 15.0% |
| !!! | TTACTTTTAATTCTATATGA+TGG | - | chr1_1:17494694-17494713 | Msa0011610:intron | 15.0% |
| !!! | TTCTATCTTTTTCATATTAT+AGG | - | chr1_1:17496164-17496183 | Msa0011610:intron | 15.0% |
| !!! | GGAACTTGATAATTAAAAAT+TGG | + | chr1_1:17492170-17492189 | None:intergenic | 20.0% |
| !! | TCAGCAAAAGTAATTAATTA+TGG | + | chr1_1:17492191-17492210 | None:intergenic | 20.0% |
| !!! | TTAATTACTTTTGCTGATTA+AGG | - | chr1_1:17492194-17492213 | Msa0011610:intron | 20.0% |
| !!! | TTTTATAATCAGTAACAAAC+AGG | + | chr1_1:17492250-17492269 | None:intergenic | 20.0% |
| !! | ATTGAATACAACTACATTTA+AGG | + | chr1_1:17492928-17492947 | None:intergenic | 20.0% |
| !! | CTATTACATTAACTTAACAA+AGG | + | chr1_1:17493365-17493384 | None:intergenic | 20.0% |
| !! | AATGCAATCAATATTTGAAA+TGG | - | chr1_1:17493650-17493669 | Msa0011610:intron | 20.0% |
| !!! | AAAAGGAAATTTTGTTATCT+TGG | - | chr1_1:17494088-17494107 | Msa0011610:intron | 20.0% |
| !! | ATATTTAGAGATTAATGAGT+TGG | - | chr1_1:17494246-17494265 | Msa0011610:intron | 20.0% |
| !! | TGATATATGACAAAACATTA+TGG | - | chr1_1:17494278-17494297 | Msa0011610:intron | 20.0% |
| !!! | GAAAGCATTATTGAAAATTT+AGG | + | chr1_1:17494477-17494496 | None:intergenic | 20.0% |
| !! | CTTATTATATTGTCTTTCTT+GGG | - | chr1_1:17494501-17494520 | Msa0011610:intron | 20.0% |
| !! | CATGATAAGTTAAATCTAAA+AGG | - | chr1_1:17495430-17495449 | Msa0011610:intron | 20.0% |
| !! | TAAACAAGAGAAAACAAATA+AGG | - | chr1_1:17495745-17495764 | Msa0011610:intron | 20.0% |
| !! | AAACAAGAGAAAACAAATAA+GGG | - | chr1_1:17495746-17495765 | Msa0011610:intron | 20.0% |
| !!! | CATATTTTTACATCAAGTAT+TGG | - | chr1_1:17496026-17496045 | Msa0011610:intron | 20.0% |
| !! | AATCCATTATTAAAATCCAT+TGG | - | chr1_1:17496457-17496476 | Msa0011610:intron | 20.0% |
| !!! | TTTCCAATGGATTTTAATAA+TGG | + | chr1_1:17496463-17496482 | None:intergenic | 20.0% |
| !!! | TTGTTTTCATAAGCTATTAT+GGG | - | chr1_1:17496654-17496673 | Msa0011610:five_prime_UTR | 20.0% |
| ! | TTCCAATTAAACTCAGAATT+TGG | - | chr1_1:17491790-17491809 | Msa0011610:three_prime_UTR | 25.0% |
| ! | TTGAATTTGAAAAGTAACCT+TGG | + | chr1_1:17491999-17492018 | None:intergenic | 25.0% |
| !!! | TTTAGAGATTTTTTTGTCCT+TGG | - | chr1_1:17492296-17492315 | Msa0011610:CDS | 25.0% |
| ! | ACGTAAAAAATGTAACAAAC+AGG | - | chr1_1:17492648-17492667 | Msa0011610:intron | 25.0% |
| !! | AATAAGTTGAAAACAACTTG+TGG | - | chr1_1:17492812-17492831 | Msa0011610:intron | 25.0% |
| !! | CATTTTGCAAAAGGTTAAAA+AGG | + | chr1_1:17493104-17493123 | None:intergenic | 25.0% |
| !! | CTTTTTAACCTTTTGCAAAA+TGG | - | chr1_1:17493102-17493121 | Msa0011610:intron | 25.0% |
| !! | TAAGTTAACCATTTTGCAAA+AGG | + | chr1_1:17493113-17493132 | None:intergenic | 25.0% |
| !!! | TATTCACATTGTTTTGAAGT+TGG | - | chr1_1:17493165-17493184 | Msa0011610:intron | 25.0% |
| ! | CTCTTGAAAAAATTGTTGAT+TGG | - | chr1_1:17493290-17493309 | Msa0011610:CDS | 25.0% |
| ! | ATTAAGTACTTATCAAGAGT+GGG | - | chr1_1:17493400-17493419 | Msa0011610:intron | 25.0% |
| !!! | GGTTTTAGTTAGTCTTTTTA+AGG | - | chr1_1:17493421-17493440 | Msa0011610:CDS | 25.0% |
| ! | CGAAGATAAAAAGTTAAATG+TGG | + | chr1_1:17493522-17493541 | None:intergenic | 25.0% |
| ! | TTATCTTCGCTTAATTACAT+TGG | - | chr1_1:17493533-17493552 | Msa0011610:intron | 25.0% |
| ! | AAAAACAACAAACACTAAGA+AGG | + | chr1_1:17493559-17493578 | None:intergenic | 25.0% |
| ! | GATAATCTATTGGACATATA+AGG | + | chr1_1:17493927-17493946 | None:intergenic | 25.0% |
| !! | TTTTGACAAGTATTAGCTAT+TGG | + | chr1_1:17494051-17494070 | None:intergenic | 25.0% |
| !! | GTTTCTTTCATAGTTTTTCT+AGG | + | chr1_1:17494217-17494236 | None:intergenic | 25.0% |
| ! | CCAAGAAAGACAATATAATA+AGG | + | chr1_1:17494503-17494522 | None:intergenic | 25.0% |
| ! | CCTTATTATATTGTCTTTCT+TGG | - | chr1_1:17494500-17494519 | Msa0011610:intron | 25.0% |
| ! | TGTTACAAAGAATGTTATGA+TGG | + | chr1_1:17494538-17494557 | None:intergenic | 25.0% |
| !!! | CTTTTAATTCTATATGATGG+CGG | - | chr1_1:17494697-17494716 | Msa0011610:intron | 25.0% |
| ! | GACTATAATTATAAGTCTCA+AGG | + | chr1_1:17494740-17494759 | None:intergenic | 25.0% |
| ! | GTTACTTATTCCACTAATAA+AGG | - | chr1_1:17495031-17495050 | Msa0011610:intron | 25.0% |
| ! | AAAAGTTCAACCTTTATTAG+TGG | + | chr1_1:17495044-17495063 | None:intergenic | 25.0% |
| !!! | AAGGTTGAACTTTTTTTTTC+AGG | - | chr1_1:17495050-17495069 | Msa0011610:intron | 25.0% |
| ! | AAGGTCAATGTAAATTATCT+AGG | - | chr1_1:17495220-17495239 | Msa0011610:intron | 25.0% |
| !! | TATTTACTAGTCTCAATTTG+TGG | - | chr1_1:17495298-17495317 | Msa0011610:intron | 25.0% |
| ! | AATAATGAATACTCCAGTAA+AGG | + | chr1_1:17495335-17495354 | None:intergenic | 25.0% |
| ! | GAATCATAATACCTAGATAT+AGG | - | chr1_1:17495523-17495542 | Msa0011610:intron | 25.0% |
| !!! | CACTTTTTTGTATTTTTGTG+TGG | - | chr1_1:17495566-17495585 | Msa0011610:intron | 25.0% |
| !!! | AGTTTCAGATAATTTTCAAG+TGG | + | chr1_1:17495630-17495649 | None:intergenic | 25.0% |
| !! | AAAATTATCTGAAACTCCAA+TGG | - | chr1_1:17495634-17495653 | Msa0011610:intron | 25.0% |
| !! | TGCTAGTTTGACAAAAATAA+GGG | + | chr1_1:17495799-17495818 | None:intergenic | 25.0% |
| ! | GTAAAACCATTATGAATACA+AGG | - | chr1_1:17495960-17495979 | Msa0011610:intron | 25.0% |
| !!! | TTACATCAAGTATTGGTTAA+TGG | - | chr1_1:17496033-17496052 | Msa0011610:intron | 25.0% |
| ! | AAGATAGAAATCAAACTCAA+AGG | + | chr1_1:17496153-17496172 | None:intergenic | 25.0% |
| ! | AATTCTTTCCAGAATGTTAT+TGG | - | chr1_1:17496487-17496506 | Msa0011610:intron | 25.0% |
| ! | ATTATCTTCCAATAACATTC+TGG | + | chr1_1:17496498-17496517 | None:intergenic | 25.0% |
| !! | TTAAGTTATTTCCATGACAA+AGG | - | chr1_1:17496593-17496612 | Msa0011610:CDS | 25.0% |
| !!! | CTTTATTTTATCCTTTGTCA+TGG | + | chr1_1:17496607-17496626 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCATAAGCTATTA+TGG | - | chr1_1:17496653-17496672 | Msa0011610:five_prime_UTR | 25.0% |
| !! | TGTTTTCATAAGCTATTATG+GGG | - | chr1_1:17496655-17496674 | Msa0011610:five_prime_UTR | 25.0% |
| TGCCAAATTCTGAGTTTAAT+TGG | + | chr1_1:17491795-17491814 | None:intergenic | 30.0% | |
| TACATCAAAATCTTCACTGA+TGG | - | chr1_1:17492050-17492069 | Msa0011610:three_prime_UTR | 30.0% | |
| ACATCAAAATCTTCACTGAT+GGG | - | chr1_1:17492051-17492070 | Msa0011610:three_prime_UTR | 30.0% | |
| !!! | TTTTTCAAGGTGAATAAGTG+GGG | + | chr1_1:17492369-17492388 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAGGTGAATAAGT+GGG | + | chr1_1:17492370-17492389 | None:intergenic | 30.0% |
| TCCAGAATAGCTTATGAAAA+CGG | + | chr1_1:17492781-17492800 | None:intergenic | 30.0% | |
| ! | TTTTCTTGGATACACATACT+AGG | + | chr1_1:17492962-17492981 | None:intergenic | 30.0% |
| !!! | GAAAGTCATACTAGTTTTCT+TGG | + | chr1_1:17492976-17492995 | None:intergenic | 30.0% |
| TTTGATAAAAGATTGCTGTG+TGG | - | chr1_1:17493052-17493071 | Msa0011610:intron | 30.0% | |
| TTAACTTAGAATGCGAGAAA+TGG | - | chr1_1:17493125-17493144 | Msa0011610:intron | 30.0% | |
| TGGAACTTACTTCAAAAAGT+CGG | - | chr1_1:17493185-17493204 | Msa0011610:intron | 30.0% | |
| !!! | AATTTTTTCAAGAGCCTACA+CGG | + | chr1_1:17493284-17493303 | None:intergenic | 30.0% |
| CAAAGGTTCAATTCAACAAA+TGG | + | chr1_1:17493348-17493367 | None:intergenic | 30.0% | |
| TTAATGTAATAGCTGCTGTA+TGG | - | chr1_1:17493373-17493392 | Msa0011610:intron | 30.0% | |
| CATTAAGTACTTATCAAGAG+TGG | - | chr1_1:17493399-17493418 | Msa0011610:intron | 30.0% | |
| ! | TCAAACTTTTGACCAAGTTT+TGG | - | chr1_1:17493811-17493830 | Msa0011610:intron | 30.0% |
| ATCTCTATGGGATAATCTAT+TGG | + | chr1_1:17493937-17493956 | None:intergenic | 30.0% | |
| TAGCAATGACTAATCTCTAT+GGG | + | chr1_1:17493949-17493968 | None:intergenic | 30.0% | |
| TTAGCAATGACTAATCTCTA+TGG | + | chr1_1:17493950-17493969 | None:intergenic | 30.0% | |
| TGAAATTCTCAGCATACAAA+AGG | - | chr1_1:17494071-17494090 | Msa0011610:intron | 30.0% | |
| ACTAAGTGAAATTGACTACA+TGG | + | chr1_1:17494315-17494334 | None:intergenic | 30.0% | |
| ATGTAGTCAATTTCACTTAG+TGG | - | chr1_1:17494314-17494333 | Msa0011610:intron | 30.0% | |
| TGTAGTCAATTTCACTTAGT+GGG | - | chr1_1:17494315-17494334 | Msa0011610:intron | 30.0% | |
| TCTTTCGTCATTTCTACAAT+AGG | - | chr1_1:17494438-17494457 | Msa0011610:intron | 30.0% | |
| CATAGCTAATTAGATCATTG+TGG | - | chr1_1:17495164-17495183 | Msa0011610:intron | 30.0% | |
| GGTATAAACTTAACCTTTAC+TGG | - | chr1_1:17495319-17495338 | Msa0011610:intron | 30.0% | |
| ! | GTGCTAGTTTGACAAAAATA+AGG | + | chr1_1:17495800-17495819 | None:intergenic | 30.0% |
| !! | TATTTTTGTCAAACTAGCAC+CGG | - | chr1_1:17495800-17495819 | Msa0011610:intron | 30.0% |
| AATGAACCTAAATTTCCACA+GGG | + | chr1_1:17496117-17496136 | None:intergenic | 30.0% | |
| TAATGAACCTAAATTTCCAC+AGG | + | chr1_1:17496118-17496137 | None:intergenic | 30.0% | |
| ! | GTATCTTTTCCTACTTGAAA+AGG | - | chr1_1:17496228-17496247 | Msa0011610:intron | 30.0% |
| AAAGATCCTTACCTATTTGA+AGG | + | chr1_1:17496258-17496277 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTGATCACCTCTT+AGG | - | chr1_1:17496322-17496341 | Msa0011610:intron | 30.0% |
| GAAAGAATTGAAGTTTCCAA+TGG | + | chr1_1:17496476-17496495 | None:intergenic | 30.0% | |
| AACATGGCAATATGGGTATT+TGG | - | chr1_1:17491889-17491908 | Msa0011610:three_prime_UTR | 35.0% | |
| GCAATATGGGTATTTGGTTA+CGG | - | chr1_1:17491895-17491914 | Msa0011610:three_prime_UTR | 35.0% | |
| ! | GGTTCTTTGATTTCAAAAGC+TGG | - | chr1_1:17491916-17491935 | Msa0011610:three_prime_UTR | 35.0% |
| !!! | ATCTTCACTGATGGGTTTTT+AGG | - | chr1_1:17492059-17492078 | Msa0011610:three_prime_UTR | 35.0% |
| TTAGGTTCTACTGATCATAG+AGG | - | chr1_1:17492077-17492096 | Msa0011610:three_prime_UTR | 35.0% | |
| !! | TTGCTGATTAAGGTCTTGTT+TGG | - | chr1_1:17492204-17492223 | Msa0011610:intron | 35.0% |
| ! | GACAAGCATTGTTATATGCA+GGG | - | chr1_1:17492322-17492341 | Msa0011610:intron | 35.0% |
| !!! | CCTTTTTCAAGGTGAATAAG+TGG | + | chr1_1:17492371-17492390 | None:intergenic | 35.0% |
| CCACTTATTCACCTTGAAAA+AGG | - | chr1_1:17492368-17492387 | Msa0011610:intron | 35.0% | |
| !! | GCTAGAATTCACCTTTTTCA+AGG | + | chr1_1:17492382-17492401 | None:intergenic | 35.0% |
| ! | AACTACATTTAAGGCTTGTG+TGG | + | chr1_1:17492919-17492938 | None:intergenic | 35.0% |
| TACTTGATTGTCTTGACTGT+AGG | - | chr1_1:17493249-17493268 | Msa0011610:intron | 35.0% | |
| ACTTGATTGTCTTGACTGTA+GGG | - | chr1_1:17493250-17493269 | Msa0011610:intron | 35.0% | |
| ! | GATACTTACTCTGTTTTGCA+AGG | - | chr1_1:17493672-17493691 | Msa0011610:intron | 35.0% |
| !! | CTTTTGACCAAGTTTTGGTA+TGG | - | chr1_1:17493816-17493835 | Msa0011610:intron | 35.0% |
| AAGGGTTCAAACTTTAGCAT+TGG | - | chr1_1:17493863-17493882 | Msa0011610:intron | 35.0% | |
| TACCCAAGAAAGTTCAAACT+TGG | - | chr1_1:17494002-17494021 | Msa0011610:intron | 35.0% | |
| ACCCAAGAAAGTTCAAACTT+GGG | - | chr1_1:17494003-17494022 | Msa0011610:intron | 35.0% | |
| TTAGTCGAATCTCTATCACA+TGG | + | chr1_1:17494140-17494159 | None:intergenic | 35.0% | |
| ! | GATTCGACTAAGTTTTACGT+TGG | - | chr1_1:17494149-17494168 | Msa0011610:intron | 35.0% |
| ATTCTCACATTAGATGGCTT+TGG | + | chr1_1:17494419-17494438 | None:intergenic | 35.0% | |
| CGAAAGATTCTCACATTAGA+TGG | + | chr1_1:17494425-17494444 | None:intergenic | 35.0% | |
| TTCGTCATTTCTACAATAGG+TGG | - | chr1_1:17494441-17494460 | Msa0011610:intron | 35.0% | |
| !! | AGAATGTTATGATGGATGAG+TGG | + | chr1_1:17494530-17494549 | None:intergenic | 35.0% |
| GTCTCAAGGTTTAAGTATCT+TGG | + | chr1_1:17494726-17494745 | None:intergenic | 35.0% | |
| GCTTAAGTAGAGGTAAAAGT+TGG | + | chr1_1:17494764-17494783 | None:intergenic | 35.0% | |
| TTCATCAAACGTCACTATGT+CGG | - | chr1_1:17494847-17494866 | Msa0011610:intron | 35.0% | |
| CATTTGGCCTCAAAAAATCT+TGG | + | chr1_1:17494981-17495000 | None:intergenic | 35.0% | |
| !!! | AGATTTTTTGAGGCCAAATG+AGG | - | chr1_1:17494981-17495000 | Msa0011610:intron | 35.0% |
| TTACATTGACCTTCTTGTCT+GGG | + | chr1_1:17495213-17495232 | None:intergenic | 35.0% | |
| TTTACATTGACCTTCTTGTC+TGG | + | chr1_1:17495214-17495233 | None:intergenic | 35.0% | |
| ACTAATTCATAAGCCTCCTA+AGG | + | chr1_1:17495382-17495401 | None:intergenic | 35.0% | |
| !! | GATTCCTAGACTTTGAAATG+TGG | + | chr1_1:17495508-17495527 | None:intergenic | 35.0% |
| TTCAGCATGATCCTATATCT+AGG | + | chr1_1:17495537-17495556 | None:intergenic | 35.0% | |
| AGACAAAAATGCCATCAATC+AGG | + | chr1_1:17495726-17495745 | None:intergenic | 35.0% | |
| CACACACCTTGTATTCATAA+TGG | + | chr1_1:17495969-17495988 | None:intergenic | 35.0% | |
| CAGTTACAATACATGAACCA+TGG | + | chr1_1:17496083-17496102 | None:intergenic | 35.0% | |
| AGGAAAAGATACTCTCTGTT+AGG | + | chr1_1:17496220-17496239 | None:intergenic | 35.0% | |
| GATCAATAACATGCTTGTCT+TGG | + | chr1_1:17496351-17496370 | None:intergenic | 35.0% | |
| TTGATCTTGCAAATGAAGTC+AGG | - | chr1_1:17496365-17496384 | Msa0011610:CDS | 35.0% | |
| AAGCTATTATGGGGAACTTA+TGG | - | chr1_1:17496664-17496683 | Msa0011610:five_prime_UTR | 35.0% | |
| AGTTCCACAAGTATTTGTGT+CGG | - | chr1_1:17496703-17496722 | Msa0011610:five_prime_UTR | 35.0% | |
| ATAACCAACCACCACAAACA+TGG | - | chr1_1:17491873-17491892 | Msa0011610:three_prime_UTR | 40.0% | |
| CACCACAAACATGGCAATAT+GGG | - | chr1_1:17491882-17491901 | Msa0011610:three_prime_UTR | 40.0% | |
| TACCCATATTGCCATGTTTG+TGG | + | chr1_1:17491887-17491906 | None:intergenic | 40.0% | |
| AACTACGATGAACGTCTTGT+TGG | - | chr1_1:17491943-17491962 | Msa0011610:three_prime_UTR | 40.0% | |
| ACACAAATTTCTCCATCAGC+AGG | + | chr1_1:17492140-17492159 | None:intergenic | 40.0% | |
| !!! | GAGATTTTTTTGTCCTTGGC+AGG | - | chr1_1:17492300-17492319 | Msa0011610:CDS | 40.0% |
| ! | GGACAAGCATTGTTATATGC+AGG | - | chr1_1:17492321-17492340 | Msa0011610:intron | 40.0% |
| !! | GCCGTTTTCATAAGCTATTC+TGG | - | chr1_1:17492777-17492796 | Msa0011610:intron | 40.0% |
| AGTCACACATGTGCTTATGT+CGG | - | chr1_1:17492870-17492889 | Msa0011610:intron | 40.0% | |
| TCTTGGATACACATACTAGG+AGG | + | chr1_1:17492959-17492978 | None:intergenic | 40.0% | |
| ACCAGTTGTCCGATATCAAA+AGG | - | chr1_1:17493211-17493230 | Msa0011610:intron | 40.0% | |
| ! | CGATCTCAGCCTTTTGATAT+CGG | + | chr1_1:17493223-17493242 | None:intergenic | 40.0% |
| TGTCTTGACTGTAGGGAATA+CGG | - | chr1_1:17493257-17493276 | Msa0011610:CDS | 40.0% | |
| ! | TCTGTTTTGCAAGGAGATAG+TGG | - | chr1_1:17493681-17493700 | Msa0011610:intron | 40.0% |
| ! | CTGTTTTGCAAGGAGATAGT+GGG | - | chr1_1:17493682-17493701 | Msa0011610:intron | 40.0% |
| ! | TGTTTTGCAAGGAGATAGTG+GGG | - | chr1_1:17493683-17493702 | Msa0011610:intron | 40.0% |
| !! | CCAAGTTTTGGTATGGAACT+CGG | - | chr1_1:17493823-17493842 | Msa0011610:intron | 40.0% |
| GACACCTTAAACTAGGTCAA+GGG | - | chr1_1:17493845-17493864 | Msa0011610:intron | 40.0% | |
| TGAACCCTTGACCTAGTTTA+AGG | + | chr1_1:17493852-17493871 | None:intergenic | 40.0% | |
| ! | GGTTCAAACTTTAGCATTGG+TGG | - | chr1_1:17493866-17493885 | Msa0011610:intron | 40.0% |
| !! | ACTTTAGCATTGGTGGTGTA+TGG | - | chr1_1:17493873-17493892 | Msa0011610:intron | 40.0% |
| GTGTATGGTGAAACCTGATT+GGG | - | chr1_1:17493888-17493907 | Msa0011610:intron | 40.0% | |
| TAGTCATTGCTAAACTGCAG+TGG | - | chr1_1:17493957-17493976 | Msa0011610:intron | 40.0% | |
| TTTCTTGGGTAACTATGTGC+AGG | + | chr1_1:17493993-17494012 | None:intergenic | 40.0% | |
| CCCCAAGTTTGAACTTTCTT+GGG | + | chr1_1:17494007-17494026 | None:intergenic | 40.0% | |
| CCCAAGAAAGTTCAAACTTG+GGG | - | chr1_1:17494004-17494023 | Msa0011610:intron | 40.0% | |
| CCAAGAAAGTTCAAACTTGG+GGG | - | chr1_1:17494005-17494024 | Msa0011610:intron | 40.0% | |
| CAAGAAAGTTCAAACTTGGG+GGG | - | chr1_1:17494006-17494025 | Msa0011610:intron | 40.0% | |
| ! | CGTGACTTTTGCTTAAGTAG+AGG | + | chr1_1:17494774-17494793 | None:intergenic | 40.0% |
| TGTAATTGCTGCACAGTATC+TGG | - | chr1_1:17494891-17494910 | Msa0011610:intron | 40.0% | |
| GTAATTGCTGCACAGTATCT+GGG | - | chr1_1:17494892-17494911 | Msa0011610:intron | 40.0% | |
| ! | GTTTTCACTGTAAGTGTCAC+AGG | - | chr1_1:17494955-17494974 | Msa0011610:intron | 40.0% |
| !!! | TCACAGGCCAAGATTTTTTG+AGG | - | chr1_1:17494971-17494990 | Msa0011610:intron | 40.0% |
| ACGAAATGATGCACCTCATT+TGG | + | chr1_1:17494997-17495016 | None:intergenic | 40.0% | |
| TACATTGACCTTCTTGTCTG+GGG | + | chr1_1:17495212-17495231 | None:intergenic | 40.0% | |
| GATGCCACATTTCAAAGTCT+AGG | - | chr1_1:17495501-17495520 | Msa0011610:intron | 40.0% | |
| !!! | AATTTTCAAGTGGCGATCCA+AGG | + | chr1_1:17495620-17495639 | None:intergenic | 40.0% |
| ACTCCAATGGTGATTGATGT+CGG | - | chr1_1:17495647-17495666 | Msa0011610:intron | 40.0% | |
| TCGTGAACTTCTACTTCTGA+GGG | + | chr1_1:17495673-17495692 | None:intergenic | 40.0% | |
| CTATCTCGGACATTACAACA+AGG | + | chr1_1:17495700-17495719 | None:intergenic | 40.0% | |
| CATCAATCAGGTCACTATCT+CGG | + | chr1_1:17495714-17495733 | None:intergenic | 40.0% | |
| TCTCCAAAAGCAGAAATCCA+CGG | + | chr1_1:17495861-17495880 | None:intergenic | 40.0% | |
| TGAATGCCCTGTGGAAATTT+AGG | - | chr1_1:17496108-17496127 | Msa0011610:intron | 40.0% | |
| AGGCAAATAGTTCAAGCTGA+AGG | - | chr1_1:17496184-17496203 | Msa0011610:intron | 40.0% | |
| GAAAAGGCTCTCCTTCAAAT+AGG | - | chr1_1:17496244-17496263 | Msa0011610:intron | 40.0% | |
| TGCTAAAGTCTCAGAATGTC+TGG | + | chr1_1:17496438-17496457 | None:intergenic | 40.0% | |
| ATTGCCATGTTTGTGGTGGT+TGG | + | chr1_1:17491880-17491899 | None:intergenic | 45.0% | |
| CCATATTGCCATGTTTGTGG+TGG | + | chr1_1:17491884-17491903 | None:intergenic | 45.0% | |
| CCACCACAAACATGGCAATA+TGG | - | chr1_1:17491881-17491900 | Msa0011610:three_prime_UTR | 45.0% | |
| TATCGACGTGTCTTCTACCA+AGG | - | chr1_1:17491979-17491998 | Msa0011610:three_prime_UTR | 45.0% | |
| ACAGTTCTACCAGGAAACTC+AGG | + | chr1_1:17492107-17492126 | None:intergenic | 45.0% | |
| TCCTGGTAGAACTGTCACAT+TGG | - | chr1_1:17492112-17492131 | Msa0011610:CDS | 45.0% | |
| TCCAATGTGACAGTTCTACC+AGG | + | chr1_1:17492116-17492135 | None:intergenic | 45.0% | |
| TAACAATGCTTGTCCTGCCA+AGG | + | chr1_1:17492316-17492335 | None:intergenic | 45.0% | |
| AGCATTGTTATATGCAGGGC+CGG | - | chr1_1:17492326-17492345 | Msa0011610:intron | 45.0% | |
| ! | GCCTTTTGATATCGGACAAC+TGG | + | chr1_1:17493215-17493234 | None:intergenic | 45.0% |
| CCGAGTTCCATACCAAAACT+TGG | + | chr1_1:17493826-17493845 | None:intergenic | 45.0% | |
| GAACTCGGACACCTTAAACT+AGG | - | chr1_1:17493838-17493857 | Msa0011610:intron | 45.0% | |
| GGACACCTTAAACTAGGTCA+AGG | - | chr1_1:17493844-17493863 | Msa0011610:intron | 45.0% | |
| GGTGTATGGTGAAACCTGAT+TGG | - | chr1_1:17493887-17493906 | Msa0011610:intron | 45.0% | |
| TATGGTGAAACCTGATTGGG+AGG | - | chr1_1:17493891-17493910 | Msa0011610:intron | 45.0% | |
| ATGGTGAAACCTGATTGGGA+GGG | - | chr1_1:17493892-17493911 | Msa0011610:intron | 45.0% | |
| CCCCCAAGTTTGAACTTTCT+TGG | + | chr1_1:17494008-17494027 | None:intergenic | 45.0% | |
| TTTCACTTACACCAATGCCC+CGG | + | chr1_1:17495103-17495122 | None:intergenic | 45.0% | |
| TATAGCATCCCCAGACAAGA+AGG | - | chr1_1:17495201-17495220 | Msa0011610:intron | 45.0% | |
| CGTCTGTTGAAGAGATTGCA+AGG | - | chr1_1:17495248-17495267 | Msa0011610:intron | 45.0% | |
| !!! | GTTTTGGAGATCCTTGCCTT+AGG | - | chr1_1:17495363-17495382 | Msa0011610:intron | 45.0% |
| TTCATAAGCCTCCTAAGGCA+AGG | + | chr1_1:17495377-17495396 | None:intergenic | 45.0% | |
| GTCGTGAACTTCTACTTCTG+AGG | + | chr1_1:17495674-17495693 | None:intergenic | 45.0% | |
| CTCGGACATTACAACAAGGA+GGG | + | chr1_1:17495696-17495715 | None:intergenic | 45.0% | |
| TCTCGGACATTACAACAAGG+AGG | + | chr1_1:17495697-17495716 | None:intergenic | 45.0% | |
| CGAGATAGTGACCTGATTGA+TGG | - | chr1_1:17495712-17495731 | Msa0011610:intron | 45.0% | |
| !! | TTGTCAAACTAGCACCGGTT+TGG | - | chr1_1:17495805-17495824 | Msa0011610:intron | 45.0% |
| AACTGAGACGATGACCAAAC+CGG | + | chr1_1:17495822-17495841 | None:intergenic | 45.0% | |
| GTCTCAGTTGTGAGGACAAA+GGG | - | chr1_1:17495833-17495852 | Msa0011610:intron | 45.0% | |
| TCTCAGTTGTGAGGACAAAG+GGG | - | chr1_1:17495834-17495853 | Msa0011610:intron | 45.0% | |
| CAAGGTGTGTGATCTCGTTA+TGG | - | chr1_1:17495978-17495997 | Msa0011610:intron | 45.0% | |
| GTGATCTCGTTATGGACACA+CGG | - | chr1_1:17495986-17496005 | Msa0011610:intron | 45.0% | |
| TGAACCATGGCAAGTTCTAC+TGG | + | chr1_1:17496070-17496089 | None:intergenic | 45.0% | |
| !! | ACTGTGTTTTGAATGCCCTG+TGG | - | chr1_1:17496099-17496118 | Msa0011610:intron | 45.0% |
| TACTCTCTGTTAGGTCCTGT+GGG | + | chr1_1:17496211-17496230 | None:intergenic | 45.0% | |
| ATACTCTCTGTTAGGTCCTG+TGG | + | chr1_1:17496212-17496231 | None:intergenic | 45.0% | |
| !!! | GAAGGAGAGCCTTTTCAAGT+AGG | + | chr1_1:17496240-17496259 | None:intergenic | 45.0% |
| GGCTCTCCTTCAAATAGGTA+AGG | - | chr1_1:17496249-17496268 | Msa0011610:intron | 45.0% | |
| CCTACCGACACAAATACTTG+TGG | + | chr1_1:17496710-17496729 | None:intergenic | 45.0% | |
| ! | CCACAAGTATTTGTGTCGGT+AGG | - | chr1_1:17496707-17496726 | Msa0011610:five_prime_UTR | 45.0% |
| AGAGGAACACCTGAGTTTCC+TGG | - | chr1_1:17492095-17492114 | Msa0011610:exon | 50.0% | |
| GTCACATTGGAACCTGCTGA+TGG | - | chr1_1:17492125-17492144 | Msa0011610:CDS | 50.0% | |
| GCATTGTTATATGCAGGGCC+GGG | - | chr1_1:17492327-17492346 | Msa0011610:intron | 50.0% | |
| CATTGTTATATGCAGGGCCG+GGG | - | chr1_1:17492328-17492347 | Msa0011610:intron | 50.0% | |
| ! | AGGTGAATAAGTGGGGTGTC+CGG | + | chr1_1:17492362-17492381 | None:intergenic | 50.0% |
| TGAGTTCTACCCTCCCAATC+AGG | + | chr1_1:17493904-17493923 | None:intergenic | 50.0% | |
| ACCTCTAGTGGTCGCATACT+AGG | + | chr1_1:17494185-17494204 | None:intergenic | 50.0% | |
| AGTATGCGACCACTAGAGGT+AGG | - | chr1_1:17494185-17494204 | Msa0011610:intron | 50.0% | |
| GTATGCGACCACTAGAGGTA+GGG | - | chr1_1:17494186-17494205 | Msa0011610:intron | 50.0% | |
| TATGCGACCACTAGAGGTAG+GGG | - | chr1_1:17494187-17494206 | Msa0011610:intron | 50.0% | |
| TGCGGGAGAAGCAATACGAT+CGG | - | chr1_1:17494917-17494936 | Msa0011610:intron | 50.0% | |
| GGAGAAGCAATACGATCGGA+AGG | - | chr1_1:17494921-17494940 | Msa0011610:intron | 50.0% | |
| ! | GCTACAACGCCAGCTATTTC+CGG | - | chr1_1:17495081-17495100 | Msa0011610:intron | 50.0% |
| ! | CTACAACGCCAGCTATTTCC+GGG | - | chr1_1:17495082-17495101 | Msa0011610:intron | 50.0% |
| ! | TACAACGCCAGCTATTTCCG+GGG | - | chr1_1:17495083-17495102 | Msa0011610:intron | 50.0% |
| GCAATCTCTTCAACAGACGC+AGG | + | chr1_1:17495247-17495266 | None:intergenic | 50.0% | |
| TTGGAGATCCTTGCCTTAGG+AGG | - | chr1_1:17495366-17495385 | Msa0011610:intron | 50.0% | |
| TGGTTCACGAGCAAGTTCCA+CGG | - | chr1_1:17495586-17495605 | Msa0011610:intron | 50.0% | |
| TGGTCATCGTCTCAGTTGTG+AGG | - | chr1_1:17495825-17495844 | Msa0011610:intron | 50.0% | |
| CGTCTCAGTTGTGAGGACAA+AGG | - | chr1_1:17495832-17495851 | Msa0011610:intron | 50.0% | |
| ! | GGACCGTGGATTTCTGCTTT+TGG | - | chr1_1:17495855-17495874 | Msa0011610:intron | 50.0% |
| CCATGGCAAGTTCTACTGGT+GGG | + | chr1_1:17496066-17496085 | None:intergenic | 50.0% | |
| ACCATGGCAAGTTCTACTGG+TGG | + | chr1_1:17496067-17496086 | None:intergenic | 50.0% | |
| GCTTGTCTTGGCATCCTAAG+AGG | + | chr1_1:17496339-17496358 | None:intergenic | 50.0% | |
| ! | GGTGAATAAGTGGGGTGTCC+GGG | + | chr1_1:17492361-17492380 | None:intergenic | 55.0% |
| GTAGGGAATACGGACCGTGT+AGG | - | chr1_1:17493267-17493286 | Msa0011610:CDS | 55.0% | |
| GCCTAGTATGCGACCACTAG+AGG | - | chr1_1:17494181-17494200 | Msa0011610:intron | 55.0% | |
| ATGCGACCACTAGAGGTAGG+GGG | - | chr1_1:17494188-17494207 | Msa0011610:intron | 55.0% | |
| CTGCACAGTATCTGGGAGTG+CGG | - | chr1_1:17494899-17494918 | Msa0011610:intron | 55.0% | |
| ! | TGCACAGTATCTGGGAGTGC+GGG | - | chr1_1:17494900-17494919 | Msa0011610:intron | 55.0% |
| ACCAATGCCCCGGAAATAGC+TGG | + | chr1_1:17495093-17495112 | None:intergenic | 55.0% | |
| TTCACGAGCAAGTTCCACGG+TGG | - | chr1_1:17495589-17495608 | Msa0011610:intron | 55.0% | |
| GTTCCACGGTGGTATCACCT+TGG | - | chr1_1:17495600-17495619 | Msa0011610:intron | 55.0% | |
| GATCCAAGGTGATACCACCG+TGG | + | chr1_1:17495606-17495625 | None:intergenic | 55.0% | |
| GGGCCGACATCAATCACCAT+TGG | + | chr1_1:17495653-17495672 | None:intergenic | 55.0% | |
| TGGCAAGTTCTACTGGTGGG+TGG | + | chr1_1:17496063-17496082 | None:intergenic | 55.0% | |
| CCCACCAGTAGAACTTGCCA+TGG | - | chr1_1:17496063-17496082 | Msa0011610:intron | 55.0% | |
| GTTCAAGCTGAAGGTCCCAC+AGG | - | chr1_1:17496193-17496212 | Msa0011610:intron | 55.0% | |
| AGGTCTCCCCCTACCTCTAG+TGG | + | chr1_1:17494197-17494216 | None:intergenic | 60.0% | |
| ! | GCCAGCTATTTCCGGGGCAT+TGG | - | chr1_1:17495089-17495108 | Msa0011610:intron | 60.0% |
| TGTGAGGACAAAGGGGACCG+TGG | - | chr1_1:17495841-17495860 | Msa0011610:intron | 60.0% | |
| GGTGTCCGGGATTCGAACCC+CGG | + | chr1_1:17492348-17492367 | None:intergenic | 65.0% | |
| CAGGGCCGGGGTTCGAATCC+CGG | - | chr1_1:17492340-17492359 | Msa0011610:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 17491777 | 17496745 | 17491777 | ID=Msa0011610;Name=Msa0011610 |
| chr1_1 | mRNA | 17491777 | 17496745 | 17491777 | ID=Msa0011610-mRNA-1;Parent=Msa0011610;Name=Msa0011610-mRNA-1;_AED=0.10;_eAED=0.10;_QI=115|1|1|1|0.71|0.87|8|334|185 |
| chr1_1 | exon | 17491777 | 17492178 | 17491777 | ID=Msa0011610-mRNA-1:exon:6401;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17492257 | 17492336 | 17492257 | ID=Msa0011610-mRNA-1:exon:6400;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17493253 | 17493324 | 17493253 | ID=Msa0011610-mRNA-1:exon:6399;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17493410 | 17493450 | 17493410 | ID=Msa0011610-mRNA-1:exon:6398;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17493559 | 17493615 | 17493559 | ID=Msa0011610-mRNA-1:exon:6397;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17494768 | 17494821 | 17494768 | ID=Msa0011610-mRNA-1:exon:6396;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17496365 | 17496441 | 17496365 | ID=Msa0011610-mRNA-1:exon:6395;Parent=Msa0011610-mRNA-1 |
| chr1_1 | exon | 17496522 | 17496745 | 17496522 | ID=Msa0011610-mRNA-1:exon:6394;Parent=Msa0011610-mRNA-1 |
| chr1_1 | five_prime_UTR | 17496631 | 17496745 | 17496631 | ID=Msa0011610-mRNA-1:five_prime_utr;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17496522 | 17496630 | 17496522 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17496365 | 17496441 | 17496365 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17494768 | 17494821 | 17494768 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17493559 | 17493615 | 17493559 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17493410 | 17493450 | 17493410 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17493253 | 17493324 | 17493253 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17492257 | 17492336 | 17492257 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | CDS | 17492111 | 17492178 | 17492111 | ID=Msa0011610-mRNA-1:cds;Parent=Msa0011610-mRNA-1 |
| chr1_1 | three_prime_UTR | 17491777 | 17492110 | 17491777 | ID=Msa0011610-mRNA-1:three_prime_utr;Parent=Msa0011610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
