AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162470 MtrunA17_Chr7g0258361 98.718 234 3 0 1 234 1 234 2.19e-175 481
Msa1162470 MtrunA17_Chr4g0006411 34.177 158 102 2 39 194 50 207 2.89e-25 99.0
Msa1162470 MtrunA17_Chr3g0116671 26.596 188 134 1 17 200 52 239 3.74e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162470 AT2G42220.1 64.286 224 76 1 4 227 10 229 2.20e-107 309
Msa1162470 AT3G08920.1 36.478 159 99 2 39 195 37 195 2.92e-29 109
Msa1162470 AT4G24750.1 29.747 158 109 2 44 200 85 241 3.08e-17 79.3

Find 64 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATGCATGCTACATTT+TGG 0.221380 7_4:+53167084 None:intergenic
CTGTAGGTACAATCTTATTA+AGG 0.285743 7_4:-53168323 Msa1162470:intron
ACAATCAAGAGTTTAGTTTC+AGG 0.345374 7_4:+53168207 None:intergenic
TAAACTCTTGATTGTTTGTC+AGG 0.363215 7_4:-53168199 Msa1162470:CDS
TTCACGGATTGTACGAAATC+AGG 0.363278 7_4:+53168243 None:intergenic
GGAAAGAGATAATGTTAGTA+TGG 0.376907 7_4:-53166581 Msa1162470:three_prime_UTR
AAGGAACTTGTAAAAGTAGA+TGG 0.379059 7_4:-53168795 Msa1162470:CDS
CTGATCCAACTGGTCCCTTC+AGG 0.389584 7_4:-53166723 Msa1162470:CDS
ATCAGCTTCTCTGCTTGATC+AGG 0.390870 7_4:+53166741 None:intergenic
CACAATGCAAGGAGCATGCC+AGG 0.391332 7_4:-53168897 Msa1162470:CDS
GACATCTTAAACATTTAAAT+CGG 0.392368 7_4:+53166451 None:intergenic
GATTGTACGAAATCAGGATT+TGG 0.406296 7_4:+53168249 None:intergenic
GAATGCTGGCAAAGCTGGTT+TGG 0.410102 7_4:-53166914 Msa1162470:CDS
TGCAGCAGCAAATAAGTTAG+AGG 0.420677 7_4:-53167117 Msa1162470:CDS
TTGCAGAATGCTGGCAAAGC+TGG 0.432034 7_4:-53166919 Msa1162470:CDS
TGTTGATGTGAATGAGGTTA+TGG 0.432320 7_4:-53166607 Msa1162470:three_prime_UTR
AAAGACGAAGACTATGTAAC+TGG 0.434272 7_4:+53166348 None:intergenic
CTCTTGATTGTTTGTCAGGA+AGG 0.443131 7_4:-53168195 Msa1162470:CDS
GTAGGGACATTTGAATCTGT+TGG 0.448414 7_4:-53166952 Msa1162470:intron
AATGTAGCATGCATAACATC+TGG 0.456689 7_4:-53167080 Msa1162470:CDS
CATTGAGATACTAGCTTCCC+TGG 0.458379 7_4:+53168879 None:intergenic
AGGCTGTATTTGACTCTTCA+CGG 0.462274 7_4:+53168227 None:intergenic
TCGACGGAGTTGCAGAATGC+TGG 0.475813 7_4:-53166928 Msa1162470:CDS
ACACACATTCTCACAATGGC+AGG 0.476693 7_4:-53169123 Msa1162470:exon
AGCAGAGAAGCTGATCCAAC+TGG 0.489566 7_4:-53166733 Msa1162470:CDS
TGGTTCTTCAATACGGTACA+TGG 0.489773 7_4:+53166368 None:intergenic
AGACTAAAAGTTCCATCGAT+TGG 0.490628 7_4:-53166697 Msa1162470:three_prime_UTR
TTCAAACACCGTACGTTGCT+AGG 0.497811 7_4:-53166411 Msa1162470:three_prime_UTR
TAATGTTAGTATGGCTATCA+TGG 0.501704 7_4:-53166572 Msa1162470:three_prime_UTR
GCAAATAAGTTAGAGGATGC+TGG 0.503197 7_4:-53167110 Msa1162470:CDS
TCAGCAACTTAGGGAGATGT+TGG 0.512330 7_4:-53168935 Msa1162470:intron
TCAGGATTTGGCCTAGTGAA+TGG 0.518571 7_4:+53168261 None:intergenic
GATAAGGAGTTACCAGGAGG+TGG 0.526098 7_4:+53169089 None:intergenic
GAAAATACAGACAATGATCC+TGG 0.526626 7_4:-53168690 Msa1162470:intron
CTCTGCTTGATCAGGAAAGA+AGG 0.530924 7_4:+53166749 None:intergenic
AAGTAAATTACCACCGCAGT+GGG 0.535368 7_4:+53166530 None:intergenic
GGACTGCTTTCTCCACCTCC+TGG 0.538119 7_4:-53169101 Msa1162470:intron
CAACTTAGGGAGATGTTGGT+TGG 0.543322 7_4:-53168931 Msa1162470:CDS
TTGTTTGTCAGGAAGGATTG+AGG 0.546160 7_4:-53168188 Msa1162470:intron
GAAATGTGAGACTAGAATTG+AGG 0.547284 7_4:-53166642 Msa1162470:three_prime_UTR
ATGTAACTGGTTCTTCAATA+CGG 0.551827 7_4:+53166361 None:intergenic
ATTTGAATCTGTTGGCTCGA+CGG 0.558341 7_4:-53166944 Msa1162470:CDS
CTTAGCCTGAAGGGACCAGT+TGG 0.559659 7_4:+53166718 None:intergenic
TCTTCGGGATACCATTCACT+AGG 0.560518 7_4:-53168272 Msa1162470:CDS
TGTAACAGCTGATGATGCTA+AGG 0.563299 7_4:-53168814 Msa1162470:CDS
ATGTAACATGCATTATGTGA+GGG 0.566321 7_4:+53166666 None:intergenic
GCTGGTTTGGTGCAAATCCA+AGG 0.574370 7_4:-53166901 Msa1162470:CDS
TATCTCAATGTAAAATGAGA+AGG 0.578861 7_4:-53168866 Msa1162470:CDS
AAAACATGTTGATGTGAATG+AGG 0.582219 7_4:-53166613 Msa1162470:three_prime_UTR
TATGTAACATGCATTATGTG+AGG 0.589318 7_4:+53166665 None:intergenic
AGGGGAAAACAACCAATCGA+TGG 0.613928 7_4:+53166685 None:intergenic
CAAATTGTCCTAGCAACGTA+CGG 0.615298 7_4:+53166403 None:intergenic
GATATAATGTTCTTGATGTG+AGG 0.619269 7_4:-53168773 Msa1162470:CDS
GGACTTCAAACTGTGAAACC+AGG 0.620690 7_4:-53167059 Msa1162470:intron
ATGTGAATGAGGTTATGGAA+TGG 0.634776 7_4:-53166602 Msa1162470:three_prime_UTR
ATATAATGTTCTTGATGTGA+GGG 0.640539 7_4:-53168772 Msa1162470:CDS
ACAATGCAAGGAGCATGCCA+GGG 0.648008 7_4:-53168896 Msa1162470:CDS
TGTAACATGCATTATGTGAG+GGG 0.651984 7_4:+53166667 None:intergenic
CACACATTCTCACAATGGCA+GGG 0.653331 7_4:-53169122 Msa1162470:exon
AAAGTAAATTACCACCGCAG+TGG 0.672430 7_4:+53166529 None:intergenic
GATTGTCTACCCCACTGCGG+TGG 0.682203 7_4:-53166540 Msa1162470:three_prime_UTR
ACAAACACACATTCTCACAA+TGG 0.693697 7_4:-53169127 Msa1162470:exon
AGTAAATTACCACCGCAGTG+GGG 0.773412 7_4:+53166531 None:intergenic
CTAGATTGTCTACCCCACTG+CGG 0.792117 7_4:-53166543 Msa1162470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTCTTAAAAGGTAAA+CGG + chr7_4:53168468-53168487 None:intergenic 15.0%
!! GAAAATTCAAAGTTAAGATA+AGG + chr7_4:53166389-53166408 None:intergenic 20.0%
!!! ATAGTATAAATAGTTTTGGA+AGG + chr7_4:53166807-53166826 None:intergenic 20.0%
!!! ATGCATAGTATAAATAGTTT+TGG + chr7_4:53166811-53166830 None:intergenic 20.0%
!!! CATTTTAGTTTTGAAATTGT+AGG - chr7_4:53166855-53166874 Msa1162470:intron 20.0%
!!! CAAACATTTTGAAATAATTC+TGG - chr7_4:53166906-53166925 Msa1162470:CDS 20.0%
!! ATATAATTAGCAATCAAAGA+GGG + chr7_4:53167315-53167334 None:intergenic 20.0%
!! TATATAATTAGCAATCAAAG+AGG + chr7_4:53167316-53167335 None:intergenic 20.0%
!! AATTCTCAATATTAGGTATT+AGG + chr7_4:53167500-53167519 None:intergenic 20.0%
!!! TATTTTCTTCATTCGATAAA+CGG + chr7_4:53167763-53167782 None:intergenic 20.0%
!! TTAAAATTTATCCATTCTGT+AGG - chr7_4:53168489-53168508 Msa1162470:intron 20.0%
!! TAAAATTTATCCATTCTGTA+GGG - chr7_4:53168490-53168509 Msa1162470:intron 20.0%
!!! TTCTGTTTTATGAAATTTTC+AGG - chr7_4:53168670-53168689 Msa1162470:intron 20.0%
!! GACATCTTAAACATTTAAAT+CGG + chr7_4:53169011-53169030 None:intergenic 20.0%
! AACATGATTATGAGTGATTA+AGG - chr7_4:53166493-53166512 Msa1162470:three_prime_UTR 25.0%
! TATCTCAATGTAAAATGAGA+AGG - chr7_4:53166593-53166612 Msa1162470:three_prime_UTR 25.0%
! ATATAATGTTCTTGATGTGA+GGG - chr7_4:53166687-53166706 Msa1162470:three_prime_UTR 25.0%
!! CTGTATTTTCAACAAAAAGA+GGG + chr7_4:53166759-53166778 None:intergenic 25.0%
!! TCTGTATTTTCAACAAAAAG+AGG + chr7_4:53166760-53166779 None:intergenic 25.0%
! TTTAGATTGTACATAATGAC+TGG + chr7_4:53167446-53167465 None:intergenic 25.0%
! AAAAAGAGAAACATAGATGA+AGG - chr7_4:53167464-53167483 Msa1162470:intron 25.0%
! GTTTCTCAATTCTCAATATT+AGG + chr7_4:53167507-53167526 None:intergenic 25.0%
! ATATTGAGAATTGAGAAACA+TGG - chr7_4:53167508-53167527 Msa1162470:intron 25.0%
! TATTGAGAATTGAGAAACAT+GGG - chr7_4:53167509-53167528 Msa1162470:intron 25.0%
! AAATAGGTAAAACACATAGT+AGG - chr7_4:53167598-53167617 Msa1162470:intron 25.0%
! AAGCCAATTGTTATAATACA+AGG - chr7_4:53167782-53167801 Msa1162470:intron 25.0%
! TCTCCTTGTATTATAACAAT+TGG + chr7_4:53167788-53167807 None:intergenic 25.0%
! GTCATGTGTAAAAAAAAACA+GGG + chr7_4:53168026-53168045 None:intergenic 25.0%
! TGTCATGTGTAAAAAAAAAC+AGG + chr7_4:53168027-53168046 None:intergenic 25.0%
!! TAATAAATGTCCTTTTGTGA+GGG + chr7_4:53168077-53168096 None:intergenic 25.0%
!! ATAATAAATGTCCTTTTGTG+AGG + chr7_4:53168078-53168097 None:intergenic 25.0%
!! TAATTTTTCCTTCTTTGTCA+AGG - chr7_4:53168314-53168333 Msa1162470:CDS 25.0%
! AATCAATGATTAACTAAACC+TGG + chr7_4:53168421-53168440 None:intergenic 25.0%
!!! AAAGACATTGTTTTGCTTAA+TGG + chr7_4:53168956-53168975 None:intergenic 25.0%
TAGTAAAAACTCACAATGCA+AGG - chr7_4:53166551-53166570 Msa1162470:three_prime_UTR 30.0%
AAGGAACTTGTAAAAGTAGA+TGG - chr7_4:53166664-53166683 Msa1162470:three_prime_UTR 30.0%
GATATAATGTTCTTGATGTG+AGG - chr7_4:53166686-53166705 Msa1162470:three_prime_UTR 30.0%
!! TGGAGGGATAAATGTTTTTA+AGG + chr7_4:53166942-53166961 None:intergenic 30.0%
TTAAAAACATTTATCCCTCC+AGG - chr7_4:53166941-53166960 Msa1162470:CDS 30.0%
!! AAATGGACTAATGTGATGAA+GGG - chr7_4:53166984-53167003 Msa1162470:intron 30.0%
! TTTTAGTCCTGGAAATTGTA+GGG + chr7_4:53167056-53167075 None:intergenic 30.0%
!! ATTTTAGTCCTGGAAATTGT+AGG + chr7_4:53167057-53167076 None:intergenic 30.0%
CAATTTCCAGGACTAAAATA+TGG - chr7_4:53167058-53167077 Msa1162470:intron 30.0%
!!! ATGAATCCATATTTTAGTCC+TGG + chr7_4:53167067-53167086 None:intergenic 30.0%
!!! CATTTGCATTGATTTTCTGT+AGG - chr7_4:53167120-53167139 Msa1162470:CDS 30.0%
CTGTAGGTACAATCTTATTA+AGG - chr7_4:53167136-53167155 Msa1162470:intron 30.0%
! ACAGTGCACAATAATTTTTC+TGG - chr7_4:53167159-53167178 Msa1162470:intron 30.0%
! CAGTGCACAATAATTTTTCT+GGG - chr7_4:53167160-53167179 Msa1162470:intron 30.0%
! AATTTTTCTGGGTTGTTCTT+CGG - chr7_4:53167171-53167190 Msa1162470:intron 30.0%
! ACAATCAAGAGTTTAGTTTC+AGG + chr7_4:53167255-53167274 None:intergenic 30.0%
TAAACTCTTGATTGTTTGTC+AGG - chr7_4:53167260-53167279 Msa1162470:intron 30.0%
AGAGCATATGATCATGTTTA+TGG + chr7_4:53167550-53167569 None:intergenic 30.0%
! ATTTGTCTCTTTTAGACTCT+TGG + chr7_4:53167582-53167601 None:intergenic 30.0%
AGAGTCTAAAAGAGACAAAT+AGG - chr7_4:53167582-53167601 Msa1162470:intron 30.0%
GTGTAAAAAAAAACAGGGTA+AGG + chr7_4:53168021-53168040 None:intergenic 30.0%
! AATAAATGTCCTTTTGTGAG+GGG + chr7_4:53168076-53168095 None:intergenic 30.0%
TAGCAAGAACACAGAAATTT+AGG - chr7_4:53168167-53168186 Msa1162470:intron 30.0%
! TAGGAATTTTATGCTTCTTG+TGG + chr7_4:53168240-53168259 None:intergenic 30.0%
! TTCAAGTTATGCAAATTCGT+AGG + chr7_4:53168259-53168278 None:intergenic 30.0%
! ATGTTATGCATGCTACATTT+TGG + chr7_4:53168378-53168397 None:intergenic 30.0%
ATGTAACATGCATTATGTGA+GGG + chr7_4:53168796-53168815 None:intergenic 30.0%
TATGTAACATGCATTATGTG+AGG + chr7_4:53168797-53168816 None:intergenic 30.0%
AAAACATGTTGATGTGAATG+AGG - chr7_4:53168846-53168865 Msa1162470:CDS 30.0%
GGAAAGAGATAATGTTAGTA+TGG - chr7_4:53168878-53168897 Msa1162470:CDS 30.0%
TAATGTTAGTATGGCTATCA+TGG - chr7_4:53168887-53168906 Msa1162470:CDS 30.0%
! ATGTAACTGGTTCTTCAATA+CGG + chr7_4:53169101-53169120 None:intergenic 30.0%
ACAAACACACATTCTCACAA+TGG - chr7_4:53166332-53166351 Msa1162470:three_prime_UTR 35.0%
AGTTAAGATAAGGAGTTACC+AGG + chr7_4:53166379-53166398 None:intergenic 35.0%
! GTTGTGTTTTCAGCAACTTA+GGG - chr7_4:53166515-53166534 Msa1162470:three_prime_UTR 35.0%
GAAAATACAGACAATGATCC+TGG - chr7_4:53166769-53166788 Msa1162470:CDS 35.0%
ATTTCAATGACCCATCCAAA+TGG - chr7_4:53166967-53166986 Msa1162470:intron 35.0%
TCACATTAGTCCATTTGGAT+GGG + chr7_4:53166980-53166999 None:intergenic 35.0%
ATCACATTAGTCCATTTGGA+TGG + chr7_4:53166981-53167000 None:intergenic 35.0%
CTTCATCACATTAGTCCATT+TGG + chr7_4:53166985-53167004 None:intergenic 35.0%
!! CAAATGGACTAATGTGATGA+AGG - chr7_4:53166983-53167002 Msa1162470:intron 35.0%
ATTTCATCCCTACAATTTCC+AGG - chr7_4:53167046-53167065 Msa1162470:intron 35.0%
! ATTTTTCTGGGTTGTTCTTC+GGG - chr7_4:53167172-53167191 Msa1162470:intron 35.0%
GATTGTACGAAATCAGGATT+TGG + chr7_4:53167213-53167232 None:intergenic 35.0%
AATTAGCAATCAAAGAGGGT+AGG + chr7_4:53167311-53167330 None:intergenic 35.0%
TGGGTTCTTCATGAAAGTTT+GGG + chr7_4:53167340-53167359 None:intergenic 35.0%
TTGGGTTCTTCATGAAAGTT+TGG + chr7_4:53167341-53167360 None:intergenic 35.0%
ATAATGACTGGTGTAGTACT+TGG + chr7_4:53167434-53167453 None:intergenic 35.0%
TAGTAGGATTACCAGAATGT+AGG - chr7_4:53167614-53167633 Msa1162470:intron 35.0%
ATGATACCCATAACCCAAAT+AGG - chr7_4:53167832-53167851 Msa1162470:intron 35.0%
! TTCTGTCCTATTTGGGTTAT+GGG + chr7_4:53167841-53167860 None:intergenic 35.0%
CGTATAATACACCAAATGGT+GGG + chr7_4:53167995-53168014 None:intergenic 35.0%
GATGCGTATAATACACCAAA+TGG + chr7_4:53167999-53168018 None:intergenic 35.0%
! ATAAATGTCCTTTTGTGAGG+GGG + chr7_4:53168075-53168094 None:intergenic 35.0%
! GTGTTCTTGCTATGTATTTC+AGG + chr7_4:53168159-53168178 None:intergenic 35.0%
ACAGAAATTTAGGCATGAGT+GGG - chr7_4:53168177-53168196 Msa1162470:intron 35.0%
AATCTCCAGATTACATCTCA+AGG + chr7_4:53168294-53168313 None:intergenic 35.0%
AATGTAGCATGCATAACATC+TGG - chr7_4:53168379-53168398 Msa1162470:intron 35.0%
ATTCAAATGTCCCTACAGAA+TGG + chr7_4:53168503-53168522 None:intergenic 35.0%
! ACACAGCTGAAATTTTTCCT+TGG + chr7_4:53168578-53168597 None:intergenic 35.0%
AGGAAAAATTTCAGCTGTGT+TGG - chr7_4:53168578-53168597 Msa1162470:intron 35.0%
GGAAAAATTTCAGCTGTGTT+GGG - chr7_4:53168579-53168598 Msa1162470:intron 35.0%
!!! ACTTTTAGTCTTAGCCTGAA+GGG + chr7_4:53168753-53168772 None:intergenic 35.0%
!!! AACTTTTAGTCTTAGCCTGA+AGG + chr7_4:53168754-53168773 None:intergenic 35.0%
AGACTAAAAGTTCCATCGAT+TGG - chr7_4:53168762-53168781 Msa1162470:CDS 35.0%
TGTAACATGCATTATGTGAG+GGG + chr7_4:53168795-53168814 None:intergenic 35.0%
GAAATGTGAGACTAGAATTG+AGG - chr7_4:53168817-53168836 Msa1162470:CDS 35.0%
TGTTGATGTGAATGAGGTTA+TGG - chr7_4:53168852-53168871 Msa1162470:CDS 35.0%
ATGTGAATGAGGTTATGGAA+TGG - chr7_4:53168857-53168876 Msa1162470:CDS 35.0%
AAAGACGAAGACTATGTAAC+TGG + chr7_4:53169114-53169133 None:intergenic 35.0%
TAAGATAAGGAGTTACCAGG+AGG + chr7_4:53166376-53166395 None:intergenic 40.0%
! GGTTGTGTTTTCAGCAACTT+AGG - chr7_4:53166514-53166533 Msa1162470:three_prime_UTR 40.0%
! TGTAACAGCTGATGATGCTA+AGG - chr7_4:53166645-53166664 Msa1162470:three_prime_UTR 40.0%
TACAGACAATGATCCTGGTA+TGG - chr7_4:53166774-53166793 Msa1162470:intron 40.0%
GTCATTGAAATTGTCCTGGA+GGG + chr7_4:53166958-53166977 None:intergenic 40.0%
ATGGGTCATTGAAATTGTCC+TGG + chr7_4:53166962-53166981 None:intergenic 40.0%
! TTCACGGATTGTACGAAATC+AGG + chr7_4:53167219-53167238 None:intergenic 40.0%
AGGCTGTATTTGACTCTTCA+CGG + chr7_4:53167235-53167254 None:intergenic 40.0%
CTCTTGATTGTTTGTCAGGA+AGG - chr7_4:53167264-53167283 Msa1162470:intron 40.0%
TTGTTTGTCAGGAAGGATTG+AGG - chr7_4:53167271-53167290 Msa1162470:intron 40.0%
AACCAAACCAAAGCAGAGTT+GGG + chr7_4:53167359-53167378 None:intergenic 40.0%
TAACCAAACCAAAGCAGAGT+TGG + chr7_4:53167360-53167379 None:intergenic 40.0%
GATTACCAGAATGTAGGCAA+TGG - chr7_4:53167620-53167639 Msa1162470:intron 40.0%
! GTTCTGTCCTATTTGGGTTA+TGG + chr7_4:53167842-53167861 None:intergenic 40.0%
GCGTATAATACACCAAATGG+TGG + chr7_4:53167996-53168015 None:intergenic 40.0%
! TAAATGTCCTTTTGTGAGGG+GGG + chr7_4:53168074-53168093 None:intergenic 40.0%
ACCCAAAAACTAAACACCTC+AGG - chr7_4:53168100-53168119 Msa1162470:intron 40.0%
!!! GCCTGAGGTGTTTAGTTTTT+GGG + chr7_4:53168104-53168123 None:intergenic 40.0%
TATTTCAGGATAGACCTTGC+CGG + chr7_4:53168145-53168164 None:intergenic 40.0%
CACAGAAATTTAGGCATGAG+TGG - chr7_4:53168176-53168195 Msa1162470:intron 40.0%
TGTTGCCTTGAGATGTAATC+TGG - chr7_4:53168286-53168305 Msa1162470:CDS 40.0%
TGCAGCAGCAAATAAGTTAG+AGG - chr7_4:53168342-53168361 Msa1162470:intron 40.0%
GCAAATAAGTTAGAGGATGC+TGG - chr7_4:53168349-53168368 Msa1162470:intron 40.0%
GTAGGGACATTTGAATCTGT+TGG - chr7_4:53168507-53168526 Msa1162470:intron 40.0%
!! ATTTGAATCTGTTGGCTCGA+CGG - chr7_4:53168515-53168534 Msa1162470:intron 40.0%
AAGTAAATTACCACCGCAGT+GGG + chr7_4:53168932-53168951 None:intergenic 40.0%
AAAGTAAATTACCACCGCAG+TGG + chr7_4:53168933-53168952 None:intergenic 40.0%
CAAATTGTCCTAGCAACGTA+CGG + chr7_4:53169059-53169078 None:intergenic 40.0%
TGGTTCTTCAATACGGTACA+TGG + chr7_4:53169094-53169113 None:intergenic 40.0%
ACACACATTCTCACAATGGC+AGG - chr7_4:53166336-53166355 Msa1162470:three_prime_UTR 45.0%
CACACATTCTCACAATGGCA+GGG - chr7_4:53166337-53166356 Msa1162470:three_prime_UTR 45.0%
TCAGCAACTTAGGGAGATGT+TGG - chr7_4:53166524-53166543 Msa1162470:three_prime_UTR 45.0%
CAACTTAGGGAGATGTTGGT+TGG - chr7_4:53166528-53166547 Msa1162470:three_prime_UTR 45.0%
! CATTGAGATACTAGCTTCCC+TGG + chr7_4:53166583-53166602 None:intergenic 45.0%
GGAAGGAGAAATTCCATACC+AGG + chr7_4:53166790-53166809 None:intergenic 45.0%
GGTCATTGAAATTGTCCTGG+AGG + chr7_4:53166959-53166978 None:intergenic 45.0%
TCTTCGGGATACCATTCACT+AGG - chr7_4:53167187-53167206 Msa1162470:intron 45.0%
TCAGGATTTGGCCTAGTGAA+TGG + chr7_4:53167201-53167220 None:intergenic 45.0%
TGAAGAACCCAACTCTGCTT+TGG - chr7_4:53167349-53167368 Msa1162470:intron 45.0%
AACCCAACTCTGCTTTGGTT+TGG - chr7_4:53167354-53167373 Msa1162470:intron 45.0%
CTCATCCATTGCCTACATTC+TGG + chr7_4:53167628-53167647 None:intergenic 45.0%
CAGAATGTAGGCAATGGATG+AGG - chr7_4:53167626-53167645 Msa1162470:intron 45.0%
! CAAGCAGTCAGGTACTGTAT+CGG + chr7_4:53167688-53167707 None:intergenic 45.0%
ATCTCCATCATCCACTGCAA+AGG + chr7_4:53167739-53167758 None:intergenic 45.0%
GGGTATCATCCTCGGATATT+GGG + chr7_4:53167821-53167840 None:intergenic 45.0%
TGGGTATCATCCTCGGATAT+TGG + chr7_4:53167822-53167841 None:intergenic 45.0%
TGGGTTATGGGTATCATCCT+CGG + chr7_4:53167829-53167848 None:intergenic 45.0%
GTGGAGGTTCTGTCCTATTT+GGG + chr7_4:53167848-53167867 None:intergenic 45.0%
TGTGGAGGTTCTGTCCTATT+TGG + chr7_4:53167849-53167868 None:intergenic 45.0%
TAACCTCCAATCACAACCAG+AGG - chr7_4:53167898-53167917 Msa1162470:intron 45.0%
AACCTCCAATCACAACCAGA+GGG - chr7_4:53167899-53167918 Msa1162470:intron 45.0%
TTCATCCCTCTGGTTGTGAT+TGG + chr7_4:53167907-53167926 None:intergenic 45.0%
ATTAAAGCTCCCGCATATGC+AGG - chr7_4:53167955-53167974 Msa1162470:intron 45.0%
TTAAAGCTCCCGCATATGCA+GGG - chr7_4:53167956-53167975 Msa1162470:intron 45.0%
! AAATGTCCTTTTGTGAGGGG+GGG + chr7_4:53168073-53168092 None:intergenic 45.0%
!!! GGCCTGAGGTGTTTAGTTTT+TGG + chr7_4:53168105-53168124 None:intergenic 45.0%
AACACCTCAGGCCTTGATAA+CGG - chr7_4:53168112-53168131 Msa1162470:intron 45.0%
GGACTTCAAACTGTGAAACC+AGG - chr7_4:53168400-53168419 Msa1162470:intron 45.0%
CTCTGCTTGATCAGGAAAGA+AGG + chr7_4:53168713-53168732 None:intergenic 45.0%
ATCAGCTTCTCTGCTTGATC+AGG + chr7_4:53168721-53168740 None:intergenic 45.0%
AGGGGAAAACAACCAATCGA+TGG + chr7_4:53168777-53168796 None:intergenic 45.0%
AGTAAATTACCACCGCAGTG+GGG + chr7_4:53168931-53168950 None:intergenic 45.0%
TTCAAACACCGTACGTTGCT+AGG - chr7_4:53169048-53169067 Msa1162470:intron 45.0%
!!! TTTTAATTATTATTCTTAAA+AGG + chr7_4:53168475-53168494 None:intergenic 5.0%
GATAAGGAGTTACCAGGAGG+TGG + chr7_4:53166373-53166392 None:intergenic 50.0%
! ACAATGCAAGGAGCATGCCA+GGG - chr7_4:53166563-53166582 Msa1162470:three_prime_UTR 50.0%
CGATACAGTACCTGACTGCT+TGG - chr7_4:53167686-53167705 Msa1162470:intron 50.0%
TACAGTACCTGACTGCTTGG+TGG - chr7_4:53167689-53167708 Msa1162470:intron 50.0%
TATCCTACCACCAAGCAGTC+AGG + chr7_4:53167699-53167718 None:intergenic 50.0%
CCACTGCAAAGGATGCTTTC+TGG + chr7_4:53167728-53167747 None:intergenic 50.0%
!! CCAGAAAGCATCCTTTGCAG+TGG - chr7_4:53167725-53167744 Msa1162470:intron 50.0%
GCATCCTTTGCAGTGGATGA+TGG - chr7_4:53167732-53167751 Msa1162470:intron 50.0%
ATAGTAGCGCCCAATATCCG+AGG - chr7_4:53167809-53167828 Msa1162470:intron 50.0%
ACAGAACCTCCACAATGACG+AGG - chr7_4:53167855-53167874 Msa1162470:intron 50.0%
ATCCCTCTGGTTGTGATTGG+AGG + chr7_4:53167904-53167923 None:intergenic 50.0%
! AGCACGCTATTTCATCCCTC+TGG + chr7_4:53167917-53167936 None:intergenic 50.0%
GCAGCAGACCTTGACAAAGA+AGG + chr7_4:53168325-53168344 None:intergenic 50.0%
TTGCAGAATGCTGGCAAAGC+TGG - chr7_4:53168540-53168559 Msa1162470:intron 50.0%
GAATGCTGGCAAAGCTGGTT+TGG - chr7_4:53168545-53168564 Msa1162470:intron 50.0%
!! GCTGGTTTGGTGCAAATCCA+AGG - chr7_4:53168558-53168577 Msa1162470:intron 50.0%
AGCAGAGAAGCTGATCCAAC+TGG - chr7_4:53168726-53168745 Msa1162470:CDS 50.0%
CTAGATTGTCTACCCCACTG+CGG - chr7_4:53168916-53168935 Msa1162470:CDS 50.0%
! CACAATGCAAGGAGCATGCC+AGG - chr7_4:53166562-53166581 Msa1162470:three_prime_UTR 55.0%
! GTACCTGACTGCTTGGTGGT+AGG - chr7_4:53167693-53167712 Msa1162470:intron 55.0%
CTCCACAATGACGAGGACGT+GGG - chr7_4:53167862-53167881 Msa1162470:intron 55.0%
TTCCCACGTCCTCGTCATTG+TGG + chr7_4:53167867-53167886 None:intergenic 55.0%
TTTCCGGACCCTGCATATGC+GGG + chr7_4:53167967-53167986 None:intergenic 55.0%
CTTTCCGGACCCTGCATATG+CGG + chr7_4:53167968-53167987 None:intergenic 55.0%
GCATATGCAGGGTCCGGAAA+GGG - chr7_4:53167967-53167986 Msa1162470:intron 55.0%
CATATGCAGGGTCCGGAAAG+GGG - chr7_4:53167968-53167987 Msa1162470:intron 55.0%
! CAAATGGTGGGACCCCTTTC+CGG + chr7_4:53167983-53168002 None:intergenic 55.0%
ACAATTGCACCGTTGCGCCA+AGG - chr7_4:53168047-53168066 Msa1162470:intron 55.0%
! TGTGCCGTTATCAAGGCCTG+AGG + chr7_4:53168119-53168138 None:intergenic 55.0%
!! CCTTGATAACGGCACATCGC+CGG - chr7_4:53168123-53168142 Msa1162470:intron 55.0%
TCGACGGAGTTGCAGAATGC+TGG - chr7_4:53168531-53168550 Msa1162470:intron 55.0%
CTGATCCAACTGGTCCCTTC+AGG - chr7_4:53168736-53168755 Msa1162470:CDS 55.0%
CTTAGCCTGAAGGGACCAGT+TGG + chr7_4:53168744-53168763 None:intergenic 55.0%
GGACTGCTTTCTCCACCTCC+TGG - chr7_4:53166358-53166377 Msa1162470:three_prime_UTR 60.0%
CCACGTCCTCGTCATTGTGG+AGG + chr7_4:53167864-53167883 None:intergenic 60.0%
CCTCCACAATGACGAGGACG+TGG - chr7_4:53167861-53167880 Msa1162470:intron 60.0%
CGCATATGCAGGGTCCGGAA+AGG - chr7_4:53167966-53167985 Msa1162470:intron 60.0%
CGGAAAGGGGTCCCACCATT+TGG - chr7_4:53167981-53168000 Msa1162470:intron 60.0%
! CCGGCGATGTGCCGTTATCA+AGG + chr7_4:53168126-53168145 None:intergenic 60.0%
ATAACGGCACATCGCCGGCA+AGG - chr7_4:53168128-53168147 Msa1162470:intron 60.0%
GATTGTCTACCCCACTGCGG+TGG - chr7_4:53168919-53168938 Msa1162470:CDS 60.0%
GCTCCCGCATATGCAGGGTC+CGG - chr7_4:53167961-53167980 Msa1162470:intron 65.0%
! CCTTTTGTGAGGGGGGGCCT+TGG + chr7_4:53168067-53168086 None:intergenic 65.0%
CCAAGGCCCCCCCTCACAAA+AGG - chr7_4:53168064-53168083 Msa1162470:intron 65.0%
GAGGGGGGGCCTTGGCGCAA+CGG + chr7_4:53168059-53168078 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 53166329 53169152 53166329 ID=Msa1162470;Name=Msa1162470
chr7_4 mRNA 53166329 53169152 53166329 ID=Msa1162470-mRNA-1;Parent=Msa1162470;Name=Msa1162470-mRNA-1;_AED=0.02;_eAED=0.02;_QI=22|1|1|1|0.8|0.83|6|390|234
chr7_4 exon 53166329 53166789 53166329 ID=Msa1162470-mRNA-1:exon:15336;Parent=Msa1162470-mRNA-1
chr7_4 exon 53166866 53166970 53166866 ID=Msa1162470-mRNA-1:exon:15335;Parent=Msa1162470-mRNA-1
chr7_4 exon 53167060 53167145 53167060 ID=Msa1162470-mRNA-1:exon:15334;Parent=Msa1162470-mRNA-1
chr7_4 exon 53168189 53168339 53168189 ID=Msa1162470-mRNA-1:exon:15333;Parent=Msa1162470-mRNA-1
chr7_4 exon 53168691 53168953 53168691 ID=Msa1162470-mRNA-1:exon:15332;Parent=Msa1162470-mRNA-1
chr7_4 exon 53169102 53169152 53169102 ID=Msa1162470-mRNA-1:exon:15331;Parent=Msa1162470-mRNA-1
chr7_4 five_prime_UTR 53169131 53169152 53169131 ID=Msa1162470-mRNA-1:five_prime_utr;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53169102 53169130 53169102 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53168691 53168953 53168691 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53168189 53168339 53168189 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53167060 53167145 53167060 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53166866 53166970 53166866 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 CDS 53166719 53166789 53166719 ID=Msa1162470-mRNA-1:cds;Parent=Msa1162470-mRNA-1
chr7_4 three_prime_UTR 53166329 53166718 53166329 ID=Msa1162470-mRNA-1:three_prime_utr;Parent=Msa1162470-mRNA-1
Gene Sequence

>Msa1162470

ATGGCAGGGACTGCTTTCTCCACCTCCTGCAACTTAGGGAGATGTTGGTTGGTAGTAAAAACTCACAATGCAAGGAGCATGCCAGGGAAGCTAGTATCTCAATGTAAAATGAGAAGGAAGTTTACAATAAAAGCAGAAATTAAGTTTGTAACAGCTGATGATGCTAAGGAACTTGTAAAAGTAGATGGATATAATGTTCTTGATGTGAGGGACAAATCTCAATATGAAAGAGCACACATTAAAACATGTTATCATGTCCCTCTTTTTGTTGAAAATACAGACAATGATCCTGGTACAATCTTATTAAGGACAGTGCACAATAATTTTTCTGGGTTGTTCTTCGGGATACCATTCACTAGGCCAAATCCTGATTTCGTACAATCCGTGAAGAGTCAAATACAGCCTGAAACTAAACTCTTGATTGTTTGTCAGGAAGGATTGAGGTCTGCTGCAGCAGCAAATAAGTTAGAGGATGCTGGTTTCCAAAATGTAGCATGCATAACATCTGGACTTCAAACTGTGAAACCAGGGACATTTGAATCTGTTGGCTCGACGGAGTTGCAGAATGCTGGCAAAGCTGGTTTGGTGCAAATCCAAGGAAAAATTTCAGCTGTGTTGGGAACTGTTCTTATTTGTGCATATTTATTCATTACCTTCTTTCCTGATCAAGCAGAGAAGCTGATCCAACTGGTCCCTTCAGGCTAA

Protein sequence

>Msa1162470

MAGTAFSTSCNLGRCWLVVKTHNARSMPGKLVSQCKMRRKFTIKAEIKFVTADDAKELVKVDGYNVLDVRDKSQYERAHIKTCYHVPLFVENTDNDPGTILLRTVHNNFSGLFFGIPFTRPNPDFVQSVKSQIQPETKLLIVCQEGLRSAAAANKLEDAGFQNVACITSGLQTVKPGTFESVGSTELQNAGKAGLVQIQGKISAVLGTVLICAYLFITFFPDQAEKLIQLVPSG*