AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575460


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575460 MtrunA17_Chr8g0392631 80.992 242 15 5 1 221 1 232 5.51e-135 378
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575460 AT1G18060.1 61.929 197 56 2 42 219 28 224 3.60e-82 244

Find 36 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATAGCATGCATACCCTTT+TGG 0.254929 4_1:+79345006 None:intergenic
GAAGTGGAGGCACTGCATTT+TGG 0.392068 4_1:-79343456 Msa0575460:CDS
GTTGTTCTGAGAGACTTTGA+TGG 0.410391 4_1:+79345124 None:intergenic
GAGACGTACAACACATGAAT+TGG 0.417843 4_1:+79345157 None:intergenic
GAGAACCTTCGAATAAAAGT+TGG 0.424151 4_1:-79343595 Msa0575460:CDS
ACAAATCAGCCTTGGACAAA+AGG 0.429622 4_1:-79343557 Msa0575460:CDS
GCCTTGGACAAAAGGAAGAC+AGG 0.435622 4_1:-79343549 Msa0575460:CDS
AGGATTCCCCTGGGAGAACC+TGG 0.442328 4_1:-79344612 Msa0575460:CDS
CAAAAGGAAGACAGGGAACC+AGG 0.469312 4_1:-79343541 Msa0575460:CDS
TCTTGACACCCTTGGAGGAA+AGG 0.485221 4_1:-79344632 Msa0575460:CDS
CAGGGGAATCCTTTCCTCCA+AGG 0.495511 4_1:+79344623 None:intergenic
CAGCTAGCTACATTTGCAAA+TGG 0.499233 4_1:-79345206 Msa0575460:exon
AAACCTCTACAAATCAGCCT+TGG 0.505462 4_1:-79343565 Msa0575460:CDS
TTCAAGACGACAATCCCAAA+AGG 0.509709 4_1:-79345021 Msa0575460:CDS
CTTGGAGGAAAGGATTCCCC+TGG 0.519361 4_1:-79344622 Msa0575460:CDS
TGTCCAAGGCTGATTTGTAG+AGG 0.525164 4_1:+79343562 None:intergenic
AGGGGAATCCTTTCCTCCAA+GGG 0.528136 4_1:+79344624 None:intergenic
ATAAGCATCCAGGTTCTCCC+AGG 0.529448 4_1:+79344604 None:intergenic
GCTGAAAGAATCTCTTCTGC+TGG 0.545166 4_1:+79344697 None:intergenic
TTGTCGTCTTGAACAACAAG+TGG 0.560112 4_1:+79345031 None:intergenic
TATCTTTACGTAGGAAGTAG+AGG 0.562498 4_1:-79344764 Msa0575460:intron
GTTGCTCGAGGCCGAAGTGG+AGG 0.570500 4_1:-79343469 Msa0575460:CDS
AAATGCAGCTAAGACAAGAA+AGG 0.570671 4_1:-79344722 Msa0575460:CDS
AATCTCTGAACAGCTGTGAG+AGG 0.593439 4_1:+79344451 None:intergenic
CCTTGGACAAAAGGAAGACA+GGG 0.594579 4_1:-79343548 Msa0575460:CDS
TCAAGACGACAATCCCAAAA+GGG 0.595365 4_1:-79345020 Msa0575460:intron
TAAAATGGTTGAGAAGTGAA+AGG 0.596929 4_1:-79345250 Msa0575460:five_prime_UTR
TAAGCATCCAGGTTCTCCCA+GGG 0.619857 4_1:+79344605 None:intergenic
GCTGTTGCTCGAGGCCGAAG+TGG 0.620105 4_1:-79343472 Msa0575460:CDS
AGGGTGTCAAGAAAAGAAGA+AGG 0.621327 4_1:+79344643 None:intergenic
AGACAGGGAACCAGGTACAA+AGG 0.628697 4_1:-79343533 Msa0575460:CDS
TTGGAGGAAAGGATTCCCCT+GGG 0.641606 4_1:-79344621 Msa0575460:CDS
TGTCGTCTTGAACAACAAGT+GGG 0.651937 4_1:+79345032 None:intergenic
AAAATGCAGTGCCTCCACTT+CGG 0.663787 4_1:+79343458 None:intergenic
GAGGAAATAGCTGTTGCTCG+AGG 0.672148 4_1:-79343481 Msa0575460:CDS
AAGCATCCAGGTTCTCCCAG+GGG 0.717216 4_1:+79344606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAGTAAAGTAAAA+TGG - chr4_1:79343447-79343466 Msa0575460:CDS 10.0%
!! AAAAAAAAAGTAAAGTAAAA+TGG - chr4_1:79343447-79343466 Msa0575460:CDS 10.0%
!!! GAATTTTAGAAAAAATTAGA+TGG - chr4_1:79344225-79344244 Msa0575460:intron 15.0%
!!! ATTAATTTTTCCACTATAAA+TGG + chr4_1:79344350-79344369 None:intergenic 15.0%
!!! GAATTTTAGAAAAAATTAGA+TGG - chr4_1:79344225-79344244 Msa0575460:intron 15.0%
!!! ATTAATTTTTCCACTATAAA+TGG + chr4_1:79344350-79344369 None:intergenic 15.0%
!!! TTTTAGAAAAAATTAGATGG+TGG - chr4_1:79344228-79344247 Msa0575460:intron 20.0%
!!! TATCTAGAATGAAATATAGA+TGG + chr4_1:79344318-79344337 None:intergenic 20.0%
!!! GTTTTTATCTATGAGTTATA+AGG - chr4_1:79344691-79344710 Msa0575460:CDS 20.0%
!!! TCTTTAGAAGAAAAAAAACT+AGG - chr4_1:79344838-79344857 Msa0575460:intron 20.0%
!!! CTTTAGAAGAAAAAAAACTA+GGG - chr4_1:79344839-79344858 Msa0575460:intron 20.0%
!!! AAAACTAGGGTATTTTTTTT+TGG - chr4_1:79344852-79344871 Msa0575460:intron 20.0%
!! ACATAAAACCAGATAAAAAA+TGG + chr4_1:79345207-79345226 None:intergenic 20.0%
!!! TTTTAGAAAAAATTAGATGG+TGG - chr4_1:79344228-79344247 Msa0575460:intron 20.0%
!!! TATCTAGAATGAAATATAGA+TGG + chr4_1:79344318-79344337 None:intergenic 20.0%
!!! GTTTTTATCTATGAGTTATA+AGG - chr4_1:79344691-79344710 Msa0575460:CDS 20.0%
!!! TCTTTAGAAGAAAAAAAACT+AGG - chr4_1:79344838-79344857 Msa0575460:intron 20.0%
!!! CTTTAGAAGAAAAAAAACTA+GGG - chr4_1:79344839-79344858 Msa0575460:intron 20.0%
!!! AAAACTAGGGTATTTTTTTT+TGG - chr4_1:79344852-79344871 Msa0575460:intron 20.0%
!! ACATAAAACCAGATAAAAAA+TGG + chr4_1:79345207-79345226 None:intergenic 20.0%
! CCAAATTGAAATAAATGGAA+AGG + chr4_1:79343750-79343769 None:intergenic 25.0%
! CCTTTCCATTTATTTCAATT+TGG - chr4_1:79343747-79343766 Msa0575460:intron 25.0%
! TGGTTCCAAATTGAAATAAA+TGG + chr4_1:79343755-79343774 None:intergenic 25.0%
! CAAGAATCAAGGATATATTA+TGG - chr4_1:79343800-79343819 Msa0575460:intron 25.0%
!! TTTAACTTCTATCTTTACGT+AGG - chr4_1:79343939-79343958 Msa0575460:intron 25.0%
! CTTCTAATTATGCAAATGAA+GGG + chr4_1:79344377-79344396 None:intergenic 25.0%
! TCAAAACACAAACACATAAA+AGG + chr4_1:79344406-79344425 None:intergenic 25.0%
! TATTAAGGACAATTCTACAT+TGG - chr4_1:79344487-79344506 Msa0575460:intron 25.0%
!! CAATGAAGAATCTTTTATAG+AGG + chr4_1:79344717-79344736 None:intergenic 25.0%
!! CTGTATGTTGATAAATTGTT+AGG - chr4_1:79344896-79344915 Msa0575460:intron 25.0%
! TGATAAATTGTTAGGCAAAA+AGG - chr4_1:79344904-79344923 Msa0575460:intron 25.0%
! NNNNATGTTAATTGTCCGAT+AGG + chr4_1:79344954-79344973 None:intergenic 25.0%
! CCAAATTGAAATAAATGGAA+AGG + chr4_1:79343750-79343769 None:intergenic 25.0%
! CCTTTCCATTTATTTCAATT+TGG - chr4_1:79343747-79343766 Msa0575460:intron 25.0%
! TGGTTCCAAATTGAAATAAA+TGG + chr4_1:79343755-79343774 None:intergenic 25.0%
! CAAGAATCAAGGATATATTA+TGG - chr4_1:79343800-79343819 Msa0575460:intron 25.0%
!! TTTAACTTCTATCTTTACGT+AGG - chr4_1:79343939-79343958 Msa0575460:intron 25.0%
! CTTCTAATTATGCAAATGAA+GGG + chr4_1:79344377-79344396 None:intergenic 25.0%
! TCAAAACACAAACACATAAA+AGG + chr4_1:79344406-79344425 None:intergenic 25.0%
! TATTAAGGACAATTCTACAT+TGG - chr4_1:79344487-79344506 Msa0575460:intron 25.0%
!! CAATGAAGAATCTTTTATAG+AGG + chr4_1:79344717-79344736 None:intergenic 25.0%
!! CTGTATGTTGATAAATTGTT+AGG - chr4_1:79344896-79344915 Msa0575460:intron 25.0%
! TGATAAATTGTTAGGCAAAA+AGG - chr4_1:79344904-79344923 Msa0575460:intron 25.0%
! NNNNATGTTAATTGTCCGAT+AGG + chr4_1:79344954-79344973 None:intergenic 25.0%
TAAAATGGTTGAGAAGTGAA+AGG - chr4_1:79343462-79343481 Msa0575460:CDS 30.0%
!!! GTTGTTTTGAATGTCATCAA+GGG + chr4_1:79343661-79343680 None:intergenic 30.0%
CTTATGGACATGTTATAAGT+TGG + chr4_1:79343775-79343794 None:intergenic 30.0%
!!! GATGCTTATTTTTACTGCTA+AGG - chr4_1:79344122-79344141 Msa0575460:intron 30.0%
! TCTCTTATTTCGTATGATTC+TGG - chr4_1:79344157-79344176 Msa0575460:intron 30.0%
! TAGAAAAAATTAGATGGTGG+TGG - chr4_1:79344231-79344250 Msa0575460:intron 30.0%
ACATAAGAGTCCATTTATAG+TGG - chr4_1:79344337-79344356 Msa0575460:intron 30.0%
GCTTCTAATTATGCAAATGA+AGG + chr4_1:79344378-79344397 None:intergenic 30.0%
!! TGTGTTTTGAACTACATTCT+CGG - chr4_1:79344416-79344435 Msa0575460:intron 30.0%
TTCTACATTGGATATTGTGA+TGG - chr4_1:79344499-79344518 Msa0575460:intron 30.0%
ATAACATTGTGATTTACCAC+CGG + chr4_1:79344650-79344669 None:intergenic 30.0%
TGGTAAATCACAATGTTATC+TGG - chr4_1:79344651-79344670 Msa0575460:CDS 30.0%
AATCACAATGTTATCTGGAA+TGG - chr4_1:79344656-79344675 Msa0575460:CDS 30.0%
TTGCATAAGAAGAGTTAAGA+AGG + chr4_1:79344740-79344759 None:intergenic 30.0%
TATGCCAAATCATCAAACTA+TGG - chr4_1:79344807-79344826 Msa0575460:intron 30.0%
! TTAGCCATAGTTTGATGATT+TGG + chr4_1:79344814-79344833 None:intergenic 30.0%
!! CTGATTTGTAGAGGTTTTAA+AGG + chr4_1:79345144-79345163 None:intergenic 30.0%
!!! CAAAGGATCCATTTTTTATC+TGG - chr4_1:79345196-79345215 Msa0575460:exon 30.0%
!!! TATCTGGTTTTATGTTGATG+AGG - chr4_1:79345212-79345231 Msa0575460:five_prime_UTR 30.0%
TAAAATGGTTGAGAAGTGAA+AGG - chr4_1:79343462-79343481 Msa0575460:CDS 30.0%
!!! GTTGTTTTGAATGTCATCAA+GGG + chr4_1:79343661-79343680 None:intergenic 30.0%
CTTATGGACATGTTATAAGT+TGG + chr4_1:79343775-79343794 None:intergenic 30.0%
!!! GATGCTTATTTTTACTGCTA+AGG - chr4_1:79344122-79344141 Msa0575460:intron 30.0%
! TCTCTTATTTCGTATGATTC+TGG - chr4_1:79344157-79344176 Msa0575460:intron 30.0%
! TAGAAAAAATTAGATGGTGG+TGG - chr4_1:79344231-79344250 Msa0575460:intron 30.0%
ACATAAGAGTCCATTTATAG+TGG - chr4_1:79344337-79344356 Msa0575460:intron 30.0%
GCTTCTAATTATGCAAATGA+AGG + chr4_1:79344378-79344397 None:intergenic 30.0%
!! TGTGTTTTGAACTACATTCT+CGG - chr4_1:79344416-79344435 Msa0575460:intron 30.0%
TTCTACATTGGATATTGTGA+TGG - chr4_1:79344499-79344518 Msa0575460:intron 30.0%
ATAACATTGTGATTTACCAC+CGG + chr4_1:79344650-79344669 None:intergenic 30.0%
TGGTAAATCACAATGTTATC+TGG - chr4_1:79344651-79344670 Msa0575460:CDS 30.0%
AATCACAATGTTATCTGGAA+TGG - chr4_1:79344656-79344675 Msa0575460:CDS 30.0%
TTGCATAAGAAGAGTTAAGA+AGG + chr4_1:79344740-79344759 None:intergenic 30.0%
TATGCCAAATCATCAAACTA+TGG - chr4_1:79344807-79344826 Msa0575460:intron 30.0%
! TTAGCCATAGTTTGATGATT+TGG + chr4_1:79344814-79344833 None:intergenic 30.0%
!! CTGATTTGTAGAGGTTTTAA+AGG + chr4_1:79345144-79345163 None:intergenic 30.0%
!!! CAAAGGATCCATTTTTTATC+TGG - chr4_1:79345196-79345215 Msa0575460:exon 30.0%
!!! TATCTGGTTTTATGTTGATG+AGG - chr4_1:79345212-79345231 Msa0575460:five_prime_UTR 30.0%
!!! GGTTGTTTTGAATGTCATCA+AGG + chr4_1:79343662-79343681 None:intergenic 35.0%
! AATAGCATGCATACCCTTTT+GGG + chr4_1:79343708-79343727 None:intergenic 35.0%
CTTGATTCTTGAAGAGCTTA+TGG + chr4_1:79343791-79343810 None:intergenic 35.0%
CATAAGCTCTTCAAGAATCA+AGG - chr4_1:79343789-79343808 Msa0575460:intron 35.0%
TATCTTTACGTAGGAAGTAG+AGG - chr4_1:79343948-79343967 Msa0575460:intron 35.0%
AAATGCAGCTAAGACAAGAA+AGG - chr4_1:79343990-79344009 Msa0575460:intron 35.0%
AGCAGTAAAAATAAGCATCC+AGG + chr4_1:79344121-79344140 None:intergenic 35.0%
CTTAGCCACTTACATGAAAT+CGG - chr4_1:79344568-79344587 Msa0575460:intron 35.0%
TTAGCCACTTACATGAAATC+GGG - chr4_1:79344569-79344588 Msa0575460:intron 35.0%
TAACATTGTGATTTACCACC+GGG + chr4_1:79344649-79344668 None:intergenic 35.0%
TGGCATATGCAACATTTACA+AGG + chr4_1:79344794-79344813 None:intergenic 35.0%
TAGGCAAAAAGGATCGAAAA+CGG - chr4_1:79344915-79344934 Msa0575460:intron 35.0%
ATCGAAAACGGTGTATTTCT+TGG - chr4_1:79344927-79344946 Msa0575460:intron 35.0%
GAGAACCTTCGAATAAAAGT+TGG - chr4_1:79345117-79345136 Msa0575460:CDS 35.0%
! AAGGTCCAACTTTTATTCGA+AGG + chr4_1:79345125-79345144 None:intergenic 35.0%
AAAAATGGATCCTTTGTACC+TGG + chr4_1:79345192-79345211 None:intergenic 35.0%
!!! GGTTGTTTTGAATGTCATCA+AGG + chr4_1:79343662-79343681 None:intergenic 35.0%
! AATAGCATGCATACCCTTTT+GGG + chr4_1:79343708-79343727 None:intergenic 35.0%
CTTGATTCTTGAAGAGCTTA+TGG + chr4_1:79343791-79343810 None:intergenic 35.0%
CATAAGCTCTTCAAGAATCA+AGG - chr4_1:79343789-79343808 Msa0575460:intron 35.0%
TATCTTTACGTAGGAAGTAG+AGG - chr4_1:79343948-79343967 Msa0575460:intron 35.0%
AAATGCAGCTAAGACAAGAA+AGG - chr4_1:79343990-79344009 Msa0575460:intron 35.0%
AGCAGTAAAAATAAGCATCC+AGG + chr4_1:79344121-79344140 None:intergenic 35.0%
CTTAGCCACTTACATGAAAT+CGG - chr4_1:79344568-79344587 Msa0575460:intron 35.0%
TTAGCCACTTACATGAAATC+GGG - chr4_1:79344569-79344588 Msa0575460:intron 35.0%
TAACATTGTGATTTACCACC+GGG + chr4_1:79344649-79344668 None:intergenic 35.0%
TGGCATATGCAACATTTACA+AGG + chr4_1:79344794-79344813 None:intergenic 35.0%
TAGGCAAAAAGGATCGAAAA+CGG - chr4_1:79344915-79344934 Msa0575460:intron 35.0%
ATCGAAAACGGTGTATTTCT+TGG - chr4_1:79344927-79344946 Msa0575460:intron 35.0%
GAGAACCTTCGAATAAAAGT+TGG - chr4_1:79345117-79345136 Msa0575460:CDS 35.0%
! AAGGTCCAACTTTTATTCGA+AGG + chr4_1:79345125-79345144 None:intergenic 35.0%
AAAAATGGATCCTTTGTACC+TGG + chr4_1:79345192-79345211 None:intergenic 35.0%
CAGCTAGCTACATTTGCAAA+TGG - chr4_1:79343506-79343525 Msa0575460:CDS 40.0%
GAGACGTACAACACATGAAT+TGG + chr4_1:79343558-79343577 None:intergenic 40.0%
!! GTTGTTCTGAGAGACTTTGA+TGG + chr4_1:79343591-79343610 None:intergenic 40.0%
TGTCGTCTTGAACAACAAGT+GGG + chr4_1:79343683-79343702 None:intergenic 40.0%
TTGTCGTCTTGAACAACAAG+TGG + chr4_1:79343684-79343703 None:intergenic 40.0%
TTCAAGACGACAATCCCAAA+AGG - chr4_1:79343691-79343710 Msa0575460:intron 40.0%
TCAAGACGACAATCCCAAAA+GGG - chr4_1:79343692-79343711 Msa0575460:intron 40.0%
! CAATAGCATGCATACCCTTT+TGG + chr4_1:79343709-79343728 None:intergenic 40.0%
! AGGGTGTCAAGAAAAGAAGA+AGG + chr4_1:79344072-79344091 None:intergenic 40.0%
! TCTTCTTTTCTTGACACCCT+TGG - chr4_1:79344072-79344091 Msa0575460:intron 40.0%
! TACGAGGTTGTGAGGATTTT+AGG - chr4_1:79344531-79344550 Msa0575460:intron 40.0%
TAGCCACTTACATGAAATCG+GGG - chr4_1:79344570-79344589 Msa0575460:intron 40.0%
TAACCCCGATTTCATGTAAG+TGG + chr4_1:79344576-79344595 None:intergenic 40.0%
AACATTGTGATTTACCACCG+GGG + chr4_1:79344648-79344667 None:intergenic 40.0%
GGTGTATTTCTTGGACCTAT+CGG - chr4_1:79344936-79344955 Msa0575460:intron 40.0%
AAACCTCTACAAATCAGCCT+TGG - chr4_1:79345147-79345166 Msa0575460:CDS 40.0%
ACAAATCAGCCTTGGACAAA+AGG - chr4_1:79345155-79345174 Msa0575460:CDS 40.0%
CAGCTAGCTACATTTGCAAA+TGG - chr4_1:79343506-79343525 Msa0575460:CDS 40.0%
GAGACGTACAACACATGAAT+TGG + chr4_1:79343558-79343577 None:intergenic 40.0%
!! GTTGTTCTGAGAGACTTTGA+TGG + chr4_1:79343591-79343610 None:intergenic 40.0%
TGTCGTCTTGAACAACAAGT+GGG + chr4_1:79343683-79343702 None:intergenic 40.0%
TTGTCGTCTTGAACAACAAG+TGG + chr4_1:79343684-79343703 None:intergenic 40.0%
TTCAAGACGACAATCCCAAA+AGG - chr4_1:79343691-79343710 Msa0575460:intron 40.0%
TCAAGACGACAATCCCAAAA+GGG - chr4_1:79343692-79343711 Msa0575460:intron 40.0%
! CAATAGCATGCATACCCTTT+TGG + chr4_1:79343709-79343728 None:intergenic 40.0%
! AGGGTGTCAAGAAAAGAAGA+AGG + chr4_1:79344072-79344091 None:intergenic 40.0%
! TCTTCTTTTCTTGACACCCT+TGG - chr4_1:79344072-79344091 Msa0575460:intron 40.0%
! TACGAGGTTGTGAGGATTTT+AGG - chr4_1:79344531-79344550 Msa0575460:intron 40.0%
TAGCCACTTACATGAAATCG+GGG - chr4_1:79344570-79344589 Msa0575460:intron 40.0%
TAACCCCGATTTCATGTAAG+TGG + chr4_1:79344576-79344595 None:intergenic 40.0%
AACATTGTGATTTACCACCG+GGG + chr4_1:79344648-79344667 None:intergenic 40.0%
GGTGTATTTCTTGGACCTAT+CGG - chr4_1:79344936-79344955 Msa0575460:intron 40.0%
AAACCTCTACAAATCAGCCT+TGG - chr4_1:79345147-79345166 Msa0575460:CDS 40.0%
ACAAATCAGCCTTGGACAAA+AGG - chr4_1:79345155-79345174 Msa0575460:CDS 40.0%
GCTGAAAGAATCTCTTCTGC+TGG + chr4_1:79344018-79344037 None:intergenic 45.0%
! TCTTTTCTTGACACCCTTGG+AGG - chr4_1:79344075-79344094 Msa0575460:intron 45.0%
AATCTCTGAACAGCTGTGAG+AGG + chr4_1:79344264-79344283 None:intergenic 45.0%
!! GTGATGGTACCACTTTTACG+AGG - chr4_1:79344515-79344534 Msa0575460:intron 45.0%
!! ACCACTTTTACGAGGTTGTG+AGG - chr4_1:79344523-79344542 Msa0575460:intron 45.0%
TCCTCACAACCTCGTAAAAG+TGG + chr4_1:79344527-79344546 None:intergenic 45.0%
! GTTATCTGGAATGGCTCTTG+TGG - chr4_1:79344665-79344684 Msa0575460:CDS 45.0%
!! TGTCCAAGGCTGATTTGTAG+AGG + chr4_1:79345153-79345172 None:intergenic 45.0%
CCTTGGACAAAAGGAAGACA+GGG - chr4_1:79345164-79345183 Msa0575460:CDS 45.0%
AAAATGCAGTGCCTCCACTT+CGG + chr4_1:79345257-79345276 None:intergenic 45.0%
GCTGAAAGAATCTCTTCTGC+TGG + chr4_1:79344018-79344037 None:intergenic 45.0%
! TCTTTTCTTGACACCCTTGG+AGG - chr4_1:79344075-79344094 Msa0575460:intron 45.0%
AATCTCTGAACAGCTGTGAG+AGG + chr4_1:79344264-79344283 None:intergenic 45.0%
!! GTGATGGTACCACTTTTACG+AGG - chr4_1:79344515-79344534 Msa0575460:intron 45.0%
!! ACCACTTTTACGAGGTTGTG+AGG - chr4_1:79344523-79344542 Msa0575460:intron 45.0%
TCCTCACAACCTCGTAAAAG+TGG + chr4_1:79344527-79344546 None:intergenic 45.0%
! GTTATCTGGAATGGCTCTTG+TGG - chr4_1:79344665-79344684 Msa0575460:CDS 45.0%
!! TGTCCAAGGCTGATTTGTAG+AGG + chr4_1:79345153-79345172 None:intergenic 45.0%
CCTTGGACAAAAGGAAGACA+GGG - chr4_1:79345164-79345183 Msa0575460:CDS 45.0%
AAAATGCAGTGCCTCCACTT+CGG + chr4_1:79345257-79345276 None:intergenic 45.0%
!!! TATAATTTTTACTTATATTA+AGG - chr4_1:79344472-79344491 Msa0575460:CDS 5.0%
!!! TATAATTTTTACTTATATTA+AGG - chr4_1:79344472-79344491 Msa0575460:CDS 5.0%
TCTTGACACCCTTGGAGGAA+AGG - chr4_1:79344080-79344099 Msa0575460:intron 50.0%
AGGGGAATCCTTTCCTCCAA+GGG + chr4_1:79344091-79344110 None:intergenic 50.0%
TTGGAGGAAAGGATTCCCCT+GGG - chr4_1:79344091-79344110 Msa0575460:intron 50.0%
TAAGCATCCAGGTTCTCCCA+GGG + chr4_1:79344110-79344129 None:intergenic 50.0%
ATAAGCATCCAGGTTCTCCC+AGG + chr4_1:79344111-79344130 None:intergenic 50.0%
GCCTTGGACAAAAGGAAGAC+AGG - chr4_1:79345163-79345182 Msa0575460:CDS 50.0%
! CCCTGTCTTCCTTTTGTCCA+AGG + chr4_1:79345167-79345186 None:intergenic 50.0%
CAAAAGGAAGACAGGGAACC+AGG - chr4_1:79345171-79345190 Msa0575460:CDS 50.0%
AGACAGGGAACCAGGTACAA+AGG - chr4_1:79345179-79345198 Msa0575460:CDS 50.0%
GAGGAAATAGCTGTTGCTCG+AGG - chr4_1:79345231-79345250 Msa0575460:five_prime_UTR 50.0%
!!! GAAGTGGAGGCACTGCATTT+TGG - chr4_1:79345256-79345275 Msa0575460:five_prime_UTR 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG - chr4_1:79345262-79345281 Msa0575460:five_prime_UTR 50.0%
!!! ATTTTGGTGTCGGTGTCGTC+AGG - chr4_1:79345272-79345291 Msa0575460:five_prime_UTR 50.0%
TCTTGACACCCTTGGAGGAA+AGG - chr4_1:79344080-79344099 Msa0575460:intron 50.0%
AGGGGAATCCTTTCCTCCAA+GGG + chr4_1:79344091-79344110 None:intergenic 50.0%
TTGGAGGAAAGGATTCCCCT+GGG - chr4_1:79344091-79344110 Msa0575460:intron 50.0%
TAAGCATCCAGGTTCTCCCA+GGG + chr4_1:79344110-79344129 None:intergenic 50.0%
ATAAGCATCCAGGTTCTCCC+AGG + chr4_1:79344111-79344130 None:intergenic 50.0%
GCCTTGGACAAAAGGAAGAC+AGG - chr4_1:79345163-79345182 Msa0575460:CDS 50.0%
! CCCTGTCTTCCTTTTGTCCA+AGG + chr4_1:79345167-79345186 None:intergenic 50.0%
CAAAAGGAAGACAGGGAACC+AGG - chr4_1:79345171-79345190 Msa0575460:CDS 50.0%
AGACAGGGAACCAGGTACAA+AGG - chr4_1:79345179-79345198 Msa0575460:CDS 50.0%
GAGGAAATAGCTGTTGCTCG+AGG - chr4_1:79345231-79345250 Msa0575460:five_prime_UTR 50.0%
!!! GAAGTGGAGGCACTGCATTT+TGG - chr4_1:79345256-79345275 Msa0575460:five_prime_UTR 50.0%
!!! GAGGCACTGCATTTTGGTGT+CGG - chr4_1:79345262-79345281 Msa0575460:five_prime_UTR 50.0%
!!! ATTTTGGTGTCGGTGTCGTC+AGG - chr4_1:79345272-79345291 Msa0575460:five_prime_UTR 50.0%
CAGGGGAATCCTTTCCTCCA+AGG + chr4_1:79344092-79344111 None:intergenic 55.0%
CTTGGAGGAAAGGATTCCCC+TGG - chr4_1:79344090-79344109 Msa0575460:intron 55.0%
AAGCATCCAGGTTCTCCCAG+GGG + chr4_1:79344109-79344128 None:intergenic 55.0%
GGTTTAGCACAAGTGGTCGG+AGG + chr4_1:79344627-79344646 None:intergenic 55.0%
CGGGGTTTAGCACAAGTGGT+CGG + chr4_1:79344630-79344649 None:intergenic 55.0%
CGACCACTTGTGCTAAACCC+CGG - chr4_1:79344628-79344647 Msa0575460:CDS 55.0%
CAGGGGAATCCTTTCCTCCA+AGG + chr4_1:79344092-79344111 None:intergenic 55.0%
CTTGGAGGAAAGGATTCCCC+TGG - chr4_1:79344090-79344109 Msa0575460:intron 55.0%
AAGCATCCAGGTTCTCCCAG+GGG + chr4_1:79344109-79344128 None:intergenic 55.0%
GGTTTAGCACAAGTGGTCGG+AGG + chr4_1:79344627-79344646 None:intergenic 55.0%
CGGGGTTTAGCACAAGTGGT+CGG + chr4_1:79344630-79344649 None:intergenic 55.0%
CGACCACTTGTGCTAAACCC+CGG - chr4_1:79344628-79344647 Msa0575460:CDS 55.0%
AGGATTCCCCTGGGAGAACC+TGG - chr4_1:79344100-79344119 Msa0575460:intron 60.0%
AGCACAAGTGGTCGGAGGCT+CGG + chr4_1:79344622-79344641 None:intergenic 60.0%
CCACCGGGGTTTAGCACAAG+TGG + chr4_1:79344634-79344653 None:intergenic 60.0%
CCACTTGTGCTAAACCCCGG+TGG - chr4_1:79344631-79344650 Msa0575460:CDS 60.0%
AGGATTCCCCTGGGAGAACC+TGG - chr4_1:79344100-79344119 Msa0575460:intron 60.0%
AGCACAAGTGGTCGGAGGCT+CGG + chr4_1:79344622-79344641 None:intergenic 60.0%
CCACCGGGGTTTAGCACAAG+TGG + chr4_1:79344634-79344653 None:intergenic 60.0%
CCACTTGTGCTAAACCCCGG+TGG - chr4_1:79344631-79344650 Msa0575460:CDS 60.0%
GCTGTTGCTCGAGGCCGAAG+TGG - chr4_1:79345240-79345259 Msa0575460:five_prime_UTR 65.0%
GTTGCTCGAGGCCGAAGTGG+AGG - chr4_1:79345243-79345262 Msa0575460:five_prime_UTR 65.0%
GCTGTTGCTCGAGGCCGAAG+TGG - chr4_1:79345240-79345259 Msa0575460:five_prime_UTR 65.0%
GTTGCTCGAGGCCGAAGTGG+AGG - chr4_1:79345243-79345262 Msa0575460:five_prime_UTR 65.0%
!! GCTCGGTGTGCAGGGTGCGT+GGG + chr4_1:79344605-79344624 None:intergenic 70.0%
!! GGTCGGAGGCTCGGTGTGCA+GGG + chr4_1:79344613-79344632 None:intergenic 70.0%
!! TGGTCGGAGGCTCGGTGTGC+AGG + chr4_1:79344614-79344633 None:intergenic 70.0%
!! GCTCGGTGTGCAGGGTGCGT+GGG + chr4_1:79344605-79344624 None:intergenic 70.0%
!! GGTCGGAGGCTCGGTGTGCA+GGG + chr4_1:79344613-79344632 None:intergenic 70.0%
!! TGGTCGGAGGCTCGGTGTGC+AGG + chr4_1:79344614-79344633 None:intergenic 70.0%
!! GGCTCGGTGTGCAGGGTGCG+TGG + chr4_1:79344606-79344625 None:intergenic 75.0%
!! GGCTCGGTGTGCAGGGTGCG+TGG + chr4_1:79344606-79344625 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 79343429 79345305 79343429 ID=Msa0575460;Name=Msa0575460
chr4_1 mRNA 79343429 79345305 79343429 ID=Msa0575460-mRNA-1;Parent=Msa0575460;Name=Msa0575460-mRNA-1;_AED=0.33;_eAED=0.33;_QI=96|0.66|0.5|1|1|1|4|0|221
chr4_1 exon 79343429 79343658 79343429 ID=Msa0575460-mRNA-1:exon:28306;Parent=Msa0575460-mRNA-1
chr4_1 exon 79344437 79344500 79344437 ID=Msa0575460-mRNA-1:exon:28305;Parent=Msa0575460-mRNA-1
chr4_1 exon 79344591 79344773 79344591 ID=Msa0575460-mRNA-1:exon:28304;Parent=Msa0575460-mRNA-1
chr4_1 exon 79345021 79345305 79345021 ID=Msa0575460-mRNA-1:exon:28303;Parent=Msa0575460-mRNA-1
chr4_1 five_prime_UTR 79345210 79345305 79345210 ID=Msa0575460-mRNA-1:five_prime_utr;Parent=Msa0575460-mRNA-1
chr4_1 CDS 79345021 79345209 79345021 ID=Msa0575460-mRNA-1:cds;Parent=Msa0575460-mRNA-1
chr4_1 CDS 79344591 79344773 79344591 ID=Msa0575460-mRNA-1:cds;Parent=Msa0575460-mRNA-1
chr4_1 CDS 79344437 79344500 79344437 ID=Msa0575460-mRNA-1:cds;Parent=Msa0575460-mRNA-1
chr4_1 CDS 79343429 79343658 79343429 ID=Msa0575460-mRNA-1:cds;Parent=Msa0575460-mRNA-1
Gene Sequence

>Msa0575460

ATGGCAATGAACTACTGTATACACACATCACCAATTCATGTGTTGTACGTCTCATCTTTTAAACCATCAAAGTCTCTCAGAACAACAACAACAAAACATCATCATCATGTTCAAAGAACAAGAATAAGAGCAACCCTTGATGACATTCAAAACAACCCACTTGTTGTTCAAGACGACAATCCCAAAAGGGAAGTAGAGGAATGTGTGAAACTGCTTAAAAATGCAGCTAAGACAAGAAAGGTACCAGCAGAAGAGATTCTTTCAGCACTGTCTCTCATTGAGAAAGCAAAAATTGATCCTTCTTCTTTTCTTGACACCCTTGGAGGAAAGGATTCCCCTGGGAGAACCTGGATGCTTATTTTTACTGCTAAGAAAAAATTAGATGGTGGTGGATATTTTCCTCTCACAGCTGTTCAGAGATTTGATGCTGCTGTAAGCAGACTGTCGTGGAAAAACAGAATATTGTCTTTCATTTTTGAGAACCTTCGAATAAAAGTTGGACCTTTAAAACCTCTACAAATCAGCCTTGGACAAAAGGAAGACAGGGAACCAGGTACAAAGGATCCATTTTTTATCTGGTTTTATGTTGATGAGGAAATAGCTGTTGCTCGAGGCCGAAGTGGAGGCACTGCATTTTGGTGTCGGTGTCGTCAGGTTGATATTTGA

Protein sequence

>Msa0575460

MAMNYCIHTSPIHVLYVSSFKPSKSLRTTTTKHHHHVQRTRIRATLDDIQNNPLVVQDDNPKREVEECVKLLKNAAKTRKVPAEEILSALSLIEKAKIDPSSFLDTLGGKDSPGRTWMLIFTAKKKLDGGGYFPLTAVQRFDAAVSRLSWKNRILSFIFENLRIKVGPLKPLQISLGQKEDREPGTKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRQVDI*