AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0118790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118790 MtrunA17_Chr1g0176321 94.350 177 10 0 21 197 1 177 1.35e-126 353
Msa0118790 MtrunA17_Chr1g0176311 79.695 197 33 5 1 197 1 190 1.47e-107 306
Msa0118790 MtrunA17_Chr1g0192651 37.989 179 88 4 13 191 3 158 4.19e-33 116
Msa0118790 MtrunA17_Chr1g0195661 38.251 183 95 4 13 194 2 167 1.41e-32 115
Msa0118790 MtrunA17_Chr1g0194801 37.288 177 88 6 17 190 2 158 8.23e-30 107
Msa0118790 MtrunA17_Chr5g0427291 36.047 172 91 7 25 188 10 170 3.22e-27 101
Msa0118790 MtrunA17_Chr7g0269301 34.483 174 95 4 22 194 7 162 3.94e-22 88.2
Msa0118790 MtrunA17_Chr4g0032261 32.530 166 97 3 24 188 6 157 7.10e-19 79.7
Msa0118790 MtrunA17_Chr2g0323291 30.601 183 94 6 24 194 26 187 7.01e-18 78.6
Msa0118790 MtrunA17_Chr4g0001641 45.902 61 33 0 128 188 5 65 1.26e-16 71.2
Msa0118790 MtrunA17_Chr2g0294421 30.460 174 102 4 24 194 6 163 2.10e-15 70.5
Msa0118790 MtrunA17_Chr4g0008801 30.723 166 94 4 27 188 9 157 3.92e-15 69.7
Msa0118790 MtrunA17_Chr6g0450171 31.034 87 60 0 102 188 76 162 4.69e-15 69.7
Msa0118790 MtrunA17_Chr5g0433951 29.167 192 85 7 25 197 7 166 5.89e-15 69.3
Msa0118790 MtrunA17_Chr7g0240701 28.743 167 102 4 24 188 6 157 2.16e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0118790 AT3G11930.1 56.395 172 69 3 24 195 34 199 8.23e-67 203
Msa0118790 AT3G11930.2 56.647 173 68 4 24 195 34 200 8.88e-66 201
Msa0118790 AT3G11930.4 56.322 174 68 4 24 195 34 201 1.34e-65 201
Msa0118790 AT3G11930.3 49.246 199 68 5 24 195 34 226 7.92e-60 187
Msa0118790 AT3G58450.1 51.786 168 74 3 25 192 32 192 1.28e-53 170
Msa0118790 AT3G58450.2 50.000 168 70 3 25 192 32 185 3.16e-51 164
Msa0118790 AT1G09740.2 36.416 173 91 4 25 192 10 168 3.70e-30 109
Msa0118790 AT1G09740.1 36.416 173 91 4 25 192 10 168 3.70e-30 109
Msa0118790 AT3G62550.1 35.928 167 87 4 24 188 8 156 8.87e-28 103
Msa0118790 AT2G47710.1 33.918 171 94 4 22 191 7 159 1.84e-27 102
Msa0118790 AT1G68300.1 33.143 175 97 3 15 188 2 157 4.06e-24 93.6
Msa0118790 AT3G01520.1 25.843 178 97 5 24 188 7 162 3.29e-15 70.5
Msa0118790 AT5G14680.1 30.612 98 67 1 91 188 66 162 1.53e-14 68.9
Msa0118790 AT3G03270.2 32.530 166 95 4 25 188 7 157 1.01e-13 66.2
Msa0118790 AT3G53990.1 29.070 172 95 6 27 191 9 160 2.16e-13 65.5
Msa0118790 AT3G17020.1 30.058 173 93 5 24 188 8 160 3.62e-13 64.7
Msa0118790 AT1G11360.2 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0118790 AT1G11360.1 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0118790 AT1G11360.4 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0118790 AT1G11360.3 27.222 180 103 6 22 192 37 197 5.62e-13 65.9

Find 63 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTTAAGTATATCTTCTA+TGG 0.174763 1_3:-41990043 Msa0118790:three_prime_UTR
CGTTATGGCTACTGATACTA+TGG 0.183037 1_3:-41992068 Msa0118790:CDS
GCAGAAAGTGTGATTCTTAA+TGG 0.228368 1_3:-41990383 Msa0118790:CDS
TATGCATAAGTGTGGAAATT+TGG 0.264690 1_3:+41991992 None:intergenic
TATTTCTAATTGAATAATCT+TGG 0.297973 1_3:-41989967 Msa0118790:three_prime_UTR
CCAGCTGGTCCCATAGGTAT+AGG 0.340250 1_3:+41991968 None:intergenic
TTCAAAGAATCCCCAACTTC+AGG 0.340569 1_3:+41991587 None:intergenic
ATCCATCAACACCTGAAGTT+GGG 0.365371 1_3:-41991598 Msa0118790:CDS
AAAAGGGTGATGGAGGAAAT+AGG 0.378001 1_3:-41992220 None:intergenic
TGATAACCTCTTCAACGTTA+TGG 0.381044 1_3:-41992083 Msa0118790:CDS
GGCTAAGTCTGGAATAATCT+TGG 0.411526 1_3:-41990017 Msa0118790:three_prime_UTR
GCAAGTTGATCTCTTAATCA+TGG 0.412365 1_3:-41990321 Msa0118790:CDS
CAGCTGGTCCCATAGGTATA+GGG 0.428625 1_3:+41991969 None:intergenic
ATTTCTAATTGAATAATCTT+GGG 0.429529 1_3:-41989966 Msa0118790:three_prime_UTR
TTCTATGGGATGGCTAAGTC+TGG 0.444356 1_3:-41990028 Msa0118790:three_prime_UTR
ATCATGGGTAGTCGTGGCCT+TGG 0.451807 1_3:-41990305 Msa0118790:CDS
TCCCCAACTTCAGGTGTTGA+TGG 0.458443 1_3:+41991596 None:intergenic
TATCCATCAACACCTGAAGT+TGG 0.466557 1_3:-41991599 Msa0118790:CDS
CCTATGGGACCAGCTGGTAT+TGG 0.470932 1_3:-41991962 Msa0118790:intron
TTATGCATACCCTATACCTA+TGG 0.478213 1_3:-41991978 Msa0118790:CDS
ATCTGCAGCTATTGCCTCAC+GGG 0.482712 1_3:-41991546 Msa0118790:CDS
TGCAAGAGAAATGATTAGTC+AGG 0.497260 1_3:-41990357 Msa0118790:CDS
TGTTTAAGTATATCTTCTAT+GGG 0.497538 1_3:-41990042 Msa0118790:three_prime_UTR
GAAGCTTGTATGCTCTTAAG+TGG 0.498753 1_3:-41992111 Msa0118790:CDS
GTGGCCTTGGCAAACTCAAA+AGG 0.501962 1_3:-41990292 Msa0118790:intron
TTTGGTGGCAGAGCCTTCCT+TGG 0.503463 1_3:-41990164 Msa0118790:intron
GCAAATGTGCAAGGATAAGC+AGG 0.503833 1_3:-41991519 Msa0118790:intron
GGTGGCTTCACAATGAGAAT+AGG 0.504003 1_3:+41990104 None:intergenic
TGGAAGTGTTGATCAAGTGA+GGG 0.512230 1_3:-41992197 Msa0118790:CDS
TAAGTATATCTTCTATGGGA+TGG 0.519898 1_3:-41990038 Msa0118790:three_prime_UTR
CCAATACCAGCTGGTCCCAT+AGG 0.522576 1_3:+41991962 None:intergenic
AAAGAGAAGGATGAAGATGA+AGG 0.523647 1_3:-41992161 Msa0118790:CDS
TAACGTTGAAGAGGTTATCA+AGG 0.523668 1_3:+41992086 None:intergenic
ATCTGAAAATGAGGAGGGGA+TGG 0.523730 1_3:-41992035 Msa0118790:CDS
TCCATCAACACCTGAAGTTG+GGG 0.531250 1_3:-41991597 Msa0118790:CDS
CTCTTAATCATGGGTAGTCG+TGG 0.541714 1_3:-41990311 Msa0118790:CDS
AATAGTCACTTACACTTCCA+AGG 0.548894 1_3:+41990147 None:intergenic
TGGAACAACATCTGAAAATG+AGG 0.557443 1_3:-41992044 Msa0118790:CDS
ATGGCTACTGATACTATGGA+TGG 0.557940 1_3:-41992064 Msa0118790:CDS
CAAGTTGATCTCTTAATCAT+GGG 0.558572 1_3:-41990320 Msa0118790:CDS
GTGGAAGTGTTGATCAAGTG+AGG 0.562018 1_3:-41992198 Msa0118790:CDS
GTCACTTACACTTCCAAGGA+AGG 0.566492 1_3:+41990151 None:intergenic
CAGTAGCCATAACGTTGAAG+AGG 0.571035 1_3:+41992077 None:intergenic
CCTATACCTATGGGACCAGC+TGG 0.573743 1_3:-41991968 Msa0118790:CDS
GAGGTGCAGAAGAAAAGAGA+AGG 0.584561 1_3:-41992174 Msa0118790:CDS
TATGCATACCCTATACCTAT+GGG 0.588273 1_3:-41991977 Msa0118790:CDS
AATCTGCAGCTATTGCCTCA+CGG 0.590946 1_3:-41991547 Msa0118790:CDS
GTATAGGGTATGCATAAGTG+TGG 0.596401 1_3:+41991984 None:intergenic
ACGGGCTTTGCAAATGTGCA+AGG 0.605600 1_3:-41991528 Msa0118790:CDS
GATGAAGATGAAGGTGATGG+TGG 0.605709 1_3:-41992152 Msa0118790:CDS
ATATACTAACCAATACCAGC+TGG 0.608648 1_3:+41991953 None:intergenic
GGAAGTGTTGATCAAGTGAG+GGG 0.617330 1_3:-41992196 Msa0118790:CDS
ACAACATCTGAAAATGAGGA+GGG 0.619877 1_3:-41992040 Msa0118790:CDS
AACAACATCTGAAAATGAGG+AGG 0.624375 1_3:-41992041 Msa0118790:CDS
AACGTTGAAGAGGTTATCAA+GGG 0.625008 1_3:+41992087 None:intergenic
AAGGATGAAGATGAAGGTGA+TGG 0.645453 1_3:-41992155 Msa0118790:CDS
AAGCTTGTATGCTCTTAAGT+GGG 0.653871 1_3:-41992110 Msa0118790:CDS
GTGGCAATAGATGAGAGTGA+TGG 0.658459 1_3:-41992133 Msa0118790:CDS
CAACATCTGAAAATGAGGAG+GGG 0.662503 1_3:-41992039 Msa0118790:CDS
GCACATTTGCAAAGCCCGTG+AGG 0.665936 1_3:+41991532 None:intergenic
TCTCATTGTGAAGCCACCAG+AGG 0.677993 1_3:-41990099 Msa0118790:CDS
AGGGTGATGGAGGAAATAGG+TGG 0.693358 1_3:-41992217 None:intergenic
AGTGTTGATCAAGTGAGGGG+AGG 0.733239 1_3:-41992193 Msa0118790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATATAAAATATACAAT+TGG + chr1_3:41991397-41991416 None:intergenic 10.0%
!! CGTAAATATTAAATAAATTT+AGG + chr1_3:41991555-41991574 None:intergenic 10.0%
!! GTTAATATAAAATATACAAT+TGG + chr1_3:41991397-41991416 None:intergenic 10.0%
!! CGTAAATATTAAATAAATTT+AGG + chr1_3:41991555-41991574 None:intergenic 10.0%
!!! TTAATATTGTCTATTTTTCT+TGG - chr1_3:41990272-41990291 Msa0118790:intron 15.0%
!!! TGTTTTTATTTTTAGTATAG+AGG + chr1_3:41990907-41990926 None:intergenic 15.0%
!! AATAGGATAAATTAAATGAA+GGG + chr1_3:41990963-41990982 None:intergenic 15.0%
!! TAATAGGATAAATTAAATGA+AGG + chr1_3:41990964-41990983 None:intergenic 15.0%
!! GAATAATGACATTAATTAAT+AGG + chr1_3:41990980-41990999 None:intergenic 15.0%
!! AACTAAAATAATTTCTTTGA+CGG - chr1_3:41991249-41991268 Msa0118790:intron 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - chr1_3:41991630-41991649 Msa0118790:intron 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - chr1_3:41991919-41991938 Msa0118790:intron 15.0%
!!! TATTTCTAATTGAATAATCT+TGG - chr1_3:41992134-41992153 Msa0118790:CDS 15.0%
!! ATTTCTAATTGAATAATCTT+GGG - chr1_3:41992135-41992154 Msa0118790:CDS 15.0%
!!! TTAATATTGTCTATTTTTCT+TGG - chr1_3:41990272-41990291 Msa0118790:intron 15.0%
!!! TGTTTTTATTTTTAGTATAG+AGG + chr1_3:41990907-41990926 None:intergenic 15.0%
!! AATAGGATAAATTAAATGAA+GGG + chr1_3:41990963-41990982 None:intergenic 15.0%
!! TAATAGGATAAATTAAATGA+AGG + chr1_3:41990964-41990983 None:intergenic 15.0%
!! GAATAATGACATTAATTAAT+AGG + chr1_3:41990980-41990999 None:intergenic 15.0%
!! AACTAAAATAATTTCTTTGA+CGG - chr1_3:41991249-41991268 Msa0118790:intron 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - chr1_3:41991630-41991649 Msa0118790:intron 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - chr1_3:41991919-41991938 Msa0118790:intron 15.0%
!!! TATTTCTAATTGAATAATCT+TGG - chr1_3:41992134-41992153 Msa0118790:CDS 15.0%
!! ATTTCTAATTGAATAATCTT+GGG - chr1_3:41992135-41992154 Msa0118790:CDS 15.0%
!! GAATTAGACATGTAAAAAAA+AGG + chr1_3:41990208-41990227 None:intergenic 20.0%
!! AAAAATGATGTAACTTTGTA+AGG - chr1_3:41990241-41990260 Msa0118790:intron 20.0%
!!! GTTAATTGTCACTTATATTA+GGG + chr1_3:41990701-41990720 None:intergenic 20.0%
!!! AGTTAATTGTCACTTATATT+AGG + chr1_3:41990702-41990721 None:intergenic 20.0%
!! TTTCATGATAAACAGAAAAT+AGG - chr1_3:41990816-41990835 Msa0118790:intron 20.0%
!! TTCATGATAAACAGAAAATA+GGG - chr1_3:41990817-41990836 Msa0118790:intron 20.0%
!!! AAAGGAAGATTATTTTTTGA+AGG + chr1_3:41990878-41990897 None:intergenic 20.0%
!!! AAAATACCCTTCATTTTTTT+TGG - chr1_3:41990926-41990945 Msa0118790:intron 20.0%
!! TTGTAACCAAAAAAAATGAA+GGG + chr1_3:41990935-41990954 None:intergenic 20.0%
!! TTTGTAACCAAAAAAAATGA+AGG + chr1_3:41990936-41990955 None:intergenic 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - chr1_3:41991596-41991615 Msa0118790:CDS 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - chr1_3:41991890-41991909 Msa0118790:intron 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - chr1_3:41991922-41991941 Msa0118790:intron 20.0%
!! ATGTTTAAGTATATCTTCTA+TGG - chr1_3:41992058-41992077 Msa0118790:CDS 20.0%
!! TGTTTAAGTATATCTTCTAT+GGG - chr1_3:41992059-41992078 Msa0118790:CDS 20.0%
!! GAATTAGACATGTAAAAAAA+AGG + chr1_3:41990208-41990227 None:intergenic 20.0%
!! AAAAATGATGTAACTTTGTA+AGG - chr1_3:41990241-41990260 Msa0118790:intron 20.0%
!!! GTTAATTGTCACTTATATTA+GGG + chr1_3:41990701-41990720 None:intergenic 20.0%
!!! AGTTAATTGTCACTTATATT+AGG + chr1_3:41990702-41990721 None:intergenic 20.0%
!! TTTCATGATAAACAGAAAAT+AGG - chr1_3:41990816-41990835 Msa0118790:intron 20.0%
!! TTCATGATAAACAGAAAATA+GGG - chr1_3:41990817-41990836 Msa0118790:intron 20.0%
!!! AAAGGAAGATTATTTTTTGA+AGG + chr1_3:41990878-41990897 None:intergenic 20.0%
!!! AAAATACCCTTCATTTTTTT+TGG - chr1_3:41990926-41990945 Msa0118790:intron 20.0%
!! TTGTAACCAAAAAAAATGAA+GGG + chr1_3:41990935-41990954 None:intergenic 20.0%
!! TTTGTAACCAAAAAAAATGA+AGG + chr1_3:41990936-41990955 None:intergenic 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - chr1_3:41991596-41991615 Msa0118790:CDS 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - chr1_3:41991890-41991909 Msa0118790:intron 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - chr1_3:41991922-41991941 Msa0118790:intron 20.0%
!! ATGTTTAAGTATATCTTCTA+TGG - chr1_3:41992058-41992077 Msa0118790:CDS 20.0%
!! TGTTTAAGTATATCTTCTAT+GGG - chr1_3:41992059-41992078 Msa0118790:CDS 20.0%
!!! GGGAATGAACAATTTTAAAA+GGG + chr1_3:41990681-41990700 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + chr1_3:41990682-41990701 None:intergenic 25.0%
! TCATGATAAACAGAAAATAG+GGG - chr1_3:41990818-41990837 Msa0118790:intron 25.0%
!!! GAAGATTATTTTTTGAAGGA+AGG + chr1_3:41990874-41990893 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + chr1_3:41991140-41991159 None:intergenic 25.0%
! GTAATATTGCATATGTTAGA+CGG - chr1_3:41991494-41991513 Msa0118790:intron 25.0%
!!! ACTATGATCAATGCTTTTTA+TGG + chr1_3:41992032-41992051 None:intergenic 25.0%
!!! GGGAATGAACAATTTTAAAA+GGG + chr1_3:41990681-41990700 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + chr1_3:41990682-41990701 None:intergenic 25.0%
! TCATGATAAACAGAAAATAG+GGG - chr1_3:41990818-41990837 Msa0118790:intron 25.0%
!!! GAAGATTATTTTTTGAAGGA+AGG + chr1_3:41990874-41990893 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + chr1_3:41991140-41991159 None:intergenic 25.0%
! GTAATATTGCATATGTTAGA+CGG - chr1_3:41991494-41991513 Msa0118790:intron 25.0%
!!! ACTATGATCAATGCTTTTTA+TGG + chr1_3:41992032-41992051 None:intergenic 25.0%
TATGCATAAGTGTGGAAATT+TGG + chr1_3:41990112-41990131 None:intergenic 30.0%
AACTTACACAAGTGTATTCT+CGG + chr1_3:41990383-41990402 None:intergenic 30.0%
! CAAAGTATCACACAAGAAAA+AGG + chr1_3:41990465-41990484 None:intergenic 30.0%
TTCCCATTCCTTTATATCAA+CGG + chr1_3:41990762-41990781 None:intergenic 30.0%
CATGATAAACAGAAAATAGG+GGG - chr1_3:41990819-41990838 Msa0118790:intron 30.0%
!! AAAGGAAGATGATTGCTTTT+TGG + chr1_3:41990845-41990864 None:intergenic 30.0%
TTAGTATAGAGGAAAGTGAA+AGG + chr1_3:41990896-41990915 None:intergenic 30.0%
! ACGGAAGTGTATTAAATCTA+TGG - chr1_3:41991268-41991287 Msa0118790:intron 30.0%
! CGGAAGTGTATTAAATCTAT+GGG - chr1_3:41991269-41991288 Msa0118790:intron 30.0%
GGTAGAAGCTACATAAATTA+TGG - chr1_3:41991617-41991636 Msa0118790:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + chr1_3:41991680-41991699 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + chr1_3:41991686-41991705 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - chr1_3:41991781-41991800 Msa0118790:intron 30.0%
TTTCATTTATGCATGGTTGA+TGG - chr1_3:41991897-41991916 Msa0118790:intron 30.0%
TAAGTATATCTTCTATGGGA+TGG - chr1_3:41992063-41992082 Msa0118790:CDS 30.0%
TATGCATAAGTGTGGAAATT+TGG + chr1_3:41990112-41990131 None:intergenic 30.0%
AACTTACACAAGTGTATTCT+CGG + chr1_3:41990383-41990402 None:intergenic 30.0%
! CAAAGTATCACACAAGAAAA+AGG + chr1_3:41990465-41990484 None:intergenic 30.0%
TTCCCATTCCTTTATATCAA+CGG + chr1_3:41990762-41990781 None:intergenic 30.0%
CATGATAAACAGAAAATAGG+GGG - chr1_3:41990819-41990838 Msa0118790:intron 30.0%
!! AAAGGAAGATGATTGCTTTT+TGG + chr1_3:41990845-41990864 None:intergenic 30.0%
TTAGTATAGAGGAAAGTGAA+AGG + chr1_3:41990896-41990915 None:intergenic 30.0%
! ACGGAAGTGTATTAAATCTA+TGG - chr1_3:41991268-41991287 Msa0118790:intron 30.0%
! CGGAAGTGTATTAAATCTAT+GGG - chr1_3:41991269-41991288 Msa0118790:intron 30.0%
GGTAGAAGCTACATAAATTA+TGG - chr1_3:41991617-41991636 Msa0118790:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + chr1_3:41991680-41991699 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + chr1_3:41991686-41991705 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - chr1_3:41991781-41991800 Msa0118790:intron 30.0%
TTTCATTTATGCATGGTTGA+TGG - chr1_3:41991897-41991916 Msa0118790:intron 30.0%
TAAGTATATCTTCTATGGGA+TGG - chr1_3:41992063-41992082 Msa0118790:CDS 30.0%
AAAGAGAAGGATGAAGATGA+AGG - chr1_3:41989940-41989959 Msa0118790:three_prime_UTR 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - chr1_3:41989991-41990010 Msa0118790:three_prime_UTR 35.0%
AACGTTGAAGAGGTTATCAA+GGG + chr1_3:41990017-41990036 None:intergenic 35.0%
TAACGTTGAAGAGGTTATCA+AGG + chr1_3:41990018-41990037 None:intergenic 35.0%
TGATAACCTCTTCAACGTTA+TGG - chr1_3:41990018-41990037 Msa0118790:three_prime_UTR 35.0%
TGGAACAACATCTGAAAATG+AGG - chr1_3:41990057-41990076 Msa0118790:three_prime_UTR 35.0%
AACAACATCTGAAAATGAGG+AGG - chr1_3:41990060-41990079 Msa0118790:exon 35.0%
ACAACATCTGAAAATGAGGA+GGG - chr1_3:41990061-41990080 Msa0118790:exon 35.0%
TTATGCATACCCTATACCTA+TGG - chr1_3:41990123-41990142 Msa0118790:CDS 35.0%
TATGCATACCCTATACCTAT+GGG - chr1_3:41990124-41990143 Msa0118790:CDS 35.0%
ATATACTAACCAATACCAGC+TGG + chr1_3:41990151-41990170 None:intergenic 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + chr1_3:41990188-41990207 None:intergenic 35.0%
GCAGAAATGAGAAAATCAGA+TGG + chr1_3:41990329-41990348 None:intergenic 35.0%
TTCTCGGTATGATTTAACTC+AGG + chr1_3:41990367-41990386 None:intergenic 35.0%
TGTGTAAGTTAATTCACGCT+CGG - chr1_3:41990393-41990412 Msa0118790:intron 35.0%
GGGAATGAGCAAAAATAGAT+GGG - chr1_3:41990426-41990445 Msa0118790:intron 35.0%
ATGGATAAACAGCTGTTGAA+AGG + chr1_3:41990489-41990508 None:intergenic 35.0%
AGTTACTGCCGTTGATATAA+AGG - chr1_3:41990751-41990770 Msa0118790:intron 35.0%
TGCCGTTGATATAAAGGAAT+GGG - chr1_3:41990757-41990776 Msa0118790:intron 35.0%
TTTGAAGGAAGGAAAGTGAA+AGG + chr1_3:41990863-41990882 None:intergenic 35.0%
ACAAACATTATTCTCTCGTC+AGG - chr1_3:41991046-41991065 Msa0118790:intron 35.0%
CGTCAGGTTAGTAAAATCAA+CGG - chr1_3:41991062-41991081 Msa0118790:intron 35.0%
AAGTATGCATCAATGAAAGC+AGG - chr1_3:41991690-41991709 Msa0118790:intron 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - chr1_3:41991718-41991737 Msa0118790:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - chr1_3:41991744-41991763 Msa0118790:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - chr1_3:41991780-41991799 Msa0118790:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + chr1_3:41991957-41991976 None:intergenic 35.0%
AAAGAGAAGGATGAAGATGA+AGG - chr1_3:41989940-41989959 Msa0118790:three_prime_UTR 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - chr1_3:41989991-41990010 Msa0118790:three_prime_UTR 35.0%
AACGTTGAAGAGGTTATCAA+GGG + chr1_3:41990017-41990036 None:intergenic 35.0%
TAACGTTGAAGAGGTTATCA+AGG + chr1_3:41990018-41990037 None:intergenic 35.0%
TGATAACCTCTTCAACGTTA+TGG - chr1_3:41990018-41990037 Msa0118790:three_prime_UTR 35.0%
TGGAACAACATCTGAAAATG+AGG - chr1_3:41990057-41990076 Msa0118790:three_prime_UTR 35.0%
AACAACATCTGAAAATGAGG+AGG - chr1_3:41990060-41990079 Msa0118790:exon 35.0%
ACAACATCTGAAAATGAGGA+GGG - chr1_3:41990061-41990080 Msa0118790:exon 35.0%
TTATGCATACCCTATACCTA+TGG - chr1_3:41990123-41990142 Msa0118790:CDS 35.0%
TATGCATACCCTATACCTAT+GGG - chr1_3:41990124-41990143 Msa0118790:CDS 35.0%
ATATACTAACCAATACCAGC+TGG + chr1_3:41990151-41990170 None:intergenic 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + chr1_3:41990188-41990207 None:intergenic 35.0%
GCAGAAATGAGAAAATCAGA+TGG + chr1_3:41990329-41990348 None:intergenic 35.0%
TTCTCGGTATGATTTAACTC+AGG + chr1_3:41990367-41990386 None:intergenic 35.0%
TGTGTAAGTTAATTCACGCT+CGG - chr1_3:41990393-41990412 Msa0118790:intron 35.0%
GGGAATGAGCAAAAATAGAT+GGG - chr1_3:41990426-41990445 Msa0118790:intron 35.0%
ATGGATAAACAGCTGTTGAA+AGG + chr1_3:41990489-41990508 None:intergenic 35.0%
AGTTACTGCCGTTGATATAA+AGG - chr1_3:41990751-41990770 Msa0118790:intron 35.0%
TGCCGTTGATATAAAGGAAT+GGG - chr1_3:41990757-41990776 Msa0118790:intron 35.0%
TTTGAAGGAAGGAAAGTGAA+AGG + chr1_3:41990863-41990882 None:intergenic 35.0%
ACAAACATTATTCTCTCGTC+AGG - chr1_3:41991046-41991065 Msa0118790:intron 35.0%
CGTCAGGTTAGTAAAATCAA+CGG - chr1_3:41991062-41991081 Msa0118790:intron 35.0%
AAGTATGCATCAATGAAAGC+AGG - chr1_3:41991690-41991709 Msa0118790:intron 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - chr1_3:41991718-41991737 Msa0118790:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - chr1_3:41991744-41991763 Msa0118790:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - chr1_3:41991780-41991799 Msa0118790:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + chr1_3:41991957-41991976 None:intergenic 35.0%
!! TGGAAGTGTTGATCAAGTGA+GGG - chr1_3:41989904-41989923 Msa0118790:three_prime_UTR 40.0%
AAGGATGAAGATGAAGGTGA+TGG - chr1_3:41989946-41989965 Msa0118790:three_prime_UTR 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - chr1_3:41989990-41990009 Msa0118790:three_prime_UTR 40.0%
CGTTATGGCTACTGATACTA+TGG - chr1_3:41990033-41990052 Msa0118790:three_prime_UTR 40.0%
ATGGCTACTGATACTATGGA+TGG - chr1_3:41990037-41990056 Msa0118790:three_prime_UTR 40.0%
CAACATCTGAAAATGAGGAG+GGG - chr1_3:41990062-41990081 Msa0118790:exon 40.0%
GTATAGGGTATGCATAAGTG+TGG + chr1_3:41990120-41990139 None:intergenic 40.0%
CAGATGGAAGAAGAGCAATT+TGG + chr1_3:41990313-41990332 None:intergenic 40.0%
CGGGAATGAGCAAAAATAGA+TGG - chr1_3:41990425-41990444 Msa0118790:intron 40.0%
TATCCATCAACACCTGAAGT+TGG - chr1_3:41990502-41990521 Msa0118790:intron 40.0%
ATCCATCAACACCTGAAGTT+GGG - chr1_3:41990503-41990522 Msa0118790:intron 40.0%
TTCAAAGAATCCCCAACTTC+AGG + chr1_3:41990517-41990536 None:intergenic 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + chr1_3:41990545-41990564 None:intergenic 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + chr1_3:41990546-41990565 None:intergenic 40.0%
CTGCCGTTGATATAAAGGAA+TGG - chr1_3:41990756-41990775 Msa0118790:intron 40.0%
GAAATGAGTCTCGCTTTACA+AGG + chr1_3:41991197-41991216 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + chr1_3:41991219-41991238 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + chr1_3:41991816-41991835 None:intergenic 40.0%
! GGCTAAGTCTGGAATAATCT+TGG - chr1_3:41992084-41992103 Msa0118790:CDS 40.0%
!! TGGAAGTGTTGATCAAGTGA+GGG - chr1_3:41989904-41989923 Msa0118790:three_prime_UTR 40.0%
AAGGATGAAGATGAAGGTGA+TGG - chr1_3:41989946-41989965 Msa0118790:three_prime_UTR 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - chr1_3:41989990-41990009 Msa0118790:three_prime_UTR 40.0%
CGTTATGGCTACTGATACTA+TGG - chr1_3:41990033-41990052 Msa0118790:three_prime_UTR 40.0%
ATGGCTACTGATACTATGGA+TGG - chr1_3:41990037-41990056 Msa0118790:three_prime_UTR 40.0%
CAACATCTGAAAATGAGGAG+GGG - chr1_3:41990062-41990081 Msa0118790:exon 40.0%
GTATAGGGTATGCATAAGTG+TGG + chr1_3:41990120-41990139 None:intergenic 40.0%
CAGATGGAAGAAGAGCAATT+TGG + chr1_3:41990313-41990332 None:intergenic 40.0%
CGGGAATGAGCAAAAATAGA+TGG - chr1_3:41990425-41990444 Msa0118790:intron 40.0%
TATCCATCAACACCTGAAGT+TGG - chr1_3:41990502-41990521 Msa0118790:intron 40.0%
ATCCATCAACACCTGAAGTT+GGG - chr1_3:41990503-41990522 Msa0118790:intron 40.0%
TTCAAAGAATCCCCAACTTC+AGG + chr1_3:41990517-41990536 None:intergenic 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + chr1_3:41990545-41990564 None:intergenic 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + chr1_3:41990546-41990565 None:intergenic 40.0%
CTGCCGTTGATATAAAGGAA+TGG - chr1_3:41990756-41990775 Msa0118790:intron 40.0%
GAAATGAGTCTCGCTTTACA+AGG + chr1_3:41991197-41991216 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + chr1_3:41991219-41991238 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + chr1_3:41991816-41991835 None:intergenic 40.0%
! GGCTAAGTCTGGAATAATCT+TGG - chr1_3:41992084-41992103 Msa0118790:CDS 40.0%
!! GTGGAAGTGTTGATCAAGTG+AGG - chr1_3:41989903-41989922 Msa0118790:three_prime_UTR 45.0%
!! GGAAGTGTTGATCAAGTGAG+GGG - chr1_3:41989905-41989924 Msa0118790:three_prime_UTR 45.0%
GAGGTGCAGAAGAAAAGAGA+AGG - chr1_3:41989927-41989946 Msa0118790:three_prime_UTR 45.0%
! GATGAAGATGAAGGTGATGG+TGG - chr1_3:41989949-41989968 Msa0118790:three_prime_UTR 45.0%
GTGGCAATAGATGAGAGTGA+TGG - chr1_3:41989968-41989987 Msa0118790:three_prime_UTR 45.0%
CAGTAGCCATAACGTTGAAG+AGG + chr1_3:41990027-41990046 None:intergenic 45.0%
ATCTGAAAATGAGGAGGGGA+TGG - chr1_3:41990066-41990085 Msa0118790:exon 45.0%
!! TTCACGCTCGGCTATTTTGA+CGG - chr1_3:41990405-41990424 Msa0118790:intron 45.0%
TCCATCAACACCTGAAGTTG+GGG - chr1_3:41990504-41990523 Msa0118790:intron 45.0%
AATCTGCAGCTATTGCCTCA+CGG - chr1_3:41990554-41990573 Msa0118790:intron 45.0%
GCAAATGTGCAAGGATAAGC+AGG - chr1_3:41990582-41990601 Msa0118790:intron 45.0%
AGCGAGACTCATTTCCTTGA+CGG - chr1_3:41991202-41991221 Msa0118790:intron 45.0%
CTCTTAATCATGGGTAGTCG+TGG - chr1_3:41991790-41991809 Msa0118790:intron 45.0%
GTCACTTACACTTCCAAGGA+AGG + chr1_3:41991953-41991972 None:intergenic 45.0%
GGTGGCTTCACAATGAGAAT+AGG + chr1_3:41992000-41992019 None:intergenic 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + chr1_3:41992018-41992037 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + chr1_3:41992021-41992040 None:intergenic 45.0%
TTCTATGGGATGGCTAAGTC+TGG - chr1_3:41992073-41992092 Msa0118790:CDS 45.0%
!! GTGGAAGTGTTGATCAAGTG+AGG - chr1_3:41989903-41989922 Msa0118790:three_prime_UTR 45.0%
!! GGAAGTGTTGATCAAGTGAG+GGG - chr1_3:41989905-41989924 Msa0118790:three_prime_UTR 45.0%
GAGGTGCAGAAGAAAAGAGA+AGG - chr1_3:41989927-41989946 Msa0118790:three_prime_UTR 45.0%
! GATGAAGATGAAGGTGATGG+TGG - chr1_3:41989949-41989968 Msa0118790:three_prime_UTR 45.0%
GTGGCAATAGATGAGAGTGA+TGG - chr1_3:41989968-41989987 Msa0118790:three_prime_UTR 45.0%
CAGTAGCCATAACGTTGAAG+AGG + chr1_3:41990027-41990046 None:intergenic 45.0%
ATCTGAAAATGAGGAGGGGA+TGG - chr1_3:41990066-41990085 Msa0118790:exon 45.0%
!! TTCACGCTCGGCTATTTTGA+CGG - chr1_3:41990405-41990424 Msa0118790:intron 45.0%
TCCATCAACACCTGAAGTTG+GGG - chr1_3:41990504-41990523 Msa0118790:intron 45.0%
AATCTGCAGCTATTGCCTCA+CGG - chr1_3:41990554-41990573 Msa0118790:intron 45.0%
GCAAATGTGCAAGGATAAGC+AGG - chr1_3:41990582-41990601 Msa0118790:intron 45.0%
AGCGAGACTCATTTCCTTGA+CGG - chr1_3:41991202-41991221 Msa0118790:intron 45.0%
CTCTTAATCATGGGTAGTCG+TGG - chr1_3:41991790-41991809 Msa0118790:intron 45.0%
GTCACTTACACTTCCAAGGA+AGG + chr1_3:41991953-41991972 None:intergenic 45.0%
GGTGGCTTCACAATGAGAAT+AGG + chr1_3:41992000-41992019 None:intergenic 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + chr1_3:41992018-41992037 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + chr1_3:41992021-41992040 None:intergenic 45.0%
TTCTATGGGATGGCTAAGTC+TGG - chr1_3:41992073-41992092 Msa0118790:CDS 45.0%
!!! AGTTTTTTTTTTTTTTTTTA+CGG + chr1_3:41991233-41991252 None:intergenic 5.0%
!!! AGTTTTTTTTTTTTTTTTTA+CGG + chr1_3:41991233-41991252 None:intergenic 5.0%
!! AGTGTTGATCAAGTGAGGGG+AGG - chr1_3:41989908-41989927 Msa0118790:three_prime_UTR 50.0%
CAGCTGGTCCCATAGGTATA+GGG + chr1_3:41990135-41990154 None:intergenic 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr1_3:41990406-41990425 Msa0118790:intron 50.0%
!! TCCCCAACTTCAGGTGTTGA+TGG + chr1_3:41990508-41990527 None:intergenic 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - chr1_3:41990555-41990574 Msa0118790:intron 50.0%
ACGGGCTTTGCAAATGTGCA+AGG - chr1_3:41990573-41990592 Msa0118790:intron 50.0%
TGTGCAAGGATAAGCAGGTG+CGG - chr1_3:41990587-41990606 Msa0118790:intron 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - chr1_3:41991809-41991828 Msa0118790:intron 50.0%
TCTCATTGTGAAGCCACCAG+AGG - chr1_3:41992002-41992021 Msa0118790:CDS 50.0%
!! AGTGTTGATCAAGTGAGGGG+AGG - chr1_3:41989908-41989927 Msa0118790:three_prime_UTR 50.0%
CAGCTGGTCCCATAGGTATA+GGG + chr1_3:41990135-41990154 None:intergenic 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr1_3:41990406-41990425 Msa0118790:intron 50.0%
!! TCCCCAACTTCAGGTGTTGA+TGG + chr1_3:41990508-41990527 None:intergenic 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - chr1_3:41990555-41990574 Msa0118790:intron 50.0%
ACGGGCTTTGCAAATGTGCA+AGG - chr1_3:41990573-41990592 Msa0118790:intron 50.0%
TGTGCAAGGATAAGCAGGTG+CGG - chr1_3:41990587-41990606 Msa0118790:intron 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - chr1_3:41991809-41991828 Msa0118790:intron 50.0%
TCTCATTGTGAAGCCACCAG+AGG - chr1_3:41992002-41992021 Msa0118790:CDS 50.0%
CCAGCTGGTCCCATAGGTAT+AGG + chr1_3:41990136-41990155 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - chr1_3:41990133-41990152 Msa0118790:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + chr1_3:41990142-41990161 None:intergenic 55.0%
CCTATGGGACCAGCTGGTAT+TGG - chr1_3:41990139-41990158 Msa0118790:CDS 55.0%
GCACATTTGCAAAGCCCGTG+AGG + chr1_3:41990572-41990591 None:intergenic 55.0%
ATCATGGGTAGTCGTGGCCT+TGG - chr1_3:41991796-41991815 Msa0118790:intron 55.0%
! TTTGGTGGCAGAGCCTTCCT+TGG - chr1_3:41991937-41991956 Msa0118790:intron 55.0%
CCAGCTGGTCCCATAGGTAT+AGG + chr1_3:41990136-41990155 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - chr1_3:41990133-41990152 Msa0118790:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + chr1_3:41990142-41990161 None:intergenic 55.0%
CCTATGGGACCAGCTGGTAT+TGG - chr1_3:41990139-41990158 Msa0118790:CDS 55.0%
GCACATTTGCAAAGCCCGTG+AGG + chr1_3:41990572-41990591 None:intergenic 55.0%
ATCATGGGTAGTCGTGGCCT+TGG - chr1_3:41991796-41991815 Msa0118790:intron 55.0%
! TTTGGTGGCAGAGCCTTCCT+TGG - chr1_3:41991937-41991956 Msa0118790:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 41989890 41992233 41989890 ID=Msa0118790;Name=Msa0118790
chr1_3 mRNA 41989890 41992233 41989890 ID=Msa0118790-mRNA-1;Parent=Msa0118790;Name=Msa0118790-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|1|0.75|1|1|1|4|189|197
chr1_3 exon 41989890 41990175 41989890 ID=Msa0118790-mRNA-1:exon:12735;Parent=Msa0118790-mRNA-1
chr1_3 exon 41990293 41990411 41990293 ID=Msa0118790-mRNA-1:exon:12734;Parent=Msa0118790-mRNA-1
chr1_3 exon 41991520 41991626 41991520 ID=Msa0118790-mRNA-1:exon:12733;Parent=Msa0118790-mRNA-1
chr1_3 exon 41991963 41992233 41991963 ID=Msa0118790-mRNA-1:exon:12732;Parent=Msa0118790-mRNA-1
chr1_3 CDS 41991963 41992233 41991963 ID=Msa0118790-mRNA-1:cds;Parent=Msa0118790-mRNA-1
chr1_3 CDS 41991520 41991626 41991520 ID=Msa0118790-mRNA-1:cds;Parent=Msa0118790-mRNA-1
chr1_3 CDS 41990293 41990411 41990293 ID=Msa0118790-mRNA-1:cds;Parent=Msa0118790-mRNA-1
chr1_3 CDS 41990079 41990175 41990079 ID=Msa0118790-mRNA-1:cds;Parent=Msa0118790-mRNA-1
chr1_3 three_prime_UTR 41989890 41990078 41989890 ID=Msa0118790-mRNA-1:three_prime_utr;Parent=Msa0118790-mRNA-1
Gene Sequence

>Msa0118790

ATGGAGGAAATAGGTGGAAGTGTTGATCAAGTGAGGGGAGGTGCAGAAGAAAAGAGAAGGATGAAGATGAAGGTGATGGTGGCAATAGATGAGAGTGATGGAAGCTTGTATGCTCTTAAGTGGGCCCTTGATAACCTCTTCAACGTTATGGCTACTGATACTATGGATGGAACAACATCTGAAAATGAGGAGGGGATGGTGTTTCTTGTTCATGTTGAGCCAAATTTCCACACTTATGCATACCCTATACCTATGGGACCAGCTGGTATTGCTGTTTATCCATCAACACCTGAAGTTGGGGATTCTTTGAAGAAAGCCCAGCAAGAAAAATCTGCAGCTATTGCCTCACGGGCTTTGCAAATGTGCAAGGATAAGCAGGTAAAAGCAGAAAGTGTGATTCTTAATGGAGATGCAAGAGAAATGATTAGTCAGGCTACAGAGAAAATGCAAGTTGATCTCTTAATCATGGGTAGTCGTGGCCTTGGCAAACTCAAAAGAGCCTTCCTTGGAAGTGTAAGTGACTATTGTGCACATCATGCAAAAGCACCTATTCTCATTGTGAAGCCACCAGAGGAGCACCATAAAAAGCATTGA
Protein sequence

>Msa0118790

MEEIGGSVDQVRGGAEEKRRMKMKVMVAIDESDGSLYALKWALDNLFNVMATDTMDGTTSENEEGMVFLVHVEPNFHTYAYPIPMGPAGIAVYPSTPEVGDSLKKAQQEKSAAIASRALQMCKDKQVKAESVILNGDAREMISQATEKMQVDLLIMGSRGLGKLKRAFLGSVSDYCAHHAKAPILIVKPPEEHHKKH*