Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023050 | sp|Q8LGG8|USPAL_ARATH | 41.071 | 56 | 33 | 0 | 182 | 237 | 107 | 162 | 2.98e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0023050 | 0.856121 | 3.985097e-62 | -8.615850e-47 |
| Msa0023010 | Msa0023050 | 0.913766 | 4.201811e-84 | -8.615850e-47 |
| Msa0023040 | Msa0023050 | 0.890933 | 6.294070e-74 | -8.615850e-47 |
| Msa0023050 | Msa0026680 | 0.805882 | 1.076956e-49 | -8.615850e-47 |
| Msa0023050 | Msa0070860 | 0.864099 | 1.551009e-64 | -8.615850e-47 |
| Msa0023050 | Msa0118790 | 0.882396 | 1.078784e-70 | -8.615850e-47 |
| Msa0023050 | Msa0118810 | 0.824913 | 6.236836e-54 | -8.615850e-47 |
| Msa0023050 | Msa0145080 | 0.809451 | 1.879592e-50 | -8.615850e-47 |
| Msa0023050 | Msa0156370 | 0.846863 | 1.662656e-59 | -8.615850e-47 |
| Msa0023050 | Msa0162120 | 0.882528 | 9.655924e-71 | -8.615850e-47 |
| Msa0023050 | Msa0162130 | 0.810149 | 1.330262e-50 | -8.615850e-47 |
| Msa0023050 | Msa0355140 | 0.806902 | 6.564648e-50 | -8.615850e-47 |
| Msa0023050 | Msa0402210 | 0.820921 | 5.313564e-53 | -8.615850e-47 |
| Msa0023050 | Msa0469560 | -0.818215 | 2.202217e-52 | -8.615850e-47 |
| Msa0023050 | Msa0483770 | 0.809205 | 2.123067e-50 | -8.615850e-47 |
| Msa0023050 | Msa0515270 | -0.827825 | 1.262828e-54 | -8.615850e-47 |
| Msa0023050 | Msa0550120 | 0.850973 | 1.200697e-60 | -8.615850e-47 |
| Msa0023050 | Msa0550150 | 0.843047 | 1.781564e-58 | -8.615850e-47 |
| Msa0023050 | Msa0588260 | 0.819974 | 8.760895e-53 | -8.615850e-47 |
| Msa0023050 | Msa0605630 | 0.846822 | 1.705859e-59 | -8.615850e-47 |
| Msa0023050 | Msa0605650 | 0.858245 | 9.403814e-63 | -8.615850e-47 |
| Msa0023050 | Msa0646580 | 0.868873 | 4.723271e-66 | -8.615850e-47 |
| Msa0023050 | Msa0686210 | 0.813562 | 2.403474e-51 | -8.615850e-47 |
| Msa0023050 | Msa0686220 | 0.804462 | 2.135544e-49 | -8.615850e-47 |
| Msa0023050 | Msa0764680 | -0.806403 | 8.367586e-50 | -8.615850e-47 |
| Msa0023050 | Msa0818750 | 0.809639 | 1.713467e-50 | -8.615850e-47 |
| Msa0023050 | Msa0867730 | 0.849151 | 3.885688e-60 | -8.615850e-47 |
| Msa0023050 | Msa1212190 | 0.812243 | 4.675388e-51 | -8.615850e-47 |
| Msa0023050 | Msa1212270 | 0.815416 | 9.351148e-52 | -8.615850e-47 |
| Msa0023050 | Msa1259910 | 0.814914 | 1.208473e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023050 | MtrunA17_Chr1g0176321 | 88.136 | 177 | 11 | 1 | 80 | 246 | 1 | 177 | 2.96e-115 | 327 |
| Msa0023050 | MtrunA17_Chr1g0176321 | 80.263 | 76 | 5 | 1 | 14 | 79 | 71 | 146 | 8.60e-33 | 117 |
| Msa0023050 | MtrunA17_Chr1g0176311 | 75.978 | 179 | 27 | 5 | 78 | 246 | 18 | 190 | 3.28e-91 | 267 |
| Msa0023050 | MtrunA17_Chr1g0176311 | 67.105 | 76 | 14 | 2 | 14 | 79 | 85 | 159 | 2.84e-24 | 95.9 |
| Msa0023050 | MtrunA17_Chr1g0195661 | 36.932 | 176 | 85 | 5 | 78 | 243 | 8 | 167 | 2.39e-29 | 108 |
| Msa0023050 | MtrunA17_Chr1g0192651 | 36.527 | 167 | 79 | 3 | 83 | 240 | 10 | 158 | 3.39e-29 | 107 |
| Msa0023050 | MtrunA17_Chr1g0194801 | 35.227 | 176 | 83 | 5 | 77 | 239 | 1 | 158 | 7.66e-28 | 104 |
| Msa0023050 | MtrunA17_Chr5g0427291 | 35.465 | 172 | 82 | 7 | 84 | 237 | 10 | 170 | 3.68e-25 | 97.8 |
| Msa0023050 | MtrunA17_Chr7g0269301 | 36.471 | 170 | 87 | 5 | 81 | 243 | 7 | 162 | 1.97e-21 | 87.4 |
| Msa0023050 | MtrunA17_Chr2g0323291 | 31.034 | 174 | 91 | 4 | 83 | 241 | 26 | 185 | 4.55e-19 | 82.8 |
| Msa0023050 | MtrunA17_Chr4g0032261 | 33.133 | 166 | 86 | 5 | 83 | 237 | 6 | 157 | 3.54e-18 | 79.0 |
| Msa0023050 | MtrunA17_Chr4g0001641 | 50.000 | 56 | 28 | 0 | 182 | 237 | 10 | 65 | 4.58e-17 | 73.6 |
| Msa0023050 | MtrunA17_Chr5g0433951 | 30.769 | 182 | 85 | 7 | 84 | 246 | 7 | 166 | 9.52e-17 | 75.1 |
| Msa0023050 | MtrunA17_Chr2g0294421 | 31.548 | 168 | 98 | 4 | 83 | 243 | 6 | 163 | 2.35e-16 | 74.3 |
| Msa0023050 | MtrunA17_Chr4g0008801 | 30.864 | 162 | 89 | 5 | 86 | 237 | 9 | 157 | 3.76e-13 | 65.5 |
| Msa0023050 | MtrunA17_Chr6g0450171 | 41.071 | 56 | 33 | 0 | 182 | 237 | 107 | 162 | 9.25e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023050 | AT3G11930.1 | 54.070 | 172 | 63 | 4 | 83 | 244 | 34 | 199 | 3.95e-59 | 186 |
| Msa0023050 | AT3G11930.1 | 53.247 | 77 | 26 | 1 | 13 | 79 | 94 | 170 | 2.81e-18 | 80.5 |
| Msa0023050 | AT3G11930.2 | 54.335 | 173 | 62 | 5 | 83 | 244 | 34 | 200 | 4.60e-58 | 183 |
| Msa0023050 | AT3G11930.2 | 55.263 | 76 | 23 | 2 | 14 | 79 | 97 | 171 | 4.12e-18 | 80.1 |
| Msa0023050 | AT3G11930.4 | 54.023 | 174 | 62 | 5 | 83 | 244 | 34 | 201 | 9.01e-58 | 182 |
| Msa0023050 | AT3G11930.4 | 54.545 | 77 | 24 | 2 | 13 | 79 | 97 | 172 | 3.45e-18 | 80.5 |
| Msa0023050 | AT3G11930.3 | 47.236 | 199 | 62 | 6 | 83 | 244 | 34 | 226 | 5.09e-52 | 169 |
| Msa0023050 | AT3G11930.3 | 55.263 | 76 | 23 | 2 | 14 | 79 | 97 | 171 | 6.52e-18 | 80.1 |
| Msa0023050 | AT3G58450.1 | 50.000 | 168 | 67 | 4 | 84 | 241 | 32 | 192 | 2.18e-47 | 156 |
| Msa0023050 | AT3G58450.1 | 44.444 | 72 | 30 | 1 | 18 | 79 | 95 | 166 | 1.28e-12 | 65.1 |
| Msa0023050 | AT3G58450.2 | 48.214 | 168 | 63 | 4 | 84 | 241 | 32 | 185 | 4.96e-45 | 150 |
| Msa0023050 | AT3G58450.2 | 45.455 | 77 | 30 | 2 | 15 | 79 | 83 | 159 | 1.73e-13 | 67.4 |
| Msa0023050 | AT2G47710.1 | 37.126 | 167 | 84 | 5 | 81 | 240 | 7 | 159 | 1.68e-26 | 101 |
| Msa0023050 | AT3G62550.1 | 35.294 | 170 | 74 | 5 | 83 | 237 | 8 | 156 | 3.82e-26 | 100 |
| Msa0023050 | AT1G09740.2 | 35.838 | 173 | 82 | 5 | 84 | 241 | 10 | 168 | 8.21e-26 | 99.8 |
| Msa0023050 | AT1G09740.1 | 35.838 | 173 | 82 | 5 | 84 | 241 | 10 | 168 | 8.21e-26 | 99.8 |
| Msa0023050 | AT1G68300.1 | 34.731 | 167 | 87 | 4 | 78 | 237 | 6 | 157 | 8.99e-20 | 83.6 |
| Msa0023050 | AT3G03270.2 | 32.948 | 173 | 75 | 5 | 84 | 237 | 7 | 157 | 6.26e-16 | 73.2 |
| Msa0023050 | AT3G17020.1 | 31.737 | 167 | 88 | 6 | 83 | 237 | 8 | 160 | 8.23e-15 | 70.5 |
| Msa0023050 | AT1G11360.2 | 28.000 | 175 | 98 | 4 | 81 | 241 | 37 | 197 | 2.16e-14 | 70.9 |
| Msa0023050 | AT1G11360.1 | 28.000 | 175 | 98 | 4 | 81 | 241 | 37 | 197 | 2.16e-14 | 70.9 |
| Msa0023050 | AT1G11360.4 | 28.000 | 175 | 98 | 4 | 81 | 241 | 37 | 197 | 2.16e-14 | 70.9 |
| Msa0023050 | AT1G11360.3 | 28.000 | 175 | 98 | 4 | 81 | 241 | 37 | 197 | 2.16e-14 | 70.9 |
| Msa0023050 | AT3G01520.1 | 41.071 | 56 | 33 | 0 | 182 | 237 | 107 | 162 | 3.03e-13 | 66.2 |
| Msa0023050 | AT5G14680.1 | 41.071 | 56 | 33 | 0 | 182 | 237 | 107 | 162 | 1.26e-12 | 64.7 |
Find 73 sgRNAs with CRISPR-Local
Find 478 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGATACTA+TGG | 0.183037 | 1_1:-43674694 | Msa0023050:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1_1:-43672841 | Msa0023050:intron |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1_1:-43678670 | Msa0023050:intron |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1_1:+43674618 | None:intergenic |
| TTCAAAGAATCTGCAACTTC+AGG | 0.297788 | 1_1:+43680127 | None:intergenic |
| TATTTCTAATTGAATAATCT+TGG | 0.297973 | 1_1:-43672425 | Msa0023050:three_prime_UTR |
| TTCAAAGAATCCCCAACTTT+AGG | 0.311054 | 1_1:+43674211 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1_1:+43674594 | None:intergenic |
| TCCCCAACTTTAGGTGTTGA+TGG | 0.373312 | 1_1:+43674220 | None:intergenic |
| ATCCATCAACACCTAAAGTT+GGG | 0.374981 | 1_1:-43674222 | Msa0023050:CDS |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1_1:-43674709 | Msa0023050:CDS |
| TTCTATTCTAGCAAAAGAAA+AGG | 0.410124 | 1_1:-43680808 | None:intergenic |
| GGCTAAGTCTGGAATAATCT+TGG | 0.411526 | 1_1:-43672475 | Msa0023050:three_prime_UTR |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_1:-43672779 | Msa0023050:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1_1:-43678608 | Msa0023050:CDS |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1_1:+43674595 | None:intergenic |
| TCTGCAACTTCAGGTGTTGA+TGG | 0.429179 | 1_1:+43680136 | None:intergenic |
| ATTTCTAATTGAATAATCTT+GGG | 0.429529 | 1_1:-43672424 | Msa0023050:three_prime_UTR |
| TAGCAAAAGAAAAGGGTTGA+TGG | 0.440538 | 1_1:-43680800 | Msa0023050:exon |
| TTCTATGGGATGGCTAAGTC+TGG | 0.448568 | 1_1:-43672486 | Msa0023050:three_prime_UTR |
| TATCCATCAACACCTAAAGT+TGG | 0.451195 | 1_1:-43674223 | Msa0023050:CDS |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1_1:-43672763 | Msa0023050:CDS |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1_1:-43678592 | Msa0023050:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1_1:-43674588 | Msa0023050:intron |
| CAAACGGATCCTTAAAGAAA+AGG | 0.472694 | 1_1:+43672381 | None:intergenic |
| TCTATTCTAGCAAAAGAAAA+GGG | 0.477974 | 1_1:-43680807 | None:intergenic |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1_1:-43674604 | Msa0023050:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1_1:-43674170 | Msa0023050:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1_1:-43680086 | Msa0023050:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1_1:-43672815 | Msa0023050:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1_1:-43678644 | Msa0023050:CDS |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1_1:-43674737 | Msa0023050:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1_1:-43672750 | Msa0023050:intron |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1_1:-43678579 | Msa0023050:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_1:+43672562 | None:intergenic |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1_1:-43680767 | Msa0023050:CDS |
| TTTGGTGGCAGAGCATTCCT+TGG | 0.514690 | 1_1:-43672622 | Msa0023050:intron |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1_1:+43674588 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1_1:-43674787 | Msa0023050:intron |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1_1:+43674712 | None:intergenic |
| ATCTGAAAATGAGGAGGGGA+TGG | 0.523730 | 1_1:-43674661 | Msa0023050:CDS |
| AAAGGGTTGATGGAGGAAGT+AGG | 0.531180 | 1_1:-43680790 | Msa0023050:exon |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1_1:-43672769 | Msa0023050:CDS |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1_1:-43678598 | Msa0023050:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1_1:+43672605 | None:intergenic |
| TCCATCAACACCTAAAGTTG+GGG | 0.550336 | 1_1:-43674221 | Msa0023050:CDS |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1_1:-43674670 | Msa0023050:CDS |
| ATGGCTACTGATACTATGGA+TGG | 0.557940 | 1_1:-43674690 | Msa0023050:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_1:-43672778 | Msa0023050:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1_1:-43678607 | Msa0023050:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1_1:-43680768 | Msa0023050:CDS |
| CAGTAGCCATAACGTTGAAG+AGG | 0.571035 | 1_1:+43674703 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1_1:-43674594 | Msa0023050:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1_1:-43674603 | Msa0023050:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1_1:-43674171 | Msa0023050:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1_1:-43680087 | Msa0023050:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1_1:+43674610 | None:intergenic |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_1:-43674778 | Msa0023050:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1_1:+43674579 | None:intergenic |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1_1:-43680766 | Msa0023050:CDS |
| ACAACATCTGAAAATGAGGA+GGG | 0.619877 | 1_1:-43674666 | Msa0023050:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.624375 | 1_1:-43674667 | Msa0023050:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1_1:+43674713 | None:intergenic |
| GGGTTGATGGAGGAAGTAGG+TGG | 0.640246 | 1_1:-43680787 | Msa0023050:exon |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_1:-43674781 | Msa0023050:CDS |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1_1:-43674736 | Msa0023050:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_1:-43674759 | Msa0023050:CDS |
| CAACATCTGAAAATGAGGAG+GGG | 0.662503 | 1_1:-43674665 | Msa0023050:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1_1:+43674156 | None:intergenic |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1_1:+43680072 | None:intergenic |
| CAAAAGAAAAGGGTTGATGG+AGG | 0.674676 | 1_1:-43680797 | Msa0023050:exon |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_1:-43672557 | Msa0023050:CDS |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1_1:-43680763 | Msa0023050:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATATTAAATAAATTT+AGG | + | chr1_1:43680188-43680207 | None:intergenic | 0.0% |
| !!! | TCATGATTTTTTTTTTTTTA+GGG | - | chr1_1:43673681-43673700 | Msa0023050:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTTG+AGG | - | chr1_1:43674111-43674130 | Msa0023050:intron | 10.0% |
| !! | TTTAATATAAAATATACAGT+TGG | + | chr1_1:43674172-43674191 | None:intergenic | 10.0% |
| !!! | ATCACTATAAAAAATATTTT+AGG | + | chr1_1:43675725-43675744 | None:intergenic | 10.0% |
| !!! | TTTAAATTTGTTTCTTAAAA+AGG | + | chr1_1:43675903-43675922 | None:intergenic | 10.0% |
| !!! | GGAAAAAATAATTTTTTTAT+GGG | + | chr1_1:43676274-43676293 | None:intergenic | 10.0% |
| !! | TCTATATATAAAAAAAAACT+TGG | - | chr1_1:43676649-43676668 | Msa0023050:intron | 10.0% |
| !!! | AATTTTATCATAGTTATTAA+AGG | + | chr1_1:43677605-43677624 | None:intergenic | 10.0% |
| !! | TTTGTTTAAAAAAAAATTTC+GGG | + | chr1_1:43677666-43677685 | None:intergenic | 10.0% |
| !! | AAATAATGACATTAATTAAT+AGG | + | chr1_1:43679389-43679408 | None:intergenic | 10.0% |
| !!! | ATTACACTTTTTTTTTTTTA+TGG | - | chr1_1:43679657-43679676 | Msa0023050:intron | 10.0% |
| !!! | GATTTTTTTTTTTTTTTTTG+AGG | - | chr1_1:43679981-43680000 | Msa0023050:intron | 10.0% |
| !!! | ATAAATTATGGTTTAAAATT+TGG | - | chr1_1:43680262-43680281 | Msa0023050:intron | 10.0% |
| !!! | TCTAGTTTTTAATAGATAAA+AGG | + | chr1_1:43672725-43672744 | None:intergenic | 15.0% |
| !!! | TTGTATTTATTTTAGTATAG+AGG | + | chr1_1:43673436-43673455 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1_1:43673463-43673482 | None:intergenic | 15.0% |
| !! | AAATAATGACATTAATGAAT+AGG | + | chr1_1:43673480-43673499 | None:intergenic | 15.0% |
| !!! | CTCATGATTTTTTTTTTTTT+AGG | - | chr1_1:43673680-43673699 | Msa0023050:intron | 15.0% |
| !!! | AGTAACTATTTTTTTTTGAT+TGG | - | chr1_1:43673868-43673887 | Msa0023050:intron | 15.0% |
| !!! | AACTAAAATATTTTCTTTGA+CGG | - | chr1_1:43674023-43674042 | Msa0023050:intron | 15.0% |
| !!! | TAAATTATGGCTTTTAAATT+TGG | - | chr1_1:43674431-43674450 | Msa0023050:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1_1:43674722-43674741 | Msa0023050:CDS | 15.0% |
| !!! | TATTTCTAATTGAATAATCT+TGG | - | chr1_1:43674937-43674956 | Msa0023050:intron | 15.0% |
| !! | ATTTCTAATTGAATAATCTT+GGG | - | chr1_1:43674938-43674957 | Msa0023050:intron | 15.0% |
| !!! | TTAATAAATGCATTTGATTT+TGG | + | chr1_1:43675139-43675158 | None:intergenic | 15.0% |
| !!! | TTTCTATCTAGAATAAATTT+AGG | + | chr1_1:43676011-43676030 | None:intergenic | 15.0% |
| !! | TTTATTCTAGATAGAAAAAT+TGG | - | chr1_1:43676014-43676033 | Msa0023050:intron | 15.0% |
| !! | AGTTAATGATATTTAACAAA+AGG | - | chr1_1:43676056-43676075 | Msa0023050:intron | 15.0% |
| !!! | GGGAAAAAATAATTTTTTTA+TGG | + | chr1_1:43676275-43676294 | None:intergenic | 15.0% |
| !! | TTAAAACTACTTATAACAAA+GGG | - | chr1_1:43676518-43676537 | Msa0023050:intron | 15.0% |
| !!! | GTGTTATTATACAATAATAT+TGG | + | chr1_1:43676721-43676740 | None:intergenic | 15.0% |
| !!! | CTCTATTTGTTTAAAATAAA+CGG | - | chr1_1:43677363-43677382 | Msa0023050:intron | 15.0% |
| !! | AATACAAAAAAGTAAATAGT+AGG | - | chr1_1:43677399-43677418 | Msa0023050:intron | 15.0% |
| !! | TTAAAGGAATTAGTATTTAA+AGG | + | chr1_1:43677589-43677608 | None:intergenic | 15.0% |
| !!! | GAAATAATTGATAAGTTTTA+TGG | + | chr1_1:43677813-43677832 | None:intergenic | 15.0% |
| !!! | TTTTTTTAAAACAGATGTTT+AGG | - | chr1_1:43677880-43677899 | Msa0023050:intron | 15.0% |
| !! | AATTAGACATGTAAAAAAAA+AGG | + | chr1_1:43678672-43678691 | None:intergenic | 15.0% |
| !!! | AAAGGAATATTTTTTTTTGA+AGG | + | chr1_1:43679315-43679334 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTTATAGTATAC+AGG | + | chr1_1:43679344-43679363 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1_1:43673463-43673482 | None:intergenic | 15.0% |
| !! | TAATAGGATAAATTAAATGA+AGG | + | chr1_1:43679373-43679392 | None:intergenic | 15.0% |
| !!! | AAAAAAAAAAGTGTAATTCA+TGG | + | chr1_1:43679654-43679673 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTATGGACTTA+TGG | - | chr1_1:43679665-43679684 | Msa0023050:intron | 15.0% |
| !!! | TTGGTAACTATTTTTTTTAT+TGG | - | chr1_1:43679758-43679777 | Msa0023050:intron | 15.0% |
| !! | AACTAAAATAATTTCTTTGA+CGG | - | chr1_1:43679893-43679912 | Msa0023050:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1_1:43674722-43674741 | Msa0023050:CDS | 15.0% |
| !!! | TATTTCTAATTGAATAATCT+TGG | - | chr1_1:43674937-43674956 | Msa0023050:intron | 15.0% |
| !! | ATTTCTAATTGAATAATCTT+GGG | - | chr1_1:43674938-43674957 | Msa0023050:intron | 15.0% |
| !! | TCTATTAAAAACTAGAACAA+TGG | - | chr1_1:43672729-43672748 | Msa0023050:intron | 20.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1_1:43672828-43672847 | Msa0023050:CDS | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1_1:43672858-43672877 | Msa0023050:intron | 20.0% |
| !! | TTTCATGATATACAGAAAAT+AGG | - | chr1_1:43673346-43673365 | Msa0023050:intron | 20.0% |
| !! | TTCATGATATACAGAAAATA+GGG | - | chr1_1:43673347-43673366 | Msa0023050:intron | 20.0% |
| !! | GAATAGGATAAATTAAATGA+AGG | + | chr1_1:43673464-43673483 | None:intergenic | 20.0% |
| !! | ATTCATGATACAAAAATGAA+AGG | + | chr1_1:43673750-43673769 | None:intergenic | 20.0% |
| !!! | TGAATCACACTTTTTTTTTA+TGG | - | chr1_1:43673765-43673784 | Msa0023050:intron | 20.0% |
| !!! | ACTTTTTTTTTATGGACTTA+TGG | - | chr1_1:43673773-43673792 | Msa0023050:intron | 20.0% |
| !!! | CACTAGATTTTTTTTTTTGA+AGG | + | chr1_1:43674380-43674399 | None:intergenic | 20.0% |
| !!! | GTGATGATGTTTTAAAAATT+CGG | - | chr1_1:43674397-43674416 | Msa0023050:intron | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1_1:43674693-43674712 | Msa0023050:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1_1:43674725-43674744 | Msa0023050:CDS | 20.0% |
| !!! | ATGTTTAAGCATATTTTCTA+TGG | - | chr1_1:43674861-43674880 | Msa0023050:intron | 20.0% |
| !!! | TGTTTAAGCATATTTTCTAT+GGG | - | chr1_1:43674862-43674881 | Msa0023050:intron | 20.0% |
| !!! | TTTTAAACTCCTTTTCTTTA+AGG | - | chr1_1:43674972-43674991 | Msa0023050:intron | 20.0% |
| !!! | TGTAAGTTGAATTTTTTCAA+TGG | + | chr1_1:43675251-43675270 | None:intergenic | 20.0% |
| !!! | ATTTGTTTGTGTTTTATACT+TGG | + | chr1_1:43675394-43675413 | None:intergenic | 20.0% |
| !! | GATTTGTCAATAAAAAAACT+AGG | - | chr1_1:43675834-43675853 | Msa0023050:intron | 20.0% |
| !! | AACAAAAGGTAAATAAAAAG+AGG | - | chr1_1:43676070-43676089 | Msa0023050:intron | 20.0% |
| !! | ACAAAAGGTAAATAAAAAGA+GGG | - | chr1_1:43676071-43676090 | Msa0023050:intron | 20.0% |
| !! | AAAAAATAATTTATCACTCG+TGG | - | chr1_1:43676456-43676475 | Msa0023050:intron | 20.0% |
| !! | AAAAATAATTTATCACTCGT+GGG | - | chr1_1:43676457-43676476 | Msa0023050:intron | 20.0% |
| !!! | CTTTGTTATAAGTAGTTTTA+AGG | + | chr1_1:43676519-43676538 | None:intergenic | 20.0% |
| !! | CTTAAAACTACTTATAACAA+AGG | - | chr1_1:43676517-43676536 | Msa0023050:intron | 20.0% |
| !!! | AATAACACATGTGATTTTTT+AGG | - | chr1_1:43676733-43676752 | Msa0023050:intron | 20.0% |
| !!! | ATAACACATGTGATTTTTTA+GGG | - | chr1_1:43676734-43676753 | Msa0023050:intron | 20.0% |
| !!! | TTATTTTAACATCAGCAATT+AGG | + | chr1_1:43676844-43676863 | None:intergenic | 20.0% |
| !!! | TTTATTTGACAATTTTCTTC+TGG | - | chr1_1:43677128-43677147 | Msa0023050:intron | 20.0% |
| !!! | CATCAATTAATTTTTCATGA+AGG | - | chr1_1:43677265-43677284 | Msa0023050:intron | 20.0% |
| !!! | AATTAATTTTTCATGAAGGA+GGG | - | chr1_1:43677269-43677288 | Msa0023050:intron | 20.0% |
| !! | GAAATAGAGATAATACTAAA+TGG | - | chr1_1:43677483-43677502 | Msa0023050:intron | 20.0% |
| !!! | GAATTAGTCTTTTTACAAAA+GGG | + | chr1_1:43677537-43677556 | None:intergenic | 20.0% |
| !!! | TGAATTAGTCTTTTTACAAA+AGG | + | chr1_1:43677538-43677557 | None:intergenic | 20.0% |
| !! | ATTAGTATTTAAAGGATTGA+TGG | + | chr1_1:43677581-43677600 | None:intergenic | 20.0% |
| !! | GAATCATTAACAATTTCTTT+AGG | - | chr1_1:43677840-43677859 | Msa0023050:intron | 20.0% |
| !!! | AACTTTTTCTTTCTAAATTG+TGG | - | chr1_1:43678194-43678213 | Msa0023050:intron | 20.0% |
| !!! | ATGTTATTTGAACAATCATT+TGG | + | chr1_1:43678239-43678258 | None:intergenic | 20.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1_1:43672828-43672847 | Msa0023050:CDS | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1_1:43672858-43672877 | Msa0023050:intron | 20.0% |
| !! | TTTCATGATAAACAGAAAAT+AGG | - | chr1_1:43679254-43679273 | Msa0023050:intron | 20.0% |
| !! | TTCATGATAAACAGAAAATA+GGG | - | chr1_1:43679255-43679274 | Msa0023050:intron | 20.0% |
| !!! | GAATATTTTTTTTTGAAGGA+AGG | + | chr1_1:43679311-43679330 | None:intergenic | 20.0% |
| !!! | ATCTCATGATTTTCTTTTTT+TGG | - | chr1_1:43679569-43679588 | Msa0023050:intron | 20.0% |
| !!! | TCTCATGATTTTCTTTTTTT+GGG | - | chr1_1:43679570-43679589 | Msa0023050:intron | 20.0% |
| !! | GTAATATTGCATATATTAGA+CGG | - | chr1_1:43680139-43680158 | Msa0023050:CDS | 20.0% |
| !!! | GTGATGATGTTTTAAAAATT+CGG | - | chr1_1:43674397-43674416 | Msa0023050:intron | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1_1:43674693-43674712 | Msa0023050:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1_1:43674725-43674744 | Msa0023050:CDS | 20.0% |
| !!! | ATGTTTAAGCATATTTTCTA+TGG | - | chr1_1:43674861-43674880 | Msa0023050:intron | 20.0% |
| !!! | TGTTTAAGCATATTTTCTAT+GGG | - | chr1_1:43674862-43674881 | Msa0023050:intron | 20.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1_1:43672805-43672824 | None:intergenic | 25.0% |
| ! | ATTTCCCATTCATTTGTATT+GGG | + | chr1_1:43673294-43673313 | None:intergenic | 25.0% |
| ! | AATTTCCCATTCATTTGTAT+TGG | + | chr1_1:43673295-43673314 | None:intergenic | 25.0% |
| ! | TCATGATATACAGAAAATAG+GGG | - | chr1_1:43673348-43673367 | Msa0023050:intron | 25.0% |
| !!! | AAAGGAAGATGATTACTTTT+TGG | + | chr1_1:43673375-43673394 | None:intergenic | 25.0% |
| ! | TGTTTCGAATTTCAATTATC+TGG | + | chr1_1:43673529-43673548 | None:intergenic | 25.0% |
| ! | CAGGATATTAGTAAAATCAA+TGG | - | chr1_1:43673565-43673584 | Msa0023050:intron | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1_1:43673643-43673662 | None:intergenic | 25.0% |
| !! | TATAGGTTGAGCAATTATAT+AGG | - | chr1_1:43673930-43673949 | Msa0023050:intron | 25.0% |
| !!! | ACTATGATCAATGCTTTTTA+TGG | + | chr1_1:43674835-43674854 | None:intergenic | 25.0% |
| !! | TTGGATTCAATTTTCAGAAA+GGG | + | chr1_1:43675120-43675139 | None:intergenic | 25.0% |
| !! | TTTGGATTCAATTTTCAGAA+AGG | + | chr1_1:43675121-43675140 | None:intergenic | 25.0% |
| ! | AAAAAAGAATACAAGCATAG+TGG | - | chr1_1:43675202-43675221 | Msa0023050:intron | 25.0% |
| ! | AAAAAGAATACAAGCATAGT+GGG | - | chr1_1:43675203-43675222 | Msa0023050:intron | 25.0% |
| ! | TTTCAATGGTTGAGATTAAT+AGG | + | chr1_1:43675237-43675256 | None:intergenic | 25.0% |
| ! | AAAATTCAACTTACATCCAA+TGG | - | chr1_1:43675256-43675275 | Msa0023050:intron | 25.0% |
| ! | TAATAATTCAAATCTTGCAC+CGG | - | chr1_1:43675307-43675326 | Msa0023050:intron | 25.0% |
| ! | ATAGTGATACCTCTTAAAAA+AGG | - | chr1_1:43675737-43675756 | Msa0023050:intron | 25.0% |
| !!! | TAGCATTTTCCTTTTTTAAG+AGG | + | chr1_1:43675749-43675768 | None:intergenic | 25.0% |
| !!! | ATAAGTTTTGTTTGAGTTCA+AGG | - | chr1_1:43675796-43675815 | Msa0023050:intron | 25.0% |
| ! | TGTCAATAAAAAAACTAGGT+TGG | - | chr1_1:43675838-43675857 | Msa0023050:intron | 25.0% |
| ! | GTCAATAAAAAAACTAGGTT+GGG | - | chr1_1:43675839-43675858 | Msa0023050:intron | 25.0% |
| ! | TAAAGCTTAAAACCTTATGT+TGG | - | chr1_1:43675919-43675938 | Msa0023050:intron | 25.0% |
| ! | AACATAAGCTTAATATGGAA+CGG | + | chr1_1:43676296-43676315 | None:intergenic | 25.0% |
| ! | AAGCAAACATAAGCTTAATA+TGG | + | chr1_1:43676301-43676320 | None:intergenic | 25.0% |
| ! | TTGATTCTAACTTGATCTTA+TGG | - | chr1_1:43676395-43676414 | Msa0023050:intron | 25.0% |
| ! | CCTCTTAAAAATAACATTCA+TGG | + | chr1_1:43676557-43676576 | None:intergenic | 25.0% |
| !!! | CCATGAATGTTATTTTTAAG+AGG | - | chr1_1:43676554-43676573 | Msa0023050:intron | 25.0% |
| !! | TTGATTTTGTCATCGAAAAA+AGG | - | chr1_1:43676578-43676597 | Msa0023050:intron | 25.0% |
| !!! | TAACACATGTGATTTTTTAG+GGG | - | chr1_1:43676735-43676754 | Msa0023050:intron | 25.0% |
| ! | CTGTGTGAATATAAATATAG+AGG | - | chr1_1:43676776-43676795 | Msa0023050:intron | 25.0% |
| ! | TGAATATAAATATAGAGGCA+TGG | - | chr1_1:43676781-43676800 | Msa0023050:intron | 25.0% |
| !!! | TGTCTTTAGGATTAATTCAA+AGG | + | chr1_1:43677072-43677091 | None:intergenic | 25.0% |
| ! | TTGAATTAATCCTAAAGACA+AGG | - | chr1_1:43677072-43677091 | Msa0023050:intron | 25.0% |
| !! | CAATTAATTTTTCATGAAGG+AGG | - | chr1_1:43677268-43677287 | Msa0023050:intron | 25.0% |
| !!! | AAAAGGGTATGCAATTTTAT+TGG | + | chr1_1:43677521-43677540 | None:intergenic | 25.0% |
| ! | TTAAACAAATGTTTACGACA+AGG | - | chr1_1:43677677-43677696 | Msa0023050:intron | 25.0% |
| ! | TAAACTTCTTAAAGTGCAAA+TGG | + | chr1_1:43677726-43677745 | None:intergenic | 25.0% |
| ! | AAATTGACTGTAATAAAGAG+CGG | - | chr1_1:43678022-43678041 | Msa0023050:intron | 25.0% |
| !! | GTTTACGATAGATATTTTGT+AGG | - | chr1_1:43678295-43678314 | Msa0023050:intron | 25.0% |
| !! | GTTAACTGTCACTTATATAA+GGG | + | chr1_1:43679139-43679158 | None:intergenic | 25.0% |
| !! | AGTTAACTGTCACTTATATA+AGG | + | chr1_1:43679140-43679159 | None:intergenic | 25.0% |
| ! | TCATGATAAACAGAAAATAG+GGG | - | chr1_1:43679256-43679275 | Msa0023050:intron | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1_1:43673643-43673662 | None:intergenic | 25.0% |
| ! | TCTATTCTAAATCATGAGAT+TGG | + | chr1_1:43679598-43679617 | None:intergenic | 25.0% |
| ! | ATTCATGGTTCAAAAATGAA+AGG | + | chr1_1:43679639-43679658 | None:intergenic | 25.0% |
| ! | TGCTTAAAAATCAAATCTGT+TGG | - | chr1_1:43673847-43673866 | Msa0023050:intron | 25.0% |
| ! | TTTCATATGCATACTTTCAT+TGG | + | chr1_1:43680318-43680337 | None:intergenic | 25.0% |
| !!! | ACTATGATCAATGCTTTTTA+TGG | + | chr1_1:43674835-43674854 | None:intergenic | 25.0% |
| AGAAAAGAGAATGAAGATGA+AGG | - | chr1_1:43672457-43672476 | Msa0023050:three_prime_UTR | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1_1:43672629-43672648 | None:intergenic | 30.0% | |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1_1:43672832-43672851 | Msa0023050:CDS | 30.0% | |
| TTAACTTACACAGATGTATC+GGG | + | chr1_1:43672938-43672957 | None:intergenic | 30.0% | |
| CTTAACTTACACAGATGTAT+CGG | + | chr1_1:43672939-43672958 | None:intergenic | 30.0% | |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1_1:43673015-43673034 | None:intergenic | 30.0% |
| ATGGATAAAAAGCTGTTGAA+AGG | + | chr1_1:43673039-43673058 | None:intergenic | 30.0% | |
| TTGTTCATTCCTTTATCTGA+TGG | - | chr1_1:43673228-43673247 | Msa0023050:intron | 30.0% | |
| TGTTCATTCCTTTATCTGAT+GGG | - | chr1_1:43673229-43673248 | Msa0023050:intron | 30.0% | |
| ATTAACTACCCATCAGATAA+AGG | + | chr1_1:43673240-43673259 | None:intergenic | 30.0% | |
| TAACTCCCAATACAAATGAA+TGG | - | chr1_1:43673286-43673305 | Msa0023050:intron | 30.0% | |
| AACTCCCAATACAAATGAAT+GGG | - | chr1_1:43673287-43673306 | Msa0023050:intron | 30.0% | |
| CATGATATACAGAAAATAGG+GGG | - | chr1_1:43673349-43673368 | Msa0023050:intron | 30.0% | |
| ! | GAAAGGAAGATTTTCTTTTG+AGG | + | chr1_1:43673408-43673427 | None:intergenic | 30.0% |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1_1:43673425-43673444 | None:intergenic | 30.0% | |
| TCTATTCCAAATCATGAGAT+TGG | + | chr1_1:43673709-43673728 | None:intergenic | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1_1:43673913-43673932 | Msa0023050:intron | 30.0% | |
| ! | ACGGAAGTGTATAAAATCTA+TGG | - | chr1_1:43674042-43674061 | Msa0023050:intron | 30.0% |
| ! | CGGAAGTGTATAAAATCTAT+GGG | - | chr1_1:43674043-43674062 | Msa0023050:intron | 30.0% |
| GGTAGATGCTACATAAATTA+TGG | - | chr1_1:43674418-43674437 | Msa0023050:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1_1:43674481-43674500 | None:intergenic | 30.0% | |
| TCATTGATGCATACTTTCAT+TGG | + | chr1_1:43674487-43674506 | None:intergenic | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_1:43674584-43674603 | Msa0023050:intron | 30.0% |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1_1:43674700-43674719 | Msa0023050:CDS | 30.0% | |
| ! | TAAGCATATTTTCTATGGGA+TGG | - | chr1_1:43674866-43674885 | Msa0023050:intron | 30.0% |
| !! | TTGAAGTGTTTGAAGTGTTT+TGG | - | chr1_1:43675050-43675069 | Msa0023050:intron | 30.0% |
| GCAAAAGTAATGTTATCCAT+TGG | + | chr1_1:43675275-43675294 | None:intergenic | 30.0% | |
| TCTATAGTACAAAAGATACC+AGG | - | chr1_1:43675533-43675552 | Msa0023050:intron | 30.0% | |
| CTTGATACGAGGAAAAAAAA+TGG | - | chr1_1:43675657-43675676 | Msa0023050:intron | 30.0% | |
| AGGAAAAAAAATGGACATCT+TGG | - | chr1_1:43675666-43675685 | Msa0023050:intron | 30.0% | |
| GGAAAAAAAATGGACATCTT+GGG | - | chr1_1:43675667-43675686 | Msa0023050:intron | 30.0% | |
| !!! | AGGCATTTTGATTTTAGGTT+TGG | - | chr1_1:43675693-43675712 | Msa0023050:intron | 30.0% |
| GTGTTCATCTTAACTATTTG+TGG | - | chr1_1:43675877-43675896 | Msa0023050:intron | 30.0% | |
| GTTGCATTCAATTATTGGAA+CGG | + | chr1_1:43675962-43675981 | None:intergenic | 30.0% | |
| TTGACGTTGCATTCAATTAT+TGG | + | chr1_1:43675967-43675986 | None:intergenic | 30.0% | |
| CTTCTAAACTTGTGTCTTAA+GGG | + | chr1_1:43676112-43676131 | None:intergenic | 30.0% | |
| ACTTCTAAACTTGTGTCTTA+AGG | + | chr1_1:43676113-43676132 | None:intergenic | 30.0% | |
| ACATAAGCTTAATATGGAAC+GGG | + | chr1_1:43676295-43676314 | None:intergenic | 30.0% | |
| ! | GTAGTTAGAATTGATTCTAG+AGG | - | chr1_1:43676332-43676351 | Msa0023050:intron | 30.0% |
| TTGTGCACTCAAATGATTTA+TGG | - | chr1_1:43676682-43676701 | Msa0023050:intron | 30.0% | |
| AATGATTTATGGAGGTTCAA+TGG | - | chr1_1:43676693-43676712 | Msa0023050:intron | 30.0% | |
| AAATAACACAACAGATGAGA+CGG | - | chr1_1:43676858-43676877 | Msa0023050:intron | 30.0% | |
| ! | AAAATGGTCAATGTTTTCCT+GGG | + | chr1_1:43676926-43676945 | None:intergenic | 30.0% |
| ! | AGGAAAACATTGACCATTTT+GGG | - | chr1_1:43676926-43676945 | Msa0023050:intron | 30.0% |
| ATCTTCTTTCACAAGAAACT+TGG | + | chr1_1:43676977-43676996 | None:intergenic | 30.0% | |
| TAATGATGTGAAGAATGAGT+GGG | + | chr1_1:43677029-43677048 | None:intergenic | 30.0% | |
| TTAATGATGTGAAGAATGAG+TGG | + | chr1_1:43677030-43677049 | None:intergenic | 30.0% | |
| AAGAAATAGACCTTGTCTTT+AGG | + | chr1_1:43677085-43677104 | None:intergenic | 30.0% | |
| TTGCTGGGAATAATCTTAAA+CGG | - | chr1_1:43677103-43677122 | Msa0023050:intron | 30.0% | |
| TGACTAATAATAGTAAGACC+AGG | + | chr1_1:43677173-43677192 | None:intergenic | 30.0% | |
| ! | AAGTCTTGCATCTTTAAGAA+CGG | - | chr1_1:43677192-43677211 | Msa0023050:intron | 30.0% |
| TGTAAAAAGACTAATTCACC+CGG | - | chr1_1:43677540-43677559 | Msa0023050:intron | 30.0% | |
| TCTTAAAGTGCAAATGGTTT+CGG | + | chr1_1:43677720-43677739 | None:intergenic | 30.0% | |
| ! | TAAAACAGATGTTTAGGACA+AGG | - | chr1_1:43677886-43677905 | Msa0023050:intron | 30.0% |
| AACAACTTTCAGAAAAGAGA+AGG | - | chr1_1:43678391-43678410 | Msa0023050:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1_1:43672629-43672648 | None:intergenic | 30.0% | |
| TGATGTAACTTTGTAAGGTT+TGG | - | chr1_1:43672833-43672852 | Msa0023050:CDS | 30.0% | |
| GAGAATGAGCAAAAATAGAT+GGG | - | chr1_1:43678892-43678911 | Msa0023050:intron | 30.0% | |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1_1:43673015-43673034 | None:intergenic | 30.0% |
| TTCCCATTCCTTTATATCAA+CGG | + | chr1_1:43679200-43679219 | None:intergenic | 30.0% | |
| CATGATAAACAGAAAATAGG+GGG | - | chr1_1:43679257-43679276 | Msa0023050:intron | 30.0% | |
| ATAGTATACAGGAAAGTGAA+AGG | + | chr1_1:43679333-43679352 | None:intergenic | 30.0% | |
| CAAACATTATTCTCTCTCAA+CGG | - | chr1_1:43679456-43679475 | Msa0023050:intron | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1_1:43673913-43673932 | Msa0023050:intron | 30.0% | |
| ! | ACGGAAGTGTATTAAATCTA+TGG | - | chr1_1:43679912-43679931 | Msa0023050:intron | 30.0% |
| ! | CGGAAGTGTATTAAATCTAT+GGG | - | chr1_1:43679913-43679932 | Msa0023050:intron | 30.0% |
| GGTAGAAGCTACATAAATTA+TGG | - | chr1_1:43680250-43680269 | Msa0023050:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1_1:43674481-43674500 | None:intergenic | 30.0% | |
| AAGTATGCATATGAAAATGC+AGG | - | chr1_1:43680322-43680341 | Msa0023050:intron | 30.0% | |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1_1:43674584-43674603 | Msa0023050:intron | 30.0% |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1_1:43674700-43674719 | Msa0023050:CDS | 30.0% | |
| ! | TAAGCATATTTTCTATGGGA+TGG | - | chr1_1:43674866-43674885 | Msa0023050:intron | 30.0% |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1_1:43672508-43672527 | Msa0023050:three_prime_UTR | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1_1:43672534-43672553 | None:intergenic | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1_1:43672535-43672554 | None:intergenic | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1_1:43672535-43672554 | Msa0023050:exon | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1_1:43672574-43672593 | Msa0023050:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1_1:43672577-43672596 | Msa0023050:CDS | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1_1:43672578-43672597 | Msa0023050:CDS | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1_1:43672640-43672659 | Msa0023050:intron | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1_1:43672641-43672660 | Msa0023050:intron | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1_1:43672668-43672687 | None:intergenic | 35.0% | |
| AGGAAGTTAGCAAAGAAAGT+TGG | + | chr1_1:43672705-43672724 | None:intergenic | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1_1:43672871-43672890 | None:intergenic | 35.0% | |
| CGGAAATGAGCAAAATCATA+TGG | + | chr1_1:43672899-43672918 | None:intergenic | 35.0% | |
| ACGGGAATGAGAAAAATAGA+TGG | - | chr1_1:43672977-43672996 | Msa0023050:intron | 35.0% | |
| CGGGAATGAGAAAAATAGAT+GGG | - | chr1_1:43672978-43672997 | Msa0023050:intron | 35.0% | |
| TTCAAAGAATCTGCAACTTC+AGG | + | chr1_1:43673067-43673086 | None:intergenic | 35.0% | |
| !! | TTTTGAGGAAGGAAAGTGAA+AGG | + | chr1_1:43673393-43673412 | None:intergenic | 35.0% |
| !! | GGAAGATTTTCTTTTGAGGA+AGG | + | chr1_1:43673404-43673423 | None:intergenic | 35.0% |
| CATAGTATATATGCACGACT+AGG | + | chr1_1:43673803-43673822 | None:intergenic | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1_1:43673807-43673826 | Msa0023050:intron | 35.0% | |
| ATTCAGATACTCTTTAGCCA+AGG | + | chr1_1:43673827-43673846 | None:intergenic | 35.0% | |
| GAAATGAGTTTCGCTTTACA+AGG | + | chr1_1:43673972-43673991 | None:intergenic | 35.0% | |
| GTATGCATCAATGAAAATGC+AGG | - | chr1_1:43674493-43674512 | Msa0023050:intron | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1_1:43674521-43674540 | Msa0023050:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1_1:43674547-43674566 | Msa0023050:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_1:43674583-43674602 | Msa0023050:intron | 35.0% |
| !!! | TTTACCTTTTGAGTTTGCCA+AGG | + | chr1_1:43674619-43674638 | None:intergenic | 35.0% |
| AATAGTCACTTACACTTCCA+AGG | + | chr1_1:43674760-43674779 | None:intergenic | 35.0% | |
| GGATAAGTCTGGAAAAATCT+TGG | - | chr1_1:43674887-43674906 | Msa0023050:intron | 35.0% | |
| CAAACGGATCCTTAAAGAAA+AGG | + | chr1_1:43674984-43675003 | None:intergenic | 35.0% | |
| !! | CTTTTCTTTAAGGATCCGTT+TGG | - | chr1_1:43674982-43675001 | Msa0023050:intron | 35.0% |
| !! | AAGTGTTTGAAGTGTTTTGG+AGG | - | chr1_1:43675053-43675072 | Msa0023050:intron | 35.0% |
| !! | AGTGTTTGAAGTGTTTTGGA+GGG | - | chr1_1:43675054-43675073 | Msa0023050:intron | 35.0% |
| AGCCAGCAACTAAAGAAAAA+AGG | - | chr1_1:43675634-43675653 | Msa0023050:intron | 35.0% | |
| !!! | AGCCTTTTTTCTTTAGTTGC+TGG | + | chr1_1:43675639-43675658 | None:intergenic | 35.0% |
| AAGAAAAAAGGCTTGATACG+AGG | - | chr1_1:43675646-43675665 | Msa0023050:intron | 35.0% | |
| !!! | GGACAAGGCATTTTGATTTT+AGG | - | chr1_1:43675688-43675707 | Msa0023050:intron | 35.0% |
| TGAGTTCAAGGTTTGAACTT+AGG | - | chr1_1:43675808-43675827 | Msa0023050:intron | 35.0% | |
| AGATTGTGCATTCAATGTCT+TGG | - | chr1_1:43676156-43676175 | Msa0023050:intron | 35.0% | |
| AATTCTAACTACTCCAAACG+TGG | + | chr1_1:43676324-43676343 | None:intergenic | 35.0% | |
| !!! | TTTTTTGCGTTTGAGAGAGA+AGG | - | chr1_1:43676419-43676438 | Msa0023050:intron | 35.0% |
| TAATTTATCACTCGTGGGAT+TGG | - | chr1_1:43676462-43676481 | Msa0023050:intron | 35.0% | |
| TGCACTCAAATGATTTATGG+AGG | - | chr1_1:43676685-43676704 | Msa0023050:intron | 35.0% | |
| ! | CAAAATGGTCAATGTTTTCC+TGG | + | chr1_1:43676927-43676946 | None:intergenic | 35.0% |
| ! | CAGGAAAACATTGACCATTT+TGG | - | chr1_1:43676925-43676944 | Msa0023050:intron | 35.0% |
| ! | AAAACATTGACCATTTTGGG+AGG | - | chr1_1:43676929-43676948 | Msa0023050:intron | 35.0% |
| AATGATGTGAAGAATGAGTG+GGG | + | chr1_1:43677028-43677047 | None:intergenic | 35.0% | |
| !! | TTTTTCGAATTTGCATGTCC+TGG | - | chr1_1:43677152-43677171 | Msa0023050:intron | 35.0% |
| GAGGGTTTAGCATATGAAAT+TGG | - | chr1_1:43677328-43677347 | Msa0023050:intron | 35.0% | |
| ! | GGTATGCAATTTTATTGGCA+AGG | + | chr1_1:43677516-43677535 | None:intergenic | 35.0% |
| ATGGCATGAATGTTATAAGC+CGG | + | chr1_1:43677562-43677581 | None:intergenic | 35.0% | |
| !! | TCTTTAGGACAATCGTTAGA+AGG | - | chr1_1:43677855-43677874 | Msa0023050:intron | 35.0% |
| GTAGTCATGACTCATAAGAT+AGG | - | chr1_1:43678047-43678066 | Msa0023050:intron | 35.0% | |
| AAAGTTGTCACAAAGGTTGT+CGG | + | chr1_1:43678110-43678129 | None:intergenic | 35.0% | |
| ! | ATTTTATCTCTCCAGTGCTT+TGG | - | chr1_1:43678155-43678174 | Msa0023050:intron | 35.0% |
| AGTTGCAGTTAAAGTCTTTG+TGG | + | chr1_1:43678351-43678370 | None:intergenic | 35.0% | |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_1:43678404-43678423 | Msa0023050:intron | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1_1:43672508-43672527 | Msa0023050:three_prime_UTR | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1_1:43672534-43672553 | None:intergenic | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1_1:43672535-43672554 | None:intergenic | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1_1:43672535-43672554 | Msa0023050:exon | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1_1:43672574-43672593 | Msa0023050:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1_1:43672577-43672596 | Msa0023050:CDS | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1_1:43672578-43672597 | Msa0023050:CDS | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1_1:43672640-43672659 | Msa0023050:intron | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1_1:43672641-43672660 | Msa0023050:intron | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1_1:43672668-43672687 | None:intergenic | 35.0% | |
| AGGAAGTAAGCAAAGAAAGT+TGG | + | chr1_1:43678652-43678671 | None:intergenic | 35.0% | |
| GAGCAATTCACCAAGAAAAA+TGG | + | chr1_1:43678750-43678769 | None:intergenic | 35.0% | |
| CAGATGAAAGAAGAGCAATT+TGG | + | chr1_1:43678778-43678797 | None:intergenic | 35.0% | |
| AACGTACACAAGTGTATTCT+CGG | + | chr1_1:43678849-43678868 | None:intergenic | 35.0% | |
| CGAGAATGAGCAAAAATAGA+TGG | - | chr1_1:43678891-43678910 | Msa0023050:intron | 35.0% | |
| ATGGATAAACAGCTGTTGAA+AGG | + | chr1_1:43678955-43678974 | None:intergenic | 35.0% | |
| TATCCATCAACACCTAAAGT+TGG | - | chr1_1:43678968-43678987 | Msa0023050:intron | 35.0% | |
| ATCCATCAACACCTAAAGTT+GGG | - | chr1_1:43678969-43678988 | Msa0023050:intron | 35.0% | |
| TTCAAAGAATCCCCAACTTT+AGG | + | chr1_1:43678983-43679002 | None:intergenic | 35.0% | |
| AGTTACTGCCGTTGATATAA+AGG | - | chr1_1:43679189-43679208 | Msa0023050:intron | 35.0% | |
| TGCCGTTGATATAAAGGAAT+GGG | - | chr1_1:43679195-43679214 | Msa0023050:intron | 35.0% | |
| TTTGAAGGAAGGAAAGTGAA+AGG | + | chr1_1:43679300-43679319 | None:intergenic | 35.0% | |
| CATAGTATATATGCACGACT+AGG | + | chr1_1:43673803-43673822 | None:intergenic | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1_1:43673807-43673826 | Msa0023050:intron | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1_1:43674521-43674540 | Msa0023050:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1_1:43674547-43674566 | Msa0023050:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1_1:43674583-43674602 | Msa0023050:intron | 35.0% |
| !!! | TTTACCTTTTGAGTTTGCCA+AGG | + | chr1_1:43674619-43674638 | None:intergenic | 35.0% |
| AATAGTCACTTACACTTCCA+AGG | + | chr1_1:43674760-43674779 | None:intergenic | 35.0% | |
| !! | CAAAAGAAAAGGGTTGATGG+AGG | - | chr1_1:43672394-43672413 | Msa0023050:three_prime_UTR | 40.0% |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_1:43672424-43672443 | Msa0023050:three_prime_UTR | 40.0% |
| GAGAATGAAGATGAAGGTGA+TGG | - | chr1_1:43672463-43672482 | Msa0023050:three_prime_UTR | 40.0% | |
| ! | AATGAAGATGAAGGTGATGG+TGG | - | chr1_1:43672466-43672485 | Msa0023050:three_prime_UTR | 40.0% |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1_1:43672507-43672526 | Msa0023050:three_prime_UTR | 40.0% | |
| CGTTATGGCTACTGATACTA+TGG | - | chr1_1:43672550-43672569 | Msa0023050:CDS | 40.0% | |
| ATGGCTACTGATACTATGGA+TGG | - | chr1_1:43672554-43672573 | Msa0023050:CDS | 40.0% | |
| ATCTGAAAATGAGGAGGGAA+TGG | - | chr1_1:43672583-43672602 | Msa0023050:CDS | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1_1:43672637-43672656 | None:intergenic | 40.0% | |
| TGTGTAAGTTAAGTCACGCT+CGG | - | chr1_1:43672946-43672965 | Msa0023050:intron | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1_1:43673095-43673114 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1_1:43673096-43673115 | None:intergenic | 40.0% |
| ACAGACATTATTCTCTCGTC+AGG | - | chr1_1:43673546-43673565 | Msa0023050:intron | 40.0% | |
| AGGGAACCAATCTCATGATT+TGG | - | chr1_1:43673700-43673719 | Msa0023050:intron | 40.0% | |
| AGCGAAACTCATTTCCTTGA+CGG | - | chr1_1:43673977-43673996 | Msa0023050:intron | 40.0% | |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1_1:43673994-43674013 | None:intergenic | 40.0% |
| TTCTATGGGATGGATAAGTC+TGG | - | chr1_1:43674876-43674895 | Msa0023050:intron | 40.0% | |
| TCCAAAACACTCGAACCAAA+CGG | + | chr1_1:43675000-43675019 | None:intergenic | 40.0% | |
| !!! | GTGTTTGAAGTGTTTTGGAG+GGG | - | chr1_1:43675055-43675074 | Msa0023050:intron | 40.0% |
| AAATTATAGCCCCACGACAA+AGG | + | chr1_1:43675363-43675382 | None:intergenic | 40.0% | |
| !!! | GTTGGTTTTGGGATTGGTTT+AGG | + | chr1_1:43675447-43675466 | None:intergenic | 40.0% |
| ACCATGTGAAGAAGACCATA+AGG | - | chr1_1:43675474-43675493 | Msa0023050:intron | 40.0% | |
| TCCTTATGGTCTTCTTCACA+TGG | + | chr1_1:43675478-43675497 | None:intergenic | 40.0% | |
| AATTGCAGAGAGCTCAACAT+TGG | - | chr1_1:43675497-43675516 | Msa0023050:intron | 40.0% | |
| AGCCAGCAACTAAAGAAACA+AGG | - | chr1_1:43675557-43675576 | Msa0023050:intron | 40.0% | |
| !! | AGCCTTGTTTCTTTAGTTGC+TGG | + | chr1_1:43675562-43675581 | None:intergenic | 40.0% |
| !! | TTCTTTAGTTGCTGGCTTCT+TGG | + | chr1_1:43675631-43675650 | None:intergenic | 40.0% |
| AAAATGGACATCTTGGGACA+AGG | - | chr1_1:43675673-43675692 | Msa0023050:intron | 40.0% | |
| GAGTCAATCAGTCCAACATA+AGG | + | chr1_1:43675934-43675953 | None:intergenic | 40.0% | |
| ! | ATGTTGGACTGATTGACTCT+TGG | - | chr1_1:43675935-43675954 | Msa0023050:intron | 40.0% |
| !! | AATCCTTAACTTGTGCCCTT+AGG | - | chr1_1:43676232-43676251 | Msa0023050:intron | 40.0% |
| !! | ATCCTTAACTTGTGCCCTTA+GGG | - | chr1_1:43676233-43676252 | Msa0023050:intron | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr1_1:43676250-43676269 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr1_1:43676251-43676270 | None:intergenic | 40.0% |
| CTTATGTTTGCTTCCACGTT+TGG | - | chr1_1:43676308-43676327 | Msa0023050:intron | 40.0% | |
| ! | GAGACCAAGGCTTTTATTGT+GGG | - | chr1_1:43676484-43676503 | Msa0023050:intron | 40.0% |
| CTATCCCACAATAAAAGCCT+TGG | + | chr1_1:43676491-43676510 | None:intergenic | 40.0% | |
| ! | CAAGGCTTTTATTGTGGGAT+AGG | - | chr1_1:43676489-43676508 | Msa0023050:intron | 40.0% |
| !! | ATTGACCATTTTGGGAGGTT+GGG | - | chr1_1:43676934-43676953 | Msa0023050:intron | 40.0% |
| TTAAACCCAACCTCCCAAAA+TGG | + | chr1_1:43676942-43676961 | None:intergenic | 40.0% | |
| ! | AGACAAGGTCTATTTCTTGC+TGG | - | chr1_1:43677087-43677106 | Msa0023050:intron | 40.0% |
| ! | GACAAGGTCTATTTCTTGCT+GGG | - | chr1_1:43677088-43677107 | Msa0023050:intron | 40.0% |
| !!! | TGAAGGAGGGTTTTGTTAGT+CGG | - | chr1_1:43677282-43677301 | Msa0023050:intron | 40.0% |
| ATCCTATCCAATTCAACACG+AGG | - | chr1_1:43677309-43677328 | Msa0023050:intron | 40.0% | |
| TCCTATCCAATTCAACACGA+GGG | - | chr1_1:43677310-43677329 | Msa0023050:intron | 40.0% | |
| TGGCATGAATGTTATAAGCC+GGG | + | chr1_1:43677561-43677580 | None:intergenic | 40.0% | |
| GAGAGAGAAAGTTGTCACAA+AGG | + | chr1_1:43678117-43678136 | None:intergenic | 40.0% | |
| AAATATCCAATCACTGCACG+TGG | - | chr1_1:43678324-43678343 | Msa0023050:intron | 40.0% | |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_1:43678410-43678429 | Msa0023050:intron | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1_1:43672507-43672526 | Msa0023050:three_prime_UTR | 40.0% | |
| CGTTATGGCTACTGATACTA+TGG | - | chr1_1:43672550-43672569 | Msa0023050:CDS | 40.0% | |
| ATGGCTACTGATACTATGGA+TGG | - | chr1_1:43672554-43672573 | Msa0023050:CDS | 40.0% | |
| CAACATCTGAAAATGAGGAG+GGG | - | chr1_1:43672579-43672598 | Msa0023050:CDS | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1_1:43672637-43672656 | None:intergenic | 40.0% | |
| TTCTCGGTATGAGTTAACTC+AGG | + | chr1_1:43678833-43678852 | None:intergenic | 40.0% | |
| TGTGTACGTTAATTCACGCT+CGG | - | chr1_1:43678859-43678878 | Msa0023050:intron | 40.0% | |
| TCCATCAACACCTAAAGTTG+GGG | - | chr1_1:43678970-43678989 | Msa0023050:intron | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1_1:43673095-43673114 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1_1:43673096-43673115 | None:intergenic | 40.0% |
| CTGCCGTTGATATAAAGGAA+TGG | - | chr1_1:43679194-43679213 | Msa0023050:intron | 40.0% | |
| ATTCAGATGCTCTTTAGCCA+AGG | + | chr1_1:43679719-43679738 | None:intergenic | 40.0% | |
| GAAATGAGTCTCGCTTTACA+AGG | + | chr1_1:43679845-43679864 | None:intergenic | 40.0% | |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1_1:43673994-43674013 | None:intergenic | 40.0% |
| ! | GGCTAAGTCTGGAATAATCT+TGG | - | chr1_1:43680716-43680735 | Msa0023050:intron | 40.0% |
| !! | AAAGGGTTGATGGAGGAAGT+AGG | - | chr1_1:43672401-43672420 | Msa0023050:three_prime_UTR | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_1:43672423-43672442 | Msa0023050:three_prime_UTR | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_1:43672425-43672444 | Msa0023050:three_prime_UTR | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_1:43672485-43672504 | Msa0023050:three_prime_UTR | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1_1:43672544-43672563 | None:intergenic | 45.0% | |
| !! | TCTGCAACTTCAGGTGTTGA+TGG | + | chr1_1:43673058-43673077 | None:intergenic | 45.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1_1:43673104-43673123 | Msa0023050:intron | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1_1:43674593-43674612 | Msa0023050:CDS | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_1:43674803-43674822 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_1:43674821-43674840 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_1:43674824-43674843 | None:intergenic | 45.0% |
| !! | TCCGTTTGGTTCGAGTGTTT+TGG | - | chr1_1:43674996-43675015 | Msa0023050:intron | 45.0% |
| !! | GTTTGGTTCGAGTGTTTTGG+AGG | - | chr1_1:43674999-43675018 | Msa0023050:intron | 45.0% |
| !!! | TTCGAGTGTTTTGGAGGAGA+GGG | - | chr1_1:43675005-43675024 | Msa0023050:intron | 45.0% |
| !!! | TTTGAAGTGTTTTGGAGGGG+AGG | - | chr1_1:43675058-43675077 | Msa0023050:intron | 45.0% |
| !!! | TTGAAGTGTTTTGGAGGGGA+GGG | - | chr1_1:43675059-43675078 | Msa0023050:intron | 45.0% |
| ! | AATTCAAATCTTGCACCGGC+AGG | - | chr1_1:43675311-43675330 | Msa0023050:intron | 45.0% |
| !!! | TGGGAAGTTGGTTTTGGGAT+TGG | + | chr1_1:43675453-43675472 | None:intergenic | 45.0% |
| !!! | TGGTCTGGGAAGTTGGTTTT+GGG | + | chr1_1:43675458-43675477 | None:intergenic | 45.0% |
| !! | ATGGTCTGGGAAGTTGGTTT+TGG | + | chr1_1:43675459-43675478 | None:intergenic | 45.0% |
| TGGTCTTCTTCACATGGTCT+GGG | + | chr1_1:43675472-43675491 | None:intergenic | 45.0% | |
| ATGGTCTTCTTCACATGGTC+TGG | + | chr1_1:43675473-43675492 | None:intergenic | 45.0% | |
| GAGCTCTCTGCAATTCCTTA+TGG | + | chr1_1:43675492-43675511 | None:intergenic | 45.0% | |
| AGAGAGCTCAACATTGGTGT+TGG | - | chr1_1:43675503-43675522 | Msa0023050:intron | 45.0% | |
| !! | TTCTTTAGTTGCTGGCTTCC+TGG | + | chr1_1:43675554-43675573 | None:intergenic | 45.0% |
| ACAAGGCTTGAGCTCAACAT+TGG | - | chr1_1:43675574-43675593 | Msa0023050:intron | 45.0% | |
| CTTGAGCTCAACATTGGTGT+TGG | - | chr1_1:43675580-43675599 | Msa0023050:intron | 45.0% | |
| ! | GGAGACCAAGGCTTTTATTG+TGG | - | chr1_1:43676483-43676502 | Msa0023050:intron | 45.0% |
| !! | AGACGGTGAACATTGATTCG+TGG | - | chr1_1:43676875-43676894 | Msa0023050:intron | 45.0% |
| !! | CATTGACCATTTTGGGAGGT+TGG | - | chr1_1:43676933-43676952 | Msa0023050:intron | 45.0% |
| TGGGGTCGAAGTCTTTGTAA+AGG | + | chr1_1:43677010-43677029 | None:intergenic | 45.0% | |
| ACCCTCGTGTTGAATTGGAT+AGG | + | chr1_1:43677314-43677333 | None:intergenic | 45.0% | |
| GCTAAACCCTCGTGTTGAAT+TGG | + | chr1_1:43677319-43677338 | None:intergenic | 45.0% | |
| TTGCACGAAAACCAAAGCAC+TGG | + | chr1_1:43678169-43678188 | None:intergenic | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_1:43678413-43678432 | Msa0023050:intron | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_1:43672485-43672504 | Msa0023050:three_prime_UTR | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1_1:43672544-43672563 | None:intergenic | 45.0% | |
| ATCTGAAAATGAGGAGGGGA+TGG | - | chr1_1:43678530-43678549 | Msa0023050:intron | 45.0% | |
| !! | TCCCCAACTTTAGGTGTTGA+TGG | + | chr1_1:43678974-43678993 | None:intergenic | 45.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1_1:43673104-43673123 | Msa0023050:intron | 45.0% | |
| GCAAATGTGCAAGGATAAGC+AGG | - | chr1_1:43679048-43679067 | Msa0023050:intron | 45.0% | |
| !! | TGTCGCTCGACATTTTTCAG+TGG | + | chr1_1:43679170-43679189 | None:intergenic | 45.0% |
| AGCGAGACTCATTTCCTTGA+CGG | - | chr1_1:43679850-43679869 | Msa0023050:intron | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1_1:43674593-43674612 | Msa0023050:CDS | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_1:43674803-43674822 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_1:43674821-43674840 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_1:43674824-43674843 | None:intergenic | 45.0% |
| TTCTATGGGATGGCTAAGTC+TGG | - | chr1_1:43680705-43680724 | Msa0023050:intron | 45.0% | |
| !!! | TAGTTTTTTTTTTTTTTTTA+CGG | + | chr1_1:43674008-43674027 | None:intergenic | 5.0% |
| !! | CATAAATATTAAATAAATTT+AGG | + | chr1_1:43674322-43674341 | None:intergenic | 5.0% |
| !! | ATTTGTTTAAAAAAAAATTT+CGG | + | chr1_1:43677667-43677686 | None:intergenic | 5.0% |
| !!! | TTTTAGTTTTTTTTTTTTTA+CGG | + | chr1_1:43679881-43679900 | None:intergenic | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1_1:43680042-43680061 | None:intergenic | 5.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_1:43672428-43672447 | Msa0023050:three_prime_UTR | 50.0% |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1_1:43672652-43672671 | None:intergenic | 50.0% | |
| CTTACACAGATGTATCGGGC+AGG | + | chr1_1:43672934-43672953 | None:intergenic | 50.0% | |
| !! | GTCACGCTCGGCTATTTTGA+CGG | - | chr1_1:43672958-43672977 | Msa0023050:intron | 50.0% |
| !!! | TCACGCTCGGCTATTTTGAC+GGG | - | chr1_1:43672959-43672978 | Msa0023050:intron | 50.0% |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1_1:43673105-43673124 | Msa0023050:intron | 50.0% | |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1_1:43673123-43673142 | Msa0023050:intron | 50.0% | |
| GCAAATGTGCAAGGACAAGC+AGG | - | chr1_1:43673132-43673151 | Msa0023050:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1_1:43674612-43674631 | Msa0023050:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1_1:43674740-43674759 | Msa0023050:CDS | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_1:43674805-43674824 | Msa0023050:intron | 50.0% | |
| !!! | GTTCGAGTGTTTTGGAGGAG+AGG | - | chr1_1:43675004-43675023 | Msa0023050:intron | 50.0% |
| !!! | TCGAGTGTTTTGGAGGAGAG+GGG | - | chr1_1:43675006-43675025 | Msa0023050:intron | 50.0% |
| !!! | TGAAGTGTTTTGGAGGGGAG+GGG | - | chr1_1:43675060-43675079 | Msa0023050:intron | 50.0% |
| CTACGGTGCATGACCTTCAT+GGG | + | chr1_1:43675340-43675359 | None:intergenic | 50.0% | |
| CTTCACATGGTCTGGGAAGT+TGG | + | chr1_1:43675465-43675484 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACAAGTTA+AGG | + | chr1_1:43676238-43676257 | None:intergenic | 50.0% |
| TGACTCTAATCGTAGCACCC+AGG | - | chr1_1:43676906-43676925 | Msa0023050:intron | 50.0% | |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1_1:43672652-43672671 | None:intergenic | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1_1:43673105-43673124 | Msa0023050:intron | 50.0% | |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1_1:43673123-43673142 | Msa0023050:intron | 50.0% | |
| TGTGCAAGGATAAGCAGGTG+CGG | - | chr1_1:43679053-43679072 | Msa0023050:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1_1:43674612-43674631 | Msa0023050:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1_1:43674740-43674759 | Msa0023050:CDS | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_1:43674805-43674824 | Msa0023050:intron | 50.0% | |
| !! | GGGTTGATGGAGGAAGTAGG+TGG | - | chr1_1:43672404-43672423 | Msa0023050:three_prime_UTR | 55.0% |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1_1:43672653-43672672 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1_1:43672650-43672669 | Msa0023050:intron | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1_1:43672659-43672678 | None:intergenic | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1_1:43672656-43672675 | Msa0023050:intron | 55.0% | |
| CGGGCAGGTGTATTTCTCAG+CGG | + | chr1_1:43672919-43672938 | None:intergenic | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1_1:43673122-43673141 | None:intergenic | 55.0% | |
| TGTGCAAGGACAAGCAGGTG+CGG | - | chr1_1:43673137-43673156 | Msa0023050:intron | 55.0% | |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1_1:43674599-43674618 | Msa0023050:CDS | 55.0% | |
| !!! | AGTGTTTTGGAGGAGAGGGG+AGG | - | chr1_1:43675009-43675028 | Msa0023050:intron | 55.0% |
| !!! | GTGTTTTGGAGGAGAGGGGA+GGG | - | chr1_1:43675010-43675029 | Msa0023050:intron | 55.0% |
| !!! | TGTTTTGGAGGAGAGGGGAG+GGG | - | chr1_1:43675011-43675030 | Msa0023050:intron | 55.0% |
| GCTACGGTGCATGACCTTCA+TGG | + | chr1_1:43675341-43675360 | None:intergenic | 55.0% | |
| ATGCACCGTAGCCTTTGTCG+TGG | - | chr1_1:43675349-43675368 | Msa0023050:intron | 55.0% | |
| TGCACCGTAGCCTTTGTCGT+GGG | - | chr1_1:43675350-43675369 | Msa0023050:intron | 55.0% | |
| TAGCCCCACGACAAAGGCTA+CGG | + | chr1_1:43675357-43675376 | None:intergenic | 55.0% | |
| GGTTGGGATGACATGACACG+AGG | - | chr1_1:43675855-43675874 | Msa0023050:intron | 55.0% | |
| ACTCGTGGGATTGGAGACCA+AGG | - | chr1_1:43676471-43676490 | Msa0023050:intron | 55.0% | |
| TGTGGACCACGTGCAGTGAT+TGG | + | chr1_1:43678333-43678352 | None:intergenic | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1_1:43672653-43672672 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1_1:43672650-43672669 | Msa0023050:intron | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1_1:43672659-43672678 | None:intergenic | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1_1:43672656-43672675 | Msa0023050:intron | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1_1:43673122-43673141 | None:intergenic | 55.0% | |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1_1:43674599-43674618 | Msa0023050:CDS | 55.0% | |
| GACCTTCATGGGTCTCCTGC+CGG | + | chr1_1:43675329-43675348 | None:intergenic | 60.0% | |
| GCACCGTAGCCTTTGTCGTG+GGG | - | chr1_1:43675351-43675370 | Msa0023050:intron | 60.0% | |
| TTTGGAGGAGAGGGGAGGGG+AGG | - | chr1_1:43675014-43675033 | Msa0023050:intron | 65.0% | |
| CACCGGCAGGAGACCCATGA+AGG | - | chr1_1:43675324-43675343 | Msa0023050:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 43672394 | 43680819 | 43672394 | ID=Msa0023050;Name=Msa0023050 |
| chr1_1 | mRNA | 43672394 | 43680819 | 43672394 | ID=Msa0023050-mRNA-1;Parent=Msa0023050;Name=Msa0023050-mRNA-1;_AED=0.31;_eAED=0.31;_QI=16|0.33|0.14|1|0.33|0.28|7|143|246 |
| chr1_1 | exon | 43672394 | 43672633 | 43672394 | ID=Msa0023050-mRNA-1:exon:12643;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43672751 | 43672855 | 43672751 | ID=Msa0023050-mRNA-1:exon:12642;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43674160 | 43674250 | 43674160 | ID=Msa0023050-mRNA-1:exon:12641;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43674589 | 43674800 | 43674589 | ID=Msa0023050-mRNA-1:exon:12640;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43678580 | 43678684 | 43678580 | ID=Msa0023050-mRNA-1:exon:12639;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43680076 | 43680166 | 43680076 | ID=Msa0023050-mRNA-1:exon:12638;Parent=Msa0023050-mRNA-1 |
| chr1_1 | exon | 43680764 | 43680819 | 43680764 | ID=Msa0023050-mRNA-1:exon:12637;Parent=Msa0023050-mRNA-1 |
| chr1_1 | five_prime_UTR | 43680804 | 43680819 | 43680804 | ID=Msa0023050-mRNA-1:five_prime_utr;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43680764 | 43680803 | 43680764 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43680076 | 43680166 | 43680076 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43678580 | 43678684 | 43678580 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43674589 | 43674800 | 43674589 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43674160 | 43674250 | 43674160 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43672751 | 43672855 | 43672751 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | CDS | 43672537 | 43672633 | 43672537 | ID=Msa0023050-mRNA-1:cds;Parent=Msa0023050-mRNA-1 |
| chr1_1 | three_prime_UTR | 43672394 | 43672536 | 43672394 | ID=Msa0023050-mRNA-1:three_prime_utr;Parent=Msa0023050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
