Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023040 | sp|Q8LGG8|USPAL_ARATH | 26.786 | 168 | 98 | 4 | 24 | 178 | 7 | 162 | 7.67e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0023040 | 0.877321 | 6.901848e-69 | -8.615850e-47 |
| Msa0023010 | Msa0023040 | 0.894951 | 1.520728e-75 | -8.615850e-47 |
| Msa0023040 | Msa0023050 | 0.890933 | 6.294070e-74 | -8.615850e-47 |
| Msa0023040 | Msa0026680 | 0.818049 | 2.400544e-52 | -8.615850e-47 |
| Msa0023040 | Msa0070860 | 0.817697 | 2.883305e-52 | -8.615850e-47 |
| Msa0023040 | Msa0118790 | 0.853078 | 3.031189e-61 | -8.615850e-47 |
| Msa0023040 | Msa0118810 | 0.838702 | 2.457326e-57 | -8.615850e-47 |
| Msa0023040 | Msa0140630 | 0.840426 | 8.760058e-58 | -8.615850e-47 |
| Msa0023040 | Msa0145080 | 0.815559 | 8.689827e-52 | -8.615850e-47 |
| Msa0023040 | Msa0156370 | 0.861422 | 1.037353e-63 | -8.615850e-47 |
| Msa0023040 | Msa0162120 | 0.856662 | 2.765456e-62 | -8.615850e-47 |
| Msa0023040 | Msa0162130 | 0.824659 | 7.161385e-54 | -8.615850e-47 |
| Msa0023040 | Msa0339040 | 0.816923 | 4.305812e-52 | -8.615850e-47 |
| Msa0023040 | Msa0355140 | 0.826615 | 2.461679e-54 | -8.615850e-47 |
| Msa0023040 | Msa0381500 | 0.834625 | 2.689248e-56 | -8.615850e-47 |
| Msa0023040 | Msa0402210 | 0.832335 | 1.002240e-55 | -8.615850e-47 |
| Msa0023040 | Msa0469560 | -0.836849 | 7.352440e-57 | -8.615850e-47 |
| Msa0023040 | Msa0483770 | 0.829964 | 3.833539e-55 | -8.615850e-47 |
| Msa0023040 | Msa0515270 | -0.804414 | 2.185296e-49 | -8.615850e-47 |
| Msa0023040 | Msa0519950 | 0.834585 | 2.752918e-56 | -8.615850e-47 |
| Msa0023040 | Msa0550120 | 0.873297 | 1.640450e-67 | -8.615850e-47 |
| Msa0023040 | Msa0550150 | 0.840246 | 9.758685e-58 | -8.615850e-47 |
| Msa0023040 | Msa0604010 | 0.802731 | 4.880482e-49 | -8.615850e-47 |
| Msa0023040 | Msa0605630 | 0.878253 | 3.261481e-69 | -8.615850e-47 |
| Msa0023040 | Msa0605640 | 0.821677 | 3.555675e-53 | -8.615850e-47 |
| Msa0023040 | Msa0605650 | 0.852289 | 5.089818e-61 | -8.615850e-47 |
| Msa0023040 | Msa0646580 | 0.887322 | 1.580479e-72 | -8.615850e-47 |
| Msa0023040 | Msa0686210 | 0.840651 | 7.649878e-58 | -8.615850e-47 |
| Msa0023040 | Msa0686220 | 0.814789 | 1.288307e-51 | -8.615850e-47 |
| Msa0023040 | Msa0708930 | 0.803016 | 4.263361e-49 | -8.615850e-47 |
| Msa0023040 | Msa0738380 | 0.807771 | 4.294801e-50 | -8.615850e-47 |
| Msa0023040 | Msa0817730 | 0.810021 | 1.417516e-50 | -8.615850e-47 |
| Msa0023040 | Msa0818750 | 0.831562 | 1.555777e-55 | -8.615850e-47 |
| Msa0023040 | Msa0844220 | -0.819640 | 1.044293e-52 | -8.615850e-47 |
| Msa0023040 | Msa0858180 | 0.807142 | 5.841368e-50 | -8.615850e-47 |
| Msa0023040 | Msa0861860 | 0.801784 | 7.648498e-49 | -8.615850e-47 |
| Msa0023040 | Msa0867730 | 0.851693 | 7.517751e-61 | -8.615850e-47 |
| Msa0023040 | Msa0968610 | 0.839315 | 1.705027e-57 | -8.615850e-47 |
| Msa0023040 | Msa1212190 | 0.835836 | 1.330809e-56 | -8.615850e-47 |
| Msa0023040 | Msa1212270 | 0.840898 | 6.587867e-58 | -8.615850e-47 |
| Msa0023040 | Msa1259910 | 0.838807 | 2.308722e-57 | -8.615850e-47 |
| Msa0023040 | Msa1353750 | 0.805639 | 1.211290e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023040 | MtrunA17_Chr1g0176321 | 88.701 | 177 | 10 | 1 | 21 | 187 | 1 | 177 | 2.88e-115 | 325 |
| Msa0023040 | MtrunA17_Chr1g0176311 | 77.041 | 196 | 30 | 5 | 1 | 187 | 1 | 190 | 4.11e-104 | 297 |
| Msa0023040 | MtrunA17_Chr1g0195661 | 38.983 | 177 | 92 | 4 | 13 | 184 | 2 | 167 | 1.84e-33 | 117 |
| Msa0023040 | MtrunA17_Chr1g0192651 | 39.884 | 173 | 83 | 5 | 13 | 181 | 3 | 158 | 2.51e-32 | 114 |
| Msa0023040 | MtrunA17_Chr1g0194801 | 37.356 | 174 | 82 | 5 | 17 | 180 | 2 | 158 | 8.97e-31 | 110 |
| Msa0023040 | MtrunA17_Chr5g0427291 | 36.527 | 167 | 87 | 6 | 25 | 178 | 10 | 170 | 3.82e-28 | 103 |
| Msa0023040 | MtrunA17_Chr7g0269301 | 37.349 | 166 | 91 | 4 | 22 | 184 | 7 | 162 | 5.79e-25 | 95.1 |
| Msa0023040 | MtrunA17_Chr2g0323291 | 29.944 | 177 | 93 | 6 | 24 | 184 | 26 | 187 | 9.45e-19 | 80.5 |
| Msa0023040 | MtrunA17_Chr5g0433951 | 34.091 | 176 | 87 | 5 | 25 | 187 | 7 | 166 | 1.75e-18 | 78.6 |
| Msa0023040 | MtrunA17_Chr2g0294421 | 31.928 | 166 | 100 | 3 | 24 | 184 | 6 | 163 | 2.18e-18 | 78.2 |
| Msa0023040 | MtrunA17_Chr4g0001641 | 47.541 | 61 | 32 | 0 | 118 | 178 | 5 | 65 | 1.13e-17 | 73.6 |
| Msa0023040 | MtrunA17_Chr4g0032261 | 30.723 | 166 | 90 | 2 | 24 | 178 | 6 | 157 | 1.46e-17 | 75.9 |
| Msa0023040 | MtrunA17_Chr6g0450171 | 34.409 | 93 | 59 | 1 | 88 | 178 | 70 | 162 | 7.75e-15 | 68.9 |
| Msa0023040 | MtrunA17_Chr7g0240701 | 27.108 | 166 | 96 | 2 | 24 | 178 | 6 | 157 | 9.63e-14 | 65.9 |
| Msa0023040 | MtrunA17_Chr4g0008801 | 29.448 | 163 | 90 | 4 | 27 | 178 | 9 | 157 | 3.98e-13 | 64.3 |
| Msa0023040 | MtrunA17_Chr3g0144691 | 27.922 | 154 | 81 | 4 | 25 | 177 | 43 | 167 | 9.68e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0023040 | AT3G11930.1 | 54.444 | 180 | 68 | 3 | 15 | 185 | 25 | 199 | 2.70e-65 | 199 |
| Msa0023040 | AT3G11930.2 | 54.144 | 181 | 68 | 3 | 15 | 185 | 25 | 200 | 3.63e-65 | 199 |
| Msa0023040 | AT3G11930.4 | 53.846 | 182 | 68 | 3 | 15 | 185 | 25 | 201 | 4.27e-65 | 199 |
| Msa0023040 | AT3G11930.3 | 47.343 | 207 | 68 | 4 | 15 | 185 | 25 | 226 | 4.74e-59 | 184 |
| Msa0023040 | AT3G58450.2 | 51.852 | 162 | 66 | 3 | 25 | 182 | 32 | 185 | 4.14e-52 | 166 |
| Msa0023040 | AT3G58450.1 | 49.091 | 165 | 73 | 2 | 25 | 182 | 32 | 192 | 1.05e-50 | 162 |
| Msa0023040 | AT1G09740.2 | 36.686 | 169 | 86 | 4 | 25 | 182 | 10 | 168 | 1.53e-30 | 110 |
| Msa0023040 | AT1G09740.1 | 36.686 | 169 | 86 | 4 | 25 | 182 | 10 | 168 | 1.53e-30 | 110 |
| Msa0023040 | AT3G62550.1 | 36.585 | 164 | 80 | 4 | 24 | 178 | 8 | 156 | 2.84e-28 | 103 |
| Msa0023040 | AT2G47710.1 | 34.568 | 162 | 95 | 3 | 22 | 181 | 7 | 159 | 3.64e-27 | 101 |
| Msa0023040 | AT1G68300.1 | 35.119 | 168 | 93 | 3 | 15 | 178 | 2 | 157 | 1.27e-26 | 99.8 |
| Msa0023040 | AT3G01520.1 | 26.786 | 168 | 98 | 4 | 24 | 178 | 7 | 162 | 7.79e-17 | 74.7 |
| Msa0023040 | AT3G17020.1 | 32.716 | 162 | 93 | 4 | 24 | 178 | 8 | 160 | 1.29e-16 | 73.9 |
| Msa0023040 | AT5G14680.1 | 27.811 | 169 | 95 | 5 | 24 | 178 | 7 | 162 | 1.49e-16 | 73.9 |
| Msa0023040 | AT3G03270.2 | 31.737 | 167 | 85 | 5 | 25 | 178 | 7 | 157 | 3.57e-15 | 69.7 |
| Msa0023040 | AT1G11360.2 | 26.705 | 176 | 99 | 5 | 22 | 182 | 37 | 197 | 2.78e-14 | 68.9 |
| Msa0023040 | AT1G11360.1 | 26.705 | 176 | 99 | 5 | 22 | 182 | 37 | 197 | 2.78e-14 | 68.9 |
| Msa0023040 | AT1G11360.4 | 26.705 | 176 | 99 | 5 | 22 | 182 | 37 | 197 | 2.78e-14 | 68.9 |
| Msa0023040 | AT1G11360.3 | 26.705 | 176 | 99 | 5 | 22 | 182 | 37 | 197 | 2.78e-14 | 68.9 |
| Msa0023040 | AT3G53990.1 | 28.571 | 168 | 91 | 5 | 27 | 181 | 9 | 160 | 6.97e-14 | 66.6 |
Find 51 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTATGGCTACTGTTACTA+TGG | 0.141861 | 1_1:-43665230 | Msa0023040:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1_1:-43663532 | Msa0023040:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1_1:+43665154 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1_1:+43665130 | None:intergenic |
| AAAAGGGTGATGGAGGAAAT+AGG | 0.378001 | 1_1:-43665382 | None:intergenic |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1_1:+43665131 | None:intergenic |
| GTCATGGGTAATCGTGGCCT+TGG | 0.462824 | 1_1:-43663454 | Msa0023040:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1_1:-43665124 | Msa0023040:intron |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1_1:-43665140 | Msa0023040:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1_1:-43664721 | Msa0023040:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1_1:-43663506 | Msa0023040:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.498311 | 1_1:-43663441 | Msa0023040:intron |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1_1:-43665273 | Msa0023040:CDS |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1_1:+43663255 | None:intergenic |
| ATCTGAAAATGAGGAGGGAA+TGG | 0.505451 | 1_1:-43665197 | Msa0023040:CDS |
| CACGATTACCCATGACTAAG+AGG | 0.510479 | 1_1:+43663461 | None:intergenic |
| ATGGCTACTGTTACTATGGA+TGG | 0.511147 | 1_1:-43665226 | Msa0023040:CDS |
| TGGAAGTGTTGATCAAGTGA+GGG | 0.512230 | 1_1:-43665359 | Msa0023040:CDS |
| TTTGGTGGCAGAGCATTCCT+TGG | 0.514690 | 1_1:-43663315 | Msa0023040:intron |
| GCAAGTTGACCTCTTAGTCA+TGG | 0.518942 | 1_1:-43663470 | Msa0023040:CDS |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1_1:+43665124 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1_1:-43665323 | Msa0023040:CDS |
| TAGCGTTGAAGAGGTTATCA+AGG | 0.523668 | 1_1:+43665248 | None:intergenic |
| GCAAATGTGCAAGGACAAGC+AGG | 0.531005 | 1_1:-43664694 | Msa0023040:intron |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1_1:+43663298 | None:intergenic |
| CAGTAGCCATAGCGTTGAAG+AGG | 0.554998 | 1_1:+43665239 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1_1:-43665206 | Msa0023040:CDS |
| GTGGAAGTGTTGATCAAGTG+AGG | 0.562018 | 1_1:-43665360 | Msa0023040:CDS |
| TGATAACCTCTTCAACGCTA+TGG | 0.563001 | 1_1:-43665245 | Msa0023040:CDS |
| CAAGTTGACCTCTTAGTCAT+GGG | 0.564221 | 1_1:-43663469 | Msa0023040:CDS |
| CTCTTAGTCATGGGTAATCG+TGG | 0.565567 | 1_1:-43663460 | Msa0023040:CDS |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1_1:-43665130 | Msa0023040:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1_1:-43665336 | Msa0023040:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1_1:-43665139 | Msa0023040:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1_1:-43664722 | Msa0023040:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1_1:+43665146 | None:intergenic |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.602324 | 1_1:-43664703 | Msa0023040:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1_1:-43665314 | Msa0023040:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.606982 | 1_1:-43665203 | Msa0023040:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1_1:+43665115 | None:intergenic |
| GGAAGTGTTGATCAAGTGAG+GGG | 0.617330 | 1_1:-43665358 | Msa0023040:CDS |
| ACAACATCTGAAAATGAGGA+GGG | 0.642374 | 1_1:-43665202 | Msa0023040:CDS |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1_1:-43665317 | Msa0023040:CDS |
| AGCGTTGAAGAGGTTATCAA+GGG | 0.645807 | 1_1:+43665249 | None:intergenic |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1_1:-43665272 | Msa0023040:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1_1:-43665295 | Msa0023040:CDS |
| CTATTGTGCACATCATGCAA+AGG | 0.664889 | 1_1:-43663280 | Msa0023040:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1_1:+43664707 | None:intergenic |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1_1:-43663250 | Msa0023040:CDS |
| AGGGTGATGGAGGAAATAGG+TGG | 0.693358 | 1_1:-43665379 | None:intergenic |
| AGTGTTGATCAAGTGAGGGG+AGG | 0.733239 | 1_1:-43665355 | Msa0023040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGACATTAATTAAT+AGG | + | chr1_1:43664225-43664244 | None:intergenic | 10.0% |
| !!! | TTAGTAACTATTTTTTTTAT+TGG | - | chr1_1:43664603-43664622 | Msa0023040:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTTG+AGG | - | chr1_1:43664722-43664741 | Msa0023040:CDS | 10.0% |
| !! | AAATAATGACATTAATTAAT+AGG | + | chr1_1:43664225-43664244 | None:intergenic | 10.0% |
| !!! | TTAGTAACTATTTTTTTTAT+TGG | - | chr1_1:43664603-43664622 | Msa0023040:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTTG+AGG | - | chr1_1:43664722-43664741 | Msa0023040:CDS | 10.0% |
| !!! | TTGTTTTTATTTTAGTATAG+AGG | + | chr1_1:43664181-43664200 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1_1:43664208-43664227 | None:intergenic | 15.0% |
| !! | TAATAGGATAAATTAAATGA+AGG | + | chr1_1:43664209-43664228 | None:intergenic | 15.0% |
| !!! | TAAAAAAAAAGTGTAATTCA+TGG | + | chr1_1:43664503-43664522 | None:intergenic | 15.0% |
| !!! | TGAATTACACTTTTTTTTTA+TGG | - | chr1_1:43664503-43664522 | Msa0023040:intron | 15.0% |
| !!! | TTATGTTATGGTTTTAAATT+TGG | - | chr1_1:43664983-43665002 | Msa0023040:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1_1:43665270-43665289 | Msa0023040:CDS | 15.0% |
| !!! | TTGTTTTTATTTTAGTATAG+AGG | + | chr1_1:43664181-43664200 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1_1:43664208-43664227 | None:intergenic | 15.0% |
| !! | TAATAGGATAAATTAAATGA+AGG | + | chr1_1:43664209-43664228 | None:intergenic | 15.0% |
| !!! | TAAAAAAAAAGTGTAATTCA+TGG | + | chr1_1:43664503-43664522 | None:intergenic | 15.0% |
| !!! | TGAATTACACTTTTTTTTTA+TGG | - | chr1_1:43664503-43664522 | Msa0023040:intron | 15.0% |
| !!! | TTATGTTATGGTTTTAAATT+TGG | - | chr1_1:43664983-43665002 | Msa0023040:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1_1:43665270-43665289 | Msa0023040:CDS | 15.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1_1:43663581-43663600 | Msa0023040:intron | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1_1:43663611-43663630 | Msa0023040:intron | 20.0% |
| !! | ACTTTCATCTATTTATGTTA+TGG | - | chr1_1:43664971-43664990 | Msa0023040:intron | 20.0% |
| !!! | AATAAGCTTGCTAATAATTT+TGG | - | chr1_1:43665227-43665246 | Msa0023040:CDS | 20.0% |
| !!! | TAATTTTGGTTTCTTTTATG+CGG | - | chr1_1:43665241-43665260 | Msa0023040:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1_1:43665273-43665292 | Msa0023040:CDS | 20.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1_1:43663581-43663600 | Msa0023040:intron | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1_1:43663611-43663630 | Msa0023040:intron | 20.0% |
| !! | ACTTTCATCTATTTATGTTA+TGG | - | chr1_1:43664971-43664990 | Msa0023040:intron | 20.0% |
| !!! | AATAAGCTTGCTAATAATTT+TGG | - | chr1_1:43665227-43665246 | Msa0023040:CDS | 20.0% |
| !!! | TAATTTTGGTTTCTTTTATG+CGG | - | chr1_1:43665241-43665260 | Msa0023040:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1_1:43665273-43665292 | Msa0023040:CDS | 20.0% |
| ! | GAATTAGACATGGAAAAAAA+AGG | + | chr1_1:43663548-43663567 | None:intergenic | 25.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1_1:43663558-43663577 | None:intergenic | 25.0% |
| ! | ATGGATAAAAAGATGTTGAA+AGG | + | chr1_1:43663816-43663835 | None:intergenic | 25.0% |
| ! | TTTCACGATAAACAGAAAAT+AGG | - | chr1_1:43664125-43664144 | Msa0023040:intron | 25.0% |
| ! | TTCACGATAAACAGAAAATA+GGG | - | chr1_1:43664126-43664145 | Msa0023040:intron | 25.0% |
| !! | TGAAAGGAAGATTTTCTTTT+TGG | + | chr1_1:43664154-43664173 | None:intergenic | 25.0% |
| ! | TGTTTCGAATTTCAATTATC+TGG | + | chr1_1:43664274-43664293 | None:intergenic | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1_1:43664388-43664407 | None:intergenic | 25.0% |
| ! | ATTCATGGTACAAAAATGAA+AGG | + | chr1_1:43664488-43664507 | None:intergenic | 25.0% |
| ! | GTAATATTGCATATGTTAGA+TGG | - | chr1_1:43664880-43664899 | Msa0023040:intron | 25.0% |
| ! | TTTCATATGCATACTTTCAT+TGG | + | chr1_1:43665039-43665058 | None:intergenic | 25.0% |
| ! | GAATTAGACATGGAAAAAAA+AGG | + | chr1_1:43663548-43663567 | None:intergenic | 25.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1_1:43663558-43663577 | None:intergenic | 25.0% |
| ! | ATGGATAAAAAGATGTTGAA+AGG | + | chr1_1:43663816-43663835 | None:intergenic | 25.0% |
| ! | TTTCACGATAAACAGAAAAT+AGG | - | chr1_1:43664125-43664144 | Msa0023040:intron | 25.0% |
| ! | TTCACGATAAACAGAAAATA+GGG | - | chr1_1:43664126-43664145 | Msa0023040:intron | 25.0% |
| !! | TGAAAGGAAGATTTTCTTTT+TGG | + | chr1_1:43664154-43664173 | None:intergenic | 25.0% |
| ! | TGTTTCGAATTTCAATTATC+TGG | + | chr1_1:43664274-43664293 | None:intergenic | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1_1:43664388-43664407 | None:intergenic | 25.0% |
| ! | ATTCATGGTACAAAAATGAA+AGG | + | chr1_1:43664488-43664507 | None:intergenic | 25.0% |
| ! | GTAATATTGCATATGTTAGA+TGG | - | chr1_1:43664880-43664899 | Msa0023040:intron | 25.0% |
| ! | TTTCATATGCATACTTTCAT+TGG | + | chr1_1:43665039-43665058 | None:intergenic | 25.0% |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1_1:43663452-43663471 | None:intergenic | 30.0% | |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1_1:43663585-43663604 | Msa0023040:intron | 30.0% | |
| AACTTACACAGATGTATTCT+CGG | + | chr1_1:43663723-43663742 | None:intergenic | 30.0% | |
| ATGTTGAAAGGACAAGAAAA+AGG | + | chr1_1:43663804-43663823 | None:intergenic | 30.0% | |
| TTCAAAGAATCTGCAATTTC+AGG | + | chr1_1:43663844-43663863 | None:intergenic | 30.0% | |
| ATTAACTACCACTCAGATAA+GGG | + | chr1_1:43664018-43664037 | None:intergenic | 30.0% | |
| ATTTCCCATTCCTTTGTATT+GGG | + | chr1_1:43664073-43664092 | None:intergenic | 30.0% | |
| AATTTCCCATTCCTTTGTAT+TGG | + | chr1_1:43664074-43664093 | None:intergenic | 30.0% | |
| TCACGATAAACAGAAAATAG+GGG | - | chr1_1:43664127-43664146 | Msa0023040:intron | 30.0% | |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1_1:43664170-43664189 | None:intergenic | 30.0% | |
| CAGGATAGTAGTAAAATCAA+CGG | - | chr1_1:43664310-43664329 | Msa0023040:intron | 30.0% | |
| TCTATTCTAAACCATGAGAT+TGG | + | chr1_1:43664447-43664466 | None:intergenic | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1_1:43664648-43664667 | Msa0023040:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1_1:43665033-43665052 | None:intergenic | 30.0% | |
| AAGTATGCATATGAAAATGC+AGG | - | chr1_1:43665043-43665062 | Msa0023040:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1_1:43663452-43663471 | None:intergenic | 30.0% | |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1_1:43663585-43663604 | Msa0023040:intron | 30.0% | |
| AACTTACACAGATGTATTCT+CGG | + | chr1_1:43663723-43663742 | None:intergenic | 30.0% | |
| ATGTTGAAAGGACAAGAAAA+AGG | + | chr1_1:43663804-43663823 | None:intergenic | 30.0% | |
| TTCAAAGAATCTGCAATTTC+AGG | + | chr1_1:43663844-43663863 | None:intergenic | 30.0% | |
| ATTAACTACCACTCAGATAA+GGG | + | chr1_1:43664018-43664037 | None:intergenic | 30.0% | |
| ATTTCCCATTCCTTTGTATT+GGG | + | chr1_1:43664073-43664092 | None:intergenic | 30.0% | |
| AATTTCCCATTCCTTTGTAT+TGG | + | chr1_1:43664074-43664093 | None:intergenic | 30.0% | |
| TCACGATAAACAGAAAATAG+GGG | - | chr1_1:43664127-43664146 | Msa0023040:intron | 30.0% | |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1_1:43664170-43664189 | None:intergenic | 30.0% | |
| CAGGATAGTAGTAAAATCAA+CGG | - | chr1_1:43664310-43664329 | Msa0023040:intron | 30.0% | |
| TCTATTCTAAACCATGAGAT+TGG | + | chr1_1:43664447-43664466 | None:intergenic | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1_1:43664648-43664667 | Msa0023040:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1_1:43665033-43665052 | None:intergenic | 30.0% | |
| AAGTATGCATATGAAAATGC+AGG | - | chr1_1:43665043-43665062 | Msa0023040:intron | 30.0% | |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_1:43663280-43663299 | Msa0023040:CDS | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1_1:43663331-43663350 | Msa0023040:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1_1:43663397-43663416 | Msa0023040:intron | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1_1:43663400-43663419 | Msa0023040:intron | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1_1:43663401-43663420 | Msa0023040:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1_1:43663463-43663482 | Msa0023040:CDS | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1_1:43663464-43663483 | Msa0023040:CDS | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1_1:43663491-43663510 | None:intergenic | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1_1:43663624-43663643 | None:intergenic | 35.0% | |
| CAGAAATGAGCAAAATCAGA+TGG | + | chr1_1:43663668-43663687 | None:intergenic | 35.0% | |
| ATTCTCGGTATGAGTTAACT+CGG | + | chr1_1:43663708-43663727 | None:intergenic | 35.0% | |
| ACGGGAATGAGAAAAATAGA+TGG | - | chr1_1:43663764-43663783 | Msa0023040:intron | 35.0% | |
| CGGGAATGAGAAAAATAGAT+GGG | - | chr1_1:43663765-43663784 | Msa0023040:intron | 35.0% | |
| CATTAACTACCACTCAGATA+AGG | + | chr1_1:43664019-43664038 | None:intergenic | 35.0% | |
| AACTCCCAATACAAAGGAAT+GGG | - | chr1_1:43664066-43664085 | Msa0023040:intron | 35.0% | |
| CACGATAAACAGAAAATAGG+GGG | - | chr1_1:43664128-43664147 | Msa0023040:intron | 35.0% | |
| !! | TTTTTAGGGAACCAATCTCA+TGG | - | chr1_1:43664433-43664452 | Msa0023040:intron | 35.0% |
| CATAGTATATATGCACGACT+AGG | + | chr1_1:43664540-43664559 | None:intergenic | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1_1:43664544-43664563 | Msa0023040:intron | 35.0% | |
| ATTAAGATGCTCTTTAGCCA+AGG | + | chr1_1:43664564-43664583 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1_1:43665071-43665090 | Msa0023040:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1_1:43665097-43665116 | Msa0023040:intron | 35.0% |
| AATAGTCACTTACACTTCCA+AGG | + | chr1_1:43665308-43665327 | None:intergenic | 35.0% | |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1_1:43663280-43663299 | Msa0023040:CDS | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1_1:43663331-43663350 | Msa0023040:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1_1:43663397-43663416 | Msa0023040:intron | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1_1:43663400-43663419 | Msa0023040:intron | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1_1:43663401-43663420 | Msa0023040:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1_1:43663463-43663482 | Msa0023040:CDS | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1_1:43663464-43663483 | Msa0023040:CDS | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1_1:43663491-43663510 | None:intergenic | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1_1:43663624-43663643 | None:intergenic | 35.0% | |
| CAGAAATGAGCAAAATCAGA+TGG | + | chr1_1:43663668-43663687 | None:intergenic | 35.0% | |
| ATTCTCGGTATGAGTTAACT+CGG | + | chr1_1:43663708-43663727 | None:intergenic | 35.0% | |
| ACGGGAATGAGAAAAATAGA+TGG | - | chr1_1:43663764-43663783 | Msa0023040:intron | 35.0% | |
| CGGGAATGAGAAAAATAGAT+GGG | - | chr1_1:43663765-43663784 | Msa0023040:intron | 35.0% | |
| CATTAACTACCACTCAGATA+AGG | + | chr1_1:43664019-43664038 | None:intergenic | 35.0% | |
| AACTCCCAATACAAAGGAAT+GGG | - | chr1_1:43664066-43664085 | Msa0023040:intron | 35.0% | |
| CACGATAAACAGAAAATAGG+GGG | - | chr1_1:43664128-43664147 | Msa0023040:intron | 35.0% | |
| !! | TTTTTAGGGAACCAATCTCA+TGG | - | chr1_1:43664433-43664452 | Msa0023040:intron | 35.0% |
| CATAGTATATATGCACGACT+AGG | + | chr1_1:43664540-43664559 | None:intergenic | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1_1:43664544-43664563 | Msa0023040:intron | 35.0% | |
| ATTAAGATGCTCTTTAGCCA+AGG | + | chr1_1:43664564-43664583 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1_1:43665071-43665090 | Msa0023040:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1_1:43665097-43665116 | Msa0023040:intron | 35.0% |
| AATAGTCACTTACACTTCCA+AGG | + | chr1_1:43665308-43665327 | None:intergenic | 35.0% | |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_1:43663244-43663263 | Msa0023040:CDS | 40.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_1:43663286-43663305 | Msa0023040:CDS | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1_1:43663330-43663349 | Msa0023040:intron | 40.0% | |
| ! | AGCGTTGAAGAGGTTATCAA+GGG | + | chr1_1:43663357-43663376 | None:intergenic | 40.0% |
| ! | TAGCGTTGAAGAGGTTATCA+AGG | + | chr1_1:43663358-43663377 | None:intergenic | 40.0% |
| TGATAACCTCTTCAACGCTA+TGG | - | chr1_1:43663358-43663377 | Msa0023040:intron | 40.0% | |
| ATGGCTACTGTTACTATGGA+TGG | - | chr1_1:43663377-43663396 | Msa0023040:intron | 40.0% | |
| ATCTGAAAATGAGGAGGGAA+TGG | - | chr1_1:43663406-43663425 | Msa0023040:intron | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1_1:43663460-43663479 | None:intergenic | 40.0% | |
| AGGAAGTAAGCAGAGAAAGT+TGG | + | chr1_1:43663528-43663547 | None:intergenic | 40.0% | |
| TTCTCGGTATGAGTTAACTC+GGG | + | chr1_1:43663707-43663726 | None:intergenic | 40.0% | |
| !! | TCTGCAATTTCAGGTGTTGA+TGG | + | chr1_1:43663835-43663854 | None:intergenic | 40.0% |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1_1:43663872-43663891 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1_1:43663873-43663892 | None:intergenic | 40.0% |
| TGTTCATTCCCTTATCTGAG+TGG | - | chr1_1:43664007-43664026 | Msa0023040:intron | 40.0% | |
| GAGTTCAACTCCCAATACAA+AGG | - | chr1_1:43664060-43664079 | Msa0023040:intron | 40.0% | |
| CAACTCCCAATACAAAGGAA+TGG | - | chr1_1:43664065-43664084 | Msa0023040:intron | 40.0% | |
| ACAGACATTATTCTCTCGTC+AGG | - | chr1_1:43664291-43664310 | Msa0023040:intron | 40.0% | |
| ! | CAAGTTGACCTCTTAGTCAT+GGG | - | chr1_1:43665134-43665153 | Msa0023040:CDS | 40.0% |
| !!! | CTTACCTTTTGAGTTTGCCA+AGG | + | chr1_1:43665169-43665188 | None:intergenic | 40.0% |
| ! | GGTTTCTTTTATGCGGTTGA+TGG | - | chr1_1:43665248-43665267 | Msa0023040:CDS | 40.0% |
| CTATTGTGCACATCATGCAA+AGG | - | chr1_1:43665323-43665342 | Msa0023040:CDS | 40.0% | |
| !! | TGGAAGTGTTGATCAAGTGA+GGG | - | chr1_1:43663244-43663263 | Msa0023040:CDS | 40.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1_1:43663286-43663305 | Msa0023040:CDS | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1_1:43663330-43663349 | Msa0023040:intron | 40.0% | |
| ! | AGCGTTGAAGAGGTTATCAA+GGG | + | chr1_1:43663357-43663376 | None:intergenic | 40.0% |
| ! | TAGCGTTGAAGAGGTTATCA+AGG | + | chr1_1:43663358-43663377 | None:intergenic | 40.0% |
| TGATAACCTCTTCAACGCTA+TGG | - | chr1_1:43663358-43663377 | Msa0023040:intron | 40.0% | |
| ATGGCTACTGTTACTATGGA+TGG | - | chr1_1:43663377-43663396 | Msa0023040:intron | 40.0% | |
| ATCTGAAAATGAGGAGGGAA+TGG | - | chr1_1:43663406-43663425 | Msa0023040:intron | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1_1:43663460-43663479 | None:intergenic | 40.0% | |
| AGGAAGTAAGCAGAGAAAGT+TGG | + | chr1_1:43663528-43663547 | None:intergenic | 40.0% | |
| TTCTCGGTATGAGTTAACTC+GGG | + | chr1_1:43663707-43663726 | None:intergenic | 40.0% | |
| !! | TCTGCAATTTCAGGTGTTGA+TGG | + | chr1_1:43663835-43663854 | None:intergenic | 40.0% |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1_1:43663872-43663891 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1_1:43663873-43663892 | None:intergenic | 40.0% |
| TGTTCATTCCCTTATCTGAG+TGG | - | chr1_1:43664007-43664026 | Msa0023040:intron | 40.0% | |
| GAGTTCAACTCCCAATACAA+AGG | - | chr1_1:43664060-43664079 | Msa0023040:intron | 40.0% | |
| CAACTCCCAATACAAAGGAA+TGG | - | chr1_1:43664065-43664084 | Msa0023040:intron | 40.0% | |
| ACAGACATTATTCTCTCGTC+AGG | - | chr1_1:43664291-43664310 | Msa0023040:intron | 40.0% | |
| ! | CAAGTTGACCTCTTAGTCAT+GGG | - | chr1_1:43665134-43665153 | Msa0023040:CDS | 40.0% |
| !!! | CTTACCTTTTGAGTTTGCCA+AGG | + | chr1_1:43665169-43665188 | None:intergenic | 40.0% |
| ! | GGTTTCTTTTATGCGGTTGA+TGG | - | chr1_1:43665248-43665267 | Msa0023040:CDS | 40.0% |
| CTATTGTGCACATCATGCAA+AGG | - | chr1_1:43665323-43665342 | Msa0023040:CDS | 40.0% | |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_1:43663243-43663262 | Msa0023040:CDS | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_1:43663245-43663264 | Msa0023040:CDS | 45.0% |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1_1:43663267-43663286 | Msa0023040:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_1:43663289-43663308 | Msa0023040:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_1:43663308-43663327 | Msa0023040:intron | 45.0% | |
| CGCTATGGCTACTGTTACTA+TGG | - | chr1_1:43663373-43663392 | Msa0023040:intron | 45.0% | |
| CAGATGGAAGAAGAGCAGTT+TGG | + | chr1_1:43663652-43663671 | None:intergenic | 45.0% | |
| !! | GTCACGCTCAGCTATTTTGA+CGG | - | chr1_1:43663745-43663764 | Msa0023040:intron | 45.0% |
| !!! | TCACGCTCAGCTATTTTGAC+GGG | - | chr1_1:43663746-43663765 | Msa0023040:intron | 45.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1_1:43663881-43663900 | Msa0023040:intron | 45.0% | |
| ! | GCAAGTTGACCTCTTAGTCA+TGG | - | chr1_1:43665133-43665152 | Msa0023040:CDS | 45.0% |
| CACGATTACCCATGACTAAG+AGG | + | chr1_1:43665145-43665164 | None:intergenic | 45.0% | |
| CTCTTAGTCATGGGTAATCG+TGG | - | chr1_1:43665143-43665162 | Msa0023040:CDS | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_1:43665351-43665370 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_1:43665369-43665388 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_1:43665372-43665391 | None:intergenic | 45.0% |
| !! | GTGGAAGTGTTGATCAAGTG+AGG | - | chr1_1:43663243-43663262 | Msa0023040:CDS | 45.0% |
| !! | GGAAGTGTTGATCAAGTGAG+GGG | - | chr1_1:43663245-43663264 | Msa0023040:CDS | 45.0% |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1_1:43663267-43663286 | Msa0023040:CDS | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1_1:43663289-43663308 | Msa0023040:CDS | 45.0% |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1_1:43663308-43663327 | Msa0023040:intron | 45.0% | |
| CGCTATGGCTACTGTTACTA+TGG | - | chr1_1:43663373-43663392 | Msa0023040:intron | 45.0% | |
| CAGATGGAAGAAGAGCAGTT+TGG | + | chr1_1:43663652-43663671 | None:intergenic | 45.0% | |
| !! | GTCACGCTCAGCTATTTTGA+CGG | - | chr1_1:43663745-43663764 | Msa0023040:intron | 45.0% |
| !!! | TCACGCTCAGCTATTTTGAC+GGG | - | chr1_1:43663746-43663765 | Msa0023040:intron | 45.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1_1:43663881-43663900 | Msa0023040:intron | 45.0% | |
| ! | GCAAGTTGACCTCTTAGTCA+TGG | - | chr1_1:43665133-43665152 | Msa0023040:CDS | 45.0% |
| CACGATTACCCATGACTAAG+AGG | + | chr1_1:43665145-43665164 | None:intergenic | 45.0% | |
| CTCTTAGTCATGGGTAATCG+TGG | - | chr1_1:43665143-43665162 | Msa0023040:CDS | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1_1:43665351-43665370 | None:intergenic | 45.0% | |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1_1:43665369-43665388 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1_1:43665372-43665391 | None:intergenic | 45.0% |
| !!! | AAAGATTTTTTTTTTTTTTT+AGG | - | chr1_1:43664418-43664437 | Msa0023040:intron | 5.0% |
| !!! | AAGATTTTTTTTTTTTTTTA+GGG | - | chr1_1:43664419-43664438 | Msa0023040:intron | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1_1:43664783-43664802 | None:intergenic | 5.0% |
| !!! | TAAAATTAATAACTTTTTAT+TGG | + | chr1_1:43664845-43664864 | None:intergenic | 5.0% |
| !!! | CATAAATATTAAATAAATTT+TGG | + | chr1_1:43664941-43664960 | None:intergenic | 5.0% |
| !!! | AAAGATTTTTTTTTTTTTTT+AGG | - | chr1_1:43664418-43664437 | Msa0023040:intron | 5.0% |
| !!! | AAGATTTTTTTTTTTTTTTA+GGG | - | chr1_1:43664419-43664438 | Msa0023040:intron | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1_1:43664783-43664802 | None:intergenic | 5.0% |
| !!! | TAAAATTAATAACTTTTTAT+TGG | + | chr1_1:43664845-43664864 | None:intergenic | 5.0% |
| !!! | CATAAATATTAAATAAATTT+TGG | + | chr1_1:43664941-43664960 | None:intergenic | 5.0% |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_1:43663248-43663267 | Msa0023040:CDS | 50.0% |
| ! | CAGTAGCCATAGCGTTGAAG+AGG | + | chr1_1:43663367-43663386 | None:intergenic | 50.0% |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1_1:43663475-43663494 | None:intergenic | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1_1:43663882-43663901 | Msa0023040:intron | 50.0% | |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1_1:43663900-43663919 | Msa0023040:intron | 50.0% | |
| GCAAATGTGCAAGGACAAGC+AGG | - | chr1_1:43663909-43663928 | Msa0023040:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1_1:43665162-43665181 | Msa0023040:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1_1:43665288-43665307 | Msa0023040:CDS | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_1:43665353-43665372 | Msa0023040:CDS | 50.0% | |
| !! | AGTGTTGATCAAGTGAGGGG+AGG | - | chr1_1:43663248-43663267 | Msa0023040:CDS | 50.0% |
| ! | CAGTAGCCATAGCGTTGAAG+AGG | + | chr1_1:43663367-43663386 | None:intergenic | 50.0% |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1_1:43663475-43663494 | None:intergenic | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1_1:43663882-43663901 | Msa0023040:intron | 50.0% | |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1_1:43663900-43663919 | Msa0023040:intron | 50.0% | |
| GCAAATGTGCAAGGACAAGC+AGG | - | chr1_1:43663909-43663928 | Msa0023040:intron | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1_1:43665162-43665181 | Msa0023040:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1_1:43665288-43665307 | Msa0023040:CDS | 50.0% |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1_1:43665353-43665372 | Msa0023040:CDS | 50.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1_1:43663476-43663495 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1_1:43663473-43663492 | Msa0023040:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1_1:43663482-43663501 | None:intergenic | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1_1:43663479-43663498 | Msa0023040:CDS | 55.0% | |
| CGGTATGAGTTAACTCGGGC+AGG | + | chr1_1:43663703-43663722 | None:intergenic | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1_1:43663899-43663918 | None:intergenic | 55.0% | |
| TGTGCAAGGACAAGCAGGTG+CGG | - | chr1_1:43663914-43663933 | Msa0023040:intron | 55.0% | |
| GTCATGGGTAATCGTGGCCT+TGG | - | chr1_1:43665149-43665168 | Msa0023040:CDS | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1_1:43663476-43663495 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1_1:43663473-43663492 | Msa0023040:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1_1:43663482-43663501 | None:intergenic | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1_1:43663479-43663498 | Msa0023040:CDS | 55.0% | |
| CGGTATGAGTTAACTCGGGC+AGG | + | chr1_1:43663703-43663722 | None:intergenic | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1_1:43663899-43663918 | None:intergenic | 55.0% | |
| TGTGCAAGGACAAGCAGGTG+CGG | - | chr1_1:43663914-43663933 | Msa0023040:intron | 55.0% | |
| GTCATGGGTAATCGTGGCCT+TGG | - | chr1_1:43665149-43665168 | Msa0023040:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 43663230 | 43665395 | 43663230 | ID=Msa0023040;Name=Msa0023040 |
| chr1_1 | mRNA | 43663230 | 43665395 | 43663230 | ID=Msa0023040-mRNA-1;Parent=Msa0023040;Name=Msa0023040-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|4|0|187 |
| chr1_1 | exon | 43665125 | 43665395 | 43665125 | ID=Msa0023040-mRNA-1:exon:12647;Parent=Msa0023040-mRNA-1 |
| chr1_1 | exon | 43664695 | 43664771 | 43664695 | ID=Msa0023040-mRNA-1:exon:12646;Parent=Msa0023040-mRNA-1 |
| chr1_1 | exon | 43663442 | 43663560 | 43663442 | ID=Msa0023040-mRNA-1:exon:12645;Parent=Msa0023040-mRNA-1 |
| chr1_1 | exon | 43663230 | 43663326 | 43663230 | ID=Msa0023040-mRNA-1:exon:12644;Parent=Msa0023040-mRNA-1 |
| chr1_1 | CDS | 43665125 | 43665395 | 43665125 | ID=Msa0023040-mRNA-1:cds;Parent=Msa0023040-mRNA-1 |
| chr1_1 | CDS | 43664695 | 43664771 | 43664695 | ID=Msa0023040-mRNA-1:cds;Parent=Msa0023040-mRNA-1 |
| chr1_1 | CDS | 43663442 | 43663560 | 43663442 | ID=Msa0023040-mRNA-1:cds;Parent=Msa0023040-mRNA-1 |
| chr1_1 | CDS | 43663230 | 43663326 | 43663230 | ID=Msa0023040-mRNA-1:cds;Parent=Msa0023040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
