AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0162120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162120 MtrunA17_Chr1g0176321 94.350 177 10 0 21 197 1 177 1.35e-126 353
Msa0162120 MtrunA17_Chr1g0176311 79.695 197 33 5 1 197 1 190 1.47e-107 306
Msa0162120 MtrunA17_Chr1g0192651 37.989 179 88 4 13 191 3 158 4.19e-33 116
Msa0162120 MtrunA17_Chr1g0195661 38.251 183 95 4 13 194 2 167 1.41e-32 115
Msa0162120 MtrunA17_Chr1g0194801 37.288 177 88 6 17 190 2 158 8.23e-30 107
Msa0162120 MtrunA17_Chr5g0427291 36.047 172 91 7 25 188 10 170 3.22e-27 101
Msa0162120 MtrunA17_Chr7g0269301 34.483 174 95 4 22 194 7 162 3.94e-22 88.2
Msa0162120 MtrunA17_Chr4g0032261 32.530 166 97 3 24 188 6 157 7.10e-19 79.7
Msa0162120 MtrunA17_Chr2g0323291 30.601 183 94 6 24 194 26 187 7.01e-18 78.6
Msa0162120 MtrunA17_Chr4g0001641 45.902 61 33 0 128 188 5 65 1.26e-16 71.2
Msa0162120 MtrunA17_Chr2g0294421 30.460 174 102 4 24 194 6 163 2.10e-15 70.5
Msa0162120 MtrunA17_Chr4g0008801 30.723 166 94 4 27 188 9 157 3.92e-15 69.7
Msa0162120 MtrunA17_Chr6g0450171 31.034 87 60 0 102 188 76 162 4.69e-15 69.7
Msa0162120 MtrunA17_Chr5g0433951 29.167 192 85 7 25 197 7 166 5.89e-15 69.3
Msa0162120 MtrunA17_Chr7g0240701 28.743 167 102 4 24 188 6 157 2.16e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0162120 AT3G11930.1 56.395 172 69 3 24 195 34 199 8.23e-67 203
Msa0162120 AT3G11930.2 56.647 173 68 4 24 195 34 200 8.88e-66 201
Msa0162120 AT3G11930.4 56.322 174 68 4 24 195 34 201 1.34e-65 201
Msa0162120 AT3G11930.3 49.246 199 68 5 24 195 34 226 7.92e-60 187
Msa0162120 AT3G58450.1 51.786 168 74 3 25 192 32 192 1.28e-53 170
Msa0162120 AT3G58450.2 50.000 168 70 3 25 192 32 185 3.16e-51 164
Msa0162120 AT1G09740.2 36.416 173 91 4 25 192 10 168 3.70e-30 109
Msa0162120 AT1G09740.1 36.416 173 91 4 25 192 10 168 3.70e-30 109
Msa0162120 AT3G62550.1 35.928 167 87 4 24 188 8 156 8.87e-28 103
Msa0162120 AT2G47710.1 33.918 171 94 4 22 191 7 159 1.84e-27 102
Msa0162120 AT1G68300.1 33.143 175 97 3 15 188 2 157 4.06e-24 93.6
Msa0162120 AT3G01520.1 25.843 178 97 5 24 188 7 162 3.29e-15 70.5
Msa0162120 AT5G14680.1 30.612 98 67 1 91 188 66 162 1.53e-14 68.9
Msa0162120 AT3G03270.2 32.530 166 95 4 25 188 7 157 1.01e-13 66.2
Msa0162120 AT3G53990.1 29.070 172 95 6 27 191 9 160 2.16e-13 65.5
Msa0162120 AT3G17020.1 30.058 173 93 5 24 188 8 160 3.62e-13 64.7
Msa0162120 AT1G11360.2 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0162120 AT1G11360.1 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0162120 AT1G11360.4 27.222 180 103 6 22 192 37 197 5.62e-13 65.9
Msa0162120 AT1G11360.3 27.222 180 103 6 22 192 37 197 5.62e-13 65.9

Find 63 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTTAAGTATATCTTCTA+TGG 0.174763 1_4:-38485196 Msa0162120:three_prime_UTR
CGTTATGGCTACTGATACTA+TGG 0.183037 1_4:-38487218 Msa0162120:CDS
GCAGAAAGTGTGATTCTTAA+TGG 0.228368 1_4:-38485536 Msa0162120:CDS
TATGCATAAGTGTGGAAATT+TGG 0.264690 1_4:+38487142 None:intergenic
TATTTCTAATTGAATAATCT+TGG 0.297973 1_4:-38485120 Msa0162120:three_prime_UTR
GGCTAAGTCTGGAATAATAT+TGG 0.318765 1_4:-38485170 Msa0162120:three_prime_UTR
CCAGCTGGTCCCATAGGTAT+AGG 0.340250 1_4:+38487118 None:intergenic
TTCAAAGAATCCCCAACTTC+AGG 0.340569 1_4:+38486737 None:intergenic
ATCCATCAACACCTGAAGTT+GGG 0.365371 1_4:-38486748 Msa0162120:CDS
AAAAGGGTGATGGAGGAAAT+AGG 0.378001 1_4:-38487370 None:intergenic
TGATAACCTCTTCAACGTTA+TGG 0.381044 1_4:-38487233 Msa0162120:CDS
GCAAGTTGATCTCTTAATCA+TGG 0.412365 1_4:-38485474 Msa0162120:CDS
CAGCTGGTCCCATAGGTATA+GGG 0.428625 1_4:+38487119 None:intergenic
ATTTCTAATTGAATAATCTT+GGG 0.429529 1_4:-38485119 Msa0162120:three_prime_UTR
TTCTATGGGATGGCTAAGTC+TGG 0.444356 1_4:-38485181 Msa0162120:three_prime_UTR
ATCATGGGTAGTCGTGGCCT+TGG 0.451807 1_4:-38485458 Msa0162120:CDS
TCCCCAACTTCAGGTGTTGA+TGG 0.458443 1_4:+38486746 None:intergenic
TATCCATCAACACCTGAAGT+TGG 0.466557 1_4:-38486749 Msa0162120:CDS
CCTATGGGACCAGCTGGTAT+TGG 0.470932 1_4:-38487112 Msa0162120:intron
TTATGCATACCCTATACCTA+TGG 0.478213 1_4:-38487128 Msa0162120:CDS
ATCTGCAGCTATTGCCTCAC+GGG 0.482712 1_4:-38486696 Msa0162120:CDS
TGCAAGAGAAATGATTAGTC+AGG 0.497260 1_4:-38485510 Msa0162120:CDS
TGTTTAAGTATATCTTCTAT+GGG 0.497538 1_4:-38485195 Msa0162120:three_prime_UTR
GAAGCTTGTATGCTCTTAAG+TGG 0.498753 1_4:-38487261 Msa0162120:CDS
GTGGCCTTGGCAAACTCAAA+AGG 0.501962 1_4:-38485445 Msa0162120:intron
TTTGGTGGCAGAGCCTTCCT+TGG 0.503463 1_4:-38485317 Msa0162120:intron
GCAAATGTGCAAGGATAAGC+AGG 0.503833 1_4:-38486669 Msa0162120:intron
GGTGGCTTCACAATGAGAAT+AGG 0.504003 1_4:+38485257 None:intergenic
TGGAAGTGTTGATCAAGTGA+GGG 0.512230 1_4:-38487347 Msa0162120:CDS
TAAGTATATCTTCTATGGGA+TGG 0.519898 1_4:-38485191 Msa0162120:three_prime_UTR
CCAATACCAGCTGGTCCCAT+AGG 0.522576 1_4:+38487112 None:intergenic
AAAGAGAAGGATGAAGATGA+AGG 0.523647 1_4:-38487311 Msa0162120:CDS
TAACGTTGAAGAGGTTATCA+AGG 0.523668 1_4:+38487236 None:intergenic
ATCTGAAAATGAGGAGGGGA+TGG 0.523730 1_4:-38487185 Msa0162120:CDS
TCCATCAACACCTGAAGTTG+GGG 0.531250 1_4:-38486747 Msa0162120:CDS
CTCTTAATCATGGGTAGTCG+TGG 0.541714 1_4:-38485464 Msa0162120:CDS
AATAGTCACTTACACTTCCA+AGG 0.548894 1_4:+38485300 None:intergenic
TGGAACAACATCTGAAAATG+AGG 0.557443 1_4:-38487194 Msa0162120:CDS
ATGGCTACTGATACTATGGA+TGG 0.557940 1_4:-38487214 Msa0162120:CDS
CAAGTTGATCTCTTAATCAT+GGG 0.558572 1_4:-38485473 Msa0162120:CDS
GTGGAAGTGTTGATCAAGTG+AGG 0.562018 1_4:-38487348 Msa0162120:CDS
GTCACTTACACTTCCAAGGA+AGG 0.566492 1_4:+38485304 None:intergenic
CAGTAGCCATAACGTTGAAG+AGG 0.571035 1_4:+38487227 None:intergenic
CCTATACCTATGGGACCAGC+TGG 0.573743 1_4:-38487118 Msa0162120:CDS
GAGGTGCAGAAGAAAAGAGA+AGG 0.584561 1_4:-38487324 Msa0162120:CDS
TATGCATACCCTATACCTAT+GGG 0.588273 1_4:-38487127 Msa0162120:CDS
AATCTGCAGCTATTGCCTCA+CGG 0.590946 1_4:-38486697 Msa0162120:CDS
GTATAGGGTATGCATAAGTG+TGG 0.596401 1_4:+38487134 None:intergenic
ACGGGCTTTGCAAATGTGCA+AGG 0.605600 1_4:-38486678 Msa0162120:CDS
GATGAAGATGAAGGTGATGG+TGG 0.605709 1_4:-38487302 Msa0162120:CDS
ATATACTAACCAATACCAGC+TGG 0.608648 1_4:+38487103 None:intergenic
GGAAGTGTTGATCAAGTGAG+GGG 0.617330 1_4:-38487346 Msa0162120:CDS
ACAACATCTGAAAATGAGGA+GGG 0.619877 1_4:-38487190 Msa0162120:CDS
AACAACATCTGAAAATGAGG+AGG 0.624375 1_4:-38487191 Msa0162120:CDS
AACGTTGAAGAGGTTATCAA+GGG 0.625008 1_4:+38487237 None:intergenic
AAGGATGAAGATGAAGGTGA+TGG 0.645453 1_4:-38487305 Msa0162120:CDS
AAGCTTGTATGCTCTTAAGT+GGG 0.653871 1_4:-38487260 Msa0162120:CDS
GTGGCAATAGATGAGAGTGA+TGG 0.658459 1_4:-38487283 Msa0162120:CDS
CAACATCTGAAAATGAGGAG+GGG 0.662503 1_4:-38487189 Msa0162120:CDS
GCACATTTGCAAAGCCCGTG+AGG 0.665936 1_4:+38486682 None:intergenic
TCTCATTGTGAAGCCACCAG+AGG 0.677993 1_4:-38485252 Msa0162120:CDS
AGGGTGATGGAGGAAATAGG+TGG 0.693358 1_4:-38487367 None:intergenic
AGTGTTGATCAAGTGAGGGG+AGG 0.733239 1_4:-38487343 Msa0162120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATATAAAATATACAAT+TGG + chr1_4:38486547-38486566 None:intergenic 10.0%
!! CGTAAATATTAAATAAATTT+AGG + chr1_4:38486705-38486724 None:intergenic 10.0%
!! GTTAATATAAAATATACAAT+TGG + chr1_4:38486547-38486566 None:intergenic 10.0%
!! CGTAAATATTAAATAAATTT+AGG + chr1_4:38486705-38486724 None:intergenic 10.0%
!!! TTAATATTGTCTATTTTTCT+TGG - chr1_4:38485425-38485444 Msa0162120:intron 15.0%
!!! TGTTTTTATTTTTAGTATAG+AGG + chr1_4:38486058-38486077 None:intergenic 15.0%
!! AATAGGATAAATTAAATGAA+GGG + chr1_4:38486114-38486133 None:intergenic 15.0%
!! TAATAGGATAAATTAAATGA+AGG + chr1_4:38486115-38486134 None:intergenic 15.0%
!! GAATAATGACATTAATTAAT+AGG + chr1_4:38486131-38486150 None:intergenic 15.0%
!! AACTAAAATAATTTCTTTGA+CGG - chr1_4:38486398-38486417 Msa0162120:intron 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - chr1_4:38486780-38486799 Msa0162120:intron 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - chr1_4:38487069-38487088 Msa0162120:intron 15.0%
!!! TATTTCTAATTGAATAATCT+TGG - chr1_4:38487284-38487303 Msa0162120:CDS 15.0%
!! ATTTCTAATTGAATAATCTT+GGG - chr1_4:38487285-38487304 Msa0162120:CDS 15.0%
!!! TTAATATTGTCTATTTTTCT+TGG - chr1_4:38485425-38485444 Msa0162120:intron 15.0%
!!! TGTTTTTATTTTTAGTATAG+AGG + chr1_4:38486058-38486077 None:intergenic 15.0%
!! AATAGGATAAATTAAATGAA+GGG + chr1_4:38486114-38486133 None:intergenic 15.0%
!! TAATAGGATAAATTAAATGA+AGG + chr1_4:38486115-38486134 None:intergenic 15.0%
!! GAATAATGACATTAATTAAT+AGG + chr1_4:38486131-38486150 None:intergenic 15.0%
!! AACTAAAATAATTTCTTTGA+CGG - chr1_4:38486398-38486417 Msa0162120:intron 15.0%
!!! TAAATTATGGCTTTTAAATT+TGG - chr1_4:38486780-38486799 Msa0162120:intron 15.0%
!!! GTTCTAATATTTTTTACATT+TGG - chr1_4:38487069-38487088 Msa0162120:intron 15.0%
!!! TATTTCTAATTGAATAATCT+TGG - chr1_4:38487284-38487303 Msa0162120:CDS 15.0%
!! ATTTCTAATTGAATAATCTT+GGG - chr1_4:38487285-38487304 Msa0162120:CDS 15.0%
!! GAATTAGACATGTAAAAAAA+AGG + chr1_4:38485361-38485380 None:intergenic 20.0%
!! AAAAATGATGTAACTTTGTA+AGG - chr1_4:38485394-38485413 Msa0162120:intron 20.0%
!!! GTTAATTGTCACTTATATTA+GGG + chr1_4:38485852-38485871 None:intergenic 20.0%
!!! AGTTAATTGTCACTTATATT+AGG + chr1_4:38485853-38485872 None:intergenic 20.0%
!! TTTCATGATAAACAGAAAAT+AGG - chr1_4:38485967-38485986 Msa0162120:intron 20.0%
!! TTCATGATAAACAGAAAATA+GGG - chr1_4:38485968-38485987 Msa0162120:intron 20.0%
!!! AAAGGAAGATTATTTTTTGA+AGG + chr1_4:38486029-38486048 None:intergenic 20.0%
!!! AAAATACCCTTCATTTTTTT+TGG - chr1_4:38486077-38486096 Msa0162120:intron 20.0%
!! TTGTAACCAAAAAAAATGAA+GGG + chr1_4:38486086-38486105 None:intergenic 20.0%
!! TTTGTAACCAAAAAAAATGA+AGG + chr1_4:38486087-38486106 None:intergenic 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - chr1_4:38486746-38486765 Msa0162120:CDS 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - chr1_4:38487040-38487059 Msa0162120:intron 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - chr1_4:38487072-38487091 Msa0162120:intron 20.0%
!! ATGTTTAAGTATATCTTCTA+TGG - chr1_4:38487208-38487227 Msa0162120:CDS 20.0%
!! TGTTTAAGTATATCTTCTAT+GGG - chr1_4:38487209-38487228 Msa0162120:CDS 20.0%
!! GAATTAGACATGTAAAAAAA+AGG + chr1_4:38485361-38485380 None:intergenic 20.0%
!! AAAAATGATGTAACTTTGTA+AGG - chr1_4:38485394-38485413 Msa0162120:intron 20.0%
!!! GTTAATTGTCACTTATATTA+GGG + chr1_4:38485852-38485871 None:intergenic 20.0%
!!! AGTTAATTGTCACTTATATT+AGG + chr1_4:38485853-38485872 None:intergenic 20.0%
!! TTTCATGATAAACAGAAAAT+AGG - chr1_4:38485967-38485986 Msa0162120:intron 20.0%
!! TTCATGATAAACAGAAAATA+GGG - chr1_4:38485968-38485987 Msa0162120:intron 20.0%
!!! AAAGGAAGATTATTTTTTGA+AGG + chr1_4:38486029-38486048 None:intergenic 20.0%
!!! AAAATACCCTTCATTTTTTT+TGG - chr1_4:38486077-38486096 Msa0162120:intron 20.0%
!! TTGTAACCAAAAAAAATGAA+GGG + chr1_4:38486086-38486105 None:intergenic 20.0%
!! TTTGTAACCAAAAAAAATGA+AGG + chr1_4:38486087-38486106 None:intergenic 20.0%
!!! GTGATGATGTTTTAAAAATT+CGG - chr1_4:38486746-38486765 Msa0162120:CDS 20.0%
!!! ATTTTGATTTCATTTATGCA+TGG - chr1_4:38487040-38487059 Msa0162120:intron 20.0%
!!! CTAATATTTTTTACATTTGG+TGG - chr1_4:38487072-38487091 Msa0162120:intron 20.0%
!! ATGTTTAAGTATATCTTCTA+TGG - chr1_4:38487208-38487227 Msa0162120:CDS 20.0%
!! TGTTTAAGTATATCTTCTAT+GGG - chr1_4:38487209-38487228 Msa0162120:CDS 20.0%
!!! GGGAATGAACAATTTTAAAA+GGG + chr1_4:38485832-38485851 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + chr1_4:38485833-38485852 None:intergenic 25.0%
! TCATGATAAACAGAAAATAG+GGG - chr1_4:38485969-38485988 Msa0162120:intron 25.0%
!!! GAAGATTATTTTTTGAAGGA+AGG + chr1_4:38486025-38486044 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + chr1_4:38486291-38486310 None:intergenic 25.0%
! GTAATATTGCATATGTTAGA+CGG - chr1_4:38486644-38486663 Msa0162120:intron 25.0%
!!! ACTATGATCAATGCTTTTTA+TGG + chr1_4:38487182-38487201 None:intergenic 25.0%
!!! GGGAATGAACAATTTTAAAA+GGG + chr1_4:38485832-38485851 None:intergenic 25.0%
!! AGGGAATGAACAATTTTAAA+AGG + chr1_4:38485833-38485852 None:intergenic 25.0%
! TCATGATAAACAGAAAATAG+GGG - chr1_4:38485969-38485988 Msa0162120:intron 25.0%
!!! GAAGATTATTTTTTGAAGGA+AGG + chr1_4:38486025-38486044 None:intergenic 25.0%
! TTCTCGTAGACAATATAATT+TGG + chr1_4:38486291-38486310 None:intergenic 25.0%
! GTAATATTGCATATGTTAGA+CGG - chr1_4:38486644-38486663 Msa0162120:intron 25.0%
!!! ACTATGATCAATGCTTTTTA+TGG + chr1_4:38487182-38487201 None:intergenic 25.0%
TATGCATAAGTGTGGAAATT+TGG + chr1_4:38485265-38485284 None:intergenic 30.0%
AACTTACACAAGTGTATTCT+CGG + chr1_4:38485536-38485555 None:intergenic 30.0%
! CAAAGTATCACACAAGAAAA+AGG + chr1_4:38485618-38485637 None:intergenic 30.0%
TTCCCATTCCTTTATATCAA+CGG + chr1_4:38485913-38485932 None:intergenic 30.0%
CATGATAAACAGAAAATAGG+GGG - chr1_4:38485970-38485989 Msa0162120:intron 30.0%
!! AAAGGAAGATGATTGCTTTT+TGG + chr1_4:38485996-38486015 None:intergenic 30.0%
TTAGTATAGAGGAAAGTGAA+AGG + chr1_4:38486047-38486066 None:intergenic 30.0%
! ACGGAAGTGTATTAAATCTA+TGG - chr1_4:38486417-38486436 Msa0162120:intron 30.0%
! CGGAAGTGTATTAAATCTAT+GGG - chr1_4:38486418-38486437 Msa0162120:intron 30.0%
GGTAGAAGCTACATAAATTA+TGG - chr1_4:38486767-38486786 Msa0162120:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + chr1_4:38486830-38486849 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + chr1_4:38486836-38486855 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - chr1_4:38486931-38486950 Msa0162120:intron 30.0%
TTTCATTTATGCATGGTTGA+TGG - chr1_4:38487047-38487066 Msa0162120:intron 30.0%
TAAGTATATCTTCTATGGGA+TGG - chr1_4:38487213-38487232 Msa0162120:CDS 30.0%
TATGCATAAGTGTGGAAATT+TGG + chr1_4:38485265-38485284 None:intergenic 30.0%
AACTTACACAAGTGTATTCT+CGG + chr1_4:38485536-38485555 None:intergenic 30.0%
! CAAAGTATCACACAAGAAAA+AGG + chr1_4:38485618-38485637 None:intergenic 30.0%
TTCCCATTCCTTTATATCAA+CGG + chr1_4:38485913-38485932 None:intergenic 30.0%
CATGATAAACAGAAAATAGG+GGG - chr1_4:38485970-38485989 Msa0162120:intron 30.0%
!! AAAGGAAGATGATTGCTTTT+TGG + chr1_4:38485996-38486015 None:intergenic 30.0%
TTAGTATAGAGGAAAGTGAA+AGG + chr1_4:38486047-38486066 None:intergenic 30.0%
! ACGGAAGTGTATTAAATCTA+TGG - chr1_4:38486417-38486436 Msa0162120:intron 30.0%
! CGGAAGTGTATTAAATCTAT+GGG - chr1_4:38486418-38486437 Msa0162120:intron 30.0%
GGTAGAAGCTACATAAATTA+TGG - chr1_4:38486767-38486786 Msa0162120:intron 30.0%
ATGCATACTTTCATTGGATT+TGG + chr1_4:38486830-38486849 None:intergenic 30.0%
TCATTGATGCATACTTTCAT+TGG + chr1_4:38486836-38486855 None:intergenic 30.0%
!! CAAGTTGATCTCTTAATCAT+GGG - chr1_4:38486931-38486950 Msa0162120:intron 30.0%
TTTCATTTATGCATGGTTGA+TGG - chr1_4:38487047-38487066 Msa0162120:intron 30.0%
TAAGTATATCTTCTATGGGA+TGG - chr1_4:38487213-38487232 Msa0162120:CDS 30.0%
AAAGAGAAGGATGAAGATGA+AGG - chr1_4:38485093-38485112 Msa0162120:three_prime_UTR 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - chr1_4:38485144-38485163 Msa0162120:three_prime_UTR 35.0%
AACGTTGAAGAGGTTATCAA+GGG + chr1_4:38485170-38485189 None:intergenic 35.0%
TAACGTTGAAGAGGTTATCA+AGG + chr1_4:38485171-38485190 None:intergenic 35.0%
TGATAACCTCTTCAACGTTA+TGG - chr1_4:38485171-38485190 Msa0162120:three_prime_UTR 35.0%
TGGAACAACATCTGAAAATG+AGG - chr1_4:38485210-38485229 Msa0162120:three_prime_UTR 35.0%
AACAACATCTGAAAATGAGG+AGG - chr1_4:38485213-38485232 Msa0162120:exon 35.0%
ACAACATCTGAAAATGAGGA+GGG - chr1_4:38485214-38485233 Msa0162120:exon 35.0%
TTATGCATACCCTATACCTA+TGG - chr1_4:38485276-38485295 Msa0162120:CDS 35.0%
TATGCATACCCTATACCTAT+GGG - chr1_4:38485277-38485296 Msa0162120:CDS 35.0%
ATATACTAACCAATACCAGC+TGG + chr1_4:38485304-38485323 None:intergenic 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + chr1_4:38485341-38485360 None:intergenic 35.0%
GCAGAAATGAGAAAATCAGA+TGG + chr1_4:38485482-38485501 None:intergenic 35.0%
TGTGTAAGTTAATTCACGCT+CGG - chr1_4:38485546-38485565 Msa0162120:intron 35.0%
GGGAATGAGCAAAAATAGAT+GGG - chr1_4:38485579-38485598 Msa0162120:intron 35.0%
ATGGATAAACAGCTGTTGAA+AGG + chr1_4:38485642-38485661 None:intergenic 35.0%
AGTTACTGCCGTTGATATAA+AGG - chr1_4:38485902-38485921 Msa0162120:intron 35.0%
TGCCGTTGATATAAAGGAAT+GGG - chr1_4:38485908-38485927 Msa0162120:intron 35.0%
TTTGAAGGAAGGAAAGTGAA+AGG + chr1_4:38486014-38486033 None:intergenic 35.0%
ACAAACATTATTCTCTCGTC+AGG - chr1_4:38486197-38486216 Msa0162120:intron 35.0%
CGTCAGGATAGTAAAATCAA+CGG - chr1_4:38486213-38486232 Msa0162120:intron 35.0%
AAGTATGCATCAATGAAAGC+AGG - chr1_4:38486840-38486859 Msa0162120:intron 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - chr1_4:38486868-38486887 Msa0162120:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - chr1_4:38486894-38486913 Msa0162120:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - chr1_4:38486930-38486949 Msa0162120:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + chr1_4:38487107-38487126 None:intergenic 35.0%
! GGCTAAGTCTGGAATAATAT+TGG - chr1_4:38487234-38487253 Msa0162120:CDS 35.0%
AAAGAGAAGGATGAAGATGA+AGG - chr1_4:38485093-38485112 Msa0162120:three_prime_UTR 35.0%
AAGCTTGTATGCTCTTAAGT+GGG - chr1_4:38485144-38485163 Msa0162120:three_prime_UTR 35.0%
AACGTTGAAGAGGTTATCAA+GGG + chr1_4:38485170-38485189 None:intergenic 35.0%
TAACGTTGAAGAGGTTATCA+AGG + chr1_4:38485171-38485190 None:intergenic 35.0%
TGATAACCTCTTCAACGTTA+TGG - chr1_4:38485171-38485190 Msa0162120:three_prime_UTR 35.0%
TGGAACAACATCTGAAAATG+AGG - chr1_4:38485210-38485229 Msa0162120:three_prime_UTR 35.0%
AACAACATCTGAAAATGAGG+AGG - chr1_4:38485213-38485232 Msa0162120:exon 35.0%
ACAACATCTGAAAATGAGGA+GGG - chr1_4:38485214-38485233 Msa0162120:exon 35.0%
TTATGCATACCCTATACCTA+TGG - chr1_4:38485276-38485295 Msa0162120:CDS 35.0%
TATGCATACCCTATACCTAT+GGG - chr1_4:38485277-38485296 Msa0162120:CDS 35.0%
ATATACTAACCAATACCAGC+TGG + chr1_4:38485304-38485323 None:intergenic 35.0%
AGGAAGTAAGCAAAGAAAGT+TGG + chr1_4:38485341-38485360 None:intergenic 35.0%
GCAGAAATGAGAAAATCAGA+TGG + chr1_4:38485482-38485501 None:intergenic 35.0%
TGTGTAAGTTAATTCACGCT+CGG - chr1_4:38485546-38485565 Msa0162120:intron 35.0%
GGGAATGAGCAAAAATAGAT+GGG - chr1_4:38485579-38485598 Msa0162120:intron 35.0%
ATGGATAAACAGCTGTTGAA+AGG + chr1_4:38485642-38485661 None:intergenic 35.0%
AGTTACTGCCGTTGATATAA+AGG - chr1_4:38485902-38485921 Msa0162120:intron 35.0%
TGCCGTTGATATAAAGGAAT+GGG - chr1_4:38485908-38485927 Msa0162120:intron 35.0%
TTTGAAGGAAGGAAAGTGAA+AGG + chr1_4:38486014-38486033 None:intergenic 35.0%
ACAAACATTATTCTCTCGTC+AGG - chr1_4:38486197-38486216 Msa0162120:intron 35.0%
CGTCAGGATAGTAAAATCAA+CGG - chr1_4:38486213-38486232 Msa0162120:intron 35.0%
AAGTATGCATCAATGAAAGC+AGG - chr1_4:38486840-38486859 Msa0162120:intron 35.0%
! GCAGAAAGTGTGATTCTTAA+TGG - chr1_4:38486868-38486887 Msa0162120:intron 35.0%
! TGCAAGAGAAATGATTAGTC+AGG - chr1_4:38486894-38486913 Msa0162120:intron 35.0%
!! GCAAGTTGATCTCTTAATCA+TGG - chr1_4:38486930-38486949 Msa0162120:intron 35.0%
AATAGTCACTTACACTTCCA+AGG + chr1_4:38487107-38487126 None:intergenic 35.0%
! GGCTAAGTCTGGAATAATAT+TGG - chr1_4:38487234-38487253 Msa0162120:CDS 35.0%
!! TGGAAGTGTTGATCAAGTGA+GGG - chr1_4:38485057-38485076 Msa0162120:three_prime_UTR 40.0%
AAGGATGAAGATGAAGGTGA+TGG - chr1_4:38485099-38485118 Msa0162120:three_prime_UTR 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - chr1_4:38485143-38485162 Msa0162120:three_prime_UTR 40.0%
CGTTATGGCTACTGATACTA+TGG - chr1_4:38485186-38485205 Msa0162120:three_prime_UTR 40.0%
ATGGCTACTGATACTATGGA+TGG - chr1_4:38485190-38485209 Msa0162120:three_prime_UTR 40.0%
CAACATCTGAAAATGAGGAG+GGG - chr1_4:38485215-38485234 Msa0162120:exon 40.0%
GTATAGGGTATGCATAAGTG+TGG + chr1_4:38485273-38485292 None:intergenic 40.0%
CAGATGGAAGAAGAGCAATT+TGG + chr1_4:38485466-38485485 None:intergenic 40.0%
TTCTCGGTATGAGTTAACTC+AGG + chr1_4:38485520-38485539 None:intergenic 40.0%
CGGGAATGAGCAAAAATAGA+TGG - chr1_4:38485578-38485597 Msa0162120:intron 40.0%
TATCCATCAACACCTGAAGT+TGG - chr1_4:38485655-38485674 Msa0162120:intron 40.0%
ATCCATCAACACCTGAAGTT+GGG - chr1_4:38485656-38485675 Msa0162120:intron 40.0%
TTCAAAGAATCCCCAACTTC+AGG + chr1_4:38485670-38485689 None:intergenic 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + chr1_4:38485698-38485717 None:intergenic 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + chr1_4:38485699-38485718 None:intergenic 40.0%
CTGCCGTTGATATAAAGGAA+TGG - chr1_4:38485907-38485926 Msa0162120:intron 40.0%
GAAATGAGTCTCGCTTTACA+AGG + chr1_4:38486348-38486367 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + chr1_4:38486370-38486389 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + chr1_4:38486966-38486985 None:intergenic 40.0%
!! TGGAAGTGTTGATCAAGTGA+GGG - chr1_4:38485057-38485076 Msa0162120:three_prime_UTR 40.0%
AAGGATGAAGATGAAGGTGA+TGG - chr1_4:38485099-38485118 Msa0162120:three_prime_UTR 40.0%
GAAGCTTGTATGCTCTTAAG+TGG - chr1_4:38485143-38485162 Msa0162120:three_prime_UTR 40.0%
CGTTATGGCTACTGATACTA+TGG - chr1_4:38485186-38485205 Msa0162120:three_prime_UTR 40.0%
ATGGCTACTGATACTATGGA+TGG - chr1_4:38485190-38485209 Msa0162120:three_prime_UTR 40.0%
CAACATCTGAAAATGAGGAG+GGG - chr1_4:38485215-38485234 Msa0162120:exon 40.0%
GTATAGGGTATGCATAAGTG+TGG + chr1_4:38485273-38485292 None:intergenic 40.0%
CAGATGGAAGAAGAGCAATT+TGG + chr1_4:38485466-38485485 None:intergenic 40.0%
TTCTCGGTATGAGTTAACTC+AGG + chr1_4:38485520-38485539 None:intergenic 40.0%
CGGGAATGAGCAAAAATAGA+TGG - chr1_4:38485578-38485597 Msa0162120:intron 40.0%
TATCCATCAACACCTGAAGT+TGG - chr1_4:38485655-38485674 Msa0162120:intron 40.0%
ATCCATCAACACCTGAAGTT+GGG - chr1_4:38485656-38485675 Msa0162120:intron 40.0%
TTCAAAGAATCCCCAACTTC+AGG + chr1_4:38485670-38485689 None:intergenic 40.0%
! AGCTGCAGATTTTTCTTGCT+GGG + chr1_4:38485698-38485717 None:intergenic 40.0%
! TAGCTGCAGATTTTTCTTGC+TGG + chr1_4:38485699-38485718 None:intergenic 40.0%
CTGCCGTTGATATAAAGGAA+TGG - chr1_4:38485907-38485926 Msa0162120:intron 40.0%
GAAATGAGTCTCGCTTTACA+AGG + chr1_4:38486348-38486367 None:intergenic 40.0%
! TTTTTACGGAACTTCCGTCA+AGG + chr1_4:38486370-38486389 None:intergenic 40.0%
!!! CTTACCTTTTGAGTTTGCCA+AGG + chr1_4:38486966-38486985 None:intergenic 40.0%
!! GTGGAAGTGTTGATCAAGTG+AGG - chr1_4:38485056-38485075 Msa0162120:three_prime_UTR 45.0%
!! GGAAGTGTTGATCAAGTGAG+GGG - chr1_4:38485058-38485077 Msa0162120:three_prime_UTR 45.0%
GAGGTGCAGAAGAAAAGAGA+AGG - chr1_4:38485080-38485099 Msa0162120:three_prime_UTR 45.0%
! GATGAAGATGAAGGTGATGG+TGG - chr1_4:38485102-38485121 Msa0162120:three_prime_UTR 45.0%
GTGGCAATAGATGAGAGTGA+TGG - chr1_4:38485121-38485140 Msa0162120:three_prime_UTR 45.0%
CAGTAGCCATAACGTTGAAG+AGG + chr1_4:38485180-38485199 None:intergenic 45.0%
ATCTGAAAATGAGGAGGGGA+TGG - chr1_4:38485219-38485238 Msa0162120:exon 45.0%
!! TTCACGCTCGGCTATTTTGA+CGG - chr1_4:38485558-38485577 Msa0162120:intron 45.0%
TCCATCAACACCTGAAGTTG+GGG - chr1_4:38485657-38485676 Msa0162120:intron 45.0%
AATCTGCAGCTATTGCCTCA+CGG - chr1_4:38485707-38485726 Msa0162120:intron 45.0%
GCAAATGTGCAAGGATAAGC+AGG - chr1_4:38485735-38485754 Msa0162120:intron 45.0%
AGCGAGACTCATTTCCTTGA+CGG - chr1_4:38486353-38486372 Msa0162120:intron 45.0%
CTCTTAATCATGGGTAGTCG+TGG - chr1_4:38486940-38486959 Msa0162120:intron 45.0%
GTCACTTACACTTCCAAGGA+AGG + chr1_4:38487103-38487122 None:intergenic 45.0%
GGTGGCTTCACAATGAGAAT+AGG + chr1_4:38487150-38487169 None:intergenic 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + chr1_4:38487168-38487187 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + chr1_4:38487171-38487190 None:intergenic 45.0%
TTCTATGGGATGGCTAAGTC+TGG - chr1_4:38487223-38487242 Msa0162120:CDS 45.0%
!! GTGGAAGTGTTGATCAAGTG+AGG - chr1_4:38485056-38485075 Msa0162120:three_prime_UTR 45.0%
!! GGAAGTGTTGATCAAGTGAG+GGG - chr1_4:38485058-38485077 Msa0162120:three_prime_UTR 45.0%
GAGGTGCAGAAGAAAAGAGA+AGG - chr1_4:38485080-38485099 Msa0162120:three_prime_UTR 45.0%
! GATGAAGATGAAGGTGATGG+TGG - chr1_4:38485102-38485121 Msa0162120:three_prime_UTR 45.0%
GTGGCAATAGATGAGAGTGA+TGG - chr1_4:38485121-38485140 Msa0162120:three_prime_UTR 45.0%
CAGTAGCCATAACGTTGAAG+AGG + chr1_4:38485180-38485199 None:intergenic 45.0%
ATCTGAAAATGAGGAGGGGA+TGG - chr1_4:38485219-38485238 Msa0162120:exon 45.0%
!! TTCACGCTCGGCTATTTTGA+CGG - chr1_4:38485558-38485577 Msa0162120:intron 45.0%
TCCATCAACACCTGAAGTTG+GGG - chr1_4:38485657-38485676 Msa0162120:intron 45.0%
AATCTGCAGCTATTGCCTCA+CGG - chr1_4:38485707-38485726 Msa0162120:intron 45.0%
GCAAATGTGCAAGGATAAGC+AGG - chr1_4:38485735-38485754 Msa0162120:intron 45.0%
AGCGAGACTCATTTCCTTGA+CGG - chr1_4:38486353-38486372 Msa0162120:intron 45.0%
CTCTTAATCATGGGTAGTCG+TGG - chr1_4:38486940-38486959 Msa0162120:intron 45.0%
GTCACTTACACTTCCAAGGA+AGG + chr1_4:38487103-38487122 None:intergenic 45.0%
GGTGGCTTCACAATGAGAAT+AGG + chr1_4:38487150-38487169 None:intergenic 45.0%
! TTTTTATGGTGCTCCTCTGG+TGG + chr1_4:38487168-38487187 None:intergenic 45.0%
!! TGCTTTTTATGGTGCTCCTC+TGG + chr1_4:38487171-38487190 None:intergenic 45.0%
TTCTATGGGATGGCTAAGTC+TGG - chr1_4:38487223-38487242 Msa0162120:CDS 45.0%
!!! TTAGTTTTTTTTTTTTTTTA+CGG + chr1_4:38486384-38486403 None:intergenic 5.0%
!!! TTAGTTTTTTTTTTTTTTTA+CGG + chr1_4:38486384-38486403 None:intergenic 5.0%
!! AGTGTTGATCAAGTGAGGGG+AGG - chr1_4:38485061-38485080 Msa0162120:three_prime_UTR 50.0%
CAGCTGGTCCCATAGGTATA+GGG + chr1_4:38485288-38485307 None:intergenic 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr1_4:38485559-38485578 Msa0162120:intron 50.0%
!! TCCCCAACTTCAGGTGTTGA+TGG + chr1_4:38485661-38485680 None:intergenic 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - chr1_4:38485708-38485727 Msa0162120:intron 50.0%
ACGGGCTTTGCAAATGTGCA+AGG - chr1_4:38485726-38485745 Msa0162120:intron 50.0%
TGTGCAAGGATAAGCAGGTG+CGG - chr1_4:38485740-38485759 Msa0162120:intron 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - chr1_4:38486959-38486978 Msa0162120:intron 50.0%
TCTCATTGTGAAGCCACCAG+AGG - chr1_4:38487152-38487171 Msa0162120:CDS 50.0%
!! AGTGTTGATCAAGTGAGGGG+AGG - chr1_4:38485061-38485080 Msa0162120:three_prime_UTR 50.0%
CAGCTGGTCCCATAGGTATA+GGG + chr1_4:38485288-38485307 None:intergenic 50.0%
!!! TCACGCTCGGCTATTTTGAC+GGG - chr1_4:38485559-38485578 Msa0162120:intron 50.0%
!! TCCCCAACTTCAGGTGTTGA+TGG + chr1_4:38485661-38485680 None:intergenic 50.0%
ATCTGCAGCTATTGCCTCAC+GGG - chr1_4:38485708-38485727 Msa0162120:intron 50.0%
ACGGGCTTTGCAAATGTGCA+AGG - chr1_4:38485726-38485745 Msa0162120:intron 50.0%
TGTGCAAGGATAAGCAGGTG+CGG - chr1_4:38485740-38485759 Msa0162120:intron 50.0%
! GTGGCCTTGGCAAACTCAAA+AGG - chr1_4:38486959-38486978 Msa0162120:intron 50.0%
TCTCATTGTGAAGCCACCAG+AGG - chr1_4:38487152-38487171 Msa0162120:CDS 50.0%
CCAGCTGGTCCCATAGGTAT+AGG + chr1_4:38485289-38485308 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - chr1_4:38485286-38485305 Msa0162120:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + chr1_4:38485295-38485314 None:intergenic 55.0%
CCTATGGGACCAGCTGGTAT+TGG - chr1_4:38485292-38485311 Msa0162120:CDS 55.0%
GCACATTTGCAAAGCCCGTG+AGG + chr1_4:38485725-38485744 None:intergenic 55.0%
ATCATGGGTAGTCGTGGCCT+TGG - chr1_4:38486946-38486965 Msa0162120:intron 55.0%
! TTTGGTGGCAGAGCCTTCCT+TGG - chr1_4:38487087-38487106 Msa0162120:intron 55.0%
CCAGCTGGTCCCATAGGTAT+AGG + chr1_4:38485289-38485308 None:intergenic 55.0%
CCTATACCTATGGGACCAGC+TGG - chr1_4:38485286-38485305 Msa0162120:CDS 55.0%
CCAATACCAGCTGGTCCCAT+AGG + chr1_4:38485295-38485314 None:intergenic 55.0%
CCTATGGGACCAGCTGGTAT+TGG - chr1_4:38485292-38485311 Msa0162120:CDS 55.0%
GCACATTTGCAAAGCCCGTG+AGG + chr1_4:38485725-38485744 None:intergenic 55.0%
ATCATGGGTAGTCGTGGCCT+TGG - chr1_4:38486946-38486965 Msa0162120:intron 55.0%
! TTTGGTGGCAGAGCCTTCCT+TGG - chr1_4:38487087-38487106 Msa0162120:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 38485043 38487383 38485043 ID=Msa0162120;Name=Msa0162120
chr1_4 mRNA 38485043 38487383 38485043 ID=Msa0162120-mRNA-1;Parent=Msa0162120;Name=Msa0162120-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|1|0.75|1|1|1|4|189|197
chr1_4 exon 38485043 38485328 38485043 ID=Msa0162120-mRNA-1:exon:11290;Parent=Msa0162120-mRNA-1
chr1_4 exon 38485446 38485564 38485446 ID=Msa0162120-mRNA-1:exon:11289;Parent=Msa0162120-mRNA-1
chr1_4 exon 38486670 38486776 38486670 ID=Msa0162120-mRNA-1:exon:11288;Parent=Msa0162120-mRNA-1
chr1_4 exon 38487113 38487383 38487113 ID=Msa0162120-mRNA-1:exon:11287;Parent=Msa0162120-mRNA-1
chr1_4 CDS 38487113 38487383 38487113 ID=Msa0162120-mRNA-1:cds;Parent=Msa0162120-mRNA-1
chr1_4 CDS 38486670 38486776 38486670 ID=Msa0162120-mRNA-1:cds;Parent=Msa0162120-mRNA-1
chr1_4 CDS 38485446 38485564 38485446 ID=Msa0162120-mRNA-1:cds;Parent=Msa0162120-mRNA-1
chr1_4 CDS 38485232 38485328 38485232 ID=Msa0162120-mRNA-1:cds;Parent=Msa0162120-mRNA-1
chr1_4 three_prime_UTR 38485043 38485231 38485043 ID=Msa0162120-mRNA-1:three_prime_utr;Parent=Msa0162120-mRNA-1
Gene Sequence

>Msa0162120

ATGGAGGAAATAGGTGGAAGTGTTGATCAAGTGAGGGGAGGTGCAGAAGAAAAGAGAAGGATGAAGATGAAGGTGATGGTGGCAATAGATGAGAGTGATGGAAGCTTGTATGCTCTTAAGTGGGCCCTTGATAACCTCTTCAACGTTATGGCTACTGATACTATGGATGGAACAACATCTGAAAATGAGGAGGGGATGGTGTTTCTTGTTCATGTTGAGCCAAATTTCCACACTTATGCATACCCTATACCTATGGGACCAGCTGGTATTGCTGTTTATCCATCAACACCTGAAGTTGGGGATTCTTTGAAGAAAGCCCAGCAAGAAAAATCTGCAGCTATTGCCTCACGGGCTTTGCAAATGTGCAAGGATAAGCAGGTAAAAGCAGAAAGTGTGATTCTTAATGGAGATGCAAGAGAAATGATTAGTCAGGCTACAGAGAAAATGCAAGTTGATCTCTTAATCATGGGTAGTCGTGGCCTTGGCAAACTCAAAAGAGCCTTCCTTGGAAGTGTAAGTGACTATTGTGCACATCATGCAAAAGCACCTATTCTCATTGTGAAGCCACCAGAGGAGCACCATAAAAAGCATTGA
Protein sequence

>Msa0162120

MEEIGGSVDQVRGGAEEKRRMKMKVMVAIDESDGSLYALKWALDNLFNVMATDTMDGTTSENEEGMVFLVHVEPNFHTYAYPIPMGPAGIAVYPSTPEVGDSLKKAQQEKSAAIASRALQMCKDKQVKAESVILNGDAREMISQATEKMQVDLLIMGSRGLGKLKRAFLGSVSDYCAHHAKAPILIVKPPEEHHKKH*