Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177940 | RHN81593.1 | 88.679 | 159 | 7 | 2 | 8 | 155 | 32 | 190 | 5.15e-87 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177940 | A0A396JZJ9 | 88.679 | 159 | 7 | 2 | 8 | 155 | 32 | 190 | 2.46e-87 | 262 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037230 | Msa0177940 | 0.930333 | 1.907659e-93 | -8.615850e-47 |
| Msa0071640 | Msa0177940 | 0.804600 | 1.998216e-49 | -8.615850e-47 |
| Msa0085020 | Msa0177940 | 0.869679 | 2.584433e-66 | -8.615850e-47 |
| Msa0168320 | Msa0177940 | 0.812813 | 3.509483e-51 | -8.615850e-47 |
| Msa0177940 | Msa0195030 | 0.827653 | 1.388892e-54 | -8.615850e-47 |
| Msa0177940 | Msa0225370 | -0.821328 | 4.279693e-53 | -8.615850e-47 |
| Msa0177940 | Msa0226580 | -0.800899 | 1.160464e-48 | -8.615850e-47 |
| Msa0177940 | Msa0237180 | 0.822594 | 2.178882e-53 | -8.615850e-47 |
| Msa0177940 | Msa0266380 | -0.858418 | 8.349163e-63 | -8.615850e-47 |
| Msa0177940 | Msa0274940 | 0.828929 | 6.839189e-55 | -8.615850e-47 |
| Msa0177940 | Msa0315660 | 0.827122 | 1.862476e-54 | -8.615850e-47 |
| Msa0177940 | Msa0341860 | -0.846644 | 1.907695e-59 | -8.615850e-47 |
| Msa0177940 | Msa0378620 | -0.841380 | 4.921159e-58 | -8.615850e-47 |
| Msa0177940 | Msa0382670 | 0.854092 | 1.549415e-61 | -8.615850e-47 |
| Msa0177940 | Msa0416470 | 0.835541 | 1.579983e-56 | -8.615850e-47 |
| Msa0177940 | Msa0432260 | -0.801682 | 8.023827e-49 | -8.615850e-47 |
| Msa0177940 | Msa0476730 | -0.810424 | 1.160690e-50 | -8.615850e-47 |
| Msa0177940 | Msa0521100 | -0.809393 | 1.935163e-50 | -8.615850e-47 |
| Msa0177940 | Msa0621190 | 0.812206 | 4.763622e-51 | -8.615850e-47 |
| Msa0177940 | Msa0646180 | -0.808562 | 2.914615e-50 | -8.615850e-47 |
| Msa0177940 | Msa0691760 | 0.812584 | 3.939166e-51 | -8.615850e-47 |
| Msa0177940 | Msa1152860 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0177940 | Msa1266570 | -0.820495 | 6.656803e-53 | -8.615850e-47 |
| Msa0177940 | Msa1276070 | -0.809798 | 1.583422e-50 | -8.615850e-47 |
| Msa0177940 | Msa1333400 | -0.800374 | 1.485430e-48 | -8.615850e-47 |
| Msa0177940 | Msa1359880 | -0.800382 | 1.479632e-48 | -8.615850e-47 |
| Msa0177940 | Msa1389340 | 0.922652 | 7.444030e-89 | -8.615850e-47 |
| Msa0177940 | Msa1453380 | 0.813457 | 2.535339e-51 | -8.615850e-47 |
| Msa0177940 | Msa1465700 | 0.812419 | 4.280226e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177940 | MtrunA17_Chr1g0200861 | 88.679 | 159 | 7 | 2 | 8 | 155 | 32 | 190 | 4.74e-91 | 262 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177940 | AT1G71865.1 | 65.306 | 98 | 29 | 4 | 57 | 152 | 1 | 95 | 1.48e-28 | 101 |
Find 41 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTTGCCATTGTTCTTT+TGG | 0.201399 | 1_4:-65286989 | Msa0177940:three_prime_UTR |
| TGTCACCATCACACTCTTTC+AGG | 0.206894 | 1_4:-65287457 | Msa0177940:CDS |
| TCTATCAAGGTTAATTATGA+AGG | 0.433912 | 1_4:-65286922 | Msa0177940:three_prime_UTR |
| AAGAACAATGGCAAAGCAAA+TGG | 0.453315 | 1_4:+65286993 | None:intergenic |
| CCAGGTATCTCAGTGTTACT+AGG | 0.459360 | 1_4:+65287302 | None:intergenic |
| ATCTCAGTGTTACTAGGTTG+AGG | 0.466517 | 1_4:+65287308 | None:intergenic |
| TAATATCTAGTTATCTATCA+AGG | 0.483873 | 1_4:-65286935 | Msa0177940:three_prime_UTR |
| GGAGGGACATAGTACAAGAT+TGG | 0.483942 | 1_4:-65287247 | Msa0177940:CDS |
| AACGTGCTGGAGAAAGACTA+AGG | 0.512886 | 1_4:-65287192 | Msa0177940:three_prime_UTR |
| CTCTCCTCTTCTCTCAAACG+AGG | 0.513321 | 1_4:-65289110 | Msa0177940:intron |
| TCTCAGTGTTACTAGGTTGA+GGG | 0.523772 | 1_4:+65287309 | None:intergenic |
| ACTAGGTTGAGGGGTAACTT+TGG | 0.527701 | 1_4:+65287319 | None:intergenic |
| CTTACAAGCCGCGGAGGACC+AGG | 0.527990 | 1_4:+65287284 | None:intergenic |
| GCAAGAAAAGAGTGTACAGT+AGG | 0.530811 | 1_4:+65287353 | None:intergenic |
| GAGCAGAGAAAGTGTGTGAG+TGG | 0.540683 | 1_4:+65289135 | None:intergenic |
| AGCAGAGAAAGTGTGTGAGT+GGG | 0.553074 | 1_4:+65289136 | None:intergenic |
| CCGCTTAGTCAACAACGTGC+TGG | 0.555117 | 1_4:-65287205 | Msa0177940:exon |
| CAAGAAAAGAGTGTACAGTA+GGG | 0.557860 | 1_4:+65287354 | None:intergenic |
| CAAACCTCGTTTGAGAGAAG+AGG | 0.558779 | 1_4:+65289106 | None:intergenic |
| AAGAAGTCGTGCCGTGAGGA+GGG | 0.581217 | 1_4:-65287264 | Msa0177940:CDS |
| TAAGAAGTCGTGCCGTGAGG+AGG | 0.581437 | 1_4:-65287265 | Msa0177940:CDS |
| AAAACACCACACAACAACAG+TGG | 0.582855 | 1_4:-65289205 | Msa0177940:CDS |
| CCTAGTAACACTGAGATACC+TGG | 0.585674 | 1_4:-65287302 | Msa0177940:CDS |
| AAGAAAAGAGTGTACAGTAG+GGG | 0.587683 | 1_4:+65287355 | None:intergenic |
| TTGTACTATGTCCCTCCTCA+CGG | 0.590509 | 1_4:+65287253 | None:intergenic |
| CTCAGTGTTACTAGGTTGAG+GGG | 0.603718 | 1_4:+65287310 | None:intergenic |
| CCAGCACGTTGTTGACTAAG+CGG | 0.627407 | 1_4:+65287205 | None:intergenic |
| TTGCAGGGGAAGACTGTGAG+AGG | 0.629182 | 1_4:-65287524 | Msa0177940:intron |
| ACTGAGAGATTAACATGGCT+AGG | 0.629973 | 1_4:-65289414 | None:intergenic |
| CTATTGCAAACTGCTTAACA+CGG | 0.633983 | 1_4:-65287394 | Msa0177940:CDS |
| AGAAAAGAGTGTACAGTAGG+GGG | 0.639401 | 1_4:+65287356 | None:intergenic |
| CGACTTCTTACAAGCCGCGG+AGG | 0.642258 | 1_4:+65287278 | None:intergenic |
| ATCGTGAACCAAAAGAACAA+TGG | 0.643285 | 1_4:+65286981 | None:intergenic |
| ACGTGCTGGAGAAAGACTAA+GGG | 0.647434 | 1_4:-65287191 | Msa0177940:three_prime_UTR |
| GCACGACTTCTTACAAGCCG+CGG | 0.650729 | 1_4:+65287275 | None:intergenic |
| ACTGGGCCACTGTTGTTGTG+TGG | 0.664613 | 1_4:+65289199 | None:intergenic |
| GTTTCGAATTCAGATAACGA+AGG | 0.669866 | 1_4:-65287428 | Msa0177940:CDS |
| ATGTCTTGTGTGCCATAGTG+TGG | 0.670039 | 1_4:-65287486 | Msa0177940:CDS |
| TTGTAAGAAGTCGTGCCGTG+AGG | 0.694116 | 1_4:-65287268 | Msa0177940:CDS |
| GATCTCCTGAAAGAGTGTGA+TGG | 0.713714 | 1_4:+65287452 | None:intergenic |
| CTGAGATACCTGGTCCTCCG+CGG | 0.727962 | 1_4:-65287292 | Msa0177940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAAATTTTATTCTTTAG+TGG | - | chr1_4:65287913-65287932 | Msa0177940:intron | 15.0% |
| !!! | TTTTTCTTAGAAGTTAAAAT+TGG | + | chr1_4:65288156-65288175 | None:intergenic | 15.0% |
| !! | TTTATCCATATCGAAAAATT+TGG | - | chr1_4:65287063-65287082 | Msa0177940:three_prime_UTR | 20.0% |
| !!! | TTTTCAATTTCACTGATTTT+GGG | - | chr1_4:65287302-65287321 | Msa0177940:CDS | 20.0% |
| !! | ATCTCATTTATGTTATTCAT+TGG | - | chr1_4:65287334-65287353 | Msa0177940:CDS | 20.0% |
| !! | AGCAATAAGGTAAAATATTA+CGG | + | chr1_4:65287471-65287490 | None:intergenic | 20.0% |
| !!! | AATATTTTACCTTATTGCTA+TGG | - | chr1_4:65287472-65287491 | Msa0177940:CDS | 20.0% |
| !!! | CAATCATTTTGATCTAATTT+TGG | - | chr1_4:65287701-65287720 | Msa0177940:intron | 20.0% |
| !! | TAAAGTATACCATAAGTATA+GGG | + | chr1_4:65288228-65288247 | None:intergenic | 20.0% |
| !!! | GATTATAAGGTTCAAAATTT+TGG | - | chr1_4:65288295-65288314 | Msa0177940:intron | 20.0% |
| !! | TTATAAAGTTACAATGTTTG+AGG | - | chr1_4:65288348-65288367 | Msa0177940:intron | 20.0% |
| !! | GGAAATAACATATAAAGAAT+GGG | + | chr1_4:65288678-65288697 | None:intergenic | 20.0% |
| !!! | AGTAGTTTTTCTCTAATTTT+GGG | - | chr1_4:65289160-65289179 | Msa0177940:CDS | 20.0% |
| !! | TAATATCTAGTTATCTATCA+AGG | - | chr1_4:65289380-65289399 | Msa0177940:intron | 20.0% |
| ! | TTGTCGACAAAAAAAATAGT+AGG | - | chr1_4:65286971-65286990 | Msa0177940:three_prime_UTR | 25.0% |
| !! | ATTTGATAAGATCTTTTACG+AGG | + | chr1_4:65287151-65287170 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACGGAATGAGA+GGG | + | chr1_4:65287238-65287257 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGGAATGAG+AGG | + | chr1_4:65287239-65287258 | None:intergenic | 25.0% |
| ! | ATCAGTGAAATTGAAAAGAA+GGG | + | chr1_4:65287299-65287318 | None:intergenic | 25.0% |
| ! | AATCAGTGAAATTGAAAAGA+AGG | + | chr1_4:65287300-65287319 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTCACTGATTT+TGG | - | chr1_4:65287301-65287320 | Msa0177940:CDS | 25.0% |
| ! | ATGATTTCAAATCTTGCAAT+GGG | - | chr1_4:65287415-65287434 | Msa0177940:CDS | 25.0% |
| ! | AAATTGTTTCCATAGCAATA+AGG | + | chr1_4:65287484-65287503 | None:intergenic | 25.0% |
| !!! | CAATTTCAATTTTCAAGTCA+AGG | - | chr1_4:65287498-65287517 | Msa0177940:CDS | 25.0% |
| !! | TTTTGTGAATGAATACTAAG+TGG | - | chr1_4:65287523-65287542 | Msa0177940:intron | 25.0% |
| ! | TTTGTGAATGAATACTAAGT+GGG | - | chr1_4:65287524-65287543 | Msa0177940:intron | 25.0% |
| ! | ATTATAATCTGCTTGTGTTT+AGG | - | chr1_4:65287634-65287653 | Msa0177940:intron | 25.0% |
| ! | CTTTAGTGGTATATGTAAAA+TGG | - | chr1_4:65287927-65287946 | Msa0177940:intron | 25.0% |
| ! | CTTAGAAGTTAAAATTGGAT+TGG | + | chr1_4:65288151-65288170 | None:intergenic | 25.0% |
| ! | CTAAAGTATACCATAAGTAT+AGG | + | chr1_4:65288229-65288248 | None:intergenic | 25.0% |
| ! | GCTTAACATGAATAATAGAT+AGG | - | chr1_4:65288268-65288287 | Msa0177940:intron | 25.0% |
| ! | ATAGATAGGTAGAGATTATA+AGG | - | chr1_4:65288282-65288301 | Msa0177940:intron | 25.0% |
| ! | TTGTAACTTTATAACCATAC+TGG | + | chr1_4:65288342-65288361 | None:intergenic | 25.0% |
| ! | CTTGGTAAGCTAAAAAAAAA+GGG | + | chr1_4:65288598-65288617 | None:intergenic | 25.0% |
| ! | ACTTGGTAAGCTAAAAAAAA+AGG | + | chr1_4:65288599-65288618 | None:intergenic | 25.0% |
| ! | GGGAAATAACATATAAAGAA+TGG | + | chr1_4:65288679-65288698 | None:intergenic | 25.0% |
| !! | CAGTAGTTTTTCTCTAATTT+TGG | - | chr1_4:65289159-65289178 | Msa0177940:CDS | 25.0% |
| !! | GTAGTTTTTCTCTAATTTTG+GGG | - | chr1_4:65289161-65289180 | Msa0177940:CDS | 25.0% |
| !! | TAGTTTTTCTCTAATTTTGG+GGG | - | chr1_4:65289162-65289181 | Msa0177940:CDS | 25.0% |
| ! | TCTATCAAGGTTAATTATGA+AGG | - | chr1_4:65289393-65289412 | Msa0177940:intron | 25.0% |
| AATAGTAGGTCTTAATCTCA+TGG | - | chr1_4:65286985-65287004 | Msa0177940:three_prime_UTR | 30.0% | |
| ATCCATATCGAAAAATTTGG+AGG | - | chr1_4:65287066-65287085 | Msa0177940:three_prime_UTR | 30.0% | |
| ! | TGCAAGATTTGAAATCATCA+TGG | + | chr1_4:65287413-65287432 | None:intergenic | 30.0% |
| GATGATTTCAAATCTTGCAA+TGG | - | chr1_4:65287414-65287433 | Msa0177940:CDS | 30.0% | |
| TTGTGAATGAATACTAAGTG+GGG | - | chr1_4:65287525-65287544 | Msa0177940:intron | 30.0% | |
| ATGATTGATTATCTAGCATG+CGG | + | chr1_4:65287688-65287707 | None:intergenic | 30.0% | |
| ACAAGGTTAATCATTCTCAA+AGG | + | chr1_4:65287743-65287762 | None:intergenic | 30.0% | |
| AAGAAGCAACATACAAAGTT+TGG | + | chr1_4:65287778-65287797 | None:intergenic | 30.0% | |
| !! | GCTATGCTCTTTAAAGTATT+TGG | - | chr1_4:65288076-65288095 | Msa0177940:intron | 30.0% |
| ! | TTTTTCTGTCCCTATACTTA+TGG | - | chr1_4:65288216-65288235 | Msa0177940:intron | 30.0% |
| ! | ACTTTAGTGTTTGAAACATG+TGG | - | chr1_4:65288242-65288261 | Msa0177940:intron | 30.0% |
| !!! | GGTTCAAAATTTTGGTAATG+TGG | - | chr1_4:65288303-65288322 | Msa0177940:intron | 30.0% |
| TTATAACCATACTGGTGTAT+CGG | + | chr1_4:65288334-65288353 | None:intergenic | 30.0% | |
| CATAAGAAATGAATGAGTTG+TGG | - | chr1_4:65288429-65288448 | Msa0177940:intron | 30.0% | |
| AATGAATGAGTTGTGGTATA+AGG | - | chr1_4:65288436-65288455 | Msa0177940:intron | 30.0% | |
| !!! | TATGTTATTTCCCACACTTT+TGG | - | chr1_4:65288686-65288705 | Msa0177940:intron | 30.0% |
| TAATTTCTGACATGAATTGC+AGG | - | chr1_4:65288775-65288794 | Msa0177940:intron | 30.0% | |
| AATTTCTGACATGAATTGCA+GGG | - | chr1_4:65288776-65288795 | Msa0177940:intron | 30.0% | |
| GTAAGTGAAGTGAGTAACAT+CGG | - | chr1_4:65286938-65286957 | Msa0177940:three_prime_UTR | 35.0% | |
| !! | TGCCTCCAAATTTTTCGATA+TGG | + | chr1_4:65287071-65287090 | None:intergenic | 35.0% |
| TTGAATCAAGATGAAGCAGA+AGG | + | chr1_4:65287270-65287289 | None:intergenic | 35.0% | |
| TGATTGATTATCTAGCATGC+GGG | + | chr1_4:65287687-65287706 | None:intergenic | 35.0% | |
| TTTGGAAGTAAAGTCGAACA+AGG | + | chr1_4:65287760-65287779 | None:intergenic | 35.0% | |
| ACTAATGCAGACACATAGAT+AGG | + | chr1_4:65287828-65287847 | None:intergenic | 35.0% | |
| TTTGTTGCATCTCTTCAAGA+AGG | + | chr1_4:65287898-65287917 | None:intergenic | 35.0% | |
| ! | CTTTGCATGACAGTTTTTAC+AGG | + | chr1_4:65288004-65288023 | None:intergenic | 35.0% |
| TTGATAGAGACGTTAGATGT+AGG | - | chr1_4:65288102-65288121 | Msa0177940:intron | 35.0% | |
| GATTAGATGTCTATTCCCAA+TGG | - | chr1_4:65288396-65288415 | Msa0177940:intron | 35.0% | |
| TTATGACCAGTTTGTCCATT+GGG | + | chr1_4:65288414-65288433 | None:intergenic | 35.0% | |
| ACATATGTCATGTCACTGAA+AGG | - | chr1_4:65288466-65288485 | Msa0177940:intron | 35.0% | |
| CATACAATACACCAATTGGT+GGG | - | chr1_4:65288524-65288543 | Msa0177940:intron | 35.0% | |
| AAATCATTAGCTGTCCAATC+TGG | + | chr1_4:65288714-65288733 | None:intergenic | 35.0% | |
| ATTTCTGACATGAATTGCAG+GGG | - | chr1_4:65288777-65288796 | Msa0177940:intron | 35.0% | |
| GTTTCGAATTCAGATAACGA+AGG | - | chr1_4:65288887-65288906 | Msa0177940:intron | 35.0% | |
| CTATTGCAAACTGCTTAACA+CGG | - | chr1_4:65288921-65288940 | Msa0177940:intron | 35.0% | |
| ! | AAGAAAAGAGTGTACAGTAG+GGG | + | chr1_4:65288963-65288982 | None:intergenic | 35.0% |
| ! | CAAGAAAAGAGTGTACAGTA+GGG | + | chr1_4:65288964-65288983 | None:intergenic | 35.0% |
| AAGAACAATGGCAAAGCAAA+TGG | + | chr1_4:65289325-65289344 | None:intergenic | 35.0% | |
| ! | TTGCTTTGCCATTGTTCTTT+TGG | - | chr1_4:65289326-65289345 | Msa0177940:intron | 35.0% |
| ATCGTGAACCAAAAGAACAA+TGG | + | chr1_4:65289337-65289356 | None:intergenic | 35.0% | |
| AAAACACCACACAACAACAG+TGG | - | chr1_4:65287110-65287129 | Msa0177940:three_prime_UTR | 40.0% | |
| TTACGAGGCAAAAAGCAACT+GGG | + | chr1_4:65287136-65287155 | None:intergenic | 40.0% | |
| TTTACGAGGCAAAAAGCAAC+TGG | + | chr1_4:65287137-65287156 | None:intergenic | 40.0% | |
| !! | CAAATCTTGCAATGGGTTAG+TGG | - | chr1_4:65287422-65287441 | Msa0177940:CDS | 40.0% |
| ! | CTGCTTGTGTTTAGGACTTT+AGG | - | chr1_4:65287642-65287661 | Msa0177940:intron | 40.0% |
| ! | TAGTGTTTGAAACATGTGGC+TGG | - | chr1_4:65288246-65288265 | Msa0177940:intron | 40.0% |
| TCTATTCCCAATGGACAAAC+TGG | - | chr1_4:65288405-65288424 | Msa0177940:intron | 40.0% | |
| CTTATGACCAGTTTGTCCAT+TGG | + | chr1_4:65288415-65288434 | None:intergenic | 40.0% | |
| AGGTTCAAGTCCTAGAAACA+GGG | - | chr1_4:65288493-65288512 | Msa0177940:intron | 40.0% | |
| GCTGCATACAATACACCAAT+TGG | - | chr1_4:65288520-65288539 | Msa0177940:intron | 40.0% | |
| GCATACAATACACCAATTGG+TGG | - | chr1_4:65288523-65288542 | Msa0177940:intron | 40.0% | |
| TTCAACCACCTTGCTTAGAA+GGG | + | chr1_4:65288625-65288644 | None:intergenic | 40.0% | |
| ATTCAACCACCTTGCTTAGA+AGG | + | chr1_4:65288626-65288645 | None:intergenic | 40.0% | |
| ! | GTGACAGATTTTCCACACTA+TGG | + | chr1_4:65288844-65288863 | None:intergenic | 40.0% |
| ! | AGAAAAGAGTGTACAGTAGG+GGG | + | chr1_4:65288962-65288981 | None:intergenic | 40.0% |
| ! | GCAAGAAAAGAGTGTACAGT+AGG | + | chr1_4:65288965-65288984 | None:intergenic | 40.0% |
| ! | TCTCAGTGTTACTAGGTTGA+GGG | + | chr1_4:65289009-65289028 | None:intergenic | 40.0% |
| ! | ATCTCAGTGTTACTAGGTTG+AGG | + | chr1_4:65289010-65289029 | None:intergenic | 40.0% |
| !!! | CACGATAGATTTTTTCGTCG+AGG | - | chr1_4:65289351-65289370 | Msa0177940:intron | 40.0% |
| !!! | GATAGATTTTTTCGTCGAGG+AGG | - | chr1_4:65289354-65289373 | Msa0177940:intron | 40.0% |
| ! | AGCAGAGAAAGTGTGTGAGT+GGG | + | chr1_4:65287182-65287201 | None:intergenic | 45.0% |
| CAAACCTCGTTTGAGAGAAG+AGG | + | chr1_4:65287212-65287231 | None:intergenic | 45.0% | |
| GCATTTCCGATACACCAGTA+TGG | - | chr1_4:65288325-65288344 | Msa0177940:intron | 45.0% | |
| TCATGTCACTGAAAGGTCAC+AGG | - | chr1_4:65288473-65288492 | Msa0177940:intron | 45.0% | |
| CAGGTTCAAGTCCTAGAAAC+AGG | - | chr1_4:65288492-65288511 | Msa0177940:intron | 45.0% | |
| CAAGTCCTAGAAACAGGGTA+AGG | - | chr1_4:65288498-65288517 | Msa0177940:intron | 45.0% | |
| TTAAAGCTCCCGTATACGCA+GGG | + | chr1_4:65288563-65288582 | None:intergenic | 45.0% | |
| ATTAAAGCTCCCGTATACGC+AGG | + | chr1_4:65288564-65288583 | None:intergenic | 45.0% | |
| ! | ATACGGGAGCTTTAATGCAC+CGG | - | chr1_4:65288568-65288587 | Msa0177940:intron | 45.0% |
| GCTAAAAAAAAAGGGCAGCC+CGG | + | chr1_4:65288590-65288609 | None:intergenic | 45.0% | |
| CTTGCTTAGAAGGGTCAACT+TGG | + | chr1_4:65288616-65288635 | None:intergenic | 45.0% | |
| ! | CAAGTTGACCCTTCTAAGCA+AGG | - | chr1_4:65288614-65288633 | Msa0177940:intron | 45.0% |
| ! | CAATCTGGCACCAAAAGTGT+GGG | + | chr1_4:65288699-65288718 | None:intergenic | 45.0% |
| ATGTCTTGTGTGCCATAGTG+TGG | - | chr1_4:65288829-65288848 | Msa0177940:intron | 45.0% | |
| TGTCACCATCACACTCTTTC+AGG | - | chr1_4:65288858-65288877 | Msa0177940:intron | 45.0% | |
| ! | GATCTCCTGAAAGAGTGTGA+TGG | + | chr1_4:65288866-65288885 | None:intergenic | 45.0% |
| ! | ACTAGGTTGAGGGGTAACTT+TGG | + | chr1_4:65288999-65289018 | None:intergenic | 45.0% |
| ! | CTCAGTGTTACTAGGTTGAG+GGG | + | chr1_4:65289008-65289027 | None:intergenic | 45.0% |
| ! | CCAGGTATCTCAGTGTTACT+AGG | + | chr1_4:65289016-65289035 | None:intergenic | 45.0% |
| CCTAGTAACACTGAGATACC+TGG | - | chr1_4:65289013-65289032 | Msa0177940:intron | 45.0% | |
| TTGTACTATGTCCCTCCTCA+CGG | + | chr1_4:65289065-65289084 | None:intergenic | 45.0% | |
| GGAGGGACATAGTACAAGAT+TGG | - | chr1_4:65289068-65289087 | Msa0177940:intron | 45.0% | |
| AACGTGCTGGAGAAAGACTA+AGG | - | chr1_4:65289123-65289142 | Msa0177940:CDS | 45.0% | |
| ACGTGCTGGAGAAAGACTAA+GGG | - | chr1_4:65289124-65289143 | Msa0177940:CDS | 45.0% | |
| !! | GAAAAAAAAAAAAAAAAAAA+CGG | + | chr1_4:65287248-65287267 | None:intergenic | 5.0% |
| ! | GAGCAGAGAAAGTGTGTGAG+TGG | + | chr1_4:65287183-65287202 | None:intergenic | 50.0% |
| CTCTCCTCTTCTCTCAAACG+AGG | - | chr1_4:65287205-65287224 | Msa0177940:exon | 50.0% | |
| ! | TGCAGCCTTACCCTGTTTCT+AGG | + | chr1_4:65288506-65288525 | None:intergenic | 50.0% |
| ! | TACGGGAGCTTTAATGCACC+GGG | - | chr1_4:65288569-65288588 | Msa0177940:intron | 50.0% |
| GTTGACCCTTCTAAGCAAGG+TGG | - | chr1_4:65288617-65288636 | Msa0177940:intron | 50.0% | |
| CCAATCTGGCACCAAAAGTG+TGG | + | chr1_4:65288700-65288719 | None:intergenic | 50.0% | |
| !!! | CCACACTTTTGGTGCCAGAT+TGG | - | chr1_4:65288697-65288716 | Msa0177940:intron | 50.0% |
| TTGTAAGAAGTCGTGCCGTG+AGG | - | chr1_4:65289047-65289066 | Msa0177940:intron | 50.0% | |
| ! | CCAGCACGTTGTTGACTAAG+CGG | + | chr1_4:65289113-65289132 | None:intergenic | 50.0% |
| ACTGGGCCACTGTTGTTGTG+TGG | + | chr1_4:65287119-65287138 | None:intergenic | 55.0% | |
| TTGCAGGGGAAGACTGTGAG+AGG | - | chr1_4:65288791-65288810 | Msa0177940:intron | 55.0% | |
| GCACGACTTCTTACAAGCCG+CGG | + | chr1_4:65289043-65289062 | None:intergenic | 55.0% | |
| TAAGAAGTCGTGCCGTGAGG+AGG | - | chr1_4:65289050-65289069 | Msa0177940:intron | 55.0% | |
| AAGAAGTCGTGCCGTGAGGA+GGG | - | chr1_4:65289051-65289070 | Msa0177940:intron | 55.0% | |
| CCGCTTAGTCAACAACGTGC+TGG | - | chr1_4:65289110-65289129 | Msa0177940:intron | 55.0% | |
| CAATTGGTGGGACCCCTTCC+CGG | - | chr1_4:65288536-65288555 | Msa0177940:intron | 60.0% | |
| TATACGCAGGGTCCGGGAAG+GGG | + | chr1_4:65288551-65288570 | None:intergenic | 60.0% | |
| GTATACGCAGGGTCCGGGAA+GGG | + | chr1_4:65288552-65288571 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCGTATA+CGG | - | chr1_4:65288551-65288570 | Msa0177940:intron | 60.0% | |
| TTCCCGGACCCTGCGTATAC+GGG | - | chr1_4:65288552-65288571 | Msa0177940:intron | 60.0% | |
| CTGAGATACCTGGTCCTCCG+CGG | - | chr1_4:65289023-65289042 | Msa0177940:intron | 60.0% | |
| CGACTTCTTACAAGCCGCGG+AGG | + | chr1_4:65289040-65289059 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCAAT+TGG | + | chr1_4:65288538-65288557 | None:intergenic | 65.0% | |
| CGTATACGCAGGGTCCGGGA+AGG | + | chr1_4:65288553-65288572 | None:intergenic | 65.0% | |
| CTCCCGTATACGCAGGGTCC+GGG | + | chr1_4:65288557-65288576 | None:intergenic | 65.0% | |
| GCTCCCGTATACGCAGGGTC+CGG | + | chr1_4:65288558-65288577 | None:intergenic | 65.0% | |
| CTTACAAGCCGCGGAGGACC+AGG | + | chr1_4:65289034-65289053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 65286915 | 65289422 | 65286915 | ID=Msa0177940;Name=Msa0177940 |
| chr1_4 | mRNA | 65286915 | 65289422 | 65286915 | ID=Msa0177940-mRNA-1;Parent=Msa0177940;Name=Msa0177940-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.5|0.33|0.66|1|1|3|305|155 |
| chr1_4 | exon | 65286915 | 65287540 | 65286915 | ID=Msa0177940-mRNA-1:exon:21260;Parent=Msa0177940-mRNA-1 |
| chr1_4 | exon | 65289111 | 65289249 | 65289111 | ID=Msa0177940-mRNA-1:exon:21259;Parent=Msa0177940-mRNA-1 |
| chr1_4 | exon | 65289415 | 65289422 | 65289415 | ID=Msa0177940-mRNA-1:exon:21258;Parent=Msa0177940-mRNA-1 |
| chr1_4 | CDS | 65289415 | 65289422 | 65289415 | ID=Msa0177940-mRNA-1:cds;Parent=Msa0177940-mRNA-1 |
| chr1_4 | CDS | 65289111 | 65289249 | 65289111 | ID=Msa0177940-mRNA-1:cds;Parent=Msa0177940-mRNA-1 |
| chr1_4 | CDS | 65287220 | 65287540 | 65287220 | ID=Msa0177940-mRNA-1:cds;Parent=Msa0177940-mRNA-1 |
| chr1_4 | three_prime_UTR | 65286915 | 65287219 | 65286915 | ID=Msa0177940-mRNA-1:three_prime_utr;Parent=Msa0177940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
