Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037230 | KEH43591.1 | 87.081 | 209 | 12 | 2 | 8 | 201 | 32 | 240 | 1.24e-122 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037230 | Msa0071640 | 0.831977 | 1.229102e-55 | -8.615850e-47 |
| Msa0037230 | Msa0072570 | 0.813914 | 2.010915e-51 | -8.615850e-47 |
| Msa0037230 | Msa0085020 | 0.955900 | 1.040019e-113 | -8.615850e-47 |
| Msa0037230 | Msa0089540 | 0.800725 | 1.259577e-48 | -8.615850e-47 |
| Msa0037230 | Msa0167860 | 0.813134 | 2.984324e-51 | -8.615850e-47 |
| Msa0037230 | Msa0168320 | 0.802336 | 5.888769e-49 | -8.615850e-47 |
| Msa0037230 | Msa0169710 | 0.801808 | 7.560195e-49 | -8.615850e-47 |
| Msa0037230 | Msa0177940 | 0.930333 | 1.907659e-93 | -8.615850e-47 |
| Msa0037230 | Msa0183840 | 0.800828 | 1.199902e-48 | -8.615850e-47 |
| Msa0037230 | Msa0195030 | 0.860809 | 1.594689e-63 | -8.615850e-47 |
| Msa0037230 | Msa0225370 | -0.806298 | 8.804618e-50 | -8.615850e-47 |
| Msa0037230 | Msa0237180 | 0.859219 | 4.811385e-63 | -8.615850e-47 |
| Msa0037230 | Msa0266380 | -0.848896 | 4.576371e-60 | -8.615850e-47 |
| Msa0037230 | Msa0274940 | 0.849227 | 3.702996e-60 | -8.615850e-47 |
| Msa0037230 | Msa0281370 | 0.823647 | 1.237580e-53 | -8.615850e-47 |
| Msa0037230 | Msa0313060 | 0.807031 | 6.164594e-50 | -8.615850e-47 |
| Msa0037230 | Msa0315660 | 0.860548 | 1.913145e-63 | -8.615850e-47 |
| Msa0037230 | Msa0341860 | -0.848076 | 7.719093e-60 | -8.615850e-47 |
| Msa0037230 | Msa0371490 | 0.809666 | 1.690553e-50 | -8.615850e-47 |
| Msa0037230 | Msa0377520 | 0.825891 | 3.659573e-54 | -8.615850e-47 |
| Msa0037230 | Msa0378620 | -0.853377 | 2.488625e-61 | -8.615850e-47 |
| Msa0037230 | Msa0382670 | 0.823385 | 1.425106e-53 | -8.615850e-47 |
| Msa0037230 | Msa0388520 | 0.801021 | 1.095928e-48 | -8.615850e-47 |
| Msa0037230 | Msa0416470 | 0.826409 | 2.756204e-54 | -8.615850e-47 |
| Msa0037230 | Msa0432260 | -0.829098 | 6.224665e-55 | -8.615850e-47 |
| Msa0037230 | Msa0476730 | -0.832136 | 1.122968e-55 | -8.615850e-47 |
| Msa0037230 | Msa0511760 | 0.808195 | 3.489854e-50 | -8.615850e-47 |
| Msa0037230 | Msa0517480 | 0.805336 | 1.402358e-49 | -8.615850e-47 |
| Msa0037230 | Msa0521100 | -0.817773 | 2.771288e-52 | -8.615850e-47 |
| Msa0037230 | Msa0526490 | -0.810770 | 9.769408e-51 | -8.615850e-47 |
| Msa0037230 | Msa0573550 | 0.820555 | 6.447455e-53 | -8.615850e-47 |
| Msa0037230 | Msa0609120 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0037230 | Msa0619230 | 0.814820 | 1.268317e-51 | -8.615850e-47 |
| Msa0037230 | Msa0646180 | -0.808564 | 2.911007e-50 | -8.615850e-47 |
| Msa0037230 | Msa0691760 | 0.804088 | 2.555231e-49 | -8.615850e-47 |
| Msa0037230 | Msa0790450 | 0.807074 | 6.037289e-50 | -8.615850e-47 |
| Msa0037230 | Msa0929700 | 0.835632 | 1.498677e-56 | -8.615850e-47 |
| Msa0037230 | Msa1152860 | 0.808012 | 3.816762e-50 | -8.615850e-47 |
| Msa0037230 | Msa1156830 | 0.830496 | 2.842363e-55 | -8.615850e-47 |
| Msa0037230 | Msa1163320 | 0.819233 | 1.293509e-52 | -8.615850e-47 |
| Msa0037230 | Msa1235950 | 0.806694 | 7.265388e-50 | -8.615850e-47 |
| Msa0037230 | Msa1235980 | 0.808780 | 2.617073e-50 | -8.615850e-47 |
| Msa0037230 | Msa1359880 | -0.800461 | 1.425985e-48 | -8.615850e-47 |
| Msa0037230 | Msa1389340 | 0.952566 | 1.836209e-110 | -8.615850e-47 |
| Msa0037230 | Msa1390760 | 0.817376 | 3.404916e-52 | -8.615850e-47 |
| Msa0037230 | Msa1432310 | 0.800904 | 1.158015e-48 | -8.615850e-47 |
| Msa0037230 | Msa1441220 | -0.800526 | 1.382947e-48 | -8.615850e-47 |
| Msa0037230 | Msa1446510 | 0.813527 | 2.446403e-51 | -8.615850e-47 |
| Msa0037230 | Msa1450560 | 0.806131 | 9.549024e-50 | -8.615850e-47 |
| Msa0037230 | Msa1465700 | 0.817768 | 2.778552e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037230 | MtrunA17_Chr1g0200861 | 70.792 | 202 | 8 | 3 | 8 | 201 | 32 | 190 | 8.50e-92 | 266 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0037230 | AT1G71865.1 | 65.306 | 98 | 29 | 4 | 103 | 198 | 1 | 95 | 4.40e-28 | 102 |
Find 48 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTATAAGGTTCAAAATTT+TGG | 0.124660 | 1_1:-66193251 | Msa0037230:CDS |
| TTGCTTTGCCATTGTTCTTT+TGG | 0.201399 | 1_1:-66192220 | Msa0037230:three_prime_UTR |
| TGTCACCATCACACTCTTTC+AGG | 0.206894 | 1_1:-66192688 | Msa0037230:CDS |
| ATAGATAGGTAGAGATTATA+AGG | 0.301627 | 1_1:-66193264 | Msa0037230:intron |
| TTGTAACTTTATAACCATAC+TGG | 0.412519 | 1_1:+66193207 | None:intergenic |
| GCATTTCCGATACACCAGTA+TGG | 0.430298 | 1_1:-66193221 | Msa0037230:CDS |
| TCTATCAAGGTTAATTATGA+AGG | 0.433912 | 1_1:-66192153 | Msa0037230:three_prime_UTR |
| AAGAACAATGGCAAAGCAAA+TGG | 0.453315 | 1_1:+66192224 | None:intergenic |
| CCAGGTATCTCAGTGTTACT+AGG | 0.459360 | 1_1:+66192533 | None:intergenic |
| ATCTCAGTGTTACTAGGTTG+AGG | 0.466517 | 1_1:+66192539 | None:intergenic |
| TTATAAAGTTACAATGTTTG+AGG | 0.479171 | 1_1:-66193198 | Msa0037230:intron |
| TAATATCTAGTTATCTATCA+AGG | 0.483873 | 1_1:-66192166 | Msa0037230:three_prime_UTR |
| GGAGGGACATAGTACAAGAT+TGG | 0.483942 | 1_1:-66192478 | Msa0037230:CDS |
| TTTGTTGCATCTCTTCAAGA+AGG | 0.507747 | 1_1:+66193651 | None:intergenic |
| AACGTGCTGGAGAAAGACTA+AGG | 0.512886 | 1_1:-66192423 | Msa0037230:three_prime_UTR |
| CTCTCCTCTTCTCTCAAACG+AGG | 0.513321 | 1_1:-66194341 | Msa0037230:intron |
| TCTCAGTGTTACTAGGTTGA+GGG | 0.523772 | 1_1:+66192540 | None:intergenic |
| ACTAGGTTGAGGGGTAACTT+TGG | 0.527701 | 1_1:+66192550 | None:intergenic |
| CTTACAAGCCGCGGAGGACC+AGG | 0.527990 | 1_1:+66192515 | None:intergenic |
| GCAAGAAAAGAGTGTACAGT+AGG | 0.530811 | 1_1:+66192584 | None:intergenic |
| TTATAACCATACTGGTGTAT+CGG | 0.531699 | 1_1:+66193215 | None:intergenic |
| GAGCAGAGAAAGTGTGTGAG+TGG | 0.540683 | 1_1:+66194366 | None:intergenic |
| AGCAGAGAAAGTGTGTGAGT+GGG | 0.553074 | 1_1:+66194367 | None:intergenic |
| CCGCTTAGTCAACAACGTGC+TGG | 0.555117 | 1_1:-66192436 | Msa0037230:exon |
| CAAGAAAAGAGTGTACAGTA+GGG | 0.557860 | 1_1:+66192585 | None:intergenic |
| CAAACCTCGTTTGAGAGAAG+AGG | 0.558779 | 1_1:+66194337 | None:intergenic |
| AAGAAGTCGTGCCGTGAGGA+GGG | 0.581217 | 1_1:-66192495 | Msa0037230:CDS |
| TAAGAAGTCGTGCCGTGAGG+AGG | 0.581437 | 1_1:-66192496 | Msa0037230:CDS |
| AAAACACCACACAACAACAG+TGG | 0.582855 | 1_1:-66194436 | Msa0037230:CDS |
| CCTAGTAACACTGAGATACC+TGG | 0.585674 | 1_1:-66192533 | Msa0037230:CDS |
| AAGAAAAGAGTGTACAGTAG+GGG | 0.587683 | 1_1:+66192586 | None:intergenic |
| TTGTACTATGTCCCTCCTCA+CGG | 0.590509 | 1_1:+66192484 | None:intergenic |
| CTCAGTGTTACTAGGTTGAG+GGG | 0.603718 | 1_1:+66192541 | None:intergenic |
| CCAGCACGTTGTTGACTAAG+CGG | 0.627407 | 1_1:+66192436 | None:intergenic |
| TTGCAGGGGAAGACTGTGAG+AGG | 0.629182 | 1_1:-66192755 | Msa0037230:intron |
| ACTGAGAGATTAACATGGCT+AGG | 0.629973 | 1_1:-66194646 | None:intergenic |
| CTATTGCAAACTGCTTAACA+CGG | 0.633983 | 1_1:-66192625 | Msa0037230:CDS |
| AGAAAAGAGTGTACAGTAGG+GGG | 0.639401 | 1_1:+66192587 | None:intergenic |
| CGACTTCTTACAAGCCGCGG+AGG | 0.642258 | 1_1:+66192509 | None:intergenic |
| ATCGTGAACCAAAAGAACAA+TGG | 0.643285 | 1_1:+66192212 | None:intergenic |
| ACGTGCTGGAGAAAGACTAA+GGG | 0.647434 | 1_1:-66192422 | Msa0037230:three_prime_UTR |
| GCACGACTTCTTACAAGCCG+CGG | 0.650729 | 1_1:+66192506 | None:intergenic |
| ACTGGGCCACTGTTGTTGTG+TGG | 0.664613 | 1_1:+66194430 | None:intergenic |
| GTTTCGAATTCAGATAACGA+AGG | 0.669866 | 1_1:-66192659 | Msa0037230:CDS |
| ATGTCTTGTGTGCCATAGTG+TGG | 0.670039 | 1_1:-66192717 | Msa0037230:CDS |
| TTGTAAGAAGTCGTGCCGTG+AGG | 0.694116 | 1_1:-66192499 | Msa0037230:CDS |
| GATCTCCTGAAAGAGTGTGA+TGG | 0.713714 | 1_1:+66192683 | None:intergenic |
| CTGAGATACCTGGTCCTCCG+CGG | 0.727962 | 1_1:-66192523 | Msa0037230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAAAATTTTATTCTTTAG+TGG | - | chr1_1:66193145-66193164 | Msa0037230:intron | 15.0% |
| !!! | TTTTTCTTAGAAGTTAAAAT+TGG | + | chr1_1:66193388-66193407 | None:intergenic | 15.0% |
| !! | TTTATCCATATCGAAAAATT+TGG | - | chr1_1:66192295-66192314 | Msa0037230:three_prime_UTR | 20.0% |
| !!! | TTTTCAATTTCACTGATTTT+GGG | - | chr1_1:66192534-66192553 | Msa0037230:CDS | 20.0% |
| !! | ATCTCATTTATGTTATTCAT+TGG | - | chr1_1:66192566-66192585 | Msa0037230:CDS | 20.0% |
| !! | AGCAATAAGGTAAAATATTA+CGG | + | chr1_1:66192703-66192722 | None:intergenic | 20.0% |
| !!! | AATATTTTACCTTATTGCTA+TGG | - | chr1_1:66192704-66192723 | Msa0037230:CDS | 20.0% |
| !!! | CAATCATTTTGATCTAATTT+TGG | - | chr1_1:66192933-66192952 | Msa0037230:intron | 20.0% |
| !! | TAAAGTATACCATAAGTATA+GGG | + | chr1_1:66193460-66193479 | None:intergenic | 20.0% |
| !!! | GATTATAAGGTTCAAAATTT+TGG | - | chr1_1:66193527-66193546 | Msa0037230:intron | 20.0% |
| !! | TTATAAAGTTACAATGTTTG+AGG | - | chr1_1:66193580-66193599 | Msa0037230:intron | 20.0% |
| !! | GGAAATAACATATAAAGAAT+GGG | + | chr1_1:66193910-66193929 | None:intergenic | 20.0% |
| !!! | AGTAGTTTTTCTCTAATTTT+GGG | - | chr1_1:66194392-66194411 | Msa0037230:CDS | 20.0% |
| !! | TAATATCTAGTTATCTATCA+AGG | - | chr1_1:66194612-66194631 | Msa0037230:intron | 20.0% |
| ! | TGTCGACAAAAAAAAATAGT+AGG | - | chr1_1:66192203-66192222 | Msa0037230:three_prime_UTR | 25.0% |
| !! | ATTTGATAAGATCTTTTACG+AGG | + | chr1_1:66192383-66192402 | None:intergenic | 25.0% |
| ! | AAAAAAAAAACGGAATGAGA+GGG | + | chr1_1:66192470-66192489 | None:intergenic | 25.0% |
| ! | AAAAAAAAAAACGGAATGAG+AGG | + | chr1_1:66192471-66192490 | None:intergenic | 25.0% |
| ! | ATCAGTGAAATTGAAAAGAA+GGG | + | chr1_1:66192531-66192550 | None:intergenic | 25.0% |
| ! | AATCAGTGAAATTGAAAAGA+AGG | + | chr1_1:66192532-66192551 | None:intergenic | 25.0% |
| !!! | CTTTTCAATTTCACTGATTT+TGG | - | chr1_1:66192533-66192552 | Msa0037230:CDS | 25.0% |
| ! | ATGATTTCAAATCTTGCAAT+GGG | - | chr1_1:66192647-66192666 | Msa0037230:CDS | 25.0% |
| ! | AAATTGTTTCCATAGCAATA+AGG | + | chr1_1:66192716-66192735 | None:intergenic | 25.0% |
| !!! | CAATTTCAATTTTCAAGTCA+AGG | - | chr1_1:66192730-66192749 | Msa0037230:CDS | 25.0% |
| !! | TTTTGTGAATGAATACTAAG+TGG | - | chr1_1:66192755-66192774 | Msa0037230:intron | 25.0% |
| ! | TTTGTGAATGAATACTAAGT+GGG | - | chr1_1:66192756-66192775 | Msa0037230:intron | 25.0% |
| ! | ATTATAATCTGCTTGTGTTT+AGG | - | chr1_1:66192866-66192885 | Msa0037230:intron | 25.0% |
| ! | CTTTAGTGGTATATGTAAAA+TGG | - | chr1_1:66193159-66193178 | Msa0037230:intron | 25.0% |
| ! | CTTAGAAGTTAAAATTGGAT+TGG | + | chr1_1:66193383-66193402 | None:intergenic | 25.0% |
| ! | CTAAAGTATACCATAAGTAT+AGG | + | chr1_1:66193461-66193480 | None:intergenic | 25.0% |
| ! | GCTTAACATGAATAATAGAT+AGG | - | chr1_1:66193500-66193519 | Msa0037230:intron | 25.0% |
| ! | ATAGATAGGTAGAGATTATA+AGG | - | chr1_1:66193514-66193533 | Msa0037230:intron | 25.0% |
| ! | TTGTAACTTTATAACCATAC+TGG | + | chr1_1:66193574-66193593 | None:intergenic | 25.0% |
| ! | CTTGGTAAGCTAAAAAAAAA+GGG | + | chr1_1:66193830-66193849 | None:intergenic | 25.0% |
| ! | ACTTGGTAAGCTAAAAAAAA+AGG | + | chr1_1:66193831-66193850 | None:intergenic | 25.0% |
| ! | GGGAAATAACATATAAAGAA+TGG | + | chr1_1:66193911-66193930 | None:intergenic | 25.0% |
| !! | CAGTAGTTTTTCTCTAATTT+TGG | - | chr1_1:66194391-66194410 | Msa0037230:CDS | 25.0% |
| !! | GTAGTTTTTCTCTAATTTTG+GGG | - | chr1_1:66194393-66194412 | Msa0037230:CDS | 25.0% |
| !! | TAGTTTTTCTCTAATTTTGG+GGG | - | chr1_1:66194394-66194413 | Msa0037230:CDS | 25.0% |
| ! | TCTATCAAGGTTAATTATGA+AGG | - | chr1_1:66194625-66194644 | Msa0037230:intron | 25.0% |
| AATAGTAGGTCTTAATCTCA+TGG | - | chr1_1:66192217-66192236 | Msa0037230:three_prime_UTR | 30.0% | |
| ATCCATATCGAAAAATTTGG+AGG | - | chr1_1:66192298-66192317 | Msa0037230:three_prime_UTR | 30.0% | |
| ! | TGCAAGATTTGAAATCATCA+TGG | + | chr1_1:66192645-66192664 | None:intergenic | 30.0% |
| GATGATTTCAAATCTTGCAA+TGG | - | chr1_1:66192646-66192665 | Msa0037230:CDS | 30.0% | |
| TTGTGAATGAATACTAAGTG+GGG | - | chr1_1:66192757-66192776 | Msa0037230:intron | 30.0% | |
| ATGATTGATTATCTAGCATG+CGG | + | chr1_1:66192920-66192939 | None:intergenic | 30.0% | |
| ACAAGGTTAATCATTCTCAA+AGG | + | chr1_1:66192975-66192994 | None:intergenic | 30.0% | |
| AAGAAGCAACATACAAAGTT+TGG | + | chr1_1:66193010-66193029 | None:intergenic | 30.0% | |
| !! | GCTATGCTCTTTAAAGTATT+TGG | - | chr1_1:66193308-66193327 | Msa0037230:intron | 30.0% |
| ! | TTTTTCTGTCCCTATACTTA+TGG | - | chr1_1:66193448-66193467 | Msa0037230:intron | 30.0% |
| ! | ACTTTAGTGTTTGAAACATG+TGG | - | chr1_1:66193474-66193493 | Msa0037230:intron | 30.0% |
| !!! | GGTTCAAAATTTTGGTAATG+TGG | - | chr1_1:66193535-66193554 | Msa0037230:intron | 30.0% |
| TTATAACCATACTGGTGTAT+CGG | + | chr1_1:66193566-66193585 | None:intergenic | 30.0% | |
| CATAAGAAATGAATGAGTTG+TGG | - | chr1_1:66193661-66193680 | Msa0037230:CDS | 30.0% | |
| AATGAATGAGTTGTGGTATA+AGG | - | chr1_1:66193668-66193687 | Msa0037230:CDS | 30.0% | |
| !!! | TATGTTATTTCCCACACTTT+TGG | - | chr1_1:66193918-66193937 | Msa0037230:intron | 30.0% |
| TAATTTCTGACATGAATTGC+AGG | - | chr1_1:66194007-66194026 | Msa0037230:intron | 30.0% | |
| AATTTCTGACATGAATTGCA+GGG | - | chr1_1:66194008-66194027 | Msa0037230:intron | 30.0% | |
| GTAAGTGAAGTGAGTAACAT+CGG | - | chr1_1:66192169-66192188 | Msa0037230:three_prime_UTR | 35.0% | |
| !! | TGCCTCCAAATTTTTCGATA+TGG | + | chr1_1:66192303-66192322 | None:intergenic | 35.0% |
| TTGAATCAAGATGAAGCAGA+AGG | + | chr1_1:66192502-66192521 | None:intergenic | 35.0% | |
| TGATTGATTATCTAGCATGC+GGG | + | chr1_1:66192919-66192938 | None:intergenic | 35.0% | |
| TTTGGAAGTAAAGTCGAACA+AGG | + | chr1_1:66192992-66193011 | None:intergenic | 35.0% | |
| ACTAATGCAGACACATAGAT+AGG | + | chr1_1:66193060-66193079 | None:intergenic | 35.0% | |
| TTTGTTGCATCTCTTCAAGA+AGG | + | chr1_1:66193130-66193149 | None:intergenic | 35.0% | |
| ! | CTTTGCATGACAGTTTTTAC+AGG | + | chr1_1:66193236-66193255 | None:intergenic | 35.0% |
| TTGATAGAGACGTTAGATGT+AGG | - | chr1_1:66193334-66193353 | Msa0037230:intron | 35.0% | |
| GATTAGATGTCTATTCCCAA+TGG | - | chr1_1:66193628-66193647 | Msa0037230:intron | 35.0% | |
| TTATGACCAGTTTGTCCATT+GGG | + | chr1_1:66193646-66193665 | None:intergenic | 35.0% | |
| ACATATGTCATGTCACTGAA+AGG | - | chr1_1:66193698-66193717 | Msa0037230:intron | 35.0% | |
| CATACAATACACCAATTGGT+GGG | - | chr1_1:66193756-66193775 | Msa0037230:intron | 35.0% | |
| AAATCATTAGCTGTCCAATC+TGG | + | chr1_1:66193946-66193965 | None:intergenic | 35.0% | |
| ATTTCTGACATGAATTGCAG+GGG | - | chr1_1:66194009-66194028 | Msa0037230:intron | 35.0% | |
| GTTTCGAATTCAGATAACGA+AGG | - | chr1_1:66194119-66194138 | Msa0037230:intron | 35.0% | |
| CTATTGCAAACTGCTTAACA+CGG | - | chr1_1:66194153-66194172 | Msa0037230:intron | 35.0% | |
| ! | AAGAAAAGAGTGTACAGTAG+GGG | + | chr1_1:66194195-66194214 | None:intergenic | 35.0% |
| ! | CAAGAAAAGAGTGTACAGTA+GGG | + | chr1_1:66194196-66194215 | None:intergenic | 35.0% |
| AAGAACAATGGCAAAGCAAA+TGG | + | chr1_1:66194557-66194576 | None:intergenic | 35.0% | |
| ! | TTGCTTTGCCATTGTTCTTT+TGG | - | chr1_1:66194558-66194577 | Msa0037230:intron | 35.0% |
| ATCGTGAACCAAAAGAACAA+TGG | + | chr1_1:66194569-66194588 | None:intergenic | 35.0% | |
| AAAACACCACACAACAACAG+TGG | - | chr1_1:66192342-66192361 | Msa0037230:three_prime_UTR | 40.0% | |
| TTACGAGGCAAAAAGCAACT+GGG | + | chr1_1:66192368-66192387 | None:intergenic | 40.0% | |
| TTTACGAGGCAAAAAGCAAC+TGG | + | chr1_1:66192369-66192388 | None:intergenic | 40.0% | |
| !! | CAAATCTTGCAATGGGTTAG+TGG | - | chr1_1:66192654-66192673 | Msa0037230:CDS | 40.0% |
| ! | CTGCTTGTGTTTAGGACTTT+AGG | - | chr1_1:66192874-66192893 | Msa0037230:intron | 40.0% |
| ! | TAGTGTTTGAAACATGTGGC+TGG | - | chr1_1:66193478-66193497 | Msa0037230:intron | 40.0% |
| TCTATTCCCAATGGACAAAC+TGG | - | chr1_1:66193637-66193656 | Msa0037230:CDS | 40.0% | |
| CTTATGACCAGTTTGTCCAT+TGG | + | chr1_1:66193647-66193666 | None:intergenic | 40.0% | |
| AGGTTCAAGTCCTAGAAACA+GGG | - | chr1_1:66193725-66193744 | Msa0037230:intron | 40.0% | |
| GCTGCATACAATACACCAAT+TGG | - | chr1_1:66193752-66193771 | Msa0037230:intron | 40.0% | |
| GCATACAATACACCAATTGG+TGG | - | chr1_1:66193755-66193774 | Msa0037230:intron | 40.0% | |
| TTCAACCACCTTGCTTAGAA+GGG | + | chr1_1:66193857-66193876 | None:intergenic | 40.0% | |
| ATTCAACCACCTTGCTTAGA+AGG | + | chr1_1:66193858-66193877 | None:intergenic | 40.0% | |
| ! | GTGACAGATTTTCCACACTA+TGG | + | chr1_1:66194076-66194095 | None:intergenic | 40.0% |
| ! | AGAAAAGAGTGTACAGTAGG+GGG | + | chr1_1:66194194-66194213 | None:intergenic | 40.0% |
| ! | GCAAGAAAAGAGTGTACAGT+AGG | + | chr1_1:66194197-66194216 | None:intergenic | 40.0% |
| ! | TCTCAGTGTTACTAGGTTGA+GGG | + | chr1_1:66194241-66194260 | None:intergenic | 40.0% |
| ! | ATCTCAGTGTTACTAGGTTG+AGG | + | chr1_1:66194242-66194261 | None:intergenic | 40.0% |
| !!! | CACGATAGATTTTTTCGTCG+AGG | - | chr1_1:66194583-66194602 | Msa0037230:intron | 40.0% |
| !!! | GATAGATTTTTTCGTCGAGG+AGG | - | chr1_1:66194586-66194605 | Msa0037230:intron | 40.0% |
| ! | AGCAGAGAAAGTGTGTGAGT+GGG | + | chr1_1:66192414-66192433 | None:intergenic | 45.0% |
| CAAACCTCGTTTGAGAGAAG+AGG | + | chr1_1:66192444-66192463 | None:intergenic | 45.0% | |
| GCATTTCCGATACACCAGTA+TGG | - | chr1_1:66193557-66193576 | Msa0037230:intron | 45.0% | |
| TCATGTCACTGAAAGGTCAC+AGG | - | chr1_1:66193705-66193724 | Msa0037230:intron | 45.0% | |
| CAGGTTCAAGTCCTAGAAAC+AGG | - | chr1_1:66193724-66193743 | Msa0037230:intron | 45.0% | |
| CAAGTCCTAGAAACAGGGTA+AGG | - | chr1_1:66193730-66193749 | Msa0037230:intron | 45.0% | |
| TTAAAGCTCCCGTATACGCA+GGG | + | chr1_1:66193795-66193814 | None:intergenic | 45.0% | |
| ATTAAAGCTCCCGTATACGC+AGG | + | chr1_1:66193796-66193815 | None:intergenic | 45.0% | |
| ! | ATACGGGAGCTTTAATGCAC+CGG | - | chr1_1:66193800-66193819 | Msa0037230:intron | 45.0% |
| GCTAAAAAAAAAGGGCAGCC+CGG | + | chr1_1:66193822-66193841 | None:intergenic | 45.0% | |
| CTTGCTTAGAAGGGTCAACT+TGG | + | chr1_1:66193848-66193867 | None:intergenic | 45.0% | |
| ! | CAAGTTGACCCTTCTAAGCA+AGG | - | chr1_1:66193846-66193865 | Msa0037230:intron | 45.0% |
| ! | CAATCTGGCACCAAAAGTGT+GGG | + | chr1_1:66193931-66193950 | None:intergenic | 45.0% |
| ATGTCTTGTGTGCCATAGTG+TGG | - | chr1_1:66194061-66194080 | Msa0037230:intron | 45.0% | |
| TGTCACCATCACACTCTTTC+AGG | - | chr1_1:66194090-66194109 | Msa0037230:intron | 45.0% | |
| ! | GATCTCCTGAAAGAGTGTGA+TGG | + | chr1_1:66194098-66194117 | None:intergenic | 45.0% |
| ! | ACTAGGTTGAGGGGTAACTT+TGG | + | chr1_1:66194231-66194250 | None:intergenic | 45.0% |
| ! | CTCAGTGTTACTAGGTTGAG+GGG | + | chr1_1:66194240-66194259 | None:intergenic | 45.0% |
| ! | CCAGGTATCTCAGTGTTACT+AGG | + | chr1_1:66194248-66194267 | None:intergenic | 45.0% |
| CCTAGTAACACTGAGATACC+TGG | - | chr1_1:66194245-66194264 | Msa0037230:intron | 45.0% | |
| TTGTACTATGTCCCTCCTCA+CGG | + | chr1_1:66194297-66194316 | None:intergenic | 45.0% | |
| GGAGGGACATAGTACAAGAT+TGG | - | chr1_1:66194300-66194319 | Msa0037230:intron | 45.0% | |
| AACGTGCTGGAGAAAGACTA+AGG | - | chr1_1:66194355-66194374 | Msa0037230:CDS | 45.0% | |
| ACGTGCTGGAGAAAGACTAA+GGG | - | chr1_1:66194356-66194375 | Msa0037230:CDS | 45.0% | |
| !! | GAAAAAAAAAAAAAAAAAAA+CGG | + | chr1_1:66192480-66192499 | None:intergenic | 5.0% |
| ! | GAGCAGAGAAAGTGTGTGAG+TGG | + | chr1_1:66192415-66192434 | None:intergenic | 50.0% |
| CTCTCCTCTTCTCTCAAACG+AGG | - | chr1_1:66192437-66192456 | Msa0037230:exon | 50.0% | |
| ! | TGCAGCCTTACCCTGTTTCT+AGG | + | chr1_1:66193738-66193757 | None:intergenic | 50.0% |
| ! | TACGGGAGCTTTAATGCACC+GGG | - | chr1_1:66193801-66193820 | Msa0037230:intron | 50.0% |
| GTTGACCCTTCTAAGCAAGG+TGG | - | chr1_1:66193849-66193868 | Msa0037230:intron | 50.0% | |
| CCAATCTGGCACCAAAAGTG+TGG | + | chr1_1:66193932-66193951 | None:intergenic | 50.0% | |
| !!! | CCACACTTTTGGTGCCAGAT+TGG | - | chr1_1:66193929-66193948 | Msa0037230:intron | 50.0% |
| TTGTAAGAAGTCGTGCCGTG+AGG | - | chr1_1:66194279-66194298 | Msa0037230:intron | 50.0% | |
| ! | CCAGCACGTTGTTGACTAAG+CGG | + | chr1_1:66194345-66194364 | None:intergenic | 50.0% |
| ACTGGGCCACTGTTGTTGTG+TGG | + | chr1_1:66192351-66192370 | None:intergenic | 55.0% | |
| TTGCAGGGGAAGACTGTGAG+AGG | - | chr1_1:66194023-66194042 | Msa0037230:intron | 55.0% | |
| GCACGACTTCTTACAAGCCG+CGG | + | chr1_1:66194275-66194294 | None:intergenic | 55.0% | |
| TAAGAAGTCGTGCCGTGAGG+AGG | - | chr1_1:66194282-66194301 | Msa0037230:intron | 55.0% | |
| AAGAAGTCGTGCCGTGAGGA+GGG | - | chr1_1:66194283-66194302 | Msa0037230:intron | 55.0% | |
| CCGCTTAGTCAACAACGTGC+TGG | - | chr1_1:66194342-66194361 | Msa0037230:CDS | 55.0% | |
| CAATTGGTGGGACCCCTTCC+CGG | - | chr1_1:66193768-66193787 | Msa0037230:intron | 60.0% | |
| TATACGCAGGGTCCGGGAAG+GGG | + | chr1_1:66193783-66193802 | None:intergenic | 60.0% | |
| GTATACGCAGGGTCCGGGAA+GGG | + | chr1_1:66193784-66193803 | None:intergenic | 60.0% | |
| CTTCCCGGACCCTGCGTATA+CGG | - | chr1_1:66193783-66193802 | Msa0037230:intron | 60.0% | |
| TTCCCGGACCCTGCGTATAC+GGG | - | chr1_1:66193784-66193803 | Msa0037230:intron | 60.0% | |
| CTGAGATACCTGGTCCTCCG+CGG | - | chr1_1:66194255-66194274 | Msa0037230:intron | 60.0% | |
| CGACTTCTTACAAGCCGCGG+AGG | + | chr1_1:66194272-66194291 | None:intergenic | 60.0% | |
| CGGGAAGGGGTCCCACCAAT+TGG | + | chr1_1:66193770-66193789 | None:intergenic | 65.0% | |
| CGTATACGCAGGGTCCGGGA+AGG | + | chr1_1:66193785-66193804 | None:intergenic | 65.0% | |
| CTCCCGTATACGCAGGGTCC+GGG | + | chr1_1:66193789-66193808 | None:intergenic | 65.0% | |
| GCTCCCGTATACGCAGGGTC+CGG | + | chr1_1:66193790-66193809 | None:intergenic | 65.0% | |
| CTTACAAGCCGCGGAGGACC+AGG | + | chr1_1:66194266-66194285 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 66192146 | 66194654 | 66192146 | ID=Msa0037230;Name=Msa0037230 |
| chr1_1 | mRNA | 66192146 | 66194654 | 66192146 | ID=Msa0037230-mRNA-1;Parent=Msa0037230;Name=Msa0037230-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0.2|0.8|0.25|0.2|5|305|201 |
| chr1_1 | exon | 66192146 | 66192771 | 66192146 | ID=Msa0037230-mRNA-1:exon:21401;Parent=Msa0037230-mRNA-1 |
| chr1_1 | exon | 66193199 | 66193282 | 66193199 | ID=Msa0037230-mRNA-1:exon:21400;Parent=Msa0037230-mRNA-1 |
| chr1_1 | exon | 66193634 | 66193687 | 66193634 | ID=Msa0037230-mRNA-1:exon:21399;Parent=Msa0037230-mRNA-1 |
| chr1_1 | exon | 66194342 | 66194480 | 66194342 | ID=Msa0037230-mRNA-1:exon:21398;Parent=Msa0037230-mRNA-1 |
| chr1_1 | exon | 66194647 | 66194654 | 66194647 | ID=Msa0037230-mRNA-1:exon:21397;Parent=Msa0037230-mRNA-1 |
| chr1_1 | CDS | 66194647 | 66194654 | 66194647 | ID=Msa0037230-mRNA-1:cds;Parent=Msa0037230-mRNA-1 |
| chr1_1 | CDS | 66194342 | 66194480 | 66194342 | ID=Msa0037230-mRNA-1:cds;Parent=Msa0037230-mRNA-1 |
| chr1_1 | CDS | 66193634 | 66193687 | 66193634 | ID=Msa0037230-mRNA-1:cds;Parent=Msa0037230-mRNA-1 |
| chr1_1 | CDS | 66193199 | 66193282 | 66193199 | ID=Msa0037230-mRNA-1:cds;Parent=Msa0037230-mRNA-1 |
| chr1_1 | CDS | 66192451 | 66192771 | 66192451 | ID=Msa0037230-mRNA-1:cds;Parent=Msa0037230-mRNA-1 |
| chr1_1 | three_prime_UTR | 66192146 | 66192450 | 66192146 | ID=Msa0037230-mRNA-1:three_prime_utr;Parent=Msa0037230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
