AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0013540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013540 MtrunA17_Chr1g0163011 80.864 648 20 5 1 645 1 547 0.0 958
Msa0013540 MtrunA17_Chr1g0175191 33.146 356 152 10 255 600 531 810 7.29e-44 171
Msa0013540 MtrunA17_Chr7g0257101 32.948 346 157 9 270 602 599 882 1.13e-43 170
Msa0013540 MtrunA17_Chr4g0066741 29.301 372 180 10 270 636 209 502 7.61e-36 145
Msa0013540 MtrunA17_Chr2g0286291 30.149 335 158 9 270 601 212 473 7.13e-35 142
Msa0013540 MtrunA17_Chr5g0403921 27.735 393 186 12 270 639 205 522 3.42e-33 136
Msa0013540 MtrunA17_Chr4g0066651 30.025 393 174 13 270 639 1010 1324 1.18e-31 133
Msa0013540 MtrunA17_Chr5g0442141 29.377 337 162 8 271 600 639 906 1.38e-31 132
Msa0013540 MtrunA17_Chr1g0205891 31.008 387 163 13 270 636 397 699 2.14e-31 131
Msa0013540 MtrunA17_Chr5g0394201 30.390 385 167 13 270 636 384 685 6.72e-31 130
Msa0013540 MtrunA17_Chr3g0095091 28.947 342 157 9 271 600 593 860 8.76e-30 127
Msa0013540 MtrunA17_Chr3g0137091 30.769 299 134 5 269 549 309 552 1.17e-28 123
Msa0013540 MtrunA17_Chr4g0052341 28.184 369 183 10 261 616 755 1054 5.71e-28 121
Msa0013540 MtrunA17_Chr7g0248031 30.053 376 201 13 241 606 987 1310 1.88e-26 116
Msa0013540 MtrunA17_Chr8g0348721 28.389 391 217 13 225 606 966 1302 9.52e-25 110
Msa0013540 MtrunA17_Chr7g0232121 25.773 388 194 10 271 635 61 377 2.25e-24 109
Msa0013540 MtrunA17_Chr1g0183681 24.416 385 172 13 265 602 407 719 9.63e-20 94.7
Msa0013540 MtrunA17_Chr7g0231521 27.876 226 104 4 271 490 61 233 1.67e-19 93.6
Msa0013540 MtrunA17_Chr5g0393461 28.219 365 184 14 271 625 212 508 1.06e-17 87.8
Msa0013540 MtrunA17_Chr4g0040301 32.500 160 82 6 277 426 18 161 1.75e-15 80.5
Msa0013540 MtrunA17_Chr8g0384531 24.931 361 172 12 270 602 405 694 3.43e-15 80.1
Msa0013540 MtrunA17_Chr4g0017211 23.352 364 179 13 269 600 1470 1765 8.40e-15 79.0
Msa0013540 MtrunA17_Chr1g0149871 52.459 61 27 1 269 329 264 322 1.90e-13 72.0
Msa0013540 MtrunA17_Chr3g0086111 24.068 295 155 9 271 552 206 444 7.12e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0013540 AT2G02090.1 54.222 675 169 8 1 645 1 565 0.0 685
Msa0013540 AT3G12810.1 32.591 359 150 10 255 600 546 825 7.36e-42 165
Msa0013540 AT3G12810.2 32.591 359 150 10 255 600 542 821 7.42e-42 165
Msa0013540 AT3G57300.1 31.214 346 163 9 270 602 607 890 1.54e-39 157
Msa0013540 AT3G57300.4 31.214 346 163 9 270 602 607 890 1.54e-39 157
Msa0013540 AT3G57300.3 31.214 346 163 9 270 602 607 890 1.79e-39 157
Msa0013540 AT3G57300.2 28.496 379 163 10 270 602 607 923 1.01e-35 145
Msa0013540 AT3G06400.2 29.552 335 160 9 270 601 210 471 1.95e-34 141
Msa0013540 AT3G06400.3 29.552 335 160 9 270 601 210 471 1.96e-34 141
Msa0013540 AT3G06400.1 29.552 335 160 9 270 601 210 471 1.98e-34 141
Msa0013540 AT5G18620.1 29.674 337 157 9 270 601 215 476 3.56e-34 140
Msa0013540 AT5G18620.2 29.674 337 157 9 270 601 215 476 3.67e-34 140
Msa0013540 AT5G66750.1 26.980 404 196 13 222 601 176 504 3.58e-33 137
Msa0013540 AT5G19310.2 30.366 382 176 11 268 636 140 444 1.81e-32 135
Msa0013540 AT5G19310.1 30.077 389 182 11 261 636 397 708 3.06e-32 134
Msa0013540 AT3G06010.1 29.659 381 176 9 270 636 424 726 3.17e-31 131
Msa0013540 AT4G31900.2 28.829 333 157 9 271 600 206 461 6.38e-31 130
Msa0013540 AT4G31900.3 28.829 333 157 9 271 600 247 502 7.31e-31 130
Msa0013540 AT4G31900.1 28.829 333 157 9 271 600 247 502 7.34e-31 130
Msa0013540 AT2G13370.1 29.586 338 160 9 271 600 647 914 2.21e-30 129
Msa0013540 AT2G13370.2 29.586 338 160 9 271 600 647 914 2.21e-30 129
Msa0013540 AT2G13370.3 29.586 338 160 9 271 600 647 914 2.21e-30 129
Msa0013540 AT2G25170.1 26.966 356 167 8 269 603 293 576 1.04e-29 127
Msa0013540 AT2G25170.4 26.966 356 167 8 269 603 293 576 1.04e-29 127
Msa0013540 AT2G25170.3 26.966 356 167 8 269 603 319 602 1.07e-29 127
Msa0013540 AT2G25170.2 26.966 356 167 8 269 603 310 593 1.11e-29 127
Msa0013540 AT2G28290.5 27.182 401 175 13 270 639 776 1090 8.59e-29 124
Msa0013540 AT2G28290.1 27.182 401 175 13 270 639 775 1089 8.67e-29 124
Msa0013540 AT2G28290.2 27.182 401 175 13 270 639 775 1089 8.73e-29 124
Msa0013540 AT2G28290.3 27.182 401 175 13 270 639 775 1089 9.04e-29 124
Msa0013540 AT2G28290.4 27.182 401 175 13 270 639 775 1089 9.04e-29 124
Msa0013540 AT2G28290.6 27.182 401 175 13 270 639 776 1090 9.04e-29 124
Msa0013540 AT2G44980.1 25.959 443 233 11 209 635 17 380 5.82e-27 117
Msa0013540 AT2G44980.3 25.885 452 230 12 209 635 17 388 2.09e-26 115
Msa0013540 AT2G44980.2 25.442 452 233 11 209 635 17 389 5.50e-26 114
Msa0013540 AT5G44800.1 29.412 340 162 10 271 600 711 982 7.08e-26 115
Msa0013540 AT2G46020.2 35.938 192 97 6 241 426 974 1145 1.07e-23 108
Msa0013540 AT2G46020.3 35.938 192 97 6 241 426 974 1145 1.07e-23 108
Msa0013540 AT2G46020.4 35.938 192 97 6 241 426 974 1145 1.07e-23 108
Msa0013540 AT2G46020.5 36.508 189 99 5 241 426 974 1144 4.06e-23 106
Msa0013540 AT2G46020.1 36.508 189 99 5 241 426 974 1144 4.06e-23 106
Msa0013540 AT2G46020.6 36.508 189 99 5 241 426 974 1144 4.06e-23 106
Msa0013540 AT2G18760.3 24.932 365 205 10 265 608 460 776 1.45e-19 94.7
Msa0013540 AT2G18760.4 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT2G18760.1 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT2G18760.2 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT2G18760.7 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT2G18760.5 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT2G18760.6 24.932 365 205 10 265 608 401 717 2.17e-19 94.0
Msa0013540 AT1G03750.1 32.335 167 87 4 270 426 160 310 2.47e-19 93.6
Msa0013540 AT3G54280.2 24.100 361 181 12 269 600 1502 1798 1.57e-16 85.1
Msa0013540 AT3G54280.1 24.100 361 181 12 269 600 1471 1767 1.58e-16 85.1
Msa0013540 AT5G63950.1 24.234 359 175 12 270 602 398 685 1.69e-15 81.3
Msa0013540 AT3G19210.3 34.161 161 91 5 271 426 208 358 2.21e-15 80.9
Msa0013540 AT3G19210.1 34.161 161 91 5 271 426 208 358 2.24e-15 80.9
Msa0013540 AT3G19210.2 34.161 161 91 5 271 426 208 358 2.43e-15 80.9
Msa0013540 AT5G63950.2 23.164 354 168 11 270 602 398 668 2.30e-13 74.3
Msa0013540 AT1G02670.1 29.101 189 113 5 248 426 134 311 2.76e-13 73.9
Msa0013540 AT1G02670.7 29.101 189 113 5 248 426 123 300 3.32e-13 73.6
Msa0013540 AT1G02670.6 29.101 189 113 5 248 426 96 273 4.40e-13 73.2
Msa0013540 AT1G02670.3 29.101 189 113 5 248 426 123 300 7.36e-13 72.4
Msa0013540 AT1G02670.5 29.101 189 113 5 248 426 96 273 7.38e-13 72.4
Msa0013540 AT1G02670.4 29.101 189 113 5 248 426 123 300 7.47e-13 72.0
Msa0013540 AT3G16600.1 34.615 182 91 7 270 426 77 255 8.15e-13 72.4
Msa0013540 AT1G02670.2 29.101 189 113 5 248 426 123 300 1.07e-12 72.0

Find 146 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCGTATGAAGTCTATATT+AGG 0.202585 1_1:-20880614 Msa0013540:CDS
AACTAGACCTAAAGGCTAAA+AGG 0.210319 1_1:+20879141 None:intergenic
GCTTTCAAGTTTGTGTTTAT+TGG 0.226654 1_1:-20883651 Msa0013540:CDS
GGAGAGTTGTTTGGTTCTTC+TGG 0.231117 1_1:-20884542 Msa0013540:CDS
CCTTGTAATGAATTTGTTAC+AGG 0.258334 1_1:-20880735 Msa0013540:CDS
AGTTTGTCCTGCTTCTGTTT+TGG 0.261009 1_1:-20883299 Msa0013540:CDS
CAAACCATCCCTTGTTGATT+AGG 0.273536 1_1:-20880107 Msa0013540:CDS
CTGCATCCAATAGGTGCTTT+TGG 0.276315 1_1:-20880042 Msa0013540:CDS
GCTGCATCACATCAGATTTC+AGG 0.290922 1_1:+20880573 None:intergenic
CGATAATATCCTTGATGAAT+TGG 0.297062 1_1:-20884789 Msa0013540:CDS
AATCACTTGCACAACGATTC+TGG 0.297609 1_1:-20883334 Msa0013540:CDS
GCCCATTTCATCTGCCAATA+TGG 0.301343 1_1:+20883490 None:intergenic
AAGATTTCTGGTTATCACTA+TGG 0.312136 1_1:-20883858 Msa0013540:intron
TTCAGGCGCCGTAAAATAAA+TGG 0.317710 1_1:+20880590 None:intergenic
CTTCTGGTGCGGTTTGTGAT+AGG 0.319349 1_1:-20884526 Msa0013540:CDS
GGAGGAGGAGGAGGTGGTTG+CGG 0.333307 1_1:+20884866 None:intergenic
GCAGAAGTGTGCGAGGATTT+CGG 0.339211 1_1:-20884576 Msa0013540:CDS
CAGACGAGAAGAACATTAAA+TGG 0.340627 1_1:+20883154 None:intergenic
TTCATTACAAGGCTTACTTC+AGG 0.366763 1_1:+20880746 None:intergenic
AGCCATATTGGCAGATGAAA+TGG 0.368777 1_1:-20883492 Msa0013540:CDS
ACTGAAGAAGGAGGAGGAGG+AGG 0.389671 1_1:+20884857 None:intergenic
GGGCCTTGGCAAAACGGTTC+AGG 0.392499 1_1:-20883471 Msa0013540:intron
AGACGCAAATGAAGATGATT+TGG 0.394410 1_1:-20884612 Msa0013540:CDS
AGCTCCACTTCCAACGCTTC+AGG 0.400293 1_1:+20882996 None:intergenic
TTGAATTCCTTGTCCAAGTC+AGG 0.408175 1_1:-20883187 Msa0013540:CDS
TGCGGTTTGTGATAGGTATT+CGG 0.411479 1_1:-20884519 Msa0013540:CDS
TCAAAGCCAAAAGCACCTAT+TGG 0.413493 1_1:+20880036 None:intergenic
CATGTGTCATACAGCCATAT+TGG 0.425524 1_1:-20883504 Msa0013540:intron
CAATTCATCAAGGATATTAT+CGG 0.427484 1_1:+20884790 None:intergenic
TTCGGAAGTTGAATCTTCTT+CGG 0.429991 1_1:-20884501 Msa0013540:CDS
ATCTTCATTTGCGTCTTCAA+TGG 0.431936 1_1:+20884619 None:intergenic
GCTCCCGAGTTTGTGTTTGT+TGG 0.438071 1_1:-20883917 Msa0013540:CDS
GGAGGAGGAGGTGGTTGCGG+TGG 0.439501 1_1:+20884869 None:intergenic
GCTGCTCCGACGGCGAGACC+TGG 0.440982 1_1:-20884734 Msa0013540:CDS
TACTTTGGACAGAGTTATAG+AGG 0.446614 1_1:-20880010 Msa0013540:CDS
GTGTAGTAACAGCTACTGCC+AGG 0.447030 1_1:-20880844 Msa0013540:CDS
GGCGGCTGCTGCTGCTCCGA+CGG 0.448279 1_1:-20884744 Msa0013540:CDS
ACGAAATCTCCGACGACGAA+TGG 0.451974 1_1:-20884973 Msa0013540:CDS
TGCTGTTGTTGTATCGGAAG+AGG 0.460864 1_1:-20884296 Msa0013540:CDS
ATCGTAAAATCCTGAAGCGT+TGG 0.466630 1_1:-20883006 Msa0013540:CDS
AACCAACGCTTGATGCTGAC+AGG 0.467572 1_1:-20882890 Msa0013540:CDS
GCTAGGAAGCTGCATCCAAT+AGG 0.467747 1_1:-20880051 Msa0013540:CDS
TGTCGTAATGGAAAAGCAAC+AGG 0.468244 1_1:-20880391 Msa0013540:CDS
TTAAAGCCGTATCAGCTTGT+CGG 0.470384 1_1:-20884330 Msa0013540:CDS
TGCTGAATGTGATGCGGCGG+CGG 0.472132 1_1:-20884762 Msa0013540:CDS
GTCGTATGAAGTCTATATTA+GGG 0.474577 1_1:-20880613 Msa0013540:CDS
CGAAATCTCCGACGACGAAT+GGG 0.477170 1_1:-20884972 Msa0013540:CDS
ACTAGACCTAAAGGCTAAAA+GGG 0.477565 1_1:+20879142 None:intergenic
TTTCTGGATCCCTTTGTGGA+GGG 0.482421 1_1:+20879294 None:intergenic
TAGCCTTTAGGTCTAGTTGA+AGG 0.483488 1_1:-20879136 None:intergenic
TTGGCAGATGAAATGGGCCT+TGG 0.483542 1_1:-20883485 Msa0013540:CDS
CCTGTAACAAATTCATTACA+AGG 0.483724 1_1:+20880735 None:intergenic
GATAGAGATGACAGATTGAC+AGG 0.489265 1_1:+20880803 None:intergenic
AAAGATTCGAGAGGCGGAGG+AGG 0.490488 1_1:+20884902 None:intergenic
GTCGGAGATTTCGTATAACT+CGG 0.497644 1_1:+20884982 None:intergenic
GCCATATTGGCAGATGAAAT+GGG 0.497867 1_1:-20883491 Msa0013540:CDS
AATCTGTCATCTCTATCTGT+TGG 0.500766 1_1:-20880797 Msa0013540:CDS
GTAGAAGATTACCCGGTGAA+TGG 0.500798 1_1:+20879963 None:intergenic
TTTCTGTCCTTCAATATCAC+GGG 0.502860 1_1:-20883237 Msa0013540:CDS
GAAGTGGAGCTGTGTGCTGA+TGG 0.505582 1_1:-20882984 Msa0013540:CDS
TGAAATGGGCCTTGGCAAAA+CGG 0.505899 1_1:-20883477 Msa0013540:CDS
GTGCAGACCCGTGATATTGA+AGG 0.508019 1_1:+20883230 None:intergenic
TGAATTTGTTACAGGAGCTA+TGG 0.508259 1_1:-20880727 Msa0013540:CDS
TTGTTGTATCGGAAGAGGAT+TGG 0.510251 1_1:-20884291 Msa0013540:CDS
TAGAAAGATTCGAGAGGCGG+AGG 0.510394 1_1:+20884899 None:intergenic
CTACTGCCAGGGAAAACAAA+AGG 0.514391 1_1:-20880832 Msa0013540:CDS
AAATCCTGAAGCGTTGGAAG+TGG 0.516959 1_1:-20883000 Msa0013540:CDS
GGATGAGGCACATGCTTTGA+AGG 0.517420 1_1:-20882963 Msa0013540:CDS
GCAATCGTCGTCGTCGGAAA+CGG 0.522024 1_1:+20884832 None:intergenic
TCTCCTTCAACTAGACCTAA+AGG 0.523579 1_1:+20879133 None:intergenic
TGGAGGAGGCAATCCTGACT+TGG 0.523980 1_1:+20883174 None:intergenic
TGAATCCTCTTGCAAATACA+AGG 0.525540 1_1:+20879232 None:intergenic
TCGGAAACGGTTACTGAAGA+AGG 0.530169 1_1:+20884845 None:intergenic
ATCGTGCTGTTTCACAAGCT+CGG 0.532030 1_1:-20880338 Msa0013540:CDS
AGGATTTCGGTGGAGTTGAA+AGG 0.532985 1_1:-20884563 Msa0013540:CDS
GCAGGTTCAATATGTCGTAA+TGG 0.533569 1_1:-20880403 Msa0013540:intron
TTGTATCGGAAGAGGATTGG+AGG 0.533601 1_1:-20884288 Msa0013540:CDS
TTCGGTTAGAATTGTTACTC+AGG 0.533772 1_1:-20884483 Msa0013540:intron
AAAGGGATCCAGAAAAGAGT+TGG 0.534651 1_1:-20879286 Msa0013540:CDS
TTCAACTGAAGATGAAATTG+AGG 0.535138 1_1:-20884645 Msa0013540:CDS
GCAACAGGAACATGCTTACA+AGG 0.535721 1_1:-20880376 Msa0013540:CDS
GAGTTGAAAGGAGAGTTGTT+TGG 0.536075 1_1:-20884551 Msa0013540:CDS
TTAACACCGACAAGCTGATA+CGG 0.537008 1_1:+20884324 None:intergenic
TTCAACGCAATCGTCGTCGT+CGG 0.539439 1_1:+20884826 None:intergenic
TTCGCCTAATCAACAAGGGA+TGG 0.539930 1_1:+20880103 None:intergenic
ACCTAAAGGCTAAAAGGGAG+TGG 0.541890 1_1:+20879147 None:intergenic
ACAATGACTTCTCCATTCAC+CGG 0.542504 1_1:-20879975 Msa0013540:CDS
TGAAGAGGATGGTGGTGGTG+TGG 0.542554 1_1:-20884684 Msa0013540:CDS
GCAAATGAAGATGATTTGGT+TGG 0.545650 1_1:-20884608 Msa0013540:CDS
GTGATATTGAAGGACAGAAA+AGG 0.551063 1_1:+20883240 None:intergenic
TATAGAGCTCCCTCCACAAA+GGG 0.553539 1_1:-20879303 Msa0013540:CDS
AGCTGATACGGCTTTAACAA+CGG 0.555410 1_1:+20884336 None:intergenic
GAGGTTTATTATAGATGATG+AGG 0.556603 1_1:-20884708 Msa0013540:CDS
TATAGATGATGAGGATGAAG+AGG 0.557091 1_1:-20884699 Msa0013540:CDS
GATGATGTTGATGTTGCTTG+TGG 0.560528 1_1:-20884381 Msa0013540:CDS
TCGGAGATTTCGTATAACTC+GGG 0.560591 1_1:+20884983 None:intergenic
GTTACTGAAGAAGGAGGAGG+AGG 0.561945 1_1:+20884854 None:intergenic
CAATGACTTCTCCATTCACC+GGG 0.563438 1_1:-20879974 Msa0013540:intron
CGGTTGAAAATTCGAATCCT+CGG 0.571272 1_1:+20884356 None:intergenic
AGAAGAACATTAAATGGAGG+AGG 0.574338 1_1:+20883160 None:intergenic
TTCTTGAAGTTCTACCTCGA+CGG 0.575172 1_1:-20880281 Msa0013540:CDS
CTCCGTCCAGGTCTCGCCGT+CGG 0.575296 1_1:+20884728 None:intergenic
AGGATGTTGTTCGCTTTGCT+AGG 0.576825 1_1:-20880068 Msa0013540:CDS
TGTTCCAACAAACACAAACT+CGG 0.577785 1_1:+20883913 None:intergenic
ACAGGAGCTATGGTCTATGT+TGG 0.579776 1_1:-20880717 Msa0013540:CDS
TCCCTGTCAGCATCAAGCGT+TGG 0.583066 1_1:+20882888 None:intergenic
TAGGCGAATTTATAATGATG+AGG 0.585416 1_1:-20880088 Msa0013540:CDS
CTCCGACGGCGAGACCTGGA+CGG 0.585948 1_1:-20884730 Msa0013540:CDS
CAGCATCATCCAATTCATCA+AGG 0.588166 1_1:+20884780 None:intergenic
TCTATAATAAACCTCCGTCC+AGG 0.590421 1_1:+20884716 None:intergenic
CCTAAAGGCTAAAAGGGAGT+GGG 0.590527 1_1:+20879148 None:intergenic
GTGATTCTCCCATTCGTCGT+CGG 0.594242 1_1:+20884964 None:intergenic
ATTGAAGGACAGAAAAGGAC+GGG 0.598964 1_1:+20883245 None:intergenic
AGAGGCGGAGGAGGAGAACG+AGG 0.600254 1_1:+20884911 None:intergenic
GAGCTGTGTGCTGATGGATG+AGG 0.605324 1_1:-20882978 Msa0013540:CDS
TAATAGAAAGATTCGAGAGG+CGG 0.608602 1_1:+20884896 None:intergenic
GTTCCAACAAACACAAACTC+GGG 0.608639 1_1:+20883914 None:intergenic
GATGATGAGGATGAAGAGGA+TGG 0.609278 1_1:-20884695 Msa0013540:CDS
GTTGTTTGGTTCTTCTGGTG+CGG 0.609444 1_1:-20884537 Msa0013540:CDS
GCAGGACAAACTATAAGATG+TGG 0.609749 1_1:+20883310 None:intergenic
ACGGTTACTGAAGAAGGAGG+AGG 0.613831 1_1:+20884851 None:intergenic
TAATTATTTATTTGCCGTCG+AGG 0.615643 1_1:+20880267 None:intergenic
TGCACGCGCAGCATACTGCA+AGG 0.616432 1_1:-20883212 Msa0013540:CDS
TATCGGAAGAGGATTGGAGG+AGG 0.624019 1_1:-20884285 Msa0013540:intron
GAGGATGAAGAGGATGGTGG+TGG 0.630319 1_1:-20884689 Msa0013540:CDS
ATAAATTCGCCTAATCAACA+AGG 0.630699 1_1:+20880098 None:intergenic
AGGCAATCCTGACTTGGACA+AGG 0.633867 1_1:+20883180 None:intergenic
TGATGTTGCTTGTGGTTCCG+AGG 0.635138 1_1:-20884373 Msa0013540:CDS
CTAAAGGCTAAAAGGGAGTG+GGG 0.638625 1_1:+20879149 None:intergenic
TTATAGAGCTCCCTCCACAA+AGG 0.647108 1_1:-20879304 Msa0013540:CDS
ACCAACGCTTGATGCTGACA+GGG 0.650956 1_1:-20882889 Msa0013540:CDS
TGTAGTAACAGCTACTGCCA+GGG 0.653877 1_1:-20880843 Msa0013540:CDS
AAGCTTTGCAGAAGTGTGCG+AGG 0.656865 1_1:-20884583 Msa0013540:CDS
GGGAAAGGGAACTAAAGAAG+TGG 0.662059 1_1:-20883270 Msa0013540:CDS
TAAATTCGCCTAATCAACAA+GGG 0.662060 1_1:+20880099 None:intergenic
TGCTTACAAGGAAGCCATCG+AGG 0.663670 1_1:-20880364 Msa0013540:CDS
ACGAGAAGAACATTAAATGG+AGG 0.665822 1_1:+20883157 None:intergenic
TGATGCTGAATGTGATGCGG+CGG 0.667482 1_1:-20884765 Msa0013540:CDS
AACAGCACGATACTCCTCGA+TGG 0.672839 1_1:+20880350 None:intergenic
GATGAGGATGAAGAGGATGG+TGG 0.673091 1_1:-20884692 Msa0013540:CDS
TATTGAAGGACAGAAAAGGA+CGG 0.676101 1_1:+20883244 None:intergenic
GAAGTGTGCGAGGATTTCGG+TGG 0.679153 1_1:-20884573 Msa0013540:CDS
GAAACGGTTACTGAAGAAGG+AGG 0.680777 1_1:+20884848 None:intergenic
CGACGGCGAGACCTGGACGG+AGG 0.686254 1_1:-20884727 Msa0013540:CDS
TTATAATAGAAAGATTCGAG+AGG 0.709391 1_1:+20884893 None:intergenic
GGATGATGCTGAATGTGATG+CGG 0.710544 1_1:-20884768 Msa0013540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTCTTAAAAAATTAAAA+AGG + chr1_1:20882309-20882328 None:intergenic 10.0%
!! AATACTATTATAAATATATG+AGG - chr1_1:20882467-20882486 Msa0013540:intron 10.0%
!!! ATTTTTTTTGTTGCTTTTTT+TGG - chr1_1:20879697-20879716 Msa0013540:intron 15.0%
!!! TATTATGTTTTTAAGATTTC+TGG - chr1_1:20880272-20880291 Msa0013540:CDS 15.0%
!! ATGAAGTGAAAATTAAATAT+AGG - chr1_1:20881689-20881708 Msa0013540:intron 15.0%
!! AAAATTAAATATAGGAATGA+AGG - chr1_1:20881697-20881716 Msa0013540:intron 15.0%
!! AAATTAAATATAGGAATGAA+GGG - chr1_1:20881698-20881717 Msa0013540:intron 15.0%
!!! AATTTTTTAAGAAAAGATGT+AGG - chr1_1:20882313-20882332 Msa0013540:intron 15.0%
!!! AAAATTAGCTTAAATTTTGT+TGG - chr1_1:20882692-20882711 Msa0013540:intron 15.0%
!! ATAATAACAAATAAAGAAAC+AGG + chr1_1:20883674-20883693 None:intergenic 15.0%
!! TAGATAAATGAACAAAAAAC+AGG + chr1_1:20880705-20880724 None:intergenic 20.0%
!!! CACAAAATATCTATATGTTT+TGG - chr1_1:20881385-20881404 Msa0013540:intron 20.0%
!!! TTATACTTCCTTTTTATAGT+TGG - chr1_1:20881571-20881590 Msa0013540:intron 20.0%
!!! TTTTACAGATTAGTGATTAA+AGG - chr1_1:20882558-20882577 Msa0013540:intron 20.0%
!! ACAAAAACATACAAACTATA+TGG + chr1_1:20882637-20882656 None:intergenic 20.0%
!! TATAGAATTGATAGAGAAAA+AGG - chr1_1:20882778-20882797 Msa0013540:intron 20.0%
!! AAATAATGAAGAAATCTGTT+AGG + chr1_1:20883051-20883070 None:intergenic 20.0%
!! GAAAAATGATCAAACTTAAA+GGG + chr1_1:20884354-20884373 None:intergenic 20.0%
!!! TTTAAGTTTGATCATTTTTC+CGG - chr1_1:20884354-20884373 Msa0013540:CDS 20.0%
!! TTGGGAAAAATAAAACTTAA+AGG + chr1_1:20884386-20884405 None:intergenic 20.0%
!!! AAGTTTTATTTTTCCCAATA+TGG - chr1_1:20884388-20884407 Msa0013540:intron 20.0%
!! AATTAGATGTTAACATTTCA+TGG - chr1_1:20884597-20884616 Msa0013540:CDS 20.0%
!! CATAATTTAACACAACTTAA+AGG - chr1_1:20884666-20884685 Msa0013540:CDS 20.0%
! TTATAATAGAAAGATTCGAG+AGG + chr1_1:20879252-20879271 None:intergenic 25.0%
! CAATTCATCAAGGATATTAT+CGG + chr1_1:20879355-20879374 None:intergenic 25.0%
!!! TTTTTTGTTGCTTTTTTTGG+TGG - chr1_1:20879700-20879719 Msa0013540:intron 25.0%
!!! ATTTTTTGCTGTTGTTGTAT+CGG - chr1_1:20879840-20879859 Msa0013540:intron 25.0%
!!! AGGTAAATTTTTAGGGTTTT+TGG - chr1_1:20879877-20879896 Msa0013540:intron 25.0%
! GTGATTACATTCAATTATAC+TGG + chr1_1:20880115-20880134 None:intergenic 25.0%
! TCTTAAAAACATAATAGCAG+TGG + chr1_1:20880268-20880287 None:intergenic 25.0%
!!! TGTCTTGTGTTTTTGTTTTT+AGG - chr1_1:20880762-20880781 Msa0013540:CDS 25.0%
!!! AAATATCTATATGTTTTGGC+TGG - chr1_1:20881389-20881408 Msa0013540:intron 25.0%
!!! AATATCTATATGTTTTGGCT+GGG - chr1_1:20881390-20881409 Msa0013540:intron 25.0%
! TTAAATCTCACATTTCATAG+TGG - chr1_1:20881507-20881526 Msa0013540:intron 25.0%
! AATATTAACCACTTGAGAAT+CGG + chr1_1:20881615-20881634 None:intergenic 25.0%
! TATGAATTTATGATAGCAAC+TGG - chr1_1:20881652-20881671 Msa0013540:intron 25.0%
! TAGCAACTGGAATTTAATAT+AGG - chr1_1:20881665-20881684 Msa0013540:intron 25.0%
! TTCCTTATACACAGTAATAA+TGG + chr1_1:20881741-20881760 None:intergenic 25.0%
! TTACTGTGTATAAGGAAATA+TGG - chr1_1:20881744-20881763 Msa0013540:intron 25.0%
!!! AGAATCATTTTGATCATTGT+GGG + chr1_1:20881845-20881864 None:intergenic 25.0%
! AAAACCAAACGTAATGTAAT+GGG + chr1_1:20882114-20882133 None:intergenic 25.0%
! TAAAACCAAACGTAATGTAA+TGG + chr1_1:20882115-20882134 None:intergenic 25.0%
! GTTGAGGTTAAAAATCATTT+AGG - chr1_1:20882166-20882185 Msa0013540:intron 25.0%
! GTTAGATTTAGATATGTCTT+AGG - chr1_1:20882355-20882374 Msa0013540:intron 25.0%
!!! TAAATTTTGTTGGCTTTTGA+TGG - chr1_1:20882702-20882721 Msa0013540:intron 25.0%
!!! TTTTGATGGATTAGTTAATG+TGG - chr1_1:20882716-20882735 Msa0013540:intron 25.0%
! GTGATAAAAGTAAGAGATAA+GGG + chr1_1:20882893-20882912 None:intergenic 25.0%
! TGTGATAAAAGTAAGAGATA+AGG + chr1_1:20882894-20882913 None:intergenic 25.0%
! AGGAACTGTATAGTATAATA+TGG + chr1_1:20883215-20883234 None:intergenic 25.0%
!!! TTTCCATACAGTTTTTCAAA+AGG + chr1_1:20883235-20883254 None:intergenic 25.0%
!!! ACATTTTAGAAGTTTGTGAT+AGG - chr1_1:20883272-20883291 Msa0013540:CDS 25.0%
!!! TATTAGGGCCATTTATTTTA+CGG - chr1_1:20883544-20883563 Msa0013540:intron 25.0%
! TACTAACTCAATGAAACTAA+AGG + chr1_1:20883630-20883649 None:intergenic 25.0%
! TCCAAAAAGGAAAAATAACA+GGG + chr1_1:20883958-20883977 None:intergenic 25.0%
! ATCCAAAAAGGAAAAATAAC+AGG + chr1_1:20883959-20883978 None:intergenic 25.0%
! GGAAAAATGATCAAACTTAA+AGG + chr1_1:20884355-20884374 None:intergenic 25.0%
! TAAAACTTAAAGGACTAATC+CGG + chr1_1:20884376-20884395 None:intergenic 25.0%
! TCATGGTAGTAATACTAATA+TGG - chr1_1:20884614-20884633 Msa0013540:CDS 25.0%
! CATGGTAGTAATACTAATAT+GGG - chr1_1:20884615-20884634 Msa0013540:CDS 25.0%
! GTAATACTAATATGGGAAAA+TGG - chr1_1:20884622-20884641 Msa0013540:CDS 25.0%
! TGTAACATAAATGACCAATT+AGG - chr1_1:20884707-20884726 Msa0013540:CDS 25.0%
! GTAACATAAATGACCAATTA+GGG - chr1_1:20884708-20884727 Msa0013540:CDS 25.0%
!!! TTAGGTTTTTTTTCCCTAAT+TGG + chr1_1:20884724-20884743 None:intergenic 25.0%
! ATTAGGGAAAAAAAACCTAA+AGG - chr1_1:20884724-20884743 Msa0013540:CDS 25.0%
CGATAATATCCTTGATGAAT+TGG - chr1_1:20879353-20879372 Msa0013540:intron 30.0%
GAGGTTTATTATAGATGATG+AGG - chr1_1:20879434-20879453 Msa0013540:intron 30.0%
TTCAACTGAAGATGAAATTG+AGG - chr1_1:20879497-20879516 Msa0013540:intron 30.0%
TAGAATTGTTACTCAGGTAA+TGG - chr1_1:20879665-20879684 Msa0013540:intron 30.0%
!! TTTTTGGTGGTTTTCAGTTA+TGG - chr1_1:20879713-20879732 Msa0013540:intron 30.0%
!! AGTTATGGAGTTTGATTTGA+GGG - chr1_1:20879728-20879747 Msa0013540:intron 30.0%
!! TTGATTTGAGGGGTTTTTAT+AGG - chr1_1:20879739-20879758 Msa0013540:intron 30.0%
! ATTGGAGGAGGTAAATTTTT+AGG - chr1_1:20879869-20879888 Msa0013540:intron 30.0%
! TTGGAGGAGGTAAATTTTTA+GGG - chr1_1:20879870-20879889 Msa0013540:intron 30.0%
! TGTGACTATTTTATGTGATG+TGG - chr1_1:20879995-20880014 Msa0013540:CDS 30.0%
!! AAGATTTCTGGTTATCACTA+TGG - chr1_1:20880284-20880303 Msa0013540:CDS 30.0%
AATCCATAATGAAATCACAG+TGG + chr1_1:20880405-20880424 None:intergenic 30.0%
CATTATGGATTTCTCAATCT+TGG - chr1_1:20880414-20880433 Msa0013540:intron 30.0%
!! GCTTTCAAGTTTGTGTTTAT+TGG - chr1_1:20880491-20880510 Msa0013540:intron 30.0%
!!! GTGATTTTTTTGAAGCTTTG+TGG - chr1_1:20880540-20880559 Msa0013540:intron 30.0%
!!! AAGCTTTGTGGTTTTGATTA+TGG - chr1_1:20880552-20880571 Msa0013540:CDS 30.0%
! TTTTCTGTCCTTCAATATCA+CGG - chr1_1:20880904-20880923 Msa0013540:intron 30.0%
! TAAGTAGCACAAAAGTATAG+AGG + chr1_1:20881047-20881066 None:intergenic 30.0%
! ACTTATATGACGCTTTTCAT+AGG - chr1_1:20881062-20881081 Msa0013540:intron 30.0%
TGAAGGACAAAAATAGCTTT+AGG - chr1_1:20881196-20881215 Msa0013540:intron 30.0%
!! ACATGTAGATCATTTTGAAG+AGG + chr1_1:20881282-20881301 None:intergenic 30.0%
ATGTATAACTTAGTGTTGTG+TGG - chr1_1:20881302-20881321 Msa0013540:intron 30.0%
AGCCATTATTACTGTGTATA+AGG - chr1_1:20881736-20881755 Msa0013540:intron 30.0%
!! GAATCATTTTGATCATTGTG+GGG + chr1_1:20881844-20881863 None:intergenic 30.0%
!! GAGAATCATTTTGATCATTG+TGG + chr1_1:20881846-20881865 None:intergenic 30.0%
!!! TTACGTTTGGTTTTAAGCAA+TGG - chr1_1:20882120-20882139 Msa0013540:intron 30.0%
!!! TACGTTTGGTTTTAAGCAAT+GGG - chr1_1:20882121-20882140 Msa0013540:intron 30.0%
AATCATTTAGGAAGAAGAGA+TGG - chr1_1:20882178-20882197 Msa0013540:intron 30.0%
TTCTGTGTAAATTGTGTCTT+GGG + chr1_1:20882502-20882521 None:intergenic 30.0%
TAGTTGAGAAGTTTCTTGAA+AGG - chr1_1:20882591-20882610 Msa0013540:intron 30.0%
!!! GTGCTATTTCTGTTTTTGAA+TGG - chr1_1:20882669-20882688 Msa0013540:intron 30.0%
AAAAGAATTCTACAGTAGCA+GGG + chr1_1:20882962-20882981 None:intergenic 30.0%
TAAAAGAATTCTACAGTAGC+AGG + chr1_1:20882963-20882982 None:intergenic 30.0%
AAGGCTAAATGGAATATTCA+TGG + chr1_1:20882989-20883008 None:intergenic 30.0%
TTTCATATGATCAAAACCTC+CGG - chr1_1:20883181-20883200 Msa0013540:CDS 30.0%
GTATAATATGGATGAAACAC+CGG + chr1_1:20883203-20883222 None:intergenic 30.0%
!! GTTCCTTTTGAAAAACTGTA+TGG - chr1_1:20883229-20883248 Msa0013540:CDS 30.0%
!!! TTTTTTCCTTTTGTTTTCCC+TGG + chr1_1:20883319-20883338 None:intergenic 30.0%
CCTGTAACAAATTCATTACA+AGG + chr1_1:20883410-20883429 None:intergenic 30.0%
!! CCTTGTAATGAATTTGTTAC+AGG - chr1_1:20883407-20883426 Msa0013540:intron 30.0%
TCTTCAGAAGCAAAAATATC+AGG + chr1_1:20883462-20883481 None:intergenic 30.0%
AGTCGTATGAAGTCTATATT+AGG - chr1_1:20883528-20883547 Msa0013540:intron 30.0%
GTCGTATGAAGTCTATATTA+GGG - chr1_1:20883529-20883548 Msa0013540:intron 30.0%
TAATTATTTATTTGCCGTCG+AGG + chr1_1:20883878-20883897 None:intergenic 30.0%
!!! ACCCTGTTATTTTTCCTTTT+TGG - chr1_1:20883954-20883973 Msa0013540:intron 30.0%
TAAATTCGCCTAATCAACAA+GGG + chr1_1:20884046-20884065 None:intergenic 30.0%
ATAAATTCGCCTAATCAACA+AGG + chr1_1:20884047-20884066 None:intergenic 30.0%
TAGGCGAATTTATAATGATG+AGG - chr1_1:20884054-20884073 Msa0013540:intron 30.0%
TGAACATACTGTTGAAAGAT+GGG + chr1_1:20884232-20884251 None:intergenic 30.0%
TTGAACATACTGTTGAAAGA+TGG + chr1_1:20884233-20884252 None:intergenic 30.0%
TAAAATTGTCTGTTGCAATG+AGG - chr1_1:20884284-20884303 Msa0013540:intron 30.0%
GTAAGATAAAGGACCATATT+GGG + chr1_1:20884404-20884423 None:intergenic 30.0%
TGTAAGATAAAGGACCATAT+TGG + chr1_1:20884405-20884424 None:intergenic 30.0%
GCAAACAGATTGTAAGATAA+AGG + chr1_1:20884415-20884434 None:intergenic 30.0%
TCAACAACAATTAGTGAAAC+CGG - chr1_1:20884458-20884477 Msa0013540:intron 30.0%
ATTTATTGCAGTAGTAGACA+GGG + chr1_1:20884504-20884523 None:intergenic 30.0%
AATTTATTGCAGTAGTAGAC+AGG + chr1_1:20884505-20884524 None:intergenic 30.0%
!! AAGTCCTTTAAGTGGATTAT+GGG + chr1_1:20884532-20884551 None:intergenic 30.0%
! TTTTACCTTGTATTTGCAAG+AGG - chr1_1:20884905-20884924 Msa0013540:CDS 30.0%
TAATAGAAAGATTCGAGAGG+CGG + chr1_1:20879249-20879268 None:intergenic 35.0%
TATAGATGATGAGGATGAAG+AGG - chr1_1:20879443-20879462 Msa0013540:intron 35.0%
ATCTTCATTTGCGTCTTCAA+TGG + chr1_1:20879526-20879545 None:intergenic 35.0%
AGACGCAAATGAAGATGATT+TGG - chr1_1:20879530-20879549 Msa0013540:intron 35.0%
!! GCAAATGAAGATGATTTGGT+TGG - chr1_1:20879534-20879553 Msa0013540:intron 35.0%
TTCGGAAGTTGAATCTTCTT+CGG - chr1_1:20879641-20879660 Msa0013540:intron 35.0%
TTCGGTTAGAATTGTTACTC+AGG - chr1_1:20879659-20879678 Msa0013540:intron 35.0%
! TGTTACTCAGGTAATGGTTA+TGG - chr1_1:20879671-20879690 Msa0013540:intron 35.0%
!! CAGTTATGGAGTTTGATTTG+AGG - chr1_1:20879727-20879746 Msa0013540:intron 35.0%
!! GTTATGGAGTTTGATTTGAG+GGG - chr1_1:20879729-20879748 Msa0013540:intron 35.0%
!!! TAGGGTTTTTGGTTACATTG+CGG - chr1_1:20879888-20879907 Msa0013540:intron 35.0%
TGTTCCAACAAACACAAACT+CGG + chr1_1:20880232-20880251 None:intergenic 35.0%
TATCACTATGGTACACTGTT+TGG - chr1_1:20880296-20880315 Msa0013540:CDS 35.0%
ATCACTATGGTACACTGTTT+GGG - chr1_1:20880297-20880316 Msa0013540:CDS 35.0%
CATCATTGGATTCATTGTTG+TGG - chr1_1:20880442-20880461 Msa0013540:intron 35.0%
TTGTGCTTTACTGTTTAGCA+TGG - chr1_1:20880583-20880602 Msa0013540:CDS 35.0%
!!! TGCTTCTGTTTTGGAAAACT+GGG - chr1_1:20880852-20880871 Msa0013540:intron 35.0%
!!! TGTTTTGGAAAACTGGGAAA+GGG - chr1_1:20880858-20880877 Msa0013540:intron 35.0%
TATTGAAGGACAGAAAAGGA+CGG + chr1_1:20880901-20880920 None:intergenic 35.0%
GTGATATTGAAGGACAGAAA+AGG + chr1_1:20880905-20880924 None:intergenic 35.0%
TTTCTGTCCTTCAATATCAC+GGG - chr1_1:20880905-20880924 Msa0013540:intron 35.0%
AGAAGAACATTAAATGGAGG+AGG + chr1_1:20880985-20881004 None:intergenic 35.0%
ACGAGAAGAACATTAAATGG+AGG + chr1_1:20880988-20881007 None:intergenic 35.0%
CAGACGAGAAGAACATTAAA+TGG + chr1_1:20880991-20881010 None:intergenic 35.0%
!! AGGACAAAAATAGCTTTAGG+TGG - chr1_1:20881199-20881218 Msa0013540:intron 35.0%
CAAGTTACTGAACAAATCAC+TGG - chr1_1:20881347-20881366 Msa0013540:intron 35.0%
TTAAGACTTAGCAGAGTAGA+AGG + chr1_1:20881491-20881510 None:intergenic 35.0%
GGATACGTCCAACTATAAAA+AGG + chr1_1:20881582-20881601 None:intergenic 35.0%
TTGAGAATCGGAATGAAACA+TGG + chr1_1:20881603-20881622 None:intergenic 35.0%
AGGAATGAAGGGAAAATTCA+AGG - chr1_1:20881709-20881728 Msa0013540:intron 35.0%
GGAAATATGGAAACAGAAAG+TGG - chr1_1:20881757-20881776 Msa0013540:intron 35.0%
TGAAGCAAAATTCCTCTAAG+AGG - chr1_1:20881790-20881809 Msa0013540:intron 35.0%
TTGTTGGGAATCAGCAAAAT+AGG - chr1_1:20881958-20881977 Msa0013540:intron 35.0%
GAAATCTGTTAGTTGTGGAA+AGG + chr1_1:20881986-20882005 None:intergenic 35.0%
AAAGGAAATGTGTATGTGGT+GGG + chr1_1:20882031-20882050 None:intergenic 35.0%
TAGGAAAGGAAATGTGTATG+TGG + chr1_1:20882035-20882054 None:intergenic 35.0%
! AAAAAGAGCATGTGTAGGAA+AGG + chr1_1:20882049-20882068 None:intergenic 35.0%
! TGAAGAAAAAGAGCATGTGT+AGG + chr1_1:20882054-20882073 None:intergenic 35.0%
!! TGATTTTGAGAGAAGTGAGT+AGG - chr1_1:20882225-20882244 Msa0013540:intron 35.0%
!!! GAAGTGAGTAGGATTTTTTC+AGG - chr1_1:20882236-20882255 Msa0013540:intron 35.0%
!!! GTAGGATTTTTTCAGGTTTG+AGG - chr1_1:20882243-20882262 Msa0013540:intron 35.0%
GTAGGTTTATTGCTTAAGAG+AGG - chr1_1:20882331-20882350 Msa0013540:intron 35.0%
TCTAGAGACTTGTGTAATCT+AGG + chr1_1:20882390-20882409 None:intergenic 35.0%
GTTCTGTGTAAATTGTGTCT+TGG + chr1_1:20882503-20882522 None:intergenic 35.0%
!! AAGGAGTGGATTTTGTTACA+AGG - chr1_1:20882610-20882629 Msa0013540:intron 35.0%
!! ATGTGGTTCTGAATTCTGAT+AGG - chr1_1:20882733-20882752 Msa0013540:intron 35.0%
AATCTGTCATCTCTATCTGT+TGG - chr1_1:20883345-20883364 Msa0013540:CDS 35.0%
TTCATTACAAGGCTTACTTC+AGG + chr1_1:20883399-20883418 None:intergenic 35.0%
!! TGAATTTGTTACAGGAGCTA+TGG - chr1_1:20883415-20883434 Msa0013540:intron 35.0%
ACTTGTTCGAAAAACACAGA+AGG - chr1_1:20883593-20883612 Msa0013540:CDS 35.0%
!! TTATTTTGTTCAGTTCCGCA+AGG - chr1_1:20883895-20883914 Msa0013540:CDS 35.0%
GAAGCTGTGTTAATCCAAAA+AGG + chr1_1:20883971-20883990 None:intergenic 35.0%
TTTCAGAGTAGAAGATTACC+CGG + chr1_1:20884189-20884208 None:intergenic 35.0%
GAACATACTGTTGAAAGATG+GGG + chr1_1:20884231-20884250 None:intergenic 35.0%
! GACATAATTTTGCACCAGTA+GGG + chr1_1:20884326-20884345 None:intergenic 35.0%
! AGACATAATTTTGCACCAGT+AGG + chr1_1:20884327-20884346 None:intergenic 35.0%
!! AGTCCTTTAAGTGGATTATG+GGG + chr1_1:20884531-20884550 None:intergenic 35.0%
!! CAAGTCCTTTAAGTGGATTA+TGG + chr1_1:20884533-20884552 None:intergenic 35.0%
CATAATCCACTTAAAGGACT+TGG - chr1_1:20884531-20884550 Msa0013540:CDS 35.0%
ACAATTCCAAGTCCTTTAAG+TGG + chr1_1:20884540-20884559 None:intergenic 35.0%
! TTTAAGTTTGACCAGTTTCC+TGG + chr1_1:20884756-20884775 None:intergenic 35.0%
AGGAAACTGGTCAAACTTAA+AGG - chr1_1:20884755-20884774 Msa0013540:CDS 35.0%
! TAACGAATCCAACTCTTTTC+TGG + chr1_1:20884867-20884886 None:intergenic 35.0%
TGAATCCTCTTGCAAATACA+AGG + chr1_1:20884913-20884932 None:intergenic 35.0%
! ATTGTTGTTGTTGTTGAAGG+TGG + chr1_1:20884954-20884973 None:intergenic 35.0%
ACCTTCAACAACAACAACAA+TGG - chr1_1:20884953-20884972 Msa0013540:CDS 35.0%
CCTTCAACAACAACAACAAT+GGG - chr1_1:20884954-20884973 Msa0013540:CDS 35.0%
CTTCAACAACAACAACAATG+GGG - chr1_1:20884955-20884974 Msa0013540:CDS 35.0%
TTCAACAACAACAACAATGG+GGG - chr1_1:20884956-20884975 Msa0013540:CDS 35.0%
ACTAGACCTAAAGGCTAAAA+GGG + chr1_1:20885003-20885022 None:intergenic 35.0%
AACTAGACCTAAAGGCTAAA+AGG + chr1_1:20885004-20885023 None:intergenic 35.0%
TCGGAGATTTCGTATAACTC+GGG + chr1_1:20879162-20879181 None:intergenic 40.0%
GTCGGAGATTTCGTATAACT+CGG + chr1_1:20879163-20879182 None:intergenic 40.0%
!!! GGTCGTTTTAAAACACGTGA+GGG + chr1_1:20879213-20879232 None:intergenic 40.0%
!!! AGGTCGTTTTAAAACACGTG+AGG + chr1_1:20879214-20879233 None:intergenic 40.0%
CAGCATCATCCAATTCATCA+AGG + chr1_1:20879365-20879384 None:intergenic 40.0%
TCTATAATAAACCTCCGTCC+AGG + chr1_1:20879429-20879448 None:intergenic 40.0%
GAGTTGAAAGGAGAGTTGTT+TGG - chr1_1:20879591-20879610 Msa0013540:intron 40.0%
TGCGGTTTGTGATAGGTATT+CGG - chr1_1:20879623-20879642 Msa0013540:intron 40.0%
! GATGATGTTGATGTTGCTTG+TGG - chr1_1:20879761-20879780 Msa0013540:intron 40.0%
CGGTTGAAAATTCGAATCCT+CGG + chr1_1:20879789-20879808 None:intergenic 40.0%
! AGCTGATACGGCTTTAACAA+CGG + chr1_1:20879809-20879828 None:intergenic 40.0%
TTAAAGCCGTATCAGCTTGT+CGG - chr1_1:20879812-20879831 Msa0013540:intron 40.0%
TTAACACCGACAAGCTGATA+CGG + chr1_1:20879821-20879840 None:intergenic 40.0%
TTGTTGTATCGGAAGAGGAT+TGG - chr1_1:20879851-20879870 Msa0013540:intron 40.0%
TGCGGTGAATTTGAATTTCG+TGG - chr1_1:20879906-20879925 Msa0013540:intron 40.0%
ATGCCTTAGATCAGAAGTGA+CGG - chr1_1:20880174-20880193 Msa0013540:intron 40.0%
GTTCCAACAAACACAAACTC+GGG + chr1_1:20880231-20880250 None:intergenic 40.0%
! TGGTACACTGTTTGGGATTT+AGG - chr1_1:20880304-20880323 Msa0013540:CDS 40.0%
! GGTACACTGTTTGGGATTTA+GGG - chr1_1:20880305-20880324 Msa0013540:CDS 40.0%
! GTACACTGTTTGGGATTTAG+GGG - chr1_1:20880306-20880325 Msa0013540:CDS 40.0%
! TTGGGATTTAGGGGTTAGTA+TGG - chr1_1:20880315-20880334 Msa0013540:CDS 40.0%
! GTGCCACTGTGATTTCATTA+TGG - chr1_1:20880399-20880418 Msa0013540:CDS 40.0%
CATGTGTCATACAGCCATAT+TGG - chr1_1:20880638-20880657 Msa0013540:CDS 40.0%
AGCCATATTGGCAGATGAAA+TGG - chr1_1:20880650-20880669 Msa0013540:CDS 40.0%
GCCATATTGGCAGATGAAAT+GGG - chr1_1:20880651-20880670 Msa0013540:CDS 40.0%
AATCACTTGCACAACGATTC+TGG - chr1_1:20880808-20880827 Msa0013540:CDS 40.0%
GCAGGACAAACTATAAGATG+TGG + chr1_1:20880835-20880854 None:intergenic 40.0%
! AGTTTGTCCTGCTTCTGTTT+TGG - chr1_1:20880843-20880862 Msa0013540:CDS 40.0%
! CAGTTTTCCAAAACAGAAGC+AGG + chr1_1:20880853-20880872 None:intergenic 40.0%
!!! CTGCTTCTGTTTTGGAAAAC+TGG - chr1_1:20880851-20880870 Msa0013540:CDS 40.0%
!!! CTGTTTTGGAAAACTGGGAA+AGG - chr1_1:20880857-20880876 Msa0013540:intron 40.0%
ATTGAAGGACAGAAAAGGAC+GGG + chr1_1:20880900-20880919 None:intergenic 40.0%
TTGAATTCCTTGTCCAAGTC+AGG - chr1_1:20880955-20880974 Msa0013540:intron 40.0%
!! ATTCACTTTTCGAACGACAC+AGG - chr1_1:20881013-20881032 Msa0013540:intron 40.0%
ATCGTAAAATCCTGAAGCGT+TGG - chr1_1:20881136-20881155 Msa0013540:intron 40.0%
TTAGCAGAGTAGAAGGTAAG+TGG + chr1_1:20881484-20881503 None:intergenic 40.0%
GTTTCATTCCGATTCTCAAG+TGG - chr1_1:20881604-20881623 Msa0013540:intron 40.0%
!! ATTTTGATCATTGTGGGGTC+TGG + chr1_1:20881839-20881858 None:intergenic 40.0%
TGACGTGAATATGAGGTAAG+CGG + chr1_1:20881886-20881905 None:intergenic 40.0%
GTGGAAATGACGTGAATATG+AGG + chr1_1:20881893-20881912 None:intergenic 40.0%
GAGTAAGATGCAAGAATCAG+TGG + chr1_1:20881912-20881931 None:intergenic 40.0%
TGCAATGTGTCCTGTTTGTT+GGG - chr1_1:20881943-20881962 Msa0013540:intron 40.0%
!! TTTGCTGATTCCCAACAAAC+AGG + chr1_1:20881956-20881975 None:intergenic 40.0%
GGAAGGAAATCTGTTAGTTG+TGG + chr1_1:20881991-20882010 None:intergenic 40.0%
GAAAGGAAATGTGTATGTGG+TGG + chr1_1:20882032-20882051 None:intergenic 40.0%
ACTGTGTGATACATCCTCAT+GGG - chr1_1:20882073-20882092 Msa0013540:intron 40.0%
!!! GTTTGGTTTTAAGCAATGGG+TGG - chr1_1:20882124-20882143 Msa0013540:intron 40.0%
!! GTTTTAAGCAATGGGTGGAT+GGG - chr1_1:20882129-20882148 Msa0013540:intron 40.0%
!! TTCAGGTTTGAGGCTTTTAG+AGG - chr1_1:20882253-20882272 Msa0013540:intron 40.0%
GAGAAGTTTCTTGAAAGGAG+TGG - chr1_1:20882596-20882615 Msa0013540:intron 40.0%
GAATTTGATGCCTTTGGACA+AGG + chr1_1:20882849-20882868 None:intergenic 40.0%
AATTCTACAGTAGCAGGGAA+AGG + chr1_1:20882957-20882976 None:intergenic 40.0%
TAATATGGATGAAACACCGG+AGG + chr1_1:20883200-20883219 None:intergenic 40.0%
GATAGAGATGACAGATTGAC+AGG + chr1_1:20883342-20883361 None:intergenic 40.0%
!!! TCTCTATCTGTTGGTTTTGC+TGG - chr1_1:20883354-20883373 Msa0013540:CDS 40.0%
! TTCAGGCGCCGTAAAATAAA+TGG + chr1_1:20883555-20883574 None:intergenic 40.0%
GCAGGTTCAATATGTCGTAA+TGG - chr1_1:20883739-20883758 Msa0013540:intron 40.0%
! TGTCGTAATGGAAAAGCAAC+AGG - chr1_1:20883751-20883770 Msa0013540:intron 40.0%
TTCTTGAAGTTCTACCTCGA+CGG - chr1_1:20883861-20883880 Msa0013540:CDS 40.0%
! GATGGTTTGCAATCTGGAAT+AGG + chr1_1:20884024-20884043 None:intergenic 40.0%
! CAAACCATCCCTTGTTGATT+AGG - chr1_1:20884035-20884054 Msa0013540:intron 40.0%
!! TCAAAGCCAAAAGCACCTAT+TGG + chr1_1:20884109-20884128 None:intergenic 40.0%
ACAATGACTTCTCCATTCAC+CGG - chr1_1:20884167-20884186 Msa0013540:intron 40.0%
CTGGTGCAAAATTATGTCTG+CGG - chr1_1:20884328-20884347 Msa0013540:CDS 40.0%
AGAGTGAGACAAAGGACTAT+CGG + chr1_1:20884439-20884458 None:intergenic 40.0%
TGTTGTTGAGAGTGAGACAA+AGG + chr1_1:20884447-20884466 None:intergenic 40.0%
!! GTCCTTTAAGTGGATTATGG+GGG + chr1_1:20884530-20884549 None:intergenic 40.0%
AATCAACTTGACTGTGCTCT+TGG - chr1_1:20884574-20884593 Msa0013540:CDS 40.0%
AAAACCTAAAGGACCAATCC+AGG - chr1_1:20884735-20884754 Msa0013540:CDS 40.0%
AAAGGGATCCAGAAAAGAGT+TGG - chr1_1:20884856-20884875 Msa0013540:CDS 40.0%
! CCCATTGTTGTTGTTGTTGA+AGG + chr1_1:20884957-20884976 None:intergenic 40.0%
GAAACGGTTACTGAAGAAGG+AGG + chr1_1:20879297-20879316 None:intergenic 45.0%
TCGGAAACGGTTACTGAAGA+AGG + chr1_1:20879300-20879319 None:intergenic 45.0%
GGATGATGCTGAATGTGATG+CGG - chr1_1:20879374-20879393 Msa0013540:intron 45.0%
GATGATGAGGATGAAGAGGA+TGG - chr1_1:20879447-20879466 Msa0013540:intron 45.0%
AGGATTTCGGTGGAGTTGAA+AGG - chr1_1:20879579-20879598 Msa0013540:intron 45.0%
!! GGAGAGTTGTTTGGTTCTTC+TGG - chr1_1:20879600-20879619 Msa0013540:intron 45.0%
!! GTTGTTTGGTTCTTCTGGTG+CGG - chr1_1:20879605-20879624 Msa0013540:intron 45.0%
TGCTGTTGTTGTATCGGAAG+AGG - chr1_1:20879846-20879865 Msa0013540:intron 45.0%
TTGTATCGGAAGAGGATTGG+AGG - chr1_1:20879854-20879873 Msa0013540:intron 45.0%
TCTATGCAGCAACACATGCA+CGG - chr1_1:20879947-20879966 Msa0013540:intron 45.0%
!! TGGTGTTGCATTCATTGTCG+TGG - chr1_1:20880015-20880034 Msa0013540:CDS 45.0%
TGTCAGTATTGTGTCCGTGT+CGG - chr1_1:20880136-20880155 Msa0013540:intron 45.0%
!! CAATCTTGGTGCTGCATCAT+TGG - chr1_1:20880428-20880447 Msa0013540:intron 45.0%
GCCCATTTCATCTGCCAATA+TGG + chr1_1:20880655-20880674 None:intergenic 45.0%
TGAAATGGGCCTTGGCAAAA+CGG - chr1_1:20880665-20880684 Msa0013540:CDS 45.0%
GGGAAAGGGAACTAAAGAAG+TGG - chr1_1:20880872-20880891 Msa0013540:intron 45.0%
!! AAATCCTGAAGCGTTGGAAG+TGG - chr1_1:20881142-20881161 Msa0013540:intron 45.0%
ACTCAATTCGTCGCTGAAGT+CGG - chr1_1:20881452-20881471 Msa0013540:intron 45.0%
TGAATATGAGGTAAGCGGTG+GGG + chr1_1:20881881-20881900 None:intergenic 45.0%
GTGAATATGAGGTAAGCGGT+GGG + chr1_1:20881882-20881901 None:intergenic 45.0%
CTGCAATGTGTCCTGTTTGT+TGG - chr1_1:20881942-20881961 Msa0013540:intron 45.0%
CACTGTGTGATACATCCTCA+TGG - chr1_1:20882072-20882091 Msa0013540:intron 45.0%
TGGGCCCATTACATTACGTT+TGG - chr1_1:20882107-20882126 Msa0013540:intron 45.0%
!!! GGTTTTAAGCAATGGGTGGA+TGG - chr1_1:20882128-20882147 Msa0013540:intron 45.0%
TTTGATGCCTTTGGACAAGG+AGG + chr1_1:20882846-20882865 None:intergenic 45.0%
CAGGGAGAATTTGATGCCTT+TGG + chr1_1:20882855-20882874 None:intergenic 45.0%
GGGTAGAGAATTCGAAGACA+GGG + chr1_1:20882873-20882892 None:intergenic 45.0%
AGGGTAGAGAATTCGAAGAC+AGG + chr1_1:20882874-20882893 None:intergenic 45.0%
TGTAGTAACAGCTACTGCCA+GGG - chr1_1:20883299-20883318 Msa0013540:CDS 45.0%
CTACTGCCAGGGAAAACAAA+AGG - chr1_1:20883310-20883329 Msa0013540:CDS 45.0%
ACAGGAGCTATGGTCTATGT+TGG - chr1_1:20883425-20883444 Msa0013540:intron 45.0%
GCTGCATCACATCAGATTTC+AGG + chr1_1:20883572-20883591 None:intergenic 45.0%
! AAGACACACTGTGTTACTGC+AGG - chr1_1:20883721-20883740 Msa0013540:intron 45.0%
GCAACAGGAACATGCTTACA+AGG - chr1_1:20883766-20883785 Msa0013540:intron 45.0%
!! ATCGTGCTGTTTCACAAGCT+CGG - chr1_1:20883804-20883823 Msa0013540:intron 45.0%
GTACAAAAGAGCGAACCTTG+CGG + chr1_1:20883913-20883932 None:intergenic 45.0%
! ACAAGGGATGGTTTGCAATC+TGG + chr1_1:20884030-20884049 None:intergenic 45.0%
TTCGCCTAATCAACAAGGGA+TGG + chr1_1:20884042-20884061 None:intergenic 45.0%
AGGATGTTGTTCGCTTTGCT+AGG - chr1_1:20884074-20884093 Msa0013540:intron 45.0%
! CTGCATCCAATAGGTGCTTT+TGG - chr1_1:20884100-20884119 Msa0013540:intron 45.0%
CAATGACTTCTCCATTCACC+GGG - chr1_1:20884168-20884187 Msa0013540:intron 45.0%
GTAGAAGATTACCCGGTGAA+TGG + chr1_1:20884182-20884201 None:intergenic 45.0%
CCAGTAGGGTTAAGTAAACC+TGG + chr1_1:20884312-20884331 None:intergenic 45.0%
CCAGGTTTACTTAACCCTAC+TGG - chr1_1:20884309-20884328 Msa0013540:CDS 45.0%
GTCCCCCATAATCCACTTAA+AGG - chr1_1:20884525-20884544 Msa0013540:CDS 45.0%
!! GTTTCCTGGATTGGTCCTTT+AGG + chr1_1:20884742-20884761 None:intergenic 45.0%
AAAGGACCAATCCAGGAAAC+TGG - chr1_1:20884742-20884761 Msa0013540:CDS 45.0%
GTTTGACCAGTTTCCTGGAT+TGG + chr1_1:20884751-20884770 None:intergenic 45.0%
GTTAGCCAAAATCACGTCTG+CGG + chr1_1:20884782-20884801 None:intergenic 45.0%
TTATAGAGCTCCCTCCACAA+AGG - chr1_1:20884838-20884857 Msa0013540:CDS 45.0%
TATAGAGCTCCCTCCACAAA+GGG - chr1_1:20884839-20884858 Msa0013540:CDS 45.0%
TTTCTGGATCCCTTTGTGGA+GGG + chr1_1:20884851-20884870 None:intergenic 45.0%
! TTTTCTGGATCCCTTTGTGG+AGG + chr1_1:20884852-20884871 None:intergenic 45.0%
! CTCTTTTCTGGATCCCTTTG+TGG + chr1_1:20884855-20884874 None:intergenic 45.0%
CTAAAGGCTAAAAGGGAGTG+GGG + chr1_1:20884996-20885015 None:intergenic 45.0%
CCTAAAGGCTAAAAGGGAGT+GGG + chr1_1:20884997-20885016 None:intergenic 45.0%
ACCTAAAGGCTAAAAGGGAG+TGG + chr1_1:20884998-20885017 None:intergenic 45.0%
ACGAAATCTCCGACGACGAA+TGG - chr1_1:20879169-20879188 Msa0013540:CDS 50.0%
CGAAATCTCCGACGACGAAT+GGG - chr1_1:20879170-20879189 Msa0013540:CDS 50.0%
GTGATTCTCCCATTCGTCGT+CGG + chr1_1:20879181-20879200 None:intergenic 50.0%
TAGAAAGATTCGAGAGGCGG+AGG + chr1_1:20879246-20879265 None:intergenic 50.0%
GTTACTGAAGAAGGAGGAGG+AGG + chr1_1:20879291-20879310 None:intergenic 50.0%
ACGGTTACTGAAGAAGGAGG+AGG + chr1_1:20879294-20879313 None:intergenic 50.0%
TTCAACGCAATCGTCGTCGT+CGG + chr1_1:20879319-20879338 None:intergenic 50.0%
TGATGCTGAATGTGATGCGG+CGG - chr1_1:20879377-20879396 Msa0013540:intron 50.0%
GATGAGGATGAAGAGGATGG+TGG - chr1_1:20879450-20879469 Msa0013540:intron 50.0%
! AAGCTTTGCAGAAGTGTGCG+AGG - chr1_1:20879559-20879578 Msa0013540:intron 50.0%
! GCAGAAGTGTGCGAGGATTT+CGG - chr1_1:20879566-20879585 Msa0013540:intron 50.0%
CTTCTGGTGCGGTTTGTGAT+AGG - chr1_1:20879616-20879635 Msa0013540:intron 50.0%
! TGATGTTGCTTGTGGTTCCG+AGG - chr1_1:20879769-20879788 Msa0013540:intron 50.0%
TATCGGAAGAGGATTGGAGG+AGG - chr1_1:20879857-20879876 Msa0013540:intron 50.0%
! TCTAAGGCATGCCTAGTGTC+CGG + chr1_1:20880164-20880183 None:intergenic 50.0%
GCTCCCGAGTTTGTGTTTGT+TGG - chr1_1:20880225-20880244 Msa0013540:intron 50.0%
TTGGCAGATGAAATGGGCCT+TGG - chr1_1:20880657-20880676 Msa0013540:CDS 50.0%
! ACACCTGAACCGTTTTGCCA+AGG + chr1_1:20880677-20880696 None:intergenic 50.0%
GTGCAGACCCGTGATATTGA+AGG + chr1_1:20880915-20880934 None:intergenic 50.0%
!! AGGCAATCCTGACTTGGACA+AGG + chr1_1:20880965-20880984 None:intergenic 50.0%
GGATGAGGCACATGCTTTGA+AGG - chr1_1:20881179-20881198 Msa0013540:intron 50.0%
AACCAACGCTTGATGCTGAC+AGG - chr1_1:20881252-20881271 Msa0013540:intron 50.0%
ACCAACGCTTGATGCTGACA+GGG - chr1_1:20881253-20881272 Msa0013540:intron 50.0%
AAGAGGAGTCCTCTTCCCTA+TGG - chr1_1:20881807-20881826 Msa0013540:intron 50.0%
TGGCTACTACCATAGGGAAG+AGG + chr1_1:20881819-20881838 None:intergenic 50.0%
CGTGAATATGAGGTAAGCGG+TGG + chr1_1:20881883-20881902 None:intergenic 50.0%
ACAGGACACATTGCAGCAGA+GGG + chr1_1:20881938-20881957 None:intergenic 50.0%
AACAGGACACATTGCAGCAG+AGG + chr1_1:20881939-20881958 None:intergenic 50.0%
GTGTGATACATCCTCATGGG+AGG - chr1_1:20882076-20882095 Msa0013540:intron 50.0%
CTCATGGGAGGTTCATGACT+GGG - chr1_1:20882088-20882107 Msa0013540:intron 50.0%
AATGGGTGGATGGGACTAAG+CGG - chr1_1:20882138-20882157 Msa0013540:intron 50.0%
GGACTAAGCGGCAAAAGTTG+AGG - chr1_1:20882150-20882169 Msa0013540:intron 50.0%
GAGACACTGCAGACTCTTAG+AGG - chr1_1:20882812-20882831 Msa0013540:intron 50.0%
TCTGCTTCCTCCTTGTCCAA+AGG - chr1_1:20882836-20882855 Msa0013540:intron 50.0%
TCTACAGTAGCAGGGAAAGG+CGG + chr1_1:20882954-20882973 None:intergenic 50.0%
GCAGTGCTGTGAAGGCTAAA+TGG + chr1_1:20883000-20883019 None:intergenic 50.0%
GTTAGGCAAGCAATAGTGCC+AGG + chr1_1:20883034-20883053 None:intergenic 50.0%
GTGTAGTAACAGCTACTGCC+AGG - chr1_1:20883298-20883317 Msa0013540:CDS 50.0%
TGCTTACAAGGAAGCCATCG+AGG - chr1_1:20883778-20883797 Msa0013540:intron 50.0%
AACAGCACGATACTCCTCGA+TGG + chr1_1:20883795-20883814 None:intergenic 50.0%
GCTAGGAAGCTGCATCCAAT+AGG - chr1_1:20884091-20884110 Msa0013540:intron 50.0%
GTCTGTTGCAATGAGGTTCC+AGG - chr1_1:20884291-20884310 Msa0013540:CDS 50.0%
! AAGGACCGCAGACGTGATTT+TGG - chr1_1:20884774-20884793 Msa0013540:CDS 50.0%
! TCCTGTGCTACTGACAAGCA+GGG + chr1_1:20884804-20884823 None:intergenic 50.0%
!! CCCACTCCCTTTTAGCCTTT+AGG - chr1_1:20884994-20885013 Msa0013540:exon 50.0%
AAAGATTCGAGAGGCGGAGG+AGG + chr1_1:20879243-20879262 None:intergenic 55.0%
ACTGAAGAAGGAGGAGGAGG+AGG + chr1_1:20879288-20879307 None:intergenic 55.0%
GCAATCGTCGTCGTCGGAAA+CGG + chr1_1:20879313-20879332 None:intergenic 55.0%
! GAGGATGAAGAGGATGGTGG+TGG - chr1_1:20879453-20879472 Msa0013540:intron 55.0%
!! TGAAGAGGATGGTGGTGGTG+TGG - chr1_1:20879458-20879477 Msa0013540:intron 55.0%
GAAGTGTGCGAGGATTTCGG+TGG - chr1_1:20879569-20879588 Msa0013540:intron 55.0%
TATTGTGTCCGTGTCGGACC+CGG - chr1_1:20880142-20880161 Msa0013540:intron 55.0%
CTAAGGCATGCCTAGTGTCC+GGG + chr1_1:20880163-20880182 None:intergenic 55.0%
GCGCCGTCACTTCTGATCTA+AGG + chr1_1:20880180-20880199 None:intergenic 55.0%
TGGAGGAGGCAATCCTGACT+TGG + chr1_1:20880971-20880990 None:intergenic 55.0%
AGCTCCACTTCCAACGCTTC+AGG + chr1_1:20881149-20881168 None:intergenic 55.0%
GAAGTGGAGCTGTGTGCTGA+TGG - chr1_1:20881158-20881177 Msa0013540:intron 55.0%
! GAGCTGTGTGCTGATGGATG+AGG - chr1_1:20881164-20881183 Msa0013540:intron 55.0%
TCCCTGTCAGCATCAAGCGT+TGG + chr1_1:20881257-20881276 None:intergenic 55.0%
GGGAAGAGGACTCCTCTTAG+AGG + chr1_1:20881805-20881824 None:intergenic 55.0%
GGGGTCTGGCTACTACCATA+GGG + chr1_1:20881825-20881844 None:intergenic 55.0%
TGGGGTCTGGCTACTACCAT+AGG + chr1_1:20881826-20881845 None:intergenic 55.0%
ATGAGGTAAGCGGTGGGGAT+GGG + chr1_1:20881876-20881895 None:intergenic 55.0%
TATGAGGTAAGCGGTGGGGA+TGG + chr1_1:20881877-20881896 None:intergenic 55.0%
GACACATTGCAGCAGAGGGA+GGG + chr1_1:20881934-20881953 None:intergenic 55.0%
!! TGTGTATGTGGTGGGCTGAG+CGG + chr1_1:20882023-20882042 None:intergenic 55.0%
CCAGTCATGAACCTCCCATG+AGG + chr1_1:20882090-20882109 None:intergenic 55.0%
CCTCATGGGAGGTTCATGAC+TGG - chr1_1:20882087-20882106 Msa0013540:intron 55.0%
TACAGTAGCAGGGAAAGGCG+GGG + chr1_1:20882952-20882971 None:intergenic 55.0%
CTACAGTAGCAGGGAAAGGC+GGG + chr1_1:20882953-20882972 None:intergenic 55.0%
ATAGTGCCAGGTGTGCAGGT+AGG + chr1_1:20883022-20883041 None:intergenic 55.0%
AGCAATAGTGCCAGGTGTGC+AGG + chr1_1:20883026-20883045 None:intergenic 55.0%
ACCCTGCTTGTCAGTAGCAC+AGG - chr1_1:20884800-20884819 Msa0013540:CDS 55.0%
! GTCCTGTGCTACTGACAAGC+AGG + chr1_1:20884805-20884824 None:intergenic 55.0%
GAAGAAGGAGGAGGAGGAGG+TGG + chr1_1:20879285-20879304 None:intergenic 60.0%
TGCTGAATGTGATGCGGCGG+CGG - chr1_1:20879380-20879399 Msa0013540:intron 60.0%
CAGAAGTGACGGCGCTTCAG+AGG - chr1_1:20880185-20880204 Msa0013540:intron 60.0%
GGGCCTTGGCAAAACGGTTC+AGG - chr1_1:20880671-20880690 Msa0013540:CDS 60.0%
TGCACGCGCAGCATACTGCA+AGG - chr1_1:20880930-20880949 Msa0013540:intron 60.0%
TGAGGTAAGCGGTGGGGATG+GGG + chr1_1:20881875-20881894 None:intergenic 60.0%
GGACACATTGCAGCAGAGGG+AGG + chr1_1:20881935-20881954 None:intergenic 60.0%
GCAGGTAGGCAGTGCTGTGA+AGG + chr1_1:20883008-20883027 None:intergenic 60.0%
! ACCGGAAGCACGCAGCGATT+AGG - chr1_1:20884476-20884495 Msa0013540:intron 60.0%
CCCTAATCGCTGCGTGCTTC+CGG + chr1_1:20884480-20884499 None:intergenic 60.0%
! CCGGAAGCACGCAGCGATTA+GGG - chr1_1:20884477-20884496 Msa0013540:intron 60.0%
AGAGGCGGAGGAGGAGAACG+AGG + chr1_1:20879234-20879253 None:intergenic 65.0%
GGAGGAGGAGGAGGTGGTTG+CGG + chr1_1:20879279-20879298 None:intergenic 65.0%
CCTAGTGTCCGGGTCCGACA+CGG + chr1_1:20880153-20880172 None:intergenic 65.0%
GTAAGCGGTGGGGATGGGGA+GGG + chr1_1:20881871-20881890 None:intergenic 65.0%
CTGAGCGGAGCTGCAGTGGA+AGG + chr1_1:20882008-20882027 None:intergenic 65.0%
GTAGCAGGGAAAGGCGGGGA+TGG + chr1_1:20882948-20882967 None:intergenic 65.0%
GCACTGCCTACCTGCACACC+TGG - chr1_1:20883013-20883032 Msa0013540:CDS 65.0%
GGAGGAGGAGGTGGTTGCGG+TGG + chr1_1:20879276-20879295 None:intergenic 70.0%
CTCCGACGGCGAGACCTGGA+CGG - chr1_1:20879412-20879431 Msa0013540:intron 70.0%
CTCCGTCCAGGTCTCGCCGT+CGG + chr1_1:20879417-20879436 None:intergenic 70.0%
CCGTGTCGGACCCGGACACT+AGG - chr1_1:20880150-20880169 Msa0013540:intron 70.0%
GGTAAGCGGTGGGGATGGGG+AGG + chr1_1:20881872-20881891 None:intergenic 70.0%
TGGGCTGAGCGGAGCTGCAG+TGG + chr1_1:20882012-20882031 None:intergenic 70.0%
GGCGGCTGCTGCTGCTCCGA+CGG - chr1_1:20879398-20879417 Msa0013540:intron 75.0%
GCTGCTCCGACGGCGAGACC+TGG - chr1_1:20879408-20879427 Msa0013540:intron 75.0%
CGACGGCGAGACCTGGACGG+AGG - chr1_1:20879415-20879434 Msa0013540:intron 75.0%
AGCGGTGGGGATGGGGAGGG+CGG + chr1_1:20881868-20881887 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 20879139 20885025 20879139 ID=Msa0013540;Name=Msa0013540
chr1_1 mRNA 20879139 20885025 20879139 ID=Msa0013540-mRNA-1;Parent=Msa0013540;Name=Msa0013540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=14|0.5|0.63|0.90|1|1|11|0|712
chr1_1 exon 20879139 20879342 20879139 ID=Msa0013540-mRNA-1:exon:7450;Parent=Msa0013540-mRNA-1
chr1_1 exon 20879975 20880133 20879975 ID=Msa0013540-mRNA-1:exon:7449;Parent=Msa0013540-mRNA-1
chr1_1 exon 20880248 20880421 20880248 ID=Msa0013540-mRNA-1:exon:7448;Parent=Msa0013540-mRNA-1
chr1_1 exon 20880550 20880870 20880550 ID=Msa0013540-mRNA-1:exon:7447;Parent=Msa0013540-mRNA-1
chr1_1 exon 20882865 20883045 20882865 ID=Msa0013540-mRNA-1:exon:7446;Parent=Msa0013540-mRNA-1
chr1_1 exon 20883130 20883380 20883130 ID=Msa0013540-mRNA-1:exon:7445;Parent=Msa0013540-mRNA-1
chr1_1 exon 20883472 20883512 20883472 ID=Msa0013540-mRNA-1:exon:7444;Parent=Msa0013540-mRNA-1
chr1_1 exon 20883591 20883672 20883591 ID=Msa0013540-mRNA-1:exon:7443;Parent=Msa0013540-mRNA-1
chr1_1 exon 20883859 20883938 20883859 ID=Msa0013540-mRNA-1:exon:7442;Parent=Msa0013540-mRNA-1
chr1_1 exon 20884286 20884403 20884286 ID=Msa0013540-mRNA-1:exon:7441;Parent=Msa0013540-mRNA-1
chr1_1 exon 20884484 20885025 20884484 ID=Msa0013540-mRNA-1:exon:7440;Parent=Msa0013540-mRNA-1
chr1_1 five_prime_UTR 20885012 20885025 20885012 ID=Msa0013540-mRNA-1:five_prime_utr;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20884484 20885011 20884484 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20884286 20884403 20884286 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20883859 20883938 20883859 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20883591 20883672 20883591 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20883472 20883512 20883472 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20883130 20883380 20883130 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20882865 20883045 20882865 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20880550 20880870 20880550 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20880248 20880421 20880248 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20879975 20880133 20879975 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
chr1_1 CDS 20879139 20879342 20879139 ID=Msa0013540-mRNA-1:cds;Parent=Msa0013540-mRNA-1
Gene Sequence

>Msa0013540

ATGAAACCCGAGTTATACGAAATCTCCGACGACGAATGGGAGAATCACTCTTTCAAACCCTCACGTGTTTTAAAACGACCTCGTTCTCCTCCTCCGCCTCTCGAATCTTTCTATTATAAACCACCGCAACCACCTCCTCCTCCTCCTTCTTCAGTAACCGTTTCCGACGACGACGATTGCGTTGAAATAACGCGAAATACCGATAATATCCTTGATGAATTGGATGATGCTGAATGTGATGCGGCGGCGGCTGCTGCTGCTCCGACGGCGAGACCTGGACGGAGGTTTATTATAGATGATGAGGATGAAGAGGATGGTGGTGGTGTGGATTTGTATGAGATTGATTCAACTGAAGATGAAATTGAGGATGCCATTGAAGACGCAAATGAAGATGATTTGGTTGGTAAAGCTTTGCAGAAGTGTGCGAGGATTTCGGTGGAGTTGAAAGGAGAGTTGTTTGGTTCTTCTGGTGCGGTTTGTGATAGGTATTCGGAAGTTGAATCTTCTTCGGTTAGAATTGTTACTCAGGATGATGTTGATGTTGCTTGTGGTTCCGAGGATTCGAATTTTCAACCGTTGTTAAAGCCGTATCAGCTTGTCGGTGTTAATTTTTTGCTGTTGTTGTATCGGAAGAGGATTGGAGGAGCTCCCGAGTTTGTGTTTGTTGGAACATCATTGTGCAGTGCCACTGCTATTATGTTTTTAAGATTTCTGGTTATCACTATGCTTTCAAGTTTGTGTTTATTGGAGCATGATTGTGTGTATATTGCTACTGTGATTTTTTTGAAGCTTTGTGGTTTTGATTATGCCATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAACGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCCTTTTCTGTCCTTCAATATCACGGGTCTGCACGCGCAGCATACTGCAAGGAGTTGAATTCCTTGTCCAAGTCAGGATTGCCTCCTCCATTTAATGTTCTTCTCGTCTGTTATTCACTTTTCGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGATGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACGCCTCTTCAAAATGATCTACATGCTTGTGTAGTAACAGCTACTGCCAGGGAAAACAAAAGGAAAAAACCTGTCAATCTGTCATCTCTATCTGTTGGTTTTGCTGGTGTTAATATAAATATAATTCCTGAAGTAAGCCTTGTAATGAATTTGTTACAGGAGCTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTTAGTGCAGAAGATAAAGATTTAACTAGTCGTATGAAGTCTATATTAGGGCCATTTATTTTACGGCGCCTGAAATCTGATGTGATGCAGCAACTTGTTCGAAAAACACAGAAGGTTCAATATGTCGTAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATCGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAAGTTCTACCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCAAACCATCCCTTGTTGATTAGGCGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTGCATCCAATAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGGACGTTGAATTAGTTGTTATAGAGCTCCCTCCACAAAGGGATCCAGAAAAGAGTTGGATTCGTTATAGATCTTTTATAAGAAGTTTTACCTTGTATTTGCAAGAGGATTCAATCACTCAAACTACTACACCACCTTCAACAACAACAACAATGGGGGAAAAGCTTATATTGCCCCACTCCCTTTTAGCCTTTAGGTCTAGTTGA
Protein sequence

>Msa0013540

MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFYYKPPQPPPPPPSSVTVSDDDDCVEITRNTDNILDELDDAECDAAAAAAAPTARPGRRFIIDDEDEEDGGGVDLYEIDSTEDEIEDAIEDANEDDLVGKALQKCARISVELKGELFGSSGAVCDRYSEVESSSVRIVTQDDVDVACGSEDSNFQPLLKPYQLVGVNFLLLLYRKRIGGAPEFVFVGTSLCSATAIMFLRFLVITMLSSLCLLEHDCVYIATVIFLKLCGFDYAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGSARAAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHACVVTATARENKRKKPVNLSSLSVGFAGVNINIIPEVSLVMNLLQELWSMLEFMMPDIFASEDVDLKKLLSAEDKDLTSRMKSILGPFILRRLKSDVMQQLVRKTQKVQYVVMEKQQEHAYKEAIEEYRAVSQARLTKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRDVELVVIELPPQRDPEKSWIRYRSFIRSFTLYLQEDSITQTTTPPSTTTTMGEKLILPHSLLAFRSS*