Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189240 | KEH36428.1 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 2.37e-158 | 447 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189240 | sp|Q9LU85|PAP4_ARATH | 56.522 | 184 | 74 | 4 | 46 | 225 | 38 | 219 | 5.10e-64 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189240 | A0A072V521 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 1.13e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0040420 | Msa0189240 | 0.815122 | 1.086999e-51 | -8.615850e-47 |
| Msa0143280 | Msa0189240 | 0.819518 | 1.113447e-52 | -8.615850e-47 |
| Msa0155350 | Msa0189240 | 0.811341 | 7.347635e-51 | -8.615850e-47 |
| Msa0163960 | Msa0189240 | 0.800952 | 1.131815e-48 | -8.615850e-47 |
| Msa0189240 | Msa0231580 | 0.966075 | 1.938095e-125 | -8.615850e-47 |
| Msa0189240 | Msa0231590 | 0.814617 | 1.406600e-51 | -8.615850e-47 |
| Msa0189240 | Msa0533140 | 0.810845 | 9.413840e-51 | -8.615850e-47 |
| Msa0189240 | Msa0618490 | 0.804551 | 2.045886e-49 | -8.615850e-47 |
| Msa0189240 | Msa0625440 | 0.804385 | 2.215719e-49 | -8.615850e-47 |
| Msa0189240 | Msa0774560 | 0.820953 | 5.224265e-53 | -8.615850e-47 |
| Msa0189240 | Msa0797010 | 0.805891 | 1.072457e-49 | -8.615850e-47 |
| Msa0189240 | Msa0829110 | 0.803795 | 2.939940e-49 | -8.615850e-47 |
| Msa0189240 | Msa0834690 | 0.814870 | 1.236166e-51 | -8.615850e-47 |
| Msa0189240 | Msa0849290 | 0.805525 | 1.279760e-49 | -8.615850e-47 |
| Msa0189240 | Msa0911910 | 0.808749 | 2.658527e-50 | -8.615850e-47 |
| Msa0189240 | Msa0949380 | 0.809434 | 1.895710e-50 | -8.615850e-47 |
| Msa0189240 | Msa0985430 | 0.802185 | 6.324344e-49 | -8.615850e-47 |
| Msa0189240 | Msa1029430 | 0.816311 | 5.905282e-52 | -8.615850e-47 |
| Msa0189240 | Msa1035790 | 0.809109 | 2.225615e-50 | -8.615850e-47 |
| Msa0189240 | Msa1107950 | 0.805957 | 1.038527e-49 | -8.615850e-47 |
| Msa0189240 | Msa1114240 | 0.808520 | 2.975283e-50 | -8.615850e-47 |
| Msa0189240 | Msa1164570 | 0.810357 | 1.200007e-50 | -8.615850e-47 |
| Msa0189240 | Msa1182800 | 0.816292 | 5.962417e-52 | -8.615850e-47 |
| Msa0189240 | Msa1205520 | 0.801344 | 9.413070e-49 | -8.615850e-47 |
| Msa0189240 | Msa1243730 | 0.807939 | 3.955296e-50 | -8.615850e-47 |
| Msa0189240 | Msa1349490 | 0.812258 | 4.640515e-51 | -8.615850e-47 |
| Msa0189240 | Msa1363560 | 0.817953 | 2.524144e-52 | -8.615850e-47 |
| Msa0189240 | Msa1378840 | 0.807922 | 3.988984e-50 | -8.615850e-47 |
| Msa0189240 | Msa1386250 | 0.811310 | 7.462978e-51 | -8.615850e-47 |
| Msa0189240 | Msa1393550 | 0.810622 | 1.052005e-50 | -8.615850e-47 |
| Msa0189240 | Msa1426310 | 0.812240 | 4.683933e-51 | -8.615850e-47 |
| Msa0189240 | Msa1443550 | 0.803807 | 2.922242e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189240 | MtrunA17_Chr2g0278261 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 8.12e-162 | 447 |
| Msa0189240 | MtrunA17_Chr2g0278051 | 60.452 | 177 | 67 | 2 | 49 | 225 | 47 | 220 | 4.92e-71 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0189240 | AT3G26070.1 | 56.522 | 184 | 74 | 4 | 46 | 225 | 38 | 219 | 5.18e-65 | 201 |
| Msa0189240 | AT3G26080.1 | 59.873 | 157 | 60 | 3 | 70 | 225 | 57 | 211 | 1.22e-59 | 187 |
| Msa0189240 | AT3G26080.2 | 59.873 | 157 | 60 | 3 | 70 | 225 | 57 | 211 | 2.49e-59 | 188 |
Find 66 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATAGAGCTCAACTTTA+AGG | 0.109395 | 2_1:-4651630 | None:intergenic |
| CTGATTTGCTCAATGGAAAA+TGG | 0.156678 | 2_1:+4651890 | Msa0189240:CDS |
| CGTATTTGGATGAAGATTTA+AGG | 0.167214 | 2_1:+4654040 | Msa0189240:CDS |
| GTTCACAGCTCATTTGTTTC+TGG | 0.169913 | 2_1:+4654102 | Msa0189240:three_prime_UTR |
| TCAATTGGAAATTACGTATT+TGG | 0.195162 | 2_1:+4654026 | Msa0189240:CDS |
| CCATTTGGTCGCAGGAATTT+TGG | 0.196629 | 2_1:-4653095 | None:intergenic |
| AATAGTTAGTAAGGATAATT+TGG | 0.227636 | 2_1:+4654336 | Msa0189240:three_prime_UTR |
| CTTCTTCAAAATTGCTAGTT+TGG | 0.233095 | 2_1:+4653576 | Msa0189240:CDS |
| TATTGTACCTGGTTGTAAAA+TGG | 0.296463 | 2_1:-4653176 | None:intergenic |
| AAATTATCCTTACTAACTAT+TGG | 0.302503 | 2_1:-4654334 | None:intergenic |
| TGAGTTAAGTGGCACTAAAT+TGG | 0.333704 | 2_1:-4653530 | None:intergenic |
| GTAGTGTACAAAGTATTAAT+TGG | 0.335739 | 2_1:-4654285 | None:intergenic |
| ATGTTGGTGGTGTTGAATTT+TGG | 0.338770 | 2_1:-4651505 | None:intergenic |
| ACTTCAAAATCAGCAGTATA+TGG | 0.356570 | 2_1:+4654142 | Msa0189240:three_prime_UTR |
| TAGCTGCTGATTCTGCAAAA+TGG | 0.365601 | 2_1:+4651545 | Msa0189240:CDS |
| CAGATACCTATAAAATCATC+TGG | 0.373103 | 2_1:+4653991 | Msa0189240:intron |
| AAACTAACCAATAGTTAGTA+AGG | 0.396092 | 2_1:+4654327 | Msa0189240:three_prime_UTR |
| TGGGAGTGGTCGTGGTCAAT+TGG | 0.414725 | 2_1:+4654011 | Msa0189240:CDS |
| TGGCAGAGTAGAAGTGGGAG+TGG | 0.417431 | 2_1:-4651422 | None:intergenic |
| TTCTGCAAAATGGAGGAACT+TGG | 0.418599 | 2_1:+4651555 | Msa0189240:CDS |
| GCCTGGTAGATCTTTCCATT+TGG | 0.421158 | 2_1:-4653110 | None:intergenic |
| CTCAACTCTGATTTGCTCAA+TGG | 0.427126 | 2_1:+4651883 | Msa0189240:CDS |
| TCCACACGTTGTTGGTCCTC+AGG | 0.437483 | 2_1:-4651688 | None:intergenic |
| CCAAAATTCCTGCGACCAAA+TGG | 0.438668 | 2_1:+4653095 | Msa0189240:CDS |
| TAACCTTGTCCACACGTTGT+TGG | 0.440005 | 2_1:-4651696 | None:intergenic |
| TGATTTGCTCAATGGAAAAT+GGG | 0.442608 | 2_1:+4651891 | Msa0189240:CDS |
| TGAGGCTATGAACTCTGTTA+AGG | 0.456748 | 2_1:+4651855 | Msa0189240:CDS |
| GCTACCCTTCTTGAGTTAAG+TGG | 0.467062 | 2_1:-4653541 | None:intergenic |
| GAAGATTTGGTTGTGAAGGA+TGG | 0.468096 | 2_1:-4651465 | None:intergenic |
| GATGAAGATTTAAGGTGAGT+TGG | 0.471781 | 2_1:+4654048 | Msa0189240:exon |
| TAGTGCCACTTAACTCAAGA+AGG | 0.474795 | 2_1:+4653536 | Msa0189240:CDS |
| GAATCAATTATACATTTGAA+TGG | 0.483996 | 2_1:-4651442 | None:intergenic |
| ATGTATCTGTATTAATTGCC+TGG | 0.490157 | 2_1:-4653127 | None:intergenic |
| GAATCAGCAGCTACTGATGA+TGG | 0.500537 | 2_1:-4651535 | None:intergenic |
| AGATCTTTCCATTTGGTCGC+AGG | 0.508870 | 2_1:-4653103 | None:intergenic |
| TTCCTCCAGTTAGAAAACCT+TGG | 0.517994 | 2_1:-4651588 | None:intergenic |
| AAGATTTGGTTGTGAAGGAT+GGG | 0.520551 | 2_1:-4651464 | None:intergenic |
| AAATCATCTGGGAGTGGTCG+TGG | 0.522383 | 2_1:+4654003 | Msa0189240:CDS |
| GAGCTCAAAATATAGAAACT+TGG | 0.545026 | 2_1:+4653153 | Msa0189240:CDS |
| TTTGAATGGCAGAGTAGAAG+TGG | 0.547151 | 2_1:-4651428 | None:intergenic |
| AACTTGGTTTCAATCTTCCA+AGG | 0.553044 | 2_1:+4651571 | Msa0189240:CDS |
| TACAAGAGAATGTTAACAAG+AGG | 0.567448 | 2_1:+4651358 | None:intergenic |
| GTGTACAAAGTATTAATTGG+AGG | 0.569308 | 2_1:-4654282 | None:intergenic |
| CTAGATTGCTAGTAAACTTG+AGG | 0.574347 | 2_1:+4651837 | Msa0189240:intron |
| AATGATTAAGAGAAAGAGAG+TGG | 0.578762 | 2_1:-4654367 | None:intergenic |
| TCCTGAGGACCAACAACGTG+TGG | 0.586912 | 2_1:+4651687 | Msa0189240:CDS |
| CCTATAAAATCATCTGGGAG+TGG | 0.588827 | 2_1:+4653997 | Msa0189240:CDS |
| AAGTGGCACTAAATTGGCAG+TGG | 0.602208 | 2_1:-4653524 | None:intergenic |
| GGACCAACAACGTGTGGACA+AGG | 0.602478 | 2_1:+4651693 | Msa0189240:CDS |
| TGATGATGGTAATATGATGT+TGG | 0.604952 | 2_1:-4651521 | None:intergenic |
| GCTTCAGCACCACGTTCAAG+TGG | 0.605538 | 2_1:-4651661 | None:intergenic |
| AAAGGAAGATTTGGTTGTGA+AGG | 0.609629 | 2_1:-4651469 | None:intergenic |
| TGATGGTAATATGATGTTGG+TGG | 0.609634 | 2_1:-4651518 | None:intergenic |
| TCTAACTGGAGGAAGAGGAA+AGG | 0.618212 | 2_1:+4651597 | Msa0189240:CDS |
| AGTGCCACTTAACTCAAGAA+GGG | 0.619471 | 2_1:+4653537 | Msa0189240:CDS |
| TTTGTTTCTGGAATTCAACA+TGG | 0.625616 | 2_1:+4654114 | Msa0189240:three_prime_UTR |
| TGTACAAAGTATTAATTGGA+GGG | 0.627391 | 2_1:-4654281 | None:intergenic |
| AGATACCTATAAAATCATCT+GGG | 0.643096 | 2_1:+4653992 | Msa0189240:intron |
| CTGCTGATTCTGCAAAATGG+AGG | 0.648936 | 2_1:+4651548 | Msa0189240:CDS |
| GAGCTGTGAACATGTGAGAA+GGG | 0.649957 | 2_1:-4654090 | None:intergenic |
| TTGAATGGCAGAGTAGAAGT+GGG | 0.655278 | 2_1:-4651427 | None:intergenic |
| TGAGCTGTGAACATGTGAGA+AGG | 0.658950 | 2_1:-4654091 | None:intergenic |
| TTGAGCAAATCAGAGTTGAG+AGG | 0.664638 | 2_1:-4651880 | None:intergenic |
| ACCAAATGGAAAGATCTACC+AGG | 0.666458 | 2_1:+4653109 | Msa0189240:CDS |
| TGGTGCTGAAGCTACTCCTG+AGG | 0.671485 | 2_1:+4651672 | Msa0189240:CDS |
| ACAATTGAGCCACTTGAACG+TGG | 0.739802 | 2_1:+4651652 | Msa0189240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATATTCTTTAATTTA+AGG | + | chr2_1:4652293-4652312 | Msa0189240:intron | 10.0% |
| !!! | TCTTATTTATGACTTTTATA+TGG | + | chr2_1:4652036-4652055 | Msa0189240:intron | 15.0% |
| !!! | TAGCTATTTTATATGTATTA+TGG | + | chr2_1:4652391-4652410 | Msa0189240:intron | 15.0% |
| !! | ATTAAAAGAAAAAATGTAAG+TGG | - | chr2_1:4652525-4652544 | None:intergenic | 15.0% |
| !!! | AAAATTTAATGATTTAGAGT+TGG | + | chr2_1:4652859-4652878 | Msa0189240:intron | 15.0% |
| !!! | AAATTTAATGATTTAGAGTT+GGG | + | chr2_1:4652860-4652879 | Msa0189240:intron | 15.0% |
| !!! | ATTATTGAAAAGCTTTAAAA+CGG | - | chr2_1:4653433-4653452 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | - | chr2_1:4654313-4654332 | None:intergenic | 15.0% |
| !! | GAATCAATTATACATTTGAA+TGG | - | chr2_1:4651445-4651464 | None:intergenic | 20.0% |
| !! | CATAAATAAGAACCTATAAT+TGG | - | chr2_1:4652027-4652046 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTTCAATCCAA+GGG | - | chr2_1:4652112-4652131 | None:intergenic | 20.0% |
| !! | ATCAAAATCGATAAAAGATA+TGG | - | chr2_1:4652233-4652252 | None:intergenic | 20.0% |
| !!! | ATATCTTTTATCGATTTTGA+TGG | + | chr2_1:4652232-4652251 | Msa0189240:intron | 20.0% |
| !!! | TTCACTAAAGATTTTTTTGA+TGG | + | chr2_1:4652258-4652277 | Msa0189240:intron | 20.0% |
| !!! | AAATAGCTAAATCAACATTT+TGG | - | chr2_1:4652380-4652399 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACATCTTGC+AGG | - | chr2_1:4652598-4652617 | None:intergenic | 20.0% |
| !! | AATTAATCATCACTTTACAA+GGG | - | chr2_1:4653054-4653073 | None:intergenic | 20.0% |
| !! | GAAAATTGAAAAGTTAATAC+TGG | - | chr2_1:4653611-4653630 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr2_1:4654250-4654269 | None:intergenic | 20.0% |
| !! | AAATTATCCTTACTAACTAT+TGG | - | chr2_1:4654337-4654356 | None:intergenic | 20.0% |
| !! | AATAGTTAGTAAGGATAATT+TGG | + | chr2_1:4654336-4654355 | Msa0189240:three_prime_UTR | 20.0% |
| ! | TGTTACATGCATAATAGTTT+AGG | + | chr2_1:4651746-4651765 | Msa0189240:intron | 25.0% |
| !! | CATAATAGTTTAGGTTTATG+TGG | + | chr2_1:4651755-4651774 | Msa0189240:intron | 25.0% |
| ! | CATAAAATCAATCACAAACT+AGG | - | chr2_1:4651807-4651826 | None:intergenic | 25.0% |
| !!! | AGTTTGTGATTGATTTTATG+TGG | + | chr2_1:4651807-4651826 | Msa0189240:intron | 25.0% |
| ! | GATATCCAAATTCCAATTAT+AGG | + | chr2_1:4652012-4652031 | Msa0189240:intron | 25.0% |
| ! | AAGAACCTATAATTGGAATT+TGG | - | chr2_1:4652020-4652039 | None:intergenic | 25.0% |
| !!! | CATTGATATTTTTCAATCCA+AGG | - | chr2_1:4652113-4652132 | None:intergenic | 25.0% |
| ! | TAAAGCATATGTGCTTATAT+TGG | + | chr2_1:4652172-4652191 | Msa0189240:intron | 25.0% |
| ! | AATTTCAGAGATTAAATTGC+TGG | + | chr2_1:4652335-4652354 | Msa0189240:intron | 25.0% |
| ! | ATATGTATTATGGATTCAGT+TGG | + | chr2_1:4652401-4652420 | Msa0189240:intron | 25.0% |
| ! | AAAGAAAAAATGTAAGTGGT+CGG | - | chr2_1:4652521-4652540 | None:intergenic | 25.0% |
| !! | AAAACAGACTCTTAAGTTTT+CGG | + | chr2_1:4652548-4652567 | Msa0189240:intron | 25.0% |
| ! | TAGATAGAGCTTATAAAGAT+GGG | - | chr2_1:4652697-4652716 | None:intergenic | 25.0% |
| ! | ATAGATAGAGCTTATAAAGA+TGG | - | chr2_1:4652698-4652717 | None:intergenic | 25.0% |
| !! | TAAATTTTCCATAAGTATGC+TGG | - | chr2_1:4652847-4652866 | None:intergenic | 25.0% |
| ! | CAATTAATCATCACTTTACA+AGG | - | chr2_1:4653055-4653074 | None:intergenic | 25.0% |
| ! | AAACAGATACTTAAACCAAT+GGG | - | chr2_1:4653208-4653227 | None:intergenic | 25.0% |
| ! | TAAACAGATACTTAAACCAA+TGG | - | chr2_1:4653209-4653228 | None:intergenic | 25.0% |
| ! | AATCCATGTAGTTGAAATAT+TGG | + | chr2_1:4653238-4653257 | Msa0189240:intron | 25.0% |
| ! | TTTCCAATATTTCAACTACA+TGG | - | chr2_1:4653244-4653263 | None:intergenic | 25.0% |
| ! | GTGCTATAAAATATTAAGTC+TGG | + | chr2_1:4653833-4653852 | Msa0189240:intron | 25.0% |
| !!! | AAACATATTTTTCAGGGATT+TGG | - | chr2_1:4653941-4653960 | None:intergenic | 25.0% |
| !! | TCAGGAAAACATATTTTTCA+GGG | - | chr2_1:4653947-4653966 | None:intergenic | 25.0% |
| ! | AGATACCTATAAAATCATCT+GGG | + | chr2_1:4653992-4654011 | Msa0189240:intron | 25.0% |
| ! | TCAATTGGAAATTACGTATT+TGG | + | chr2_1:4654026-4654045 | Msa0189240:CDS | 25.0% |
| !! | TGTACAAAGTATTAATTGGA+GGG | - | chr2_1:4654284-4654303 | None:intergenic | 25.0% |
| !! | GTAGTGTACAAAGTATTAAT+TGG | - | chr2_1:4654288-4654307 | None:intergenic | 25.0% |
| ! | AAACTAACCAATAGTTAGTA+AGG | + | chr2_1:4654327-4654346 | Msa0189240:three_prime_UTR | 25.0% |
| !! | TGATGATGGTAATATGATGT+TGG | - | chr2_1:4651524-4651543 | None:intergenic | 30.0% |
| TTTCATAGAGCTCAACTTTA+AGG | - | chr2_1:4651633-4651652 | None:intergenic | 30.0% | |
| !! | TGATTTGCTCAATGGAAAAT+GGG | + | chr2_1:4651891-4651910 | Msa0189240:CDS | 30.0% |
| ! | TCAATCAATTTTGCAAACAC+AGG | + | chr2_1:4651933-4651952 | Msa0189240:CDS | 30.0% |
| AACTATATTGCATTAGGATC+TGG | - | chr2_1:4651987-4652006 | None:intergenic | 30.0% | |
| CAGAGAAACTATATTGCATT+AGG | - | chr2_1:4651993-4652012 | None:intergenic | 30.0% | |
| !! | GCACATATGCTTTAAAATTG+AGG | - | chr2_1:4652166-4652185 | None:intergenic | 30.0% |
| TTAACATGCTCATCAAAATG+TGG | + | chr2_1:4652463-4652482 | Msa0189240:intron | 30.0% | |
| TATAAAACTACTCCTTTGTG+TGG | + | chr2_1:4652759-4652778 | Msa0189240:intron | 30.0% | |
| ! | AAGGGTCAAATTGTCTATTT+TGG | + | chr2_1:4652786-4652805 | Msa0189240:intron | 30.0% |
| ATGTATCTGTATTAATTGCC+TGG | - | chr2_1:4653130-4653149 | None:intergenic | 30.0% | |
| GAGCTCAAAATATAGAAACT+TGG | + | chr2_1:4653153-4653172 | Msa0189240:CDS | 30.0% | |
| TATTGTACCTGGTTGTAAAA+TGG | - | chr2_1:4653179-4653198 | None:intergenic | 30.0% | |
| TAGAAGAATTCAAGAAACCT+TGG | + | chr2_1:4653295-4653314 | Msa0189240:intron | 30.0% | |
| ATTTGATGAAGTTAGCATGT+AGG | - | chr2_1:4653461-4653480 | None:intergenic | 30.0% | |
| CAACAACAGTGAAAATTTAC+GGG | - | chr2_1:4653500-4653519 | None:intergenic | 30.0% | |
| GCAACAACAGTGAAAATTTA+CGG | - | chr2_1:4653501-4653520 | None:intergenic | 30.0% | |
| ! | TAAATTTTCACTGTTGTTGC+AGG | + | chr2_1:4653501-4653520 | Msa0189240:intron | 30.0% |
| CTTCTTCAAAATTGCTAGTT+TGG | + | chr2_1:4653576-4653595 | Msa0189240:CDS | 30.0% | |
| GTTAAAAGACGATGACAAAT+AGG | - | chr2_1:4653642-4653661 | None:intergenic | 30.0% | |
| !! | GCATTTGAGTTGTTAATTAC+TGG | + | chr2_1:4653672-4653691 | Msa0189240:intron | 30.0% |
| ! | AAAATATTAAGTCTGGAACC+AGG | + | chr2_1:4653840-4653859 | Msa0189240:intron | 30.0% |
| ! | GTCAGGAAAACATATTTTTC+AGG | - | chr2_1:4653948-4653967 | None:intergenic | 30.0% |
| CAGATACCTATAAAATCATC+TGG | + | chr2_1:4653991-4654010 | Msa0189240:intron | 30.0% | |
| CGTATTTGGATGAAGATTTA+AGG | + | chr2_1:4654040-4654059 | Msa0189240:CDS | 30.0% | |
| !! | TTTGTTTCTGGAATTCAACA+TGG | + | chr2_1:4654114-4654133 | Msa0189240:three_prime_UTR | 30.0% |
| ACTTCAAAATCAGCAGTATA+TGG | + | chr2_1:4654142-4654161 | Msa0189240:three_prime_UTR | 30.0% | |
| ! | GTGTACAAAGTATTAATTGG+AGG | - | chr2_1:4654285-4654304 | None:intergenic | 30.0% |
| AATGATTAAGAGAAAGAGAG+TGG | - | chr2_1:4654370-4654389 | None:intergenic | 30.0% | |
| ! | AAGATTTGGTTGTGAAGGAT+GGG | - | chr2_1:4651467-4651486 | None:intergenic | 35.0% |
| ! | AAAGGAAGATTTGGTTGTGA+AGG | - | chr2_1:4651472-4651491 | None:intergenic | 35.0% |
| !!! | ATGTTGGTGGTGTTGAATTT+TGG | - | chr2_1:4651508-4651527 | None:intergenic | 35.0% |
| TGATGGTAATATGATGTTGG+TGG | - | chr2_1:4651521-4651540 | None:intergenic | 35.0% | |
| AACTTGGTTTCAATCTTCCA+AGG | + | chr2_1:4651571-4651590 | Msa0189240:CDS | 35.0% | |
| ! | ATCTTCCAAGGTTTTCTAAC+TGG | + | chr2_1:4651583-4651602 | Msa0189240:CDS | 35.0% |
| CTAGATTGCTAGTAAACTTG+AGG | + | chr2_1:4651837-4651856 | Msa0189240:intron | 35.0% | |
| !! | CTGATTTGCTCAATGGAAAA+TGG | + | chr2_1:4651890-4651909 | Msa0189240:CDS | 35.0% |
| ! | TCAATTTTGCAAACACAGGT+TGG | + | chr2_1:4651937-4651956 | Msa0189240:intron | 35.0% |
| GATAGGCACTTACAATTTCA+AGG | - | chr2_1:4652081-4652100 | None:intergenic | 35.0% | |
| ATCCAAGGGACTAAATTGAT+AGG | - | chr2_1:4652098-4652117 | None:intergenic | 35.0% | |
| TTTGGCACTCGAAATTGTAA+GGG | - | chr2_1:4652362-4652381 | None:intergenic | 35.0% | |
| ! | TTTTGGCACTCGAAATTGTA+AGG | - | chr2_1:4652363-4652382 | None:intergenic | 35.0% |
| ! | CAGGTCTATTTTACGAGATT+GGG | - | chr2_1:4652579-4652598 | None:intergenic | 35.0% |
| ! | GAATCAAACAGGGTTCTTTT+AGG | + | chr2_1:4652654-4652673 | Msa0189240:intron | 35.0% |
| ! | TTCTTTTAGGCTAACAGATG+TGG | + | chr2_1:4652667-4652686 | Msa0189240:intron | 35.0% |
| ATGACTTACCAGCATACTTA+TGG | + | chr2_1:4652836-4652855 | Msa0189240:intron | 35.0% | |
| !! | CATTGTTACTTACTTTTGCG+TGG | - | chr2_1:4653383-4653402 | None:intergenic | 35.0% |
| TGAGTTAAGTGGCACTAAAT+TGG | - | chr2_1:4653533-4653552 | None:intergenic | 35.0% | |
| ATCACAAATCAACACATTCG+CGG | + | chr2_1:4653741-4653760 | Msa0189240:intron | 35.0% | |
| GCATTGTACACTTATTTGTC+AGG | - | chr2_1:4653965-4653984 | None:intergenic | 35.0% | |
| ! | GATGAAGATTTAAGGTGAGT+TGG | + | chr2_1:4654048-4654067 | Msa0189240:exon | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | - | chr2_1:4654184-4654203 | None:intergenic | 35.0% |
| TTGAATGGCAGAGTAGAAGT+GGG | - | chr2_1:4651430-4651449 | None:intergenic | 40.0% | |
| TTTGAATGGCAGAGTAGAAG+TGG | - | chr2_1:4651431-4651450 | None:intergenic | 40.0% | |
| ! | GAAGATTTGGTTGTGAAGGA+TGG | - | chr2_1:4651468-4651487 | None:intergenic | 40.0% |
| !! | TGGTGTTGAATTTTGGTCGT+GGG | - | chr2_1:4651501-4651520 | None:intergenic | 40.0% |
| !! | TAGCTGCTGATTCTGCAAAA+TGG | + | chr2_1:4651545-4651564 | Msa0189240:CDS | 40.0% |
| TTCTGCAAAATGGAGGAACT+TGG | + | chr2_1:4651555-4651574 | Msa0189240:CDS | 40.0% | |
| ! | TTCCAAGGTTTTCTAACTGG+AGG | + | chr2_1:4651586-4651605 | Msa0189240:CDS | 40.0% |
| TTCCTCCAGTTAGAAAACCT+TGG | - | chr2_1:4651591-4651610 | None:intergenic | 40.0% | |
| TGAGGCTATGAACTCTGTTA+AGG | + | chr2_1:4651855-4651874 | Msa0189240:CDS | 40.0% | |
| TTGAGCAAATCAGAGTTGAG+AGG | - | chr2_1:4651883-4651902 | None:intergenic | 40.0% | |
| !! | CTCAACTCTGATTTGCTCAA+TGG | + | chr2_1:4651883-4651902 | Msa0189240:CDS | 40.0% |
| TGCCTATCAATTTAGTCCCT+TGG | + | chr2_1:4652093-4652112 | Msa0189240:intron | 40.0% | |
| GGTCGGTCTACATTCAATAT+GGG | - | chr2_1:4652504-4652523 | None:intergenic | 40.0% | |
| TGGTCGGTCTACATTCAATA+TGG | - | chr2_1:4652505-4652524 | None:intergenic | 40.0% | |
| ! | GCAGGTCTATTTTACGAGAT+TGG | - | chr2_1:4652580-4652599 | None:intergenic | 40.0% |
| AAGAACCCTGTTTGATTCCT+GGG | - | chr2_1:4652652-4652671 | None:intergenic | 40.0% | |
| AAAGAACCCTGTTTGATTCC+TGG | - | chr2_1:4652653-4652672 | None:intergenic | 40.0% | |
| ! | CTCAAGTGTCACAGTGATTT+TGG | - | chr2_1:4652722-4652741 | None:intergenic | 40.0% |
| TACTCCTTTGTGTGGTCAAA+AGG | + | chr2_1:4652767-4652786 | Msa0189240:intron | 40.0% | |
| ACTCCTTTGTGTGGTCAAAA+GGG | + | chr2_1:4652768-4652787 | Msa0189240:intron | 40.0% | |
| CTGTCTTGCTCATTATTGAC+AGG | - | chr2_1:4652898-4652917 | None:intergenic | 40.0% | |
| ACCAAATGGAAAGATCTACC+AGG | + | chr2_1:4653109-4653128 | Msa0189240:CDS | 40.0% | |
| !! | AACTTGGCCATTTTACAACC+AGG | + | chr2_1:4653169-4653188 | Msa0189240:CDS | 40.0% |
| !! | TCAAGAAACCTTGGTGTTGA+CGG | + | chr2_1:4653304-4653323 | Msa0189240:intron | 40.0% |
| !! | TAGTGCCACTTAACTCAAGA+AGG | + | chr2_1:4653536-4653555 | Msa0189240:CDS | 40.0% |
| !! | AGTGCCACTTAACTCAAGAA+GGG | + | chr2_1:4653537-4653556 | Msa0189240:CDS | 40.0% |
| ! | GTTAATTACTGGCTACGTCA+TGG | + | chr2_1:4653683-4653702 | Msa0189240:intron | 40.0% |
| ! | ATGGTTTGTGTCATGGAGAA+TGG | + | chr2_1:4653702-4653721 | Msa0189240:intron | 40.0% |
| ! | TGTGTCATGGAGAATGGATT+TGG | + | chr2_1:4653708-4653727 | Msa0189240:intron | 40.0% |
| GATTAAAGATCAGACAGTCC+TGG | - | chr2_1:4653861-4653880 | None:intergenic | 40.0% | |
| ! | CCACTCCCAGATGATTTTAT+AGG | - | chr2_1:4654000-4654019 | None:intergenic | 40.0% |
| CCTATAAAATCATCTGGGAG+TGG | + | chr2_1:4653997-4654016 | Msa0189240:CDS | 40.0% | |
| GTTCACAGCTCATTTGTTTC+TGG | + | chr2_1:4654102-4654121 | Msa0189240:three_prime_UTR | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | chr2_1:4654180-4654199 | None:intergenic | 40.0% |
| !! | GTGTTGAATTTTGGTCGTGG+GGG | - | chr2_1:4651499-4651518 | None:intergenic | 45.0% |
| !! | GGTGTTGAATTTTGGTCGTG+GGG | - | chr2_1:4651500-4651519 | None:intergenic | 45.0% |
| !! | GTGGTGTTGAATTTTGGTCG+TGG | - | chr2_1:4651502-4651521 | None:intergenic | 45.0% |
| GAATCAGCAGCTACTGATGA+TGG | - | chr2_1:4651538-4651557 | None:intergenic | 45.0% | |
| !! | CTGCTGATTCTGCAAAATGG+AGG | + | chr2_1:4651548-4651567 | Msa0189240:CDS | 45.0% |
| ! | GGTTTTCTAACTGGAGGAAG+AGG | + | chr2_1:4651592-4651611 | Msa0189240:CDS | 45.0% |
| TCTAACTGGAGGAAGAGGAA+AGG | + | chr2_1:4651597-4651616 | Msa0189240:CDS | 45.0% | |
| ACAATTGAGCCACTTGAACG+TGG | + | chr2_1:4651652-4651671 | Msa0189240:CDS | 45.0% | |
| TAACCTTGTCCACACGTTGT+TGG | - | chr2_1:4651699-4651718 | None:intergenic | 45.0% | |
| !! | CAGGTTGGTTTCTAGAGTAG+AGG | + | chr2_1:4651952-4651971 | Msa0189240:intron | 45.0% |
| ! | TGACCCTTTTGACCACACAA+AGG | - | chr2_1:4652774-4652793 | None:intergenic | 45.0% |
| !! | TCGCAGGAATTTTGGTCTCT+AGG | - | chr2_1:4653090-4653109 | None:intergenic | 45.0% |
| ! | CCATTTGGTCGCAGGAATTT+TGG | - | chr2_1:4653098-4653117 | None:intergenic | 45.0% |
| CCAAAATTCCTGCGACCAAA+TGG | + | chr2_1:4653095-4653114 | Msa0189240:CDS | 45.0% | |
| AGATCTTTCCATTTGGTCGC+AGG | - | chr2_1:4653106-4653125 | None:intergenic | 45.0% | |
| GCCTGGTAGATCTTTCCATT+TGG | - | chr2_1:4653113-4653132 | None:intergenic | 45.0% | |
| ATGGGCAGAACTATTGTACC+TGG | - | chr2_1:4653190-4653209 | None:intergenic | 45.0% | |
| ! | GGTACAATAGTTCTGCCCAT+TGG | + | chr2_1:4653190-4653209 | Msa0189240:intron | 45.0% |
| !! | CAAGAAACCTTGGTGTTGAC+GGG | + | chr2_1:4653305-4653324 | Msa0189240:intron | 45.0% |
| ACTAAAACCCGTCAACACCA+AGG | - | chr2_1:4653315-4653334 | None:intergenic | 45.0% | |
| !! | ACGGGTTTTAGTGTCGCAAT+AGG | + | chr2_1:4653323-4653342 | Msa0189240:intron | 45.0% |
| AAGTGGCACTAAATTGGCAG+TGG | - | chr2_1:4653527-4653546 | None:intergenic | 45.0% | |
| GCTACCCTTCTTGAGTTAAG+TGG | - | chr2_1:4653544-4653563 | None:intergenic | 45.0% | |
| ! | CTACGTCATGGTTTGTGTCA+TGG | + | chr2_1:4653695-4653714 | Msa0189240:intron | 45.0% |
| CATTCGCGGAGTTAACACAA+TGG | + | chr2_1:4653755-4653774 | Msa0189240:intron | 45.0% | |
| ATCTCACACATTCACGCAGT+CGG | - | chr2_1:4653901-4653920 | None:intergenic | 45.0% | |
| GAGCTGTGAACATGTGAGAA+GGG | - | chr2_1:4654093-4654112 | None:intergenic | 45.0% | |
| TGAGCTGTGAACATGTGAGA+AGG | - | chr2_1:4654094-4654113 | None:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | chr2_1:4654181-4654200 | None:intergenic | 45.0% |
| ! | GGGGGTGCAAAAGGAAGATT+TGG | - | chr2_1:4651481-4651500 | None:intergenic | 50.0% |
| AAAGTGATAACAGCCAGCCC+AGG | + | chr2_1:4652632-4652651 | Msa0189240:intron | 50.0% | |
| ! | GTCGGCATATTGATGGCAGA+TGG | - | chr2_1:4653883-4653902 | None:intergenic | 50.0% |
| TCACGCAGTCGGCATATTGA+TGG | - | chr2_1:4653890-4653909 | None:intergenic | 50.0% | |
| AAATCATCTGGGAGTGGTCG+TGG | + | chr2_1:4654003-4654022 | Msa0189240:CDS | 50.0% | |
| TGGCAGAGTAGAAGTGGGAG+TGG | - | chr2_1:4651425-4651444 | None:intergenic | 55.0% | |
| ! | TTTGGTCGTGGGGGTGCAAA+AGG | - | chr2_1:4651490-4651509 | None:intergenic | 55.0% |
| GCTTCAGCACCACGTTCAAG+TGG | - | chr2_1:4651664-4651683 | None:intergenic | 55.0% | |
| ! | TGGTGCTGAAGCTACTCCTG+AGG | + | chr2_1:4651672-4651691 | Msa0189240:CDS | 55.0% |
| TCCTGAGGACCAACAACGTG+TGG | + | chr2_1:4651687-4651706 | Msa0189240:CDS | 55.0% | |
| TCCACACGTTGTTGGTCCTC+AGG | - | chr2_1:4651691-4651710 | None:intergenic | 55.0% | |
| GGACCAACAACGTGTGGACA+AGG | + | chr2_1:4651693-4651712 | Msa0189240:CDS | 55.0% | |
| AGCCAGCCCAGGAATCAAAC+AGG | + | chr2_1:4652643-4652662 | Msa0189240:intron | 55.0% | |
| GCCAGCCCAGGAATCAAACA+GGG | + | chr2_1:4652644-4652663 | Msa0189240:intron | 55.0% | |
| ACCCTGTTTGATTCCTGGGC+TGG | - | chr2_1:4652648-4652667 | None:intergenic | 55.0% | |
| TGGGAGTGGTCGTGGTCAAT+TGG | + | chr2_1:4654011-4654030 | Msa0189240:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 4651371 | 4654421 | 4651371 | ID=Msa0189240;Name=Msa0189240 |
| chr2_1 | mRNA | 4651371 | 4654421 | 4651371 | ID=Msa0189240-mRNA-1;Parent=Msa0189240;Name=Msa0189240-mRNA-1;_AED=0.19;_eAED=0.19;_QI=26|1|1|1|1|1|5|356|225 |
| chr2_1 | exon | 4651371 | 4651714 | 4651371 | ID=Msa0189240-mRNA-1:exon:2023;Parent=Msa0189240-mRNA-1 |
| chr2_1 | exon | 4651841 | 4651954 | 4651841 | ID=Msa0189240-mRNA-1:exon:2024;Parent=Msa0189240-mRNA-1 |
| chr2_1 | exon | 4653092 | 4653190 | 4653092 | ID=Msa0189240-mRNA-1:exon:2025;Parent=Msa0189240-mRNA-1 |
| chr2_1 | exon | 4653523 | 4653597 | 4653523 | ID=Msa0189240-mRNA-1:exon:2026;Parent=Msa0189240-mRNA-1 |
| chr2_1 | exon | 4653994 | 4654421 | 4653994 | ID=Msa0189240-mRNA-1:exon:2027;Parent=Msa0189240-mRNA-1 |
| chr2_1 | five_prime_UTR | 4651371 | 4651396 | 4651371 | ID=Msa0189240-mRNA-1:five_prime_utr;Parent=Msa0189240-mRNA-1 |
| chr2_1 | CDS | 4651397 | 4651714 | 4651397 | ID=Msa0189240-mRNA-1:cds;Parent=Msa0189240-mRNA-1 |
| chr2_1 | CDS | 4651841 | 4651954 | 4651841 | ID=Msa0189240-mRNA-1:cds;Parent=Msa0189240-mRNA-1 |
| chr2_1 | CDS | 4653092 | 4653190 | 4653092 | ID=Msa0189240-mRNA-1:cds;Parent=Msa0189240-mRNA-1 |
| chr2_1 | CDS | 4653523 | 4653597 | 4653523 | ID=Msa0189240-mRNA-1:cds;Parent=Msa0189240-mRNA-1 |
| chr2_1 | CDS | 4653994 | 4654065 | 4653994 | ID=Msa0189240-mRNA-1:cds;Parent=Msa0189240-mRNA-1 |
| chr2_1 | three_prime_UTR | 4654066 | 4654421 | 4654066 | ID=Msa0189240-mRNA-1:three_prime_utr;Parent=Msa0189240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
