Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231580 | XP_003593086.1 | 87.500 | 248 | 24 | 1 | 1 | 241 | 1 | 248 | 2.37e-153 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231580 | sp|Q9LU85|PAP4_ARATH | 51.691 | 207 | 87 | 6 | 46 | 241 | 38 | 242 | 3.17e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231580 | A2Q498 | 87.500 | 248 | 24 | 1 | 1 | 241 | 1 | 248 | 1.13e-153 | 436 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030400 | Msa0231580 | 0.813599 | 2.359610e-51 | -8.615850e-47 |
| Msa0143280 | Msa0231580 | 0.815078 | 1.111225e-51 | -8.615850e-47 |
| Msa0164630 | Msa0231580 | 0.803649 | 3.151226e-49 | -8.615850e-47 |
| Msa0168900 | Msa0231580 | 0.800864 | 1.179988e-48 | -8.615850e-47 |
| Msa0173760 | Msa0231580 | 0.811443 | 6.983289e-51 | -8.615850e-47 |
| Msa0173850 | Msa0231580 | 0.806959 | 6.384972e-50 | -8.615850e-47 |
| Msa0179260 | Msa0231580 | 0.801011 | 1.101132e-48 | -8.615850e-47 |
| Msa0189240 | Msa0231580 | 0.966075 | 1.938095e-125 | -8.615850e-47 |
| Msa0199740 | Msa0231580 | 0.803349 | 3.637485e-49 | -8.615850e-47 |
| Msa0231580 | Msa0231590 | 0.844446 | 7.520974e-59 | -8.615850e-47 |
| Msa0231580 | Msa0251140 | 0.812811 | 3.513617e-51 | -8.615850e-47 |
| Msa0231580 | Msa0267120 | 0.802167 | 6.379427e-49 | -8.615850e-47 |
| Msa0231580 | Msa0272420 | 0.807348 | 5.280464e-50 | -8.615850e-47 |
| Msa0231580 | Msa0282860 | 0.808388 | 3.174481e-50 | -8.615850e-47 |
| Msa0231580 | Msa0312570 | 0.802340 | 5.876825e-49 | -8.615850e-47 |
| Msa0231580 | Msa0389060 | 0.801811 | 7.550670e-49 | -8.615850e-47 |
| Msa0231580 | Msa0458790 | 0.801158 | 1.027390e-48 | -8.615850e-47 |
| Msa0231580 | Msa0471890 | 0.810140 | 1.336557e-50 | -8.615850e-47 |
| Msa0231580 | Msa0589600 | 0.818154 | 2.272510e-52 | -8.615850e-47 |
| Msa0231580 | Msa0589640 | 0.803457 | 3.453733e-49 | -8.615850e-47 |
| Msa0231580 | Msa0605230 | 0.807832 | 4.169572e-50 | -8.615850e-47 |
| Msa0231580 | Msa0607440 | 0.805412 | 1.351708e-49 | -8.615850e-47 |
| Msa0231580 | Msa0618260 | 0.803020 | 4.255151e-49 | -8.615850e-47 |
| Msa0231580 | Msa0618490 | 0.812344 | 4.445581e-51 | -8.615850e-47 |
| Msa0231580 | Msa0639880 | 0.804688 | 1.916090e-49 | -8.615850e-47 |
| Msa0231580 | Msa0677840 | 0.812805 | 3.524390e-51 | -8.615850e-47 |
| Msa0231580 | Msa0727300 | 0.801130 | 1.041013e-48 | -8.615850e-47 |
| Msa0231580 | Msa0774560 | 0.818325 | 2.079331e-52 | -8.615850e-47 |
| Msa0231580 | Msa0797010 | 0.809226 | 2.101438e-50 | -8.615850e-47 |
| Msa0231580 | Msa0829110 | 0.807906 | 4.020289e-50 | -8.615850e-47 |
| Msa0231580 | Msa0829430 | 0.818391 | 2.008464e-52 | -8.615850e-47 |
| Msa0231580 | Msa0834690 | 0.831277 | 1.828701e-55 | -8.615850e-47 |
| Msa0231580 | Msa0842050 | 0.805835 | 1.101775e-49 | -8.615850e-47 |
| Msa0231580 | Msa0871470 | 0.800351 | 1.501340e-48 | -8.615850e-47 |
| Msa0231580 | Msa0911910 | 0.823491 | 1.346010e-53 | -8.615850e-47 |
| Msa0231580 | Msa0949380 | 0.833095 | 6.492711e-56 | -8.615850e-47 |
| Msa0231580 | Msa0985430 | 0.827322 | 1.668337e-54 | -8.615850e-47 |
| Msa0231580 | Msa1029430 | 0.843307 | 1.518850e-58 | -8.615850e-47 |
| Msa0231580 | Msa1068290 | 0.803484 | 3.409893e-49 | -8.615850e-47 |
| Msa0231580 | Msa1107950 | 0.804779 | 1.833875e-49 | -8.615850e-47 |
| Msa0231580 | Msa1114240 | 0.805883 | 1.076414e-49 | -8.615850e-47 |
| Msa0231580 | Msa1164570 | 0.804372 | 2.229974e-49 | -8.615850e-47 |
| Msa0231580 | Msa1182800 | 0.836189 | 1.082676e-56 | -8.615850e-47 |
| Msa0231580 | Msa1192150 | 0.802501 | 5.445107e-49 | -8.615850e-47 |
| Msa0231580 | Msa1193400 | 0.805685 | 1.184461e-49 | -8.615850e-47 |
| Msa0231580 | Msa1204430 | 0.802157 | 6.409989e-49 | -8.615850e-47 |
| Msa0231580 | Msa1205520 | 0.804064 | 2.584624e-49 | -8.615850e-47 |
| Msa0231580 | Msa1212740 | 0.812117 | 4.981183e-51 | -8.615850e-47 |
| Msa0231580 | Msa1212960 | 0.808888 | 2.482411e-50 | -8.615850e-47 |
| Msa0231580 | Msa1238700 | 0.823501 | 1.338616e-53 | -8.615850e-47 |
| Msa0231580 | Msa1243730 | 0.807575 | 4.726507e-50 | -8.615850e-47 |
| Msa0231580 | Msa1291140 | 0.813112 | 3.018551e-51 | -8.615850e-47 |
| Msa0231580 | Msa1341790 | 0.824093 | 9.729973e-54 | -8.615850e-47 |
| Msa0231580 | Msa1349490 | 0.802422 | 5.651594e-49 | -8.615850e-47 |
| Msa0231580 | Msa1359620 | 0.806853 | 6.722364e-50 | -8.615850e-47 |
| Msa0231580 | Msa1363560 | 0.803984 | 2.684967e-49 | -8.615850e-47 |
| Msa0231580 | Msa1386020 | 0.807194 | 5.694241e-50 | -8.615850e-47 |
| Msa0231580 | Msa1386250 | 0.816714 | 4.796046e-52 | -8.615850e-47 |
| Msa0231580 | Msa1403700 | 0.806367 | 8.513108e-50 | -8.615850e-47 |
| Msa0231580 | Msa1426310 | 0.800422 | 1.451739e-48 | -8.615850e-47 |
| Msa0231580 | Msa1443550 | 0.809999 | 1.433381e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231580 | MtrunA17_Chr2g0278261 | 87.500 | 248 | 24 | 1 | 1 | 241 | 1 | 248 | 2.18e-157 | 436 |
| Msa0231580 | MtrunA17_Chr2g0278051 | 56.000 | 200 | 78 | 3 | 49 | 241 | 47 | 243 | 2.51e-71 | 218 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0231580 | AT3G26070.1 | 51.691 | 207 | 87 | 6 | 46 | 241 | 38 | 242 | 3.23e-63 | 197 |
| Msa0231580 | AT3G26080.1 | 52.778 | 180 | 75 | 4 | 70 | 241 | 57 | 234 | 1.92e-55 | 177 |
| Msa0231580 | AT3G26080.2 | 47.368 | 209 | 71 | 5 | 70 | 241 | 57 | 263 | 1.34e-52 | 171 |
Find 66 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATAGAGCTCAACTTTA+AGG | 0.109395 | 2_2:-3857358 | None:intergenic |
| CTGATTTGCTCAATGGAAAA+TGG | 0.156678 | 2_2:+3857618 | Msa0231580:CDS |
| GATCACAGCTCATTTGTTTC+TGG | 0.169913 | 2_2:+3859825 | Msa0231580:intron |
| CCATTTGGTCGCAGGAATTT+TGG | 0.196629 | 2_2:-3858818 | None:intergenic |
| CTTCTTCAAAATTGCTAGTT+TGG | 0.233095 | 2_2:+3859299 | Msa0231580:CDS |
| GAATTTAAATTAAATAATTT+AGG | 0.258097 | 2_2:-3860312 | None:intergenic |
| CAACTTGTTTATCTTGAAAA+TGG | 0.275931 | 2_2:+3860016 | Msa0231580:CDS |
| TTGAAGCACTCGCATCAAAT+AGG | 0.280438 | 2_2:-3860059 | None:intergenic |
| TATTGTACCTGGTTGTAAAA+TGG | 0.296463 | 2_2:-3858899 | None:intergenic |
| AGGTTTGAATTTGTTTATAA+AGG | 0.307601 | 2_2:-3860155 | None:intergenic |
| TGAGTTAAGTGGCACTAAAT+TGG | 0.333704 | 2_2:-3859253 | None:intergenic |
| ATGTTGGTGGTGTTGAATTT+TGG | 0.338770 | 2_2:-3857233 | None:intergenic |
| TCAAGATTTGCTGCTGGTTG+TGG | 0.350138 | 2_2:+3860078 | Msa0231580:three_prime_UTR |
| TAGCTGCTGATTCTGCAAAA+TGG | 0.365601 | 2_2:+3857273 | Msa0231580:CDS |
| AATTTAAATTCATTTCTAGA+AGG | 0.366834 | 2_2:+3860324 | Msa0231580:three_prime_UTR |
| TTTAATTAGTTAAATGCTTA+GGG | 0.386991 | 2_2:+3860225 | Msa0231580:three_prime_UTR |
| TTACACTTTGCTGCTGGTTG+TGG | 0.388873 | 2_2:+3860112 | Msa0231580:three_prime_UTR |
| TGGCAGAGTAGAAGTGGGAG+TGG | 0.417431 | 2_2:-3857150 | None:intergenic |
| TTCTGCAAAATGGAGGAACT+TGG | 0.418599 | 2_2:+3857283 | Msa0231580:CDS |
| GCCTGGTAGATCTTTCCATT+TGG | 0.421158 | 2_2:-3858833 | None:intergenic |
| CTCAACTCTGATTTGCTCAA+TGG | 0.427126 | 2_2:+3857611 | Msa0231580:CDS |
| TGAAGCACTCGCATCAAATA+GGG | 0.432639 | 2_2:-3860058 | None:intergenic |
| TTCAACTTACACTTTGCTGC+TGG | 0.436174 | 2_2:+3860106 | Msa0231580:three_prime_UTR |
| TCCACACGTTGTTGGTCCTC+AGG | 0.437483 | 2_2:-3857416 | None:intergenic |
| CCAAAATTCCTGCGACCAAA+TGG | 0.438668 | 2_2:+3858818 | Msa0231580:CDS |
| TAACCTTGTCCACACGTTGT+TGG | 0.440005 | 2_2:-3857424 | None:intergenic |
| TGATTTGCTCAATGGAAAAT+GGG | 0.442608 | 2_2:+3857619 | Msa0231580:CDS |
| TGGGTTATGGATACTTACTA+TGG | 0.454575 | 2_2:-3860271 | None:intergenic |
| TGAGGCTATGAACTCTGTTA+AGG | 0.456748 | 2_2:+3857583 | Msa0231580:CDS |
| GCTACCCTTCTTGAGTTAAG+TGG | 0.467062 | 2_2:-3859264 | None:intergenic |
| GAAGATTTGGTTGTGAAGGA+TGG | 0.468096 | 2_2:-3857193 | None:intergenic |
| TAGTGCCACTTAACTCAAGA+AGG | 0.474795 | 2_2:+3859259 | Msa0231580:CDS |
| GAATCAATTATACATTTGAA+TGG | 0.483996 | 2_2:-3857170 | None:intergenic |
| ATGTATCTGTATTAATTGCC+TGG | 0.490157 | 2_2:-3858850 | None:intergenic |
| AGAATATCAAGAGGTAATAG+AGG | 0.493006 | 2_2:+3859993 | Msa0231580:intron |
| ACTTTGCTGCTGGTTGTGGA+TGG | 0.495161 | 2_2:+3860116 | Msa0231580:three_prime_UTR |
| GAATCAGCAGCTACTGATGA+TGG | 0.500537 | 2_2:-3857263 | None:intergenic |
| GATTTGCTGCTGGTTGTGGA+TGG | 0.502175 | 2_2:+3860082 | Msa0231580:three_prime_UTR |
| GCATCAAATAGGGACTCTAT+AGG | 0.504016 | 2_2:-3860048 | None:intergenic |
| AGATCTTTCCATTTGGTCGC+AGG | 0.508870 | 2_2:-3858826 | None:intergenic |
| TTCCTCCAGTTAGAAAACCT+TGG | 0.517994 | 2_2:-3857316 | None:intergenic |
| AAGATTTGGTTGTGAAGGAT+GGG | 0.520551 | 2_2:-3857192 | None:intergenic |
| AGTGCTTCAAGATTTGCTGC+TGG | 0.520856 | 2_2:+3860072 | Msa0231580:three_prime_UTR |
| GAGCTCAAAATATAGAAACT+TGG | 0.545026 | 2_2:+3858876 | Msa0231580:CDS |
| TTTGAATGGCAGAGTAGAAG+TGG | 0.547151 | 2_2:-3857156 | None:intergenic |
| AACTTGGTTTCAATCTTCCA+AGG | 0.553044 | 2_2:+3857299 | Msa0231580:CDS |
| TACAAGAGAATGTTAACAAG+AGG | 0.567448 | 2_2:+3857086 | None:intergenic |
| CTAGATTGCTAGTAAACTTG+AGG | 0.574347 | 2_2:+3857565 | Msa0231580:intron |
| CAAATAGGGACTCTATAGGA+TGG | 0.578281 | 2_2:-3860044 | None:intergenic |
| TCCTGAGGACCAACAACGTG+TGG | 0.586912 | 2_2:+3857415 | Msa0231580:CDS |
| AAGTGGCACTAAATTGGCAG+TGG | 0.602208 | 2_2:-3859247 | None:intergenic |
| GGACCAACAACGTGTGGACA+AGG | 0.602478 | 2_2:+3857421 | Msa0231580:CDS |
| TGATGATGGTAATATGATGT+TGG | 0.604952 | 2_2:-3857249 | None:intergenic |
| GCTTCAGCACCACGTTCAAG+TGG | 0.605538 | 2_2:-3857389 | None:intergenic |
| AAAGGAAGATTTGGTTGTGA+AGG | 0.609629 | 2_2:-3857197 | None:intergenic |
| TGATGGTAATATGATGTTGG+TGG | 0.609634 | 2_2:-3857246 | None:intergenic |
| TCTAACTGGAGGAAGAGGAA+AGG | 0.618212 | 2_2:+3857325 | Msa0231580:CDS |
| AGTGCCACTTAACTCAAGAA+GGG | 0.619471 | 2_2:+3859260 | Msa0231580:CDS |
| TTTGTTTCTGGAATTCAACA+TGG | 0.625616 | 2_2:+3859837 | Msa0231580:CDS |
| CTGCTGATTCTGCAAAATGG+AGG | 0.648936 | 2_2:+3857276 | Msa0231580:CDS |
| GAACCTGACAGAATATCAAG+AGG | 0.650729 | 2_2:+3859984 | Msa0231580:intron |
| TTGAATGGCAGAGTAGAAGT+GGG | 0.655278 | 2_2:-3857155 | None:intergenic |
| TTGAGCAAATCAGAGTTGAG+AGG | 0.664638 | 2_2:-3857608 | None:intergenic |
| ACCAAATGGAAAGATCTACC+AGG | 0.666458 | 2_2:+3858832 | Msa0231580:CDS |
| TGGTGCTGAAGCTACTCCTG+AGG | 0.671485 | 2_2:+3857400 | Msa0231580:CDS |
| ACAATTGAGCCACTTGAACG+TGG | 0.739802 | 2_2:+3857380 | Msa0231580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATATTCTTTAATTTA+AGG | + | chr2_2:3858021-3858040 | Msa0231580:intron | 10.0% |
| !!! | TCTTATTTATGACTTTTATA+TGG | + | chr2_2:3857764-3857783 | Msa0231580:intron | 15.0% |
| !!! | TAGCTATTTTAAATGTATTA+TGG | + | chr2_2:3858119-3858138 | Msa0231580:intron | 15.0% |
| !! | ATTAAAAGAAAAAATGTAAG+TGG | - | chr2_2:3858253-3858272 | None:intergenic | 15.0% |
| !!! | AAAATTTAATGATTTAGAGT+TGG | + | chr2_2:3858582-3858601 | Msa0231580:intron | 15.0% |
| !!! | AAATTTAATGATTTAGAGTT+GGG | + | chr2_2:3858583-3858602 | Msa0231580:intron | 15.0% |
| !!! | ATTATTGAAAAGCTTTAAAA+CGG | - | chr2_2:3859156-3859175 | None:intergenic | 15.0% |
| !!! | TTTTAATTAGTTAAATGCTT+AGG | + | chr2_2:3860224-3860243 | Msa0231580:three_prime_UTR | 15.0% |
| !! | TTTAATTAGTTAAATGCTTA+GGG | + | chr2_2:3860225-3860244 | Msa0231580:three_prime_UTR | 15.0% |
| !! | GAATCAATTATACATTTGAA+TGG | - | chr2_2:3857173-3857192 | None:intergenic | 20.0% |
| !! | CATAAATAAGAACCTATAAT+TGG | - | chr2_2:3857755-3857774 | None:intergenic | 20.0% |
| !!! | ATTGATATTTTTCAATCCAA+GGG | - | chr2_2:3857840-3857859 | None:intergenic | 20.0% |
| !! | ATCAAAATCGATAAAAGATA+TGG | - | chr2_2:3857961-3857980 | None:intergenic | 20.0% |
| !!! | ATATCTTTTATCGATTTTGA+TGG | + | chr2_2:3857960-3857979 | Msa0231580:intron | 20.0% |
| !!! | TTCACTAAAGATTTTTTTGA+TGG | + | chr2_2:3857986-3858005 | Msa0231580:intron | 20.0% |
| !!! | AAATAGCTAAATCAACATTT+TGG | - | chr2_2:3858108-3858127 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAAACATCTTGC+AGG | - | chr2_2:3858326-3858345 | None:intergenic | 20.0% |
| !! | AATTAATCATCACTTTACAA+GGG | - | chr2_2:3858777-3858796 | None:intergenic | 20.0% |
| !! | GAAAATTGAAAAGTTAATAC+TGG | - | chr2_2:3859334-3859353 | None:intergenic | 20.0% |
| !!! | AGGTTTGAATTTGTTTATAA+AGG | - | chr2_2:3860158-3860177 | None:intergenic | 20.0% |
| !! | GTAAAAAAAATAAAACAGAG+AGG | - | chr2_2:3860178-3860197 | None:intergenic | 20.0% |
| ! | TGTTACATGCATAATAGTTT+AGG | + | chr2_2:3857474-3857493 | Msa0231580:intron | 25.0% |
| !! | CATAATAGTTTAGGTTTATG+TGG | + | chr2_2:3857483-3857502 | Msa0231580:intron | 25.0% |
| ! | CATAAAATCAATCACAAACT+AGG | - | chr2_2:3857535-3857554 | None:intergenic | 25.0% |
| !!! | AGTTTGTGATTGATTTTATG+TGG | + | chr2_2:3857535-3857554 | Msa0231580:intron | 25.0% |
| ! | GATATCCAAATTCCAATTAT+AGG | + | chr2_2:3857740-3857759 | Msa0231580:intron | 25.0% |
| ! | AAGAACCTATAATTGGAATT+TGG | - | chr2_2:3857748-3857767 | None:intergenic | 25.0% |
| !!! | CATTGATATTTTTCAATCCA+AGG | - | chr2_2:3857841-3857860 | None:intergenic | 25.0% |
| ! | TAAAGCATATGTGCTTATAT+TGG | + | chr2_2:3857900-3857919 | Msa0231580:intron | 25.0% |
| ! | AATTTCAGAGATTAAATTGC+TGG | + | chr2_2:3858063-3858082 | Msa0231580:intron | 25.0% |
| ! | AAATGTATTATGGATTCAGT+TGG | + | chr2_2:3858129-3858148 | Msa0231580:intron | 25.0% |
| ! | AAAGAAAAAATGTAAGTGGT+CGG | - | chr2_2:3858249-3858268 | None:intergenic | 25.0% |
| !! | AAAACAGACTCTTAAGTTTT+CGG | + | chr2_2:3858276-3858295 | Msa0231580:intron | 25.0% |
| ! | TAGATAGAGCTTATAAAGAT+GGG | - | chr2_2:3858422-3858441 | None:intergenic | 25.0% |
| ! | ATAGATAGAGCTTATAAAGA+TGG | - | chr2_2:3858423-3858442 | None:intergenic | 25.0% |
| !! | TAAATTTTCCATAAGTATGC+TGG | - | chr2_2:3858570-3858589 | None:intergenic | 25.0% |
| ! | CAATTAATCATCACTTTACA+AGG | - | chr2_2:3858778-3858797 | None:intergenic | 25.0% |
| ! | AAACAGATACTTAAACCAAT+GGG | - | chr2_2:3858931-3858950 | None:intergenic | 25.0% |
| ! | TAAACAGATACTTAAACCAA+TGG | - | chr2_2:3858932-3858951 | None:intergenic | 25.0% |
| ! | AATCCATGTAGTTGAAATAT+TGG | + | chr2_2:3858961-3858980 | Msa0231580:intron | 25.0% |
| ! | TTTCCAATATTTCAACTACA+TGG | - | chr2_2:3858967-3858986 | None:intergenic | 25.0% |
| ! | GTGCTATAAAATATTAAGTC+TGG | + | chr2_2:3859556-3859575 | Msa0231580:intron | 25.0% |
| !!! | AAACATATTTTTCAGGGATT+TGG | - | chr2_2:3859664-3859683 | None:intergenic | 25.0% |
| !! | TCAGGAAAACATATTTTTCA+GGG | - | chr2_2:3859670-3859689 | None:intergenic | 25.0% |
| ! | AGATACCTATAAAATCATCT+GGG | + | chr2_2:3859715-3859734 | Msa0231580:intron | 25.0% |
| ! | TCAATTGGAAATTACGTATT+TGG | + | chr2_2:3859749-3859768 | Msa0231580:intron | 25.0% |
| !! | CAACTTGTTTATCTTGAAAA+TGG | + | chr2_2:3860016-3860035 | Msa0231580:CDS | 25.0% |
| ! | ACAAAAAAATTGTTGGGTTA+TGG | - | chr2_2:3860287-3860306 | None:intergenic | 25.0% |
| ! | GCAACAACAAAAAAATTGTT+GGG | - | chr2_2:3860293-3860312 | None:intergenic | 25.0% |
| !! | TGATGATGGTAATATGATGT+TGG | - | chr2_2:3857252-3857271 | None:intergenic | 30.0% |
| TTTCATAGAGCTCAACTTTA+AGG | - | chr2_2:3857361-3857380 | None:intergenic | 30.0% | |
| !! | TGATTTGCTCAATGGAAAAT+GGG | + | chr2_2:3857619-3857638 | Msa0231580:CDS | 30.0% |
| ! | TCAATCAATTTTGCAAACAC+AGG | + | chr2_2:3857661-3857680 | Msa0231580:CDS | 30.0% |
| AACTATATTGCATTAGGATC+TGG | - | chr2_2:3857715-3857734 | None:intergenic | 30.0% | |
| CAGAGAAACTATATTGCATT+AGG | - | chr2_2:3857721-3857740 | None:intergenic | 30.0% | |
| !! | GCACATATGCTTTAAAATTG+AGG | - | chr2_2:3857894-3857913 | None:intergenic | 30.0% |
| TTAACATGCTCATCAAAATG+TGG | + | chr2_2:3858191-3858210 | Msa0231580:intron | 30.0% | |
| TATAAAACTACTCCTTTGTG+TGG | + | chr2_2:3858482-3858501 | Msa0231580:intron | 30.0% | |
| ! | AAGGGTCAAATTGTCTATTT+TGG | + | chr2_2:3858509-3858528 | Msa0231580:intron | 30.0% |
| ATGTATCTGTATTAATTGCC+TGG | - | chr2_2:3858853-3858872 | None:intergenic | 30.0% | |
| GAGCTCAAAATATAGAAACT+TGG | + | chr2_2:3858876-3858895 | Msa0231580:CDS | 30.0% | |
| TATTGTACCTGGTTGTAAAA+TGG | - | chr2_2:3858902-3858921 | None:intergenic | 30.0% | |
| TAGAAGAATTCAAGAAACCT+TGG | + | chr2_2:3859018-3859037 | Msa0231580:intron | 30.0% | |
| ATTTGATGAAGTTAGCATGT+AGG | - | chr2_2:3859184-3859203 | None:intergenic | 30.0% | |
| CAACAACAGTGAAAATTTAC+GGG | - | chr2_2:3859223-3859242 | None:intergenic | 30.0% | |
| GCAACAACAGTGAAAATTTA+CGG | - | chr2_2:3859224-3859243 | None:intergenic | 30.0% | |
| ! | TAAATTTTCACTGTTGTTGC+AGG | + | chr2_2:3859224-3859243 | Msa0231580:intron | 30.0% |
| CTTCTTCAAAATTGCTAGTT+TGG | + | chr2_2:3859299-3859318 | Msa0231580:CDS | 30.0% | |
| GTTAAAAGACGATGACAAAT+AGG | - | chr2_2:3859365-3859384 | None:intergenic | 30.0% | |
| !! | GCATTTGAGTTGTTAATTAC+TGG | + | chr2_2:3859395-3859414 | Msa0231580:intron | 30.0% |
| ! | AAAATATTAAGTCTGGAACC+AGG | + | chr2_2:3859563-3859582 | Msa0231580:intron | 30.0% |
| ! | GTCAGGAAAACATATTTTTC+AGG | - | chr2_2:3859671-3859690 | None:intergenic | 30.0% |
| CAGATACCTATAAAATCATC+TGG | + | chr2_2:3859714-3859733 | Msa0231580:intron | 30.0% | |
| CGTATTTGGATGAAGATTTA+AGG | + | chr2_2:3859763-3859782 | Msa0231580:intron | 30.0% | |
| !! | TTTGTTTCTGGAATTCAACA+TGG | + | chr2_2:3859837-3859856 | Msa0231580:CDS | 30.0% |
| ACTTCAAAATCAGCAGTATA+TGG | + | chr2_2:3859865-3859884 | Msa0231580:intron | 30.0% | |
| ATATGCACATATAAGTGATC+AGG | + | chr2_2:3859916-3859935 | Msa0231580:intron | 30.0% | |
| TATGCACATATAAGTGATCA+GGG | + | chr2_2:3859917-3859936 | Msa0231580:intron | 30.0% | |
| ATATTCATACTCAATCAGCA+TGG | - | chr2_2:3859951-3859970 | None:intergenic | 30.0% | |
| AGAATATCAAGAGGTAATAG+AGG | + | chr2_2:3859993-3860012 | Msa0231580:intron | 30.0% | |
| GGCAACAACAAAAAAATTGT+TGG | - | chr2_2:3860294-3860313 | None:intergenic | 30.0% | |
| ! | AAGATTTGGTTGTGAAGGAT+GGG | - | chr2_2:3857195-3857214 | None:intergenic | 35.0% |
| ! | AAAGGAAGATTTGGTTGTGA+AGG | - | chr2_2:3857200-3857219 | None:intergenic | 35.0% |
| !!! | ATGTTGGTGGTGTTGAATTT+TGG | - | chr2_2:3857236-3857255 | None:intergenic | 35.0% |
| TGATGGTAATATGATGTTGG+TGG | - | chr2_2:3857249-3857268 | None:intergenic | 35.0% | |
| AACTTGGTTTCAATCTTCCA+AGG | + | chr2_2:3857299-3857318 | Msa0231580:CDS | 35.0% | |
| ! | ATCTTCCAAGGTTTTCTAAC+TGG | + | chr2_2:3857311-3857330 | Msa0231580:CDS | 35.0% |
| CTAGATTGCTAGTAAACTTG+AGG | + | chr2_2:3857565-3857584 | Msa0231580:intron | 35.0% | |
| !! | CTGATTTGCTCAATGGAAAA+TGG | + | chr2_2:3857618-3857637 | Msa0231580:CDS | 35.0% |
| ! | TCAATTTTGCAAACACAGGT+TGG | + | chr2_2:3857665-3857684 | Msa0231580:intron | 35.0% |
| GATAGGCACTTACAATTTCA+AGG | - | chr2_2:3857809-3857828 | None:intergenic | 35.0% | |
| ATCCAAGGGACTAAATTGAT+AGG | - | chr2_2:3857826-3857845 | None:intergenic | 35.0% | |
| TTTGGCACTCGAAATTGTAA+GGG | - | chr2_2:3858090-3858109 | None:intergenic | 35.0% | |
| ! | TTTTGGCACTCGAAATTGTA+AGG | - | chr2_2:3858091-3858110 | None:intergenic | 35.0% |
| ! | CAGGTCTATTTTACGAGATT+GGG | - | chr2_2:3858307-3858326 | None:intergenic | 35.0% |
| ! | GAATCAAACAGGGTTCTTTT+AGG | + | chr2_2:3858379-3858398 | Msa0231580:intron | 35.0% |
| ! | TTCTTTTAGGCTAACAGATG+TGG | + | chr2_2:3858392-3858411 | Msa0231580:intron | 35.0% |
| ATGACTTACCAGCATACTTA+TGG | + | chr2_2:3858559-3858578 | Msa0231580:intron | 35.0% | |
| ! | CATTGTTACTTACATTTGCG+TGG | - | chr2_2:3859106-3859125 | None:intergenic | 35.0% |
| TGAGTTAAGTGGCACTAAAT+TGG | - | chr2_2:3859256-3859275 | None:intergenic | 35.0% | |
| ATCACAAATCAACACATTCG+CGG | + | chr2_2:3859464-3859483 | Msa0231580:intron | 35.0% | |
| GATTAAAGATCAGATAGTCC+TGG | - | chr2_2:3859584-3859603 | None:intergenic | 35.0% | |
| GCATTGTACACTTATTTGTC+AGG | - | chr2_2:3859688-3859707 | None:intergenic | 35.0% | |
| ! | GATGAAGATTTAAGGTGAGT+TGG | + | chr2_2:3859771-3859790 | Msa0231580:intron | 35.0% |
| TTACCTCTTGATATTCTGTC+AGG | - | chr2_2:3859990-3860009 | None:intergenic | 35.0% | |
| TGGGTTATGGATACTTACTA+TGG | - | chr2_2:3860274-3860293 | None:intergenic | 35.0% | |
| TTGAATGGCAGAGTAGAAGT+GGG | - | chr2_2:3857158-3857177 | None:intergenic | 40.0% | |
| TTTGAATGGCAGAGTAGAAG+TGG | - | chr2_2:3857159-3857178 | None:intergenic | 40.0% | |
| ! | GAAGATTTGGTTGTGAAGGA+TGG | - | chr2_2:3857196-3857215 | None:intergenic | 40.0% |
| !! | TGGTGTTGAATTTTGGTCGT+GGG | - | chr2_2:3857229-3857248 | None:intergenic | 40.0% |
| !! | TAGCTGCTGATTCTGCAAAA+TGG | + | chr2_2:3857273-3857292 | Msa0231580:CDS | 40.0% |
| TTCTGCAAAATGGAGGAACT+TGG | + | chr2_2:3857283-3857302 | Msa0231580:CDS | 40.0% | |
| ! | TTCCAAGGTTTTCTAACTGG+AGG | + | chr2_2:3857314-3857333 | Msa0231580:CDS | 40.0% |
| TTCCTCCAGTTAGAAAACCT+TGG | - | chr2_2:3857319-3857338 | None:intergenic | 40.0% | |
| TGAGGCTATGAACTCTGTTA+AGG | + | chr2_2:3857583-3857602 | Msa0231580:CDS | 40.0% | |
| TTGAGCAAATCAGAGTTGAG+AGG | - | chr2_2:3857611-3857630 | None:intergenic | 40.0% | |
| !! | CTCAACTCTGATTTGCTCAA+TGG | + | chr2_2:3857611-3857630 | Msa0231580:CDS | 40.0% |
| TGCCTATCAATTTAGTCCCT+TGG | + | chr2_2:3857821-3857840 | Msa0231580:intron | 40.0% | |
| GGTCGGTCTACATTCAATAT+GGG | - | chr2_2:3858232-3858251 | None:intergenic | 40.0% | |
| TGGTCGGTCTACATTCAATA+TGG | - | chr2_2:3858233-3858252 | None:intergenic | 40.0% | |
| ! | GCAGGTCTATTTTACGAGAT+TGG | - | chr2_2:3858308-3858327 | None:intergenic | 40.0% |
| AAGAACCCTGTTTGATTCCT+GGG | - | chr2_2:3858377-3858396 | None:intergenic | 40.0% | |
| AAAGAACCCTGTTTGATTCC+TGG | - | chr2_2:3858378-3858397 | None:intergenic | 40.0% | |
| ! | CTCAAGTCTCACAGTGATTT+TGG | - | chr2_2:3858447-3858466 | None:intergenic | 40.0% |
| TACTCCTTTGTGTGGTCAAA+AGG | + | chr2_2:3858490-3858509 | Msa0231580:intron | 40.0% | |
| ACTCCTTTGTGTGGTCAAAA+GGG | + | chr2_2:3858491-3858510 | Msa0231580:intron | 40.0% | |
| CTGTCTTGCTCATTATTGAC+AGG | - | chr2_2:3858621-3858640 | None:intergenic | 40.0% | |
| ACCAAATGGAAAGATCTACC+AGG | + | chr2_2:3858832-3858851 | Msa0231580:CDS | 40.0% | |
| !! | AACTTGGCCATTTTACAACC+AGG | + | chr2_2:3858892-3858911 | Msa0231580:CDS | 40.0% |
| !! | TCAAGAAACCTTGGTGTTGA+CGG | + | chr2_2:3859027-3859046 | Msa0231580:intron | 40.0% |
| !! | TAGTGCCACTTAACTCAAGA+AGG | + | chr2_2:3859259-3859278 | Msa0231580:CDS | 40.0% |
| !! | AGTGCCACTTAACTCAAGAA+GGG | + | chr2_2:3859260-3859279 | Msa0231580:CDS | 40.0% |
| ! | GTTAATTACTGGCTACGTCA+TGG | + | chr2_2:3859406-3859425 | Msa0231580:intron | 40.0% |
| ! | ATGGTTTGTGTCATGGAGAA+TGG | + | chr2_2:3859425-3859444 | Msa0231580:intron | 40.0% |
| ! | TGTGTCATGGAGAATGGATT+TGG | + | chr2_2:3859431-3859450 | Msa0231580:intron | 40.0% |
| ! | CCACTCCCAGATGATTTTAT+AGG | - | chr2_2:3859723-3859742 | None:intergenic | 40.0% |
| CCTATAAAATCATCTGGGAG+TGG | + | chr2_2:3859720-3859739 | Msa0231580:intron | 40.0% | |
| GATCACAGCTCATTTGTTTC+TGG | + | chr2_2:3859825-3859844 | Msa0231580:intron | 40.0% | |
| CTTGATATTCTGTCAGGTTC+AGG | - | chr2_2:3859984-3860003 | None:intergenic | 40.0% | |
| GAACCTGACAGAATATCAAG+AGG | + | chr2_2:3859984-3860003 | Msa0231580:intron | 40.0% | |
| CAAATAGGGACTCTATAGGA+TGG | - | chr2_2:3860047-3860066 | None:intergenic | 40.0% | |
| GCATCAAATAGGGACTCTAT+AGG | - | chr2_2:3860051-3860070 | None:intergenic | 40.0% | |
| ! | TGAAGCACTCGCATCAAATA+GGG | - | chr2_2:3860061-3860080 | None:intergenic | 40.0% |
| ! | TTGAAGCACTCGCATCAAAT+AGG | - | chr2_2:3860062-3860081 | None:intergenic | 40.0% |
| TTCAACTTACACTTTGCTGC+TGG | + | chr2_2:3860106-3860125 | Msa0231580:three_prime_UTR | 40.0% | |
| !! | GTGTTGAATTTTGGTCGTGG+GGG | - | chr2_2:3857227-3857246 | None:intergenic | 45.0% |
| !! | GGTGTTGAATTTTGGTCGTG+GGG | - | chr2_2:3857228-3857247 | None:intergenic | 45.0% |
| !! | GTGGTGTTGAATTTTGGTCG+TGG | - | chr2_2:3857230-3857249 | None:intergenic | 45.0% |
| GAATCAGCAGCTACTGATGA+TGG | - | chr2_2:3857266-3857285 | None:intergenic | 45.0% | |
| !! | CTGCTGATTCTGCAAAATGG+AGG | + | chr2_2:3857276-3857295 | Msa0231580:CDS | 45.0% |
| ! | GGTTTTCTAACTGGAGGAAG+AGG | + | chr2_2:3857320-3857339 | Msa0231580:CDS | 45.0% |
| TCTAACTGGAGGAAGAGGAA+AGG | + | chr2_2:3857325-3857344 | Msa0231580:CDS | 45.0% | |
| ACAATTGAGCCACTTGAACG+TGG | + | chr2_2:3857380-3857399 | Msa0231580:CDS | 45.0% | |
| TAACCTTGTCCACACGTTGT+TGG | - | chr2_2:3857427-3857446 | None:intergenic | 45.0% | |
| !! | CAGGTTGGTTTCTAGAGTAG+AGG | + | chr2_2:3857680-3857699 | Msa0231580:intron | 45.0% |
| ! | TGACCCTTTTGACCACACAA+AGG | - | chr2_2:3858497-3858516 | None:intergenic | 45.0% |
| !! | TCGCAGGAATTTTGGTCTCT+AGG | - | chr2_2:3858813-3858832 | None:intergenic | 45.0% |
| ! | CCATTTGGTCGCAGGAATTT+TGG | - | chr2_2:3858821-3858840 | None:intergenic | 45.0% |
| CCAAAATTCCTGCGACCAAA+TGG | + | chr2_2:3858818-3858837 | Msa0231580:CDS | 45.0% | |
| AGATCTTTCCATTTGGTCGC+AGG | - | chr2_2:3858829-3858848 | None:intergenic | 45.0% | |
| GCCTGGTAGATCTTTCCATT+TGG | - | chr2_2:3858836-3858855 | None:intergenic | 45.0% | |
| ATGGGCAGAACTATTGTACC+TGG | - | chr2_2:3858913-3858932 | None:intergenic | 45.0% | |
| ! | GGTACAATAGTTCTGCCCAT+TGG | + | chr2_2:3858913-3858932 | Msa0231580:intron | 45.0% |
| !! | CAAGAAACCTTGGTGTTGAC+GGG | + | chr2_2:3859028-3859047 | Msa0231580:intron | 45.0% |
| ACTAAAACCCGTCAACACCA+AGG | - | chr2_2:3859038-3859057 | None:intergenic | 45.0% | |
| !! | ACGGGTTTTAGTGTCGCAAT+AGG | + | chr2_2:3859046-3859065 | Msa0231580:intron | 45.0% |
| AAGTGGCACTAAATTGGCAG+TGG | - | chr2_2:3859250-3859269 | None:intergenic | 45.0% | |
| GCTACCCTTCTTGAGTTAAG+TGG | - | chr2_2:3859267-3859286 | None:intergenic | 45.0% | |
| ! | CTACGTCATGGTTTGTGTCA+TGG | + | chr2_2:3859418-3859437 | Msa0231580:intron | 45.0% |
| CATTCGCGGAGTTAACACAA+TGG | + | chr2_2:3859478-3859497 | Msa0231580:intron | 45.0% | |
| ATCTCACACATTCACGCAGT+CGG | - | chr2_2:3859624-3859643 | None:intergenic | 45.0% | |
| GAGCTGTGATCATGTGAGAA+GGG | - | chr2_2:3859816-3859835 | None:intergenic | 45.0% | |
| TGAGCTGTGATCATGTGAGA+AGG | - | chr2_2:3859817-3859836 | None:intergenic | 45.0% | |
| !! | AGTGCTTCAAGATTTGCTGC+TGG | + | chr2_2:3860072-3860091 | Msa0231580:three_prime_UTR | 45.0% |
| !! | TCAAGATTTGCTGCTGGTTG+TGG | + | chr2_2:3860078-3860097 | Msa0231580:three_prime_UTR | 45.0% |
| ! | TTACACTTTGCTGCTGGTTG+TGG | + | chr2_2:3860112-3860131 | Msa0231580:three_prime_UTR | 45.0% |
| !! | GAATTTAAATTAAATAATTT+AGG | - | chr2_2:3860315-3860334 | None:intergenic | 5.0% |
| ! | GGGGGTGCAAAAGGAAGATT+TGG | - | chr2_2:3857209-3857228 | None:intergenic | 50.0% |
| AAAGTGATAACAGCCAGCCC+AGG | + | chr2_2:3858357-3858376 | Msa0231580:intron | 50.0% | |
| ! | GTCGGCATATTGATGGCAGA+TGG | - | chr2_2:3859606-3859625 | None:intergenic | 50.0% |
| TCACGCAGTCGGCATATTGA+TGG | - | chr2_2:3859613-3859632 | None:intergenic | 50.0% | |
| AAATCATCTGGGAGTGGTCG+TGG | + | chr2_2:3859726-3859745 | Msa0231580:intron | 50.0% | |
| !! | GATTTGCTGCTGGTTGTGGA+TGG | + | chr2_2:3860082-3860101 | Msa0231580:three_prime_UTR | 50.0% |
| ! | ACTTTGCTGCTGGTTGTGGA+TGG | + | chr2_2:3860116-3860135 | Msa0231580:three_prime_UTR | 50.0% |
| TGGCAGAGTAGAAGTGGGAG+TGG | - | chr2_2:3857153-3857172 | None:intergenic | 55.0% | |
| ! | TTTGGTCGTGGGGGTGCAAA+AGG | - | chr2_2:3857218-3857237 | None:intergenic | 55.0% |
| GCTTCAGCACCACGTTCAAG+TGG | - | chr2_2:3857392-3857411 | None:intergenic | 55.0% | |
| ! | TGGTGCTGAAGCTACTCCTG+AGG | + | chr2_2:3857400-3857419 | Msa0231580:CDS | 55.0% |
| TCCTGAGGACCAACAACGTG+TGG | + | chr2_2:3857415-3857434 | Msa0231580:CDS | 55.0% | |
| TCCACACGTTGTTGGTCCTC+AGG | - | chr2_2:3857419-3857438 | None:intergenic | 55.0% | |
| GGACCAACAACGTGTGGACA+AGG | + | chr2_2:3857421-3857440 | Msa0231580:CDS | 55.0% | |
| AGCCAGCCCAGGAATCAAAC+AGG | + | chr2_2:3858368-3858387 | Msa0231580:intron | 55.0% | |
| GCCAGCCCAGGAATCAAACA+GGG | + | chr2_2:3858369-3858388 | Msa0231580:intron | 55.0% | |
| ACCCTGTTTGATTCCTGGGC+TGG | - | chr2_2:3858373-3858392 | None:intergenic | 55.0% | |
| TGGGAGTGGTCGTGGTCAAT+TGG | + | chr2_2:3859734-3859753 | Msa0231580:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 3857099 | 3860343 | 3857099 | ID=Msa0231580;Name=Msa0231580 |
| chr2_2 | mRNA | 3857099 | 3860343 | 3857099 | ID=Msa0231580-mRNA-1;Parent=Msa0231580;Name=Msa0231580-mRNA-1;_AED=0.16;_eAED=0.16;_QI=26|0.6|0.83|0.83|0.6|0.66|6|276|241 |
| chr2_2 | exon | 3857099 | 3857442 | 3857099 | ID=Msa0231580-mRNA-1:exon:1539;Parent=Msa0231580-mRNA-1 |
| chr2_2 | exon | 3857569 | 3857682 | 3857569 | ID=Msa0231580-mRNA-1:exon:1540;Parent=Msa0231580-mRNA-1 |
| chr2_2 | exon | 3858815 | 3858913 | 3858815 | ID=Msa0231580-mRNA-1:exon:1541;Parent=Msa0231580-mRNA-1 |
| chr2_2 | exon | 3859246 | 3859320 | 3859246 | ID=Msa0231580-mRNA-1:exon:1542;Parent=Msa0231580-mRNA-1 |
| chr2_2 | exon | 3859833 | 3859879 | 3859833 | ID=Msa0231580-mRNA-1:exon:1543;Parent=Msa0231580-mRNA-1 |
| chr2_2 | exon | 3859995 | 3860343 | 3859995 | ID=Msa0231580-mRNA-1:exon:1544;Parent=Msa0231580-mRNA-1 |
| chr2_2 | five_prime_UTR | 3857099 | 3857124 | 3857099 | ID=Msa0231580-mRNA-1:five_prime_utr;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3857125 | 3857442 | 3857125 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3857569 | 3857682 | 3857569 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3858815 | 3858913 | 3858815 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3859246 | 3859320 | 3859246 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3859833 | 3859879 | 3859833 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | CDS | 3859995 | 3860067 | 3859995 | ID=Msa0231580-mRNA-1:cds;Parent=Msa0231580-mRNA-1 |
| chr2_2 | three_prime_UTR | 3860068 | 3860343 | 3860068 | ID=Msa0231580-mRNA-1:three_prime_utr;Parent=Msa0231580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
