AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1349490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349490 MtrunA17_Chr5g0397211 96.996 233 7 0 1 233 1 233 7.17e-165 454
Msa1349490 MtrunA17_Chr7g0234811 70.297 101 30 0 1 101 1 101 9.82e-41 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1349490 AT1G63970.1 83.237 173 29 0 61 233 59 231 8.71e-106 305
Msa1349490 AT1G63970.2 81.818 99 18 0 61 159 59 157 3.40e-56 177

Find 78 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 tig0010965:-3784 Msa1349490:CDS
ATTCTAGTTGCAGTATATTT+TGG 0.206229 tig0010965:-379 Msa1349490:three_prime_UTR
TTAATTCCACCAATAATTAA+AGG 0.221109 tig0010965:+3775 None:intergenic
TCACTGTTTGTTTCAGCTTC+AGG 0.284381 tig0010965:-3919 Msa1349490:CDS
TTGAGTAGATCATGTTATAT+TGG 0.285529 tig0010965:-545 Msa1349490:three_prime_UTR
CGCTTCTGTGGTAAATATAA+AGG 0.303097 tig0010965:-718 Msa1349490:CDS
AAAGAATAAGAGAATGGAAT+TGG 0.329681 tig0010965:+3982 None:intergenic
ACTAGAATGGTAGAAAATTC+TGG 0.334061 tig0010965:+394 None:intergenic
AATGATCACAACAACCAAAA+TGG 0.346987 tig0010965:+432 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 tig0010965:-834 Msa1349490:CDS
ACAAAATCTTATAGATTGTC+CGG 0.378334 tig0010965:-496 Msa1349490:three_prime_UTR
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 tig0010965:-2799 Msa1349490:CDS
TTGAAGGAGTAGCGGAGATT+GGG 0.383157 tig0010965:+3857 None:intergenic
GAAGAAATGACAGTGGAATC+TGG 0.388485 tig0010965:-622 Msa1349490:exon
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 tig0010965:+780 None:intergenic
TTTGAAGGAGTAGCGGAGAT+TGG 0.395299 tig0010965:+3856 None:intergenic
AAGAATAAGAGAATGGAATT+GGG 0.439995 tig0010965:+3983 None:intergenic
ATCGATTTCAACTGAGGCTG+TGG 0.440478 tig0010965:+3885 None:intergenic
GAATTGGGTGAGAAGATTTG+AGG 0.443328 tig0010965:+3998 None:intergenic
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 tig0010965:-2749 Msa1349490:CDS
GGTTATCCTTTAATTATTGG+TGG 0.460157 tig0010965:-3781 Msa1349490:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 tig0010965:+2719 None:intergenic
CATGAAAAGGTTGATAGCCT+TGG 0.468863 tig0010965:-687 Msa1349490:CDS
GATCACTGTGTTGGTTTAAA+CGG 0.470255 tig0010965:-346 Msa1349490:three_prime_UTR
CCCACACAAGGATGCTATCA+AGG 0.475088 tig0010965:-769 Msa1349490:CDS
TTGGTTGGTTGTTGAAGTTA+AGG 0.475515 tig0010965:+4080 None:intergenic
AGAGGAAAAGAATAAGAGAA+TGG 0.478928 tig0010965:+3976 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 tig0010965:+3826 None:intergenic
GCCTTGATAGCATCCTTGTG+TGG 0.485497 tig0010965:+768 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 tig0010965:+746 None:intergenic
TGAAGACATGGTTGGTTGGT+TGG 0.489141 tig0010965:+4065 None:intergenic
AAAATATACTGCAACTAGAA+TGG 0.495434 tig0010965:+381 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 tig0010965:+2766 None:intergenic
GACCTTCATCGATTGGAACC+TGG 0.499572 tig0010965:-3802 Msa1349490:CDS
AATTGGGTGAGAAGATTTGA+GGG 0.505339 tig0010965:+3999 None:intergenic
CCTTGATAGCATCCTTGTGT+GGG 0.507271 tig0010965:+769 None:intergenic
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 tig0010965:+3841 None:intergenic
ATTAATATACCTCATGATAG+AGG 0.512773 tig0010965:-3757 Msa1349490:CDS
GCCAACTTATCTGCACTGCT+TGG 0.513880 tig0010965:-747 Msa1349490:CDS
GATTTGAGGGATGCTGTGAA+TGG 0.528006 tig0010965:+4012 None:intergenic
TTCCTGATTCTGATCCTAAG+TGG 0.534340 tig0010965:-2768 Msa1349490:CDS
ATGATTTGAGATGGAGGGTA+TGG 0.536370 tig0010965:+3947 None:intergenic
ATTTGAGGGATGCTGTGAAT+GGG 0.539239 tig0010965:+4013 None:intergenic
TGGAATCTGGAAATATTATG+AGG 0.540881 tig0010965:-609 Msa1349490:three_prime_UTR
GTCAGACTTATGCATGAGGC+AGG 0.542152 tig0010965:-846 Msa1349490:CDS
TCGATTTCAACTGAGGCTGT+GGG 0.542972 tig0010965:+3886 None:intergenic
CCAATAATTAAAGGATAACC+AGG 0.547141 tig0010965:+3784 None:intergenic
GAATCACAACCCTTCCACTT+AGG 0.553850 tig0010965:+2754 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 tig0010965:-2764 Msa1349490:CDS
AATCTCCGCTACTCCTTCAA+AGG 0.556988 tig0010965:-3854 Msa1349490:CDS
TAAAACAATGATTAGCAGCC+CGG 0.560681 tig0010965:+477 None:intergenic
AACCAGGTTCCAATCGATGA+AGG 0.565616 tig0010965:+3800 None:intergenic
CAAAATCTTATAGATTGTCC+GGG 0.572319 tig0010965:-495 Msa1349490:three_prime_UTR
GGATTTATCGATTTCAACTG+AGG 0.577148 tig0010965:+3879 None:intergenic
CACTGTGTTGGTTTAAACGG+TGG 0.578999 tig0010965:-343 Msa1349490:three_prime_UTR
TGGAGGGTATGGTGTTTGAG+AGG 0.579851 tig0010965:+3958 None:intergenic
GTTAAAAGGGATCACTGTGT+TGG 0.586841 tig0010965:-355 Msa1349490:three_prime_UTR
TGAAGGAGTAGCGGAGATTG+GGG 0.589337 tig0010965:+3858 None:intergenic
GGTTGCGAGGCTCATTCTGA+TGG 0.591970 tig0010965:-3736 Msa1349490:intron
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 tig0010965:-730 Msa1349490:CDS
AAGATGAAGACATGGTTGGT+TGG 0.608890 tig0010965:+4061 None:intergenic
GGATGTTCTGCTTCACTGCG+TGG 0.611052 tig0010965:-2839 Msa1349490:CDS
AAGAACCTTTGAAGGAGTAG+CGG 0.614741 tig0010965:+3849 None:intergenic
TGGTGATGATTTGAGATGGA+GGG 0.617114 tig0010965:+3942 None:intergenic
ACCTCATGATAGAGGTTGCG+AGG 0.621758 tig0010965:-3749 Msa1349490:CDS
GCCGAAACTAAGCCCACACA+AGG 0.626457 tig0010965:-781 Msa1349490:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 tig0010965:-803 Msa1349490:CDS
AGAGAAGATGAAGACATGGT+TGG 0.627751 tig0010965:+4057 None:intergenic
GATTCTGATCCTAAGTGGAA+GGG 0.630398 tig0010965:-2763 Msa1349490:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 tig0010965:+3812 None:intergenic
GTGATGGTGATGATTTGAGA+TGG 0.635547 tig0010965:+3938 None:intergenic
ATGGTGATGATTTGAGATGG+AGG 0.646685 tig0010965:+3941 None:intergenic
GCCTCGCAACCTCTATCATG+AGG 0.647110 tig0010965:+3748 None:intergenic
GAGGGATGCTGTGAATGGGA+AGG 0.654559 tig0010965:+4017 None:intergenic
TTCTAATGAAGAAATGACAG+TGG 0.656226 tig0010965:-629 Msa1349490:exon
GAAGCTGAAACAAACAGTGA+TGG 0.680351 tig0010965:+3922 None:intergenic
ACAGGTCAGACTTATGCATG+AGG 0.696663 tig0010965:-850 Msa1349490:intron
TGTTAGAGAAGATGAAGACA+TGG 0.719300 tig0010965:+4053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGATTATAAAAATGAAAA+GGG + tig0010965:758-777 None:intergenic 10.0%
!! AAAAGATTATAAAAATGAAA+AGG + tig0010965:759-778 None:intergenic 10.0%
!! AAGATTATAAAAATGAAAAG+GGG + tig0010965:757-776 None:intergenic 15.0%
!!! ATCTTTCGTTAATAATTTTA+TGG + tig0010965:937-956 None:intergenic 15.0%
!! TTTGTAATTTCGAAATATTT+AGG - tig0010965:972-991 Msa1349490:intron 15.0%
!! TTGTAATTTCGAAATATTTA+GGG - tig0010965:973-992 Msa1349490:intron 15.0%
!! AATTTAGGGAATATATTAAT+AGG - tig0010965:1847-1866 Msa1349490:intron 15.0%
!!! ATTTTTCATTCTTCTAATTT+AGG - tig0010965:2135-2154 Msa1349490:intron 15.0%
!!! TTTTTCATTCTTCTAATTTA+GGG - tig0010965:2136-2155 Msa1349490:intron 15.0%
!! AAATTATTACTGAGTTAAAA+GGG - tig0010965:2226-2245 Msa1349490:intron 15.0%
!!! TTTCCTTGTAAAAAAATTTT+TGG - tig0010965:2786-2805 Msa1349490:CDS 15.0%
!!! TTCCTTGTAAAAAAATTTTT+GGG - tig0010965:2787-2806 Msa1349490:CDS 15.0%
!!! TTCTTTTTTATGTAGATATA+TGG - tig0010965:2845-2864 Msa1349490:intron 15.0%
!!! TCTTTTTTATGTAGATATAT+GGG - tig0010965:2846-2865 Msa1349490:intron 15.0%
!! CAAAATTAATACAATAAAAG+AGG + tig0010965:3390-3409 None:intergenic 15.0%
!!! CTCTTTTATTGTATTAATTT+TGG - tig0010965:3388-3407 Msa1349490:intron 15.0%
!!! TATCTATACTTGATATTTTT+AGG - tig0010965:3545-3564 Msa1349490:intron 15.0%
!!! ATCTATACTTGATATTTTTA+GGG - tig0010965:3546-3565 Msa1349490:intron 15.0%
!!! ATATGTTATGATTTTATTAC+AGG - tig0010965:3578-3597 Msa1349490:intron 15.0%
!! TTAATTCCACCAATAATTAA+AGG + tig0010965:674-693 None:intergenic 20.0%
!! AATCAAAATGACTATTAACT+CGG + tig0010965:792-811 None:intergenic 20.0%
!! AATTGAGTAAATACTCAATT+TGG + tig0010965:1539-1558 None:intergenic 20.0%
!! AATTGAGAAAATAAAGTAGA+AGG + tig0010965:1766-1785 None:intergenic 20.0%
!! ATTGAAATACAGTATGATTT+AGG - tig0010965:1783-1802 Msa1349490:intron 20.0%
!!! TTCTAATGTTGTTTGAATTT+AGG - tig0010965:1832-1851 Msa1349490:intron 20.0%
!!! TCTAATGTTGTTTGAATTTA+GGG - tig0010965:1833-1852 Msa1349490:intron 20.0%
!! GAAATTATTACTGAGTTAAA+AGG - tig0010965:2225-2244 Msa1349490:intron 20.0%
!! ATATACCTTGTATGTATATA+AGG - tig0010965:2360-2379 Msa1349490:intron 20.0%
!! TATACCTTGTATGTATATAA+GGG - tig0010965:2361-2380 Msa1349490:intron 20.0%
!!! CTTTTTTGTTTGGTATAATA+CGG + tig0010965:2563-2582 None:intergenic 20.0%
!! AAACCAATCAGTTTAAATAT+GGG + tig0010965:2670-2689 None:intergenic 20.0%
!! ATATATGCCTGTTTAAATAA+GGG + tig0010965:2700-2719 None:intergenic 20.0%
!! AATATATGCCTGTTTAAATA+AGG + tig0010965:2701-2720 None:intergenic 20.0%
!!! TACCCAAAAATTTTTTTACA+AGG + tig0010965:2792-2811 None:intergenic 20.0%
!!! GTATCTGAATTGTTTAAAAT+AGG + tig0010965:3098-3117 None:intergenic 20.0%
!!! AAAAATAGCAAAGTTTTGTT+TGG + tig0010965:3305-3324 None:intergenic 20.0%
!! ATGGTTGTACAAATTATATT+TGG - tig0010965:3478-3497 Msa1349490:intron 20.0%
!!! AGTATATTTTGGTGTTAAAA+GGG - tig0010965:4078-4097 Msa1349490:five_prime_UTR 20.0%
! AGATTACTGTTGTGAAAAAA+TGG + tig0010965:346-365 None:intergenic 25.0%
! AAGAATAAGAGAATGGAATT+GGG + tig0010965:466-485 None:intergenic 25.0%
! AAAGAATAAGAGAATGGAAT+TGG + tig0010965:467-486 None:intergenic 25.0%
! ATTAATATACCTCATGATAG+AGG - tig0010965:689-708 Msa1349490:CDS 25.0%
!! GTTAGTTAGTGAATATTTTC+TGG - tig0010965:898-917 Msa1349490:intron 25.0%
! CTCAAAATTATTATCGACAT+CGG - tig0010965:1245-1264 Msa1349490:intron 25.0%
! CAAGATAGTTTATGAGAAAA+CGG + tig0010965:1406-1425 None:intergenic 25.0%
!!! TTTATTTTCATAAGCTGTTC+TGG - tig0010965:1456-1475 Msa1349490:intron 25.0%
! AAAAAATAAGCCAATCCAAA+TGG - tig0010965:1486-1505 Msa1349490:intron 25.0%
! AAAAATAAGCCAATCCAAAT+GGG - tig0010965:1487-1506 Msa1349490:intron 25.0%
!! ATGATGATGAAATATGAACA+GGG - tig0010965:1585-1604 Msa1349490:intron 25.0%
! ACAGAACAAACAAATCATTA+CGG + tig0010965:1887-1906 None:intergenic 25.0%
! CCATGAATAATTCATTGAAA+TGG + tig0010965:1924-1943 None:intergenic 25.0%
! CCATTTCAATGAATTATTCA+TGG - tig0010965:1921-1940 Msa1349490:intron 25.0%
! ACTTTATTATTGAACGAGTT+TGG - tig0010965:2179-2198 Msa1349490:intron 25.0%
! AAATAATGACATGAGTTAAC+AGG - tig0010965:2288-2307 Msa1349490:intron 25.0%
! ATACATACAAGGTATATGAT+TGG + tig0010965:2357-2376 None:intergenic 25.0%
!!! CTGTGTTCAGTTTTTTTAAA+GGG - tig0010965:2390-2409 Msa1349490:intron 25.0%
!!! TGTGTTCAGTTTTTTTAAAG+GGG - tig0010965:2391-2410 Msa1349490:intron 25.0%
!!! AAACATCTCTCTTTTTTGTT+TGG + tig0010965:2573-2592 None:intergenic 25.0%
! CAAACCAATCAGTTTAAATA+TGG + tig0010965:2671-2690 None:intergenic 25.0%
!!! GTGAATAAAAGCTTTTTCTT+CGG + tig0010965:3043-3062 None:intergenic 25.0%
! TTTAATAACTGCTAAACACA+TGG + tig0010965:3426-3445 None:intergenic 25.0%
! TTGAGTAGATCATGTTATAT+TGG - tig0010965:3901-3920 Msa1349490:CDS 25.0%
! ACAAAATCTTATAGATTGTC+CGG - tig0010965:3950-3969 Msa1349490:CDS 25.0%
!! GTCAAATTTTGTAACCATTT+TGG - tig0010965:4000-4019 Msa1349490:CDS 25.0%
! AAAATATACTGCAACTAGAA+TGG + tig0010965:4068-4087 None:intergenic 25.0%
!!! ATTCTAGTTGCAGTATATTT+TGG - tig0010965:4067-4086 Msa1349490:exon 25.0%
!!! CAGTATATTTTGGTGTTAAA+AGG - tig0010965:4077-4096 Msa1349490:five_prime_UTR 25.0%
AGAGGAAAAGAATAAGAGAA+TGG + tig0010965:473-492 None:intergenic 30.0%
CCAATAATTAAAGGATAACC+AGG + tig0010965:665-684 None:intergenic 30.0%
CCTGGTTATCCTTTAATTAT+TGG - tig0010965:662-681 Msa1349490:CDS 30.0%
GGTTATCCTTTAATTATTGG+TGG - tig0010965:665-684 Msa1349490:CDS 30.0%
TATAAAAATGAAAAGGGGCA+TGG + tig0010965:752-771 None:intergenic 30.0%
!! ATAAGTTAGTTGATAGTGGA+TGG - tig0010965:1033-1052 Msa1349490:intron 30.0%
GTCTAATCACAAACTTACAA+TGG + tig0010965:1134-1153 None:intergenic 30.0%
TGTAAGTTTGTGATTAGACA+CGG - tig0010965:1135-1154 Msa1349490:intron 30.0%
TCAATTTGGTATAGAGTTGT+TGG + tig0010965:1525-1544 None:intergenic 30.0%
! CATGATGATGAAATATGAAC+AGG - tig0010965:1584-1603 Msa1349490:intron 30.0%
! TGATGATGAAATATGAACAG+GGG - tig0010965:1586-1605 Msa1349490:intron 30.0%
AGAATATACTCACAGATTCA+TGG + tig0010965:1730-1749 None:intergenic 30.0%
CTGAAAACACAATTACACTA+AGG + tig0010965:1809-1828 None:intergenic 30.0%
AAATCATTACGGTGAACATT+TGG + tig0010965:1876-1895 None:intergenic 30.0%
ATGCAGTGTTAGAACTTAAA+TGG - tig0010965:1975-1994 Msa1349490:intron 30.0%
AAAGTATAAGCATGATAGGA+AGG - tig0010965:2003-2022 Msa1349490:intron 30.0%
TTCGGATTGTTAGAATAAGA+TGG - tig0010965:2072-2091 Msa1349490:intron 30.0%
TGAAAAATAGATGTAGCAGA+TGG + tig0010965:2123-2142 None:intergenic 30.0%
ATTACTGAGTTAAAAGGGTA+AGG - tig0010965:2231-2250 Msa1349490:intron 30.0%
GATTCCCTTATATACATACA+AGG + tig0010965:2368-2387 None:intergenic 30.0%
!!! GCTGTGTTCAGTTTTTTTAA+AGG - tig0010965:2389-2408 Msa1349490:intron 30.0%
!!! TTCAGTTTTTTTAAAGGGGA+CGG - tig0010965:2395-2414 Msa1349490:intron 30.0%
AACATTTCGTGTGGTATTTA+AGG + tig0010965:2485-2504 None:intergenic 30.0%
TACCACACGAAATGTTAAAA+TGG - tig0010965:2489-2508 Msa1349490:intron 30.0%
! GCATAATCCCTTATTTAAAC+AGG - tig0010965:2690-2709 Msa1349490:intron 30.0%
CATACATATGTGAGTTCAAA+AGG - tig0010965:2732-2751 Msa1349490:CDS 30.0%
AGTAAAACATGCACATTAGT+AGG + tig0010965:2766-2785 None:intergenic 30.0%
TTCATCAAACCCATTTAATC+CGG - tig0010965:2885-2904 Msa1349490:intron 30.0%
TGTCACAAACTAACATACAT+AGG - tig0010965:2908-2927 Msa1349490:intron 30.0%
!! TGAACTCATTCTCTACTTTT+TGG + tig0010965:3183-3202 None:intergenic 30.0%
AAAAGTAGAGAATGAGTTCA+AGG - tig0010965:3183-3202 Msa1349490:intron 30.0%
! GATTTTCTTTTGACGTATGA+TGG - tig0010965:3459-3478 Msa1349490:intron 30.0%
!!! GTTACTGAAAGTGTTTTCTT+AGG - tig0010965:3500-3519 Msa1349490:intron 30.0%
AAAGGCAAAAACTCATGAAA+AGG - tig0010965:3746-3765 Msa1349490:CDS 30.0%
! CTATACTTCTATTTTCTCCA+AGG + tig0010965:3779-3798 None:intergenic 30.0%
TTCTAATGAAGAAATGACAG+TGG - tig0010965:3817-3836 Msa1349490:CDS 30.0%
TGGAATCTGGAAATATTATG+AGG - tig0010965:3837-3856 Msa1349490:CDS 30.0%
CAAAATCTTATAGATTGTCC+GGG - tig0010965:3951-3970 Msa1349490:CDS 30.0%
AATGATCACAACAACCAAAA+TGG + tig0010965:4017-4036 None:intergenic 30.0%
ACTAGAATGGTAGAAAATTC+TGG + tig0010965:4055-4074 None:intergenic 30.0%
! TTGGTTGGTTGTTGAAGTTA+AGG + tig0010965:369-388 None:intergenic 35.0%
TGTTAGAGAAGATGAAGACA+TGG + tig0010965:396-415 None:intergenic 35.0%
AATTGGGTGAGAAGATTTGA+GGG + tig0010965:450-469 None:intergenic 35.0%
!! GGATTTATCGATTTCAACTG+AGG + tig0010965:570-589 None:intergenic 35.0%
! CTTCAAAGGTTCTTCCTTTT+CGG - tig0010965:606-625 Msa1349490:three_prime_UTR 35.0%
! TTCAAAGGTTCTTCCTTTTC+GGG - tig0010965:607-626 Msa1349490:three_prime_UTR 35.0%
!! GTGGATAAGTTAGTTGATAG+TGG - tig0010965:1029-1048 Msa1349490:intron 35.0%
ATGAAGCACAAACATAGACA+CGG + tig0010965:1286-1305 None:intergenic 35.0%
GGAAAAATCTGTCCTATATC+AGG + tig0010965:1662-1681 None:intergenic 35.0%
CGCTAAAGTATAAGCATGAT+AGG - tig0010965:1999-2018 Msa1349490:intron 35.0%
GGAAAGACATTGTCATTGTT+CGG - tig0010965:2054-2073 Msa1349490:intron 35.0%
! TTCTTCTAATTTAGGGTGCA+TGG - tig0010965:2143-2162 Msa1349490:intron 35.0%
!!! TCAGTTTTTTTAAAGGGGAC+GGG - tig0010965:2396-2415 Msa1349490:intron 35.0%
!! CACCATTTTAACATTTCGTG+TGG + tig0010965:2494-2513 None:intergenic 35.0%
AGGCCCATATTTAAACTGAT+TGG - tig0010965:2664-2683 Msa1349490:intron 35.0%
TTTGTGACACCGGATTAAAT+GGG + tig0010965:2897-2916 None:intergenic 35.0%
!! TGTATGTTAGTTTGTGACAC+CGG + tig0010965:2907-2926 None:intergenic 35.0%
CTAACATACATAGGATCACA+AGG - tig0010965:2917-2936 Msa1349490:intron 35.0%
ACAAGGTCAGCTATTTAACT+GGG - tig0010965:2934-2953 Msa1349490:intron 35.0%
TGTATCATGTGTGTATGTTG+AGG + tig0010965:3003-3022 None:intergenic 35.0%
CTTCGGAAATGACATATTTG+AGG + tig0010965:3026-3045 None:intergenic 35.0%
TCTCACTTCTGAATACTGTT+AGG + tig0010965:3231-3250 None:intergenic 35.0%
TATCAGTCAAGTGTGTAACA+GGG - tig0010965:3259-3278 Msa1349490:intron 35.0%
ATAAAAGAGGAGTCACTGTT+AGG + tig0010965:3377-3396 None:intergenic 35.0%
CTAAACACATGGTAAATGCA+GGG + tig0010965:3415-3434 None:intergenic 35.0%
ATGCAACATTGATACTTCAG+AGG - tig0010965:3643-3662 Msa1349490:intron 35.0%
CGCTTCTGTGGTAAATATAA+AGG - tig0010965:3728-3747 Msa1349490:intron 35.0%
TAAAACAATGATTAGCAGCC+CGG + tig0010965:3972-3991 None:intergenic 35.0%
!! GATCACTGTGTTGGTTTAAA+CGG - tig0010965:4100-4119 Msa1349490:five_prime_UTR 35.0%
AAGATGAAGACATGGTTGGT+TGG + tig0010965:388-407 None:intergenic 40.0%
AGAGAAGATGAAGACATGGT+TGG + tig0010965:392-411 None:intergenic 40.0%
ATTTGAGGGATGCTGTGAAT+GGG + tig0010965:436-455 None:intergenic 40.0%
GAATTGGGTGAGAAGATTTG+AGG + tig0010965:451-470 None:intergenic 40.0%
! ATGATTTGAGATGGAGGGTA+TGG + tig0010965:502-521 None:intergenic 40.0%
! TGGTGATGATTTGAGATGGA+GGG + tig0010965:507-526 None:intergenic 40.0%
! ATGGTGATGATTTGAGATGG+AGG + tig0010965:508-527 None:intergenic 40.0%
! GTGATGGTGATGATTTGAGA+TGG + tig0010965:511-530 None:intergenic 40.0%
GAAGCTGAAACAAACAGTGA+TGG + tig0010965:527-546 None:intergenic 40.0%
TCACTGTTTGTTTCAGCTTC+AGG - tig0010965:527-546 Msa1349490:three_prime_UTR 40.0%
! AAGAACCTTTGAAGGAGTAG+CGG + tig0010965:600-619 None:intergenic 40.0%
CGAAAAGGAAGAACCTTTGA+AGG + tig0010965:608-627 None:intergenic 40.0%
ATCGATGAAGGTCAAAACCA+TGG + tig0010965:637-656 None:intergenic 40.0%
!!! TGGTTTTGACCTTCATCGAT+TGG - tig0010965:637-656 Msa1349490:CDS 40.0%
TTAGGGACTATGACTCTGTT+TGG - tig0010965:990-1009 Msa1349490:intron 40.0%
CTCTGTTTGGTAGAAAGTAG+TGG - tig0010965:1003-1022 Msa1349490:intron 40.0%
!! TGGTAGAAAGTAGTGGATAG+TGG - tig0010965:1010-1029 Msa1349490:intron 40.0%
TCCACAAATTAGGTGTGTTC+CGG - tig0010965:1162-1181 Msa1349490:intron 40.0%
GTAATCATATGTGCCAGTGT+AGG + tig0010965:1207-1226 None:intergenic 40.0%
AGAGTTGTTGGCAAGATCTT+AGG + tig0010965:1513-1532 None:intergenic 40.0%
!! TGCGTGGTTGATGCAATTTT+AGG - tig0010965:1623-1642 Msa1349490:intron 40.0%
!! GCGTGGTTGATGCAATTTTA+GGG - tig0010965:1624-1643 Msa1349490:intron 40.0%
!! CGTGGTTGATGCAATTTTAG+GGG - tig0010965:1625-1644 Msa1349490:intron 40.0%
!! GATGCAATTTTAGGGGCTTT+AGG - tig0010965:1632-1651 Msa1349490:intron 40.0%
! GCTTTAGGTCTTCCTGATAT+AGG - tig0010965:1647-1666 Msa1349490:intron 40.0%
TTCCTGATTCTGATCCTAAG+TGG - tig0010965:1678-1697 Msa1349490:intron 40.0%
TTCCACTTAGGATCAGAATC+AGG + tig0010965:1683-1702 None:intergenic 40.0%
TGATTCTGATCCTAAGTGGA+AGG - tig0010965:1682-1701 Msa1349490:intron 40.0%
GATTCTGATCCTAAGTGGAA+GGG - tig0010965:1683-1702 Msa1349490:intron 40.0%
CTTAGAAGAGATTAGCGCTT+TGG - tig0010965:2255-2274 Msa1349490:intron 40.0%
ATTAGCGCTTTGGTTAACAG+TGG - tig0010965:2265-2284 Msa1349490:intron 40.0%
! TCTATTCGGTTCTAACAGAG+GGG + tig0010965:2601-2620 None:intergenic 40.0%
! GTCTATTCGGTTCTAACAGA+GGG + tig0010965:2602-2621 None:intergenic 40.0%
CATATGTGAGTTCAAAAGGC+CGG - tig0010965:2736-2755 Msa1349490:CDS 40.0%
GTTTGTGACACCGGATTAAA+TGG + tig0010965:2898-2917 None:intergenic 40.0%
CACAAGGTCAGCTATTTAAC+TGG - tig0010965:2933-2952 Msa1349490:intron 40.0%
GTATGTTGAGGTGAGTACAA+GGG + tig0010965:2991-3010 None:intergenic 40.0%
TGTATGTTGAGGTGAGTACA+AGG + tig0010965:2992-3011 None:intergenic 40.0%
CTATCAGTCAAGTGTGTAAC+AGG - tig0010965:3258-3277 Msa1349490:intron 40.0%
GCTAAACACATGGTAAATGC+AGG + tig0010965:3416-3435 None:intergenic 40.0%
CATGAGGCAGGTTATGATAT+TGG - tig0010965:3612-3631 Msa1349490:intron 40.0%
!! CATGAAAAGGTTGATAGCCT+TGG - tig0010965:3759-3778 Msa1349490:CDS 40.0%
GAAGAAATGACAGTGGAATC+TGG - tig0010965:3824-3843 Msa1349490:CDS 40.0%
GTTAAAAGGGATCACTGTGT+TGG - tig0010965:4091-4110 Msa1349490:five_prime_UTR 40.0%
! TGAAGACATGGTTGGTTGGT+TGG + tig0010965:384-403 None:intergenic 45.0%
GATTTGAGGGATGCTGTGAA+TGG + tig0010965:437-456 None:intergenic 45.0%
TCGATTTCAACTGAGGCTGT+GGG + tig0010965:563-582 None:intergenic 45.0%
! ATCGATTTCAACTGAGGCTG+TGG + tig0010965:564-583 None:intergenic 45.0%
! TTGAAGGAGTAGCGGAGATT+GGG + tig0010965:592-611 None:intergenic 45.0%
! TTTGAAGGAGTAGCGGAGAT+TGG + tig0010965:593-612 None:intergenic 45.0%
AATCTCCGCTACTCCTTCAA+AGG - tig0010965:592-611 Msa1349490:three_prime_UTR 45.0%
!!! AAGGTTCTTCCTTTTCGGGT+TGG - tig0010965:611-630 Msa1349490:three_prime_UTR 45.0%
AACCAGGTTCCAATCGATGA+AGG + tig0010965:649-668 None:intergenic 45.0%
GCAGATAAGCTAGCTGATAG+TGG - tig0010965:1063-1082 Msa1349490:intron 45.0%
ACACGGACACTCCACAAATT+AGG - tig0010965:1152-1171 Msa1349490:intron 45.0%
ACCGGAACACACCTAATTTG+TGG + tig0010965:1166-1185 None:intergenic 45.0%
AATTAGGTGTGTTCCGGTGT+CGG - tig0010965:1168-1187 Msa1349490:intron 45.0%
ACAAACATAGACACGGACAC+GGG + tig0010965:1279-1298 None:intergenic 45.0%
CACAAACATAGACACGGACA+CGG + tig0010965:1280-1299 None:intergenic 45.0%
GATCTTAGGCCCATTTGGAT+TGG + tig0010965:1499-1518 None:intergenic 45.0%
GAATCACAACCCTTCCACTT+AGG + tig0010965:1695-1714 None:intergenic 45.0%
GTGGAAGGGTTGTGATTCTT+CGG - tig0010965:1697-1716 Msa1349490:intron 45.0%
! GAAGGTATGCCTTGCAATCA+GGG - tig0010965:2021-2040 Msa1349490:intron 45.0%
! GGTCTATTCGGTTCTAACAG+AGG + tig0010965:2603-2622 None:intergenic 45.0%
AGAACCGAATAGACCTGTAG+AGG - tig0010965:2608-2627 Msa1349490:intron 45.0%
AAATATGGGCCTATGCTGAC+TGG + tig0010965:2656-2675 None:intergenic 45.0%
ATGCACATTAGTAGGCAGAC+CGG + tig0010965:2758-2777 None:intergenic 45.0%
ACAAGGGCTAACGGTTGTTT+GGG + tig0010965:2975-2994 None:intergenic 45.0%
TACAAGGGCTAACGGTTGTT+TGG + tig0010965:2976-2995 None:intergenic 45.0%
ACAGGTCAGACTTATGCATG+AGG - tig0010965:3596-3615 Msa1349490:intron 45.0%
TCCTTGTGTGGGCTTAGTTT+CGG + tig0010965:3669-3688 None:intergenic 45.0%
! CCTTGATAGCATCCTTGTGT+GGG + tig0010965:3680-3699 None:intergenic 45.0%
TCCAAGCAGTGCAGATAAGT+TGG + tig0010965:3703-3722 None:intergenic 45.0%
!! CACTGTGTTGGTTTAAACGG+TGG - tig0010965:4103-4122 Msa1349490:five_prime_UTR 45.0%
!! ATTAAATAAATTTGATTATA+CGG - tig0010965:1098-1117 Msa1349490:intron 5.0%
! TGGAGGGTATGGTGTTTGAG+AGG + tig0010965:491-510 None:intergenic 50.0%
! TGAAGGAGTAGCGGAGATTG+GGG + tig0010965:591-610 None:intergenic 50.0%
AAACCATGGCCAACCCGAAA+AGG + tig0010965:623-642 None:intergenic 50.0%
! GACCTTCATCGATTGGAACC+TGG - tig0010965:644-663 Msa1349490:CDS 50.0%
ACCTCATGATAGAGGTTGCG+AGG - tig0010965:697-716 Msa1349490:CDS 50.0%
GGCAAGATCTTAGGCCCATT+TGG + tig0010965:1504-1523 None:intergenic 50.0%
! GGAAGGTATGCCTTGCAATC+AGG - tig0010965:2020-2039 Msa1349490:intron 50.0%
TTCCACTGTCCCTGATTGCA+AGG + tig0010965:2033-2052 None:intergenic 50.0%
TGCAATCAGGGACAGTGGAA+TGG - tig0010965:2033-2052 Msa1349490:intron 50.0%
ACCGAATAGACCTGTAGAGG+CGG - tig0010965:2611-2630 Msa1349490:intron 50.0%
GAGGTGAGTACAAGGGCTAA+CGG + tig0010965:2984-3003 None:intergenic 50.0%
GTCAGACTTATGCATGAGGC+AGG - tig0010965:3600-3619 Msa1349490:intron 50.0%
CCCACACAAGGATGCTATCA+AGG - tig0010965:3677-3696 Msa1349490:intron 50.0%
! GCCTTGATAGCATCCTTGTG+TGG + tig0010965:3681-3700 None:intergenic 50.0%
GCCAACTTATCTGCACTGCT+TGG - tig0010965:3699-3718 Msa1349490:intron 50.0%
GAGGGATGCTGTGAATGGGA+AGG + tig0010965:432-451 None:intergenic 55.0%
!!! CTTCCTTTTCGGGTTGGCCA+TGG - tig0010965:617-636 Msa1349490:exon 55.0%
GCCTCGCAACCTCTATCATG+AGG + tig0010965:701-720 None:intergenic 55.0%
GGTTGCGAGGCTCATTCTGA+TGG - tig0010965:710-729 Msa1349490:CDS 55.0%
ACACGCTTCGCTTCCTACAC+TGG - tig0010965:1191-1210 Msa1349490:intron 55.0%
GGATGTTCTGCTTCACTGCG+TGG - tig0010965:1607-1626 Msa1349490:intron 55.0%
TGCCTTGCAATCAGGGACAG+TGG - tig0010965:2028-2047 Msa1349490:intron 55.0%
TAAAGGGGACGGGAGAAGAG+AGG - tig0010965:2406-2425 Msa1349490:intron 55.0%
CCCGCCTCTACAGGTCTATT+CGG + tig0010965:2615-2634 None:intergenic 55.0%
CCGAATAGACCTGTAGAGGC+GGG - tig0010965:2612-2631 Msa1349490:intron 55.0%
GTATGCATACCCGCCTCTAC+AGG + tig0010965:2624-2643 None:intergenic 55.0%
GCCGAAACTAAGCCCACACA+AGG - tig0010965:3665-3684 Msa1349490:intron 55.0%
GCTTGGAGTTGACGCTTCTG+TGG - tig0010965:3716-3735 Msa1349490:intron 55.0%
AAGCGAAGCGTGTCCGACAC+CGG + tig0010965:1184-1203 None:intergenic 60.0%
! CTATGCTGACTGGTGCGAGC+TGG + tig0010965:2646-2665 None:intergenic 60.0%
CAGCTCGCACCAGTCAGCAT+AGG - tig0010965:2644-2663 Msa1349490:intron 60.0%
GGGGACGGGAGAAGAGAGGA+AGG - tig0010965:2410-2429 Msa1349490:intron 65.0%
Chromosome Type Strat End Strand Name
tig0010965 gene 333 4135 333 ID=Msa1349490;Name=Msa1349490
tig0010965 mRNA 333 4135 333 ID=Msa1349490-mRNA-1;Parent=Msa1349490;Name=Msa1349490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=62|1|1|1|1|1|3|302|233
tig0010965 exon 333 868 333 ID=Msa1349490-mRNA-1:exon:6956;Parent=Msa1349490-mRNA-1
tig0010965 exon 2732 2862 2732 ID=Msa1349490-mRNA-1:exon:6955;Parent=Msa1349490-mRNA-1
tig0010965 exon 3737 4135 3737 ID=Msa1349490-mRNA-1:exon:6954;Parent=Msa1349490-mRNA-1
tig0010965 five_prime_UTR 4074 4135 4074 ID=Msa1349490-mRNA-1:five_prime_utr;Parent=Msa1349490-mRNA-1
tig0010965 CDS 3737 4073 3737 ID=Msa1349490-mRNA-1:cds;Parent=Msa1349490-mRNA-1
tig0010965 CDS 2732 2862 2732 ID=Msa1349490-mRNA-1:cds;Parent=Msa1349490-mRNA-1
tig0010965 CDS 635 868 635 ID=Msa1349490-mRNA-1:cds;Parent=Msa1349490-mRNA-1
tig0010965 three_prime_UTR 333 634 333 ID=Msa1349490-mRNA-1:three_prime_utr;Parent=Msa1349490-mRNA-1
Gene Sequence

>Msa1349490

ATGTCTTCATCTTCTCTAACAGCATCTTCTTACTCCTTCCCATTCACAGCATCCCTCAAATCTTCTCACCCAATTCCATTCTCTTATTCTTTTCCTCTCAAACACCATACCCTCCATCTCAAATCATCACCATCACTGTTTGTTTCAGCTTCAGGAGCTGCAACACCCACAGCCTCAGTTGAAATCGATAAATCCCCAATCTCCGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGCGAGGCTCATTCTGATGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>Msa1349490

MSSSSLTASSYSFPFTASLKSSHPIPFSYSFPLKHHTLHLKSSPSLFVSASGAATPTASVEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK*