AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0231590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231590 MtrunA17_Chr2g0278271 96.758 401 12 1 1 401 1 400 0.0 795
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0231590 AT1G33270.1 67.222 360 97 3 40 390 13 360 1.72e-174 491
Msa0231590 AT1G33270.2 66.899 287 74 3 40 317 13 287 1.83e-134 387

Find 143 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTTAATATTTACAAAAT+AGG 0.150928 2_2:+3865725 Msa0231590:three_prime_UTR
AGACATTTGGAATAGTTATT+TGG 0.195790 2_2:+3865941 Msa0231590:three_prime_UTR
CAATTATGCTACCCTTTAAA+AGG 0.224023 2_2:+3865548 Msa0231590:three_prime_UTR
TTGCTGTAACACAGCTTCTT+TGG 0.250898 2_2:+3864094 Msa0231590:CDS
CTTCTCTTTCCTTATCATCT+TGG 0.258626 2_2:+3861701 Msa0231590:CDS
TATTTAATATTTACAAAATA+GGG 0.273161 2_2:+3865726 Msa0231590:three_prime_UTR
CTCTTCTCCGTTCACGCAAA+TGG 0.277244 2_2:+3861214 Msa0231590:exon
TATTCAAAATGGTTACATTA+AGG 0.286836 2_2:+3861739 Msa0231590:CDS
GTCTGTGCTGTAGTTGCTTC+TGG 0.289468 2_2:+3862836 Msa0231590:CDS
CTTGACCGACTCTTTGAGTT+TGG 0.293311 2_2:+3865381 Msa0231590:CDS
TTTACTTCTTCCTTTATTCC+AGG 0.293412 2_2:+3864177 Msa0231590:CDS
TTTGATAGCTACTAAAATAT+TGG 0.304460 2_2:+3862877 Msa0231590:CDS
TCCGCAGTTCCTAACTTCTA+AGG 0.305657 2_2:+3865600 Msa0231590:three_prime_UTR
GATATCTTGATGCTGCTGTC+TGG 0.307350 2_2:+3865403 Msa0231590:CDS
AAAACACTTGTCTAATCATT+TGG 0.311342 2_2:+3865980 Msa0231590:three_prime_UTR
CCTCCCTCCAATGATAATTA+AGG 0.315731 2_2:-3865577 None:intergenic
AGATTCAACCTGATGTGATT+TGG 0.334321 2_2:+3861597 Msa0231590:CDS
TTGGAGACCCAGGGGTTTGT+TGG 0.335292 2_2:+3864113 Msa0231590:CDS
CATTGTACAATAGCACATTA+TGG 0.336247 2_2:+3865491 Msa0231590:exon
AGAGAGAATTGGTGCTGTTA+TGG 0.341595 2_2:+3861568 Msa0231590:CDS
TCTTCTCCGTTCACGCAAAT+GGG 0.342480 2_2:+3861215 Msa0231590:exon
CGAAATCGTTTATGCATTGA+TGG 0.343466 2_2:+3864323 Msa0231590:CDS
GAACTTACAAAAGTAGATTA+TGG 0.347245 2_2:+3866005 Msa0231590:three_prime_UTR
AACAAATCACCCTGGAATAA+AGG 0.350115 2_2:-3864187 None:intergenic
CGAAACATCGTAGCTGGCTT+TGG 0.362210 2_2:-3864302 None:intergenic
GACATCACCTTAATTATCAT+TGG 0.363801 2_2:+3865570 Msa0231590:three_prime_UTR
GACGTTCATATAAGATCTAA+TGG 0.364869 2_2:+3863760 Msa0231590:CDS
TTTGTCATCCATAGGGAAAC+TGG 0.381622 2_2:-3865811 None:intergenic
CCATTAGCTGGTTCTTCTGC+TGG 0.395305 2_2:+3862806 Msa0231590:CDS
CCCTATGGATGACAAAGTTA+TGG 0.399539 2_2:+3865818 Msa0231590:three_prime_UTR
TGCATTGATGAGATCTTCCT+TGG 0.414782 2_2:-3864151 None:intergenic
TTGTAAACTAAGGAGACATT+TGG 0.421306 2_2:+3865928 Msa0231590:three_prime_UTR
GGGGACTGCATTTCGGCTGG+GGG 0.428347 2_2:+3862919 Msa0231590:CDS
GATTCAACCTGATGTGATTT+GGG 0.433059 2_2:+3861598 Msa0231590:CDS
TTGGGGAAAATTGTAAACTA+AGG 0.434184 2_2:+3865918 Msa0231590:three_prime_UTR
GAGACCCAGGGGTTTGTTGG+TGG 0.434625 2_2:+3864116 Msa0231590:CDS
GTCACCGGAGAACTCTTCTT+AGG 0.440629 2_2:+3861452 Msa0231590:CDS
TGAGATGAAGAAGGAGGAGA+TGG 0.442668 2_2:-3861258 None:intergenic
GATCTTATATGAACGTCATC+TGG 0.445330 2_2:-3863754 None:intergenic
AAGGAGGAGATGGATGGAGT+TGG 0.447255 2_2:-3861248 None:intergenic
TGCAATCCCATACGACCTGC+TGG 0.448491 2_2:-3865178 None:intergenic
AGAAAAGTTGTAACTACTCC+TGG 0.458445 2_2:+3861656 Msa0231590:CDS
CAGGAAACCACGCCATTAGC+TGG 0.458530 2_2:+3862794 Msa0231590:intron
CTCTGCTCCCAAATCACATC+AGG 0.461065 2_2:-3861605 None:intergenic
AGAGTGAGGTTAACGTCGTT+AGG 0.461158 2_2:-3861326 None:intergenic
ATTTATAGCCAGTTTCCCTA+TGG 0.461255 2_2:+3865803 Msa0231590:three_prime_UTR
TACAATGGGAAAGAGAGAAT+TGG 0.465947 2_2:+3861557 Msa0231590:CDS
GATACTACTGCTCCTGCATT+CGG 0.466890 2_2:+3865462 Msa0231590:CDS
TGAGCAACACCAAGATGATA+AGG 0.474367 2_2:-3861710 None:intergenic
TTACTTCTTCCTTTATTCCA+GGG 0.476147 2_2:+3864178 Msa0231590:CDS
AGGAGAGGGAGAAGGAGTTG+TGG 0.480729 2_2:-3861399 None:intergenic
TCCTTCTCCCTCTCCTCCGC+CGG 0.482267 2_2:+3861406 Msa0231590:CDS
CGTCGTTAGGGAAACGGAAA+CGG 0.485989 2_2:-3861313 None:intergenic
ATATCTTGATGCTGCTGTCT+GGG 0.486047 2_2:+3865404 Msa0231590:CDS
ATGAAGAAGGAGGAGATGGA+TGG 0.489641 2_2:-3861254 None:intergenic
GCGTTCTCGGGATTACAATC+TGG 0.491090 2_2:-3865217 None:intergenic
AAAATTCAGGGATACCTGAC+GGG 0.496920 2_2:-3865248 None:intergenic
AAATATTGGCTGAAGATTGT+CGG 0.498682 2_2:+3862891 Msa0231590:CDS
CCAGCAGAAGAACCAGCTAA+TGG 0.499103 2_2:-3862806 None:intergenic
ACCGACATCTGCAGCACAAA+CGG 0.500017 2_2:+3864367 Msa0231590:CDS
ATGCACCCCATTTGCGTGAA+CGG 0.505081 2_2:-3861221 None:intergenic
CGATTTCGAAACATCGTAGC+TGG 0.507412 2_2:-3864308 None:intergenic
GAAATCGTTTATGCATTGAT+GGG 0.509760 2_2:+3864324 Msa0231590:CDS
ATCACCTTAATTATCATTGG+AGG 0.510078 2_2:+3865573 Msa0231590:three_prime_UTR
TGGCTGAAGATTGTCGGAAG+GGG 0.511558 2_2:+3862897 Msa0231590:CDS
CACAGCTTCTTTGGAGACCC+AGG 0.512275 2_2:+3864103 Msa0231590:CDS
GTTCAACGGTAATGTACAAT+GGG 0.514808 2_2:+3861543 Msa0231590:CDS
AATTTGTTTCTGAATATCAC+AGG 0.517161 2_2:-3865867 None:intergenic
CGTATGGGATTGCAAGGGAT+AGG 0.518266 2_2:+3865187 Msa0231590:CDS
CTGATCCACCAACAAACCCC+TGG 0.519698 2_2:-3864121 None:intergenic
TATTGCGATAGAATTCTTGC+TGG 0.520803 2_2:+3865665 Msa0231590:three_prime_UTR
ACAATGCTATTTCCGAATGC+AGG 0.521454 2_2:-3865474 None:intergenic
TTGAGAAGGTGAGATGAAGA+AGG 0.521623 2_2:-3861267 None:intergenic
GAGTGAGGTTAACGTCGTTA+GGG 0.521955 2_2:-3861325 None:intergenic
ACGTTCATATAAGATCTAAT+GGG 0.522976 2_2:+3863761 Msa0231590:CDS
GGTGGATCAGTTTGATTCCA+AGG 0.522998 2_2:+3864134 Msa0231590:CDS
AGATCTAATGGGAGAGTTCG+AGG 0.526204 2_2:+3863772 Msa0231590:CDS
AAATCCTTCGCCGTCGTCAC+CGG 0.526789 2_2:+3861437 Msa0231590:CDS
AGAAGGTGAGATGAAGAAGG+AGG 0.531067 2_2:-3861264 None:intergenic
GTATGGGATTGCAAGGGATA+GGG 0.532482 2_2:+3865188 Msa0231590:CDS
AGTTGCTTCTGGAGCTAGCA+TGG 0.537640 2_2:+3862847 Msa0231590:CDS
TTGTACATTACCGTTGAACT+CGG 0.542685 2_2:-3861539 None:intergenic
TCGCCACCGGAGTCGATTCG+CGG 0.550243 2_2:-3861499 None:intergenic
CCATAACTTTGTCATCCATA+GGG 0.555512 2_2:-3865818 None:intergenic
TATACCTAAGAAGAGTTCTC+CGG 0.556170 2_2:-3861456 None:intergenic
TCCGGCGGAGGAGAGGGAGA+AGG 0.558004 2_2:-3861407 None:intergenic
GGTTAACGTCGTTAGGGAAA+CGG 0.558708 2_2:-3861319 None:intergenic
CCGCAGTTCCTAACTTCTAA+GGG 0.559472 2_2:+3865601 Msa0231590:three_prime_UTR
GGCTGAAGATTGTCGGAAGG+GGG 0.561976 2_2:+3862898 Msa0231590:CDS
TTAATATTTACAAAATAGGG+TGG 0.562220 2_2:+3865729 Msa0231590:three_prime_UTR
TCAAGAATTACATCTTCTGC+TGG 0.562958 2_2:-3865363 None:intergenic
GCAGGTCGTATGGGATTGCA+AGG 0.563172 2_2:+3865181 Msa0231590:CDS
CAACAGCCGCGAATCGACTC+CGG 0.569194 2_2:+3861493 Msa0231590:CDS
CTGAAGATTGTCGGAAGGGG+GGG 0.569435 2_2:+3862900 Msa0231590:CDS
TGATGCTGCTGTCTGGGCAA+AGG 0.572016 2_2:+3865410 Msa0231590:CDS
ATTGCGATAGAATTCTTGCT+GGG 0.572047 2_2:+3865666 Msa0231590:three_prime_UTR
GTTCACGCAAATGGGGTGCA+TGG 0.574426 2_2:+3861223 Msa0231590:exon
TGCGATAGAATTCTTGCTGG+GGG 0.577417 2_2:+3865668 Msa0231590:three_prime_UTR
GCTGAAGATTGTCGGAAGGG+GGG 0.578978 2_2:+3862899 Msa0231590:CDS
ACAGCTTCTTTGGAGACCCA+GGG 0.582345 2_2:+3864104 Msa0231590:CDS
AAATCGTTTATGCATTGATG+GGG 0.582936 2_2:+3864325 Msa0231590:CDS
CTTCTCCGTTCACGCAAATG+GGG 0.585899 2_2:+3861216 Msa0231590:exon
GCCATAACTTTGTCATCCAT+AGG 0.587101 2_2:-3865819 None:intergenic
AACGGAAAGTGTGACGGTAA+CGG 0.587248 2_2:-3861295 None:intergenic
AATTGAATTGAGTGCGCGTG+GGG 0.592504 2_2:-3861352 None:intergenic
GAATTCTCGAACATCGCCAC+CGG 0.592760 2_2:-3861512 None:intergenic
TCACCTTAATTATCATTGGA+GGG 0.593314 2_2:+3865574 Msa0231590:three_prime_UTR
GAGAGTGAAAGATATTGAAG+CGG 0.595167 2_2:+3861625 Msa0231590:CDS
AGTTCAACGGTAATGTACAA+TGG 0.599667 2_2:+3861542 Msa0231590:CDS
CATTTGCGTGAACGGAGAAG+AGG 0.602328 2_2:-3861213 None:intergenic
TTCTCCGGTGACGACGGCGA+AGG 0.603111 2_2:-3861441 None:intergenic
ACCGTTTGTGCTGCAGATGT+CGG 0.603463 2_2:-3864368 None:intergenic
GAAGAGTTCTCCGGTGACGA+CGG 0.608010 2_2:-3861447 None:intergenic
GATATCCAAACTCAAAGAGT+CGG 0.608281 2_2:-3865386 None:intergenic
TTGGCTGAAGATTGTCGGAA+GGG 0.608456 2_2:+3862896 Msa0231590:CDS
TGATCCACCAACAAACCCCT+GGG 0.611703 2_2:-3864120 None:intergenic
AACGGAAACGGAAAGTGTGA+CGG 0.617926 2_2:-3861301 None:intergenic
CGGTAACGGTGAGCTTGAGA+AGG 0.618269 2_2:-3861281 None:intergenic
ATTGGCTGAAGATTGTCGGA+AGG 0.624133 2_2:+3862895 Msa0231590:CDS
ACGAGGGAAAGTCGTCATCG+TGG 0.633479 2_2:+3861110 Msa0231590:five_prime_UTR
AGAATTGAATTGAGTGCGCG+TGG 0.635696 2_2:-3861354 None:intergenic
AACCAATCAGAAAAGAAGAG+AGG 0.638336 2_2:+3861164 Msa0231590:five_prime_UTR
CCCTTAGAAGTTAGGAACTG+CGG 0.642484 2_2:-3865601 None:intergenic
CAGCCGCGAATCGACTCCGG+TGG 0.645005 2_2:+3861496 Msa0231590:CDS
GTGGAGTGTTGTTGAACGCG+TGG 0.645342 2_2:-3861380 None:intergenic
TGAAAGATATTGAAGCGGAA+CGG 0.645350 2_2:+3861630 Msa0231590:CDS
TTATGGATTGAAGATGCATG+AGG 0.646725 2_2:+3865508 Msa0231590:three_prime_UTR
AATCGTTTATGCATTGATGG+GGG 0.653176 2_2:+3864326 Msa0231590:CDS
TATGGATTGAAGATGCATGA+GGG 0.653328 2_2:+3865509 Msa0231590:three_prime_UTR
TTGCGATAGAATTCTTGCTG+GGG 0.660284 2_2:+3865667 Msa0231590:three_prime_UTR
GAGTGTTGTTGAACGCGTGG+TGG 0.667602 2_2:-3861377 None:intergenic
CAGCTTCTTTGGAGACCCAG+GGG 0.669446 2_2:+3864105 Msa0231590:CDS
CCTTAATTATCATTGGAGGG+AGG 0.672110 2_2:+3865577 Msa0231590:three_prime_UTR
GAATTCGAATCCGAGTTCAA+CGG 0.674301 2_2:+3861529 Msa0231590:CDS
GTTTGTGCTGCAGATGTCGG+TGG 0.676596 2_2:-3864365 None:intergenic
AAATTCAGGGATACCTGACG+GGG 0.677043 2_2:-3865247 None:intergenic
TGCGCGTGGGGAGAAGAGTG+AGG 0.677813 2_2:-3861340 None:intergenic
GCGATAGAATTCTTGCTGGG+GGG 0.689470 2_2:+3865669 Msa0231590:three_prime_UTR
GCAGCAGAGAAACTAAAACC+AGG 0.702246 2_2:-3861674 None:intergenic
GAATTGAATTGAGTGCGCGT+GGG 0.703219 2_2:-3861353 None:intergenic
AGAAGAACCAGCTAATGGCG+TGG 0.703301 2_2:-3862801 None:intergenic
CAGGTCGTATGGGATTGCAA+GGG 0.713449 2_2:+3865182 Msa0231590:CDS
AATTCAGGGATACCTGACGG+GGG 0.769255 2_2:-3865246 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGTTATGAATTAAAAAA+AGG - chr2_2:3861773-3861792 None:intergenic 10.0%
!!! TTTTTAATTCATAACTATTA+AGG + chr2_2:3861774-3861793 Msa0231590:intron 10.0%
!! AATTAAACAAAAAGAAAATA+AGG + chr2_2:3863981-3864000 Msa0231590:intron 10.0%
!! AATAAGTTATTTATTCAAAC+AGG + chr2_2:3862113-3862132 Msa0231590:intron 15.0%
!! ATAAGTTATTTATTCAAACA+GGG + chr2_2:3862114-3862133 Msa0231590:intron 15.0%
!!! TTTAAAAGATATAACTGTTT+TGG + chr2_2:3863432-3863451 Msa0231590:intron 15.0%
!!! TTAAAAGATATAACTGTTTT+GGG + chr2_2:3863433-3863452 Msa0231590:intron 15.0%
!! GAGATATATATAATTTCATT+TGG + chr2_2:3863673-3863692 Msa0231590:intron 15.0%
!! AATTACACTTATAAATTACA+TGG + chr2_2:3863946-3863965 Msa0231590:intron 15.0%
!!! ATTTTTATTTAGTTACTTGT+TGG + chr2_2:3864391-3864410 Msa0231590:intron 15.0%
!!! ATGCCTTATAATTTTTTTTT+TGG + chr2_2:3864462-3864481 Msa0231590:intron 15.0%
!! AGTCCAAAAAAAAAATTATA+AGG - chr2_2:3864468-3864487 None:intergenic 15.0%
!! AGATTATCTAAATATTGTAT+GGG - chr2_2:3864719-3864738 None:intergenic 15.0%
!! TAGATTATCTAAATATTGTA+TGG - chr2_2:3864720-3864739 None:intergenic 15.0%
!!! CAATGTTTTAAATACTATAA+AGG - chr2_2:3864848-3864867 None:intergenic 15.0%
!! AAGTATTAAAGATAAATTGA+TGG + chr2_2:3864900-3864919 Msa0231590:intron 15.0%
!! TATTCAAAATGGTTACATTA+AGG + chr2_2:3861739-3861758 Msa0231590:CDS 20.0%
!! AGTTATGAATTAAAAAAAGG+AGG - chr2_2:3861770-3861789 None:intergenic 20.0%
!! TAAGTTATTTATTCAAACAG+GGG + chr2_2:3862115-3862134 Msa0231590:intron 20.0%
!! TATCTTTGTATGTTTATCTA+GGG + chr2_2:3862413-3862432 Msa0231590:intron 20.0%
!! CAATAACAAAAACATTCAAT+TGG - chr2_2:3862442-3862461 None:intergenic 20.0%
!!! TTTTGTTATTGAAATAGAAC+TGG + chr2_2:3862451-3862470 Msa0231590:intron 20.0%
!! TATCATTGTATGTTTATCTA+GGG + chr2_2:3862492-3862511 Msa0231590:intron 20.0%
!!! AGTTATGTAATCTACTATTT+TGG + chr2_2:3862700-3862719 Msa0231590:intron 20.0%
!!! TTTGATAGCTACTAAAATAT+TGG + chr2_2:3862877-3862896 Msa0231590:CDS 20.0%
!!! ACTTGAAGTTTAACTTTTAT+TGG + chr2_2:3863085-3863104 Msa0231590:intron 20.0%
!!! CTTGAAGTTTAACTTTTATT+GGG + chr2_2:3863086-3863105 Msa0231590:intron 20.0%
!!! TTGAAGTTTAACTTTTATTG+GGG + chr2_2:3863087-3863106 Msa0231590:intron 20.0%
!!! AAAAATAGCTAAGCTTTTTT+GGG - chr2_2:3863145-3863164 None:intergenic 20.0%
!!! AAAAAATAGCTAAGCTTTTT+TGG - chr2_2:3863146-3863165 None:intergenic 20.0%
!! ATAGAATCCAAAAAAAAAAG+TGG - chr2_2:3863325-3863344 None:intergenic 20.0%
!!! CTTTTTTTTTTGGATTCTAT+TGG + chr2_2:3863325-3863344 Msa0231590:intron 20.0%
!! TACTTAATAACTTTCAAGAT+AGG - chr2_2:3863368-3863387 None:intergenic 20.0%
!! AGTTATTAAGTATCAGTTAT+TGG + chr2_2:3863376-3863395 Msa0231590:intron 20.0%
!!! ATATCTTTTAAAAATGCTAG+AGG - chr2_2:3863424-3863443 None:intergenic 20.0%
!!! TAAAAGATATAACTGTTTTG+GGG + chr2_2:3863434-3863453 Msa0231590:intron 20.0%
!! GAAATTATATATATCTCGTA+AGG - chr2_2:3863670-3863689 None:intergenic 20.0%
!!! AGTTATTTTCATTATAGAAC+TGG + chr2_2:3863818-3863837 Msa0231590:intron 20.0%
!! CACAAAATAATCAATCAATT+GGG - chr2_2:3864428-3864447 None:intergenic 20.0%
!! TCACAAAATAATCAATCAAT+TGG - chr2_2:3864429-3864448 None:intergenic 20.0%
!! AATGCATAGAACTAAATTAA+TGG - chr2_2:3864514-3864533 None:intergenic 20.0%
!! TATTACTCTTCATCAATAAT+TGG - chr2_2:3864743-3864762 None:intergenic 20.0%
!! ATGAAGAGTAATAAACTTTA+GGG + chr2_2:3864750-3864769 Msa0231590:intron 20.0%
!!! TCATTTTCAAAATGAACTTT+TGG + chr2_2:3864816-3864835 Msa0231590:intron 20.0%
!! AAAATAATTCTAACTTTCTC+AGG + chr2_2:3864928-3864947 Msa0231590:intron 20.0%
!! TTAATATTTACAAAATAGGG+TGG + chr2_2:3865729-3865748 Msa0231590:three_prime_UTR 20.0%
!! GCTCATTTTCTTATTCAAAA+TGG + chr2_2:3861728-3861747 Msa0231590:CDS 25.0%
!! ATAACTATTAAGGACTTGTT+TGG + chr2_2:3861784-3861803 Msa0231590:intron 25.0%
! TCACTTTCATAAATTACTAC+TGG - chr2_2:3861944-3861963 None:intergenic 25.0%
! AGCTTATGAAAATAGCTTAT+AGG + chr2_2:3862243-3862262 Msa0231590:intron 25.0%
!! ATTGAGGTTTTTATCAAAAC+AGG + chr2_2:3862361-3862380 Msa0231590:intron 25.0%
! GTATCTTTGTATGTTTATCT+AGG + chr2_2:3862412-3862431 Msa0231590:intron 25.0%
! GTATCATTGTATGTTTATCT+AGG + chr2_2:3862491-3862510 Msa0231590:intron 25.0%
!!! CATGTAATTAGTTTTGACAT+TGG + chr2_2:3862531-3862550 Msa0231590:intron 25.0%
! AGTATACCAACAAGAAAATA+CGG - chr2_2:3862666-3862685 None:intergenic 25.0%
!! AATAAGATCCTTGTGAATTT+TGG + chr2_2:3863207-3863226 Msa0231590:intron 25.0%
!! ATAAGATCCTTGTGAATTTT+GGG + chr2_2:3863208-3863227 Msa0231590:intron 25.0%
!!! AACTGTTTTTGAAACCAAAT+AGG + chr2_2:3863492-3863511 Msa0231590:intron 25.0%
! ACGTTCATATAAGATCTAAT+GGG + chr2_2:3863761-3863780 Msa0231590:CDS 25.0%
! CTTGATGAGAAAAAACATAT+TGG + chr2_2:3863908-3863927 Msa0231590:intron 25.0%
! TTGTTAGTATAGTATTACCT+CGG + chr2_2:3864205-3864224 Msa0231590:intron 25.0%
! TATGCATTTATCATTTGAGA+TGG + chr2_2:3864526-3864545 Msa0231590:intron 25.0%
! AATTCTTTCATTGGAATACT+TGG + chr2_2:3864549-3864568 Msa0231590:intron 25.0%
! GATGAAGAGTAATAAACTTT+AGG + chr2_2:3864749-3864768 Msa0231590:intron 25.0%
! AAAGCGATAAATGTTTATCA+AGG - chr2_2:3865136-3865155 None:intergenic 25.0%
! ATAAACATTTATCGCTTTAC+AGG + chr2_2:3865138-3865157 Msa0231590:intron 25.0%
! ATGCTAACTCATAAAATTCA+GGG - chr2_2:3865263-3865282 None:intergenic 25.0%
! TATGCTAACTCATAAAATTC+AGG - chr2_2:3865264-3865283 None:intergenic 25.0%
!! AATCATTTCAGCTTTTGAAT+TGG + chr2_2:3865331-3865350 Msa0231590:intron 25.0%
!! ATCATTTCAGCTTTTGAATT+GGG + chr2_2:3865332-3865351 Msa0231590:intron 25.0%
!!! TGAAATCTCAGATTTTTTTG+TGG + chr2_2:3865762-3865781 Msa0231590:three_prime_UTR 25.0%
!!! AATTTGTTTCTGAATATCAC+AGG - chr2_2:3865870-3865889 None:intergenic 25.0%
!! TTGCTTCTTGATTTTGTATT+TGG + chr2_2:3865899-3865918 Msa0231590:three_prime_UTR 25.0%
!! TGCTTCTTGATTTTGTATTT+GGG + chr2_2:3865900-3865919 Msa0231590:three_prime_UTR 25.0%
!! AGACATTTGGAATAGTTATT+TGG + chr2_2:3865941-3865960 Msa0231590:three_prime_UTR 25.0%
! AAAACACTTGTCTAATCATT+TGG + chr2_2:3865980-3865999 Msa0231590:three_prime_UTR 25.0%
! GAACTTACAAAAGTAGATTA+TGG + chr2_2:3866005-3866024 Msa0231590:three_prime_UTR 25.0%
! TATTAAGGACTTGTTTGGAT+TGG + chr2_2:3861789-3861808 Msa0231590:intron 30.0%
TGTCTGTATCATTGTTTCAT+AGG - chr2_2:3861898-3861917 None:intergenic 30.0%
CAATCAATCGCTTATAACAT+GGG - chr2_2:3862345-3862364 None:intergenic 30.0%
TCAATCAATCGCTTATAACA+TGG - chr2_2:3862346-3862365 None:intergenic 30.0%
ATGTTATAAGCGATTGATTG+AGG + chr2_2:3862345-3862364 Msa0231590:intron 30.0%
TGATATGAGAGAATAGGTTA+TGG - chr2_2:3862387-3862406 None:intergenic 30.0%
CAAACATGATATGAGAGAAT+AGG - chr2_2:3862393-3862412 None:intergenic 30.0%
TAGAACTGGAATTGTTGATA+AGG + chr2_2:3862465-3862484 Msa0231590:intron 30.0%
!!! TAGTTTTGACATTGGTTATC+TGG + chr2_2:3862539-3862558 Msa0231590:intron 30.0%
ACTGTGTATCTTGTTCATTT+CGG + chr2_2:3862571-3862590 Msa0231590:intron 30.0%
TTTCAATATGAGTCATCTTG+AGG + chr2_2:3862743-3862762 Msa0231590:intron 30.0%
! AAATATTGGCTGAAGATTGT+CGG + chr2_2:3862891-3862910 Msa0231590:CDS 30.0%
! AAACTTCAAGTTTCAACACA+TGG - chr2_2:3863076-3863095 None:intergenic 30.0%
!!! CTATCCATCAAGACTTTTTT+GGG - chr2_2:3863235-3863254 None:intergenic 30.0%
AAAAAGTGGCATTGCTTAAA+AGG - chr2_2:3863311-3863330 None:intergenic 30.0%
!!! AGCAATGCCACTTTTTTTTT+TGG + chr2_2:3863315-3863334 Msa0231590:intron 30.0%
GATTCTATTGGAATTCAGAA+TGG + chr2_2:3863337-3863356 Msa0231590:intron 30.0%
AAGTATCAGTTATTGGTGAA+TGG + chr2_2:3863383-3863402 Msa0231590:intron 30.0%
ACATCATATAAGCTCCTATT+TGG - chr2_2:3863509-3863528 None:intergenic 30.0%
AACTAAGTTATTATCGACAG+TGG + chr2_2:3863549-3863568 Msa0231590:intron 30.0%
AATGTTCTAATCTCATAGTG+CGG + chr2_2:3863640-3863659 Msa0231590:intron 30.0%
! TATAATTGTTTTCTCTCGAC+AGG + chr2_2:3863699-3863718 Msa0231590:intron 30.0%
GACGTTCATATAAGATCTAA+TGG + chr2_2:3863760-3863779 Msa0231590:CDS 30.0%
TTCACCTCATTATTTATGAC+TGG + chr2_2:3863873-3863892 Msa0231590:intron 30.0%
TCTTCCAGTCATAAATAATG+AGG - chr2_2:3863880-3863899 None:intergenic 30.0%
TTTACTTCTTCCTTTATTCC+AGG + chr2_2:3864177-3864196 Msa0231590:CDS 30.0%
TTACTTCTTCCTTTATTCCA+GGG + chr2_2:3864178-3864197 Msa0231590:CDS 30.0%
! GAAATCGTTTATGCATTGAT+GGG + chr2_2:3864324-3864343 Msa0231590:CDS 30.0%
! AAATCGTTTATGCATTGATG+GGG + chr2_2:3864325-3864344 Msa0231590:CDS 30.0%
TTGAGATGGAATTCTTTCAT+TGG + chr2_2:3864540-3864559 Msa0231590:intron 30.0%
TAAGTTCTTGAACGTGAATA+GGG - chr2_2:3864583-3864602 None:intergenic 30.0%
TTAAGTTCTTGAACGTGAAT+AGG - chr2_2:3864584-3864603 None:intergenic 30.0%
GTTCAAGAACTTAATCATTC+TGG + chr2_2:3864590-3864609 Msa0231590:intron 30.0%
GTGTTATACAAAGATTGAGA+TGG + chr2_2:3864676-3864695 Msa0231590:intron 30.0%
! AAGAGTAATAAACTTTAGGG+TGG + chr2_2:3864753-3864772 Msa0231590:intron 30.0%
GATTCTATTCAACAGCTAAT+TGG + chr2_2:3864877-3864896 Msa0231590:intron 30.0%
AAATATTCATGCACTGTGAT+CGG + chr2_2:3865045-3865064 Msa0231590:intron 30.0%
!!! CTTGAACTAGTTTTTCAACT+GGG - chr2_2:3865440-3865459 None:intergenic 30.0%
!!! TCTTGAACTAGTTTTTCAAC+TGG - chr2_2:3865441-3865460 None:intergenic 30.0%
CATTGTACAATAGCACATTA+TGG + chr2_2:3865491-3865510 Msa0231590:exon 30.0%
CAATTATGCTACCCTTTAAA+AGG + chr2_2:3865548-3865567 Msa0231590:three_prime_UTR 30.0%
! TAAGGTGATGTCCTTTTAAA+GGG - chr2_2:3865562-3865581 None:intergenic 30.0%
! TTAAGGTGATGTCCTTTTAA+AGG - chr2_2:3865563-3865582 None:intergenic 30.0%
GACATCACCTTAATTATCAT+TGG + chr2_2:3865570-3865589 Msa0231590:three_prime_UTR 30.0%
ATCACCTTAATTATCATTGG+AGG + chr2_2:3865573-3865592 Msa0231590:three_prime_UTR 30.0%
TCACCTTAATTATCATTGGA+GGG + chr2_2:3865574-3865593 Msa0231590:three_prime_UTR 30.0%
! GTTTTATACCCTTAGAAGTT+AGG - chr2_2:3865612-3865631 None:intergenic 30.0%
! GCTTCTTGATTTTGTATTTG+GGG + chr2_2:3865901-3865920 Msa0231590:three_prime_UTR 30.0%
TTGGGGAAAATTGTAAACTA+AGG + chr2_2:3865918-3865937 Msa0231590:three_prime_UTR 30.0%
TTGTAAACTAAGGAGACATT+TGG + chr2_2:3865928-3865947 Msa0231590:three_prime_UTR 30.0%
AACCAATCAGAAAAGAAGAG+AGG + chr2_2:3861164-3861183 Msa0231590:five_prime_UTR 35.0%
! AACCTCTCTTCTTTTCTGAT+TGG - chr2_2:3861169-3861188 None:intergenic 35.0%
TATACCTAAGAAGAGTTCTC+CGG - chr2_2:3861459-3861478 None:intergenic 35.0%
TTGTACATTACCGTTGAACT+CGG - chr2_2:3861542-3861561 None:intergenic 35.0%
AGTTCAACGGTAATGTACAA+TGG + chr2_2:3861542-3861561 Msa0231590:CDS 35.0%
GTTCAACGGTAATGTACAAT+GGG + chr2_2:3861543-3861562 Msa0231590:CDS 35.0%
TACAATGGGAAAGAGAGAAT+TGG + chr2_2:3861557-3861576 Msa0231590:CDS 35.0%
AGATTCAACCTGATGTGATT+TGG + chr2_2:3861597-3861616 Msa0231590:CDS 35.0%
GATTCAACCTGATGTGATTT+GGG + chr2_2:3861598-3861617 Msa0231590:CDS 35.0%
GAGAGTGAAAGATATTGAAG+CGG + chr2_2:3861625-3861644 Msa0231590:CDS 35.0%
TGAAAGATATTGAAGCGGAA+CGG + chr2_2:3861630-3861649 Msa0231590:CDS 35.0%
AGAAAAGTTGTAACTACTCC+TGG + chr2_2:3861656-3861675 Msa0231590:CDS 35.0%
CTTCTCTTTCCTTATCATCT+TGG + chr2_2:3861701-3861720 Msa0231590:CDS 35.0%
! ATGCTTATCTAGAGTCTGTT+TGG + chr2_2:3861830-3861849 Msa0231590:intron 35.0%
GTTTATCTAGGGATTCCAAT+CGG + chr2_2:3862424-3862443 Msa0231590:intron 35.0%
TTTATCTAGGGATTCCAATC+GGG + chr2_2:3862504-3862523 Msa0231590:intron 35.0%
CTGTGTATCTTGTTCATTTC+GGG + chr2_2:3862572-3862591 Msa0231590:intron 35.0%
! TCATTCACAGTATAGCTTGT+AGG + chr2_2:3862629-3862648 Msa0231590:intron 35.0%
! TTGACTCCGTATTTTCTTGT+TGG + chr2_2:3862657-3862676 Msa0231590:intron 35.0%
!!! TAGTTTTGTGATGCATTTCC+AGG + chr2_2:3862775-3862794 Msa0231590:intron 35.0%
ACTTCAAGCTCAAAGGATAA+GGG - chr2_2:3863029-3863048 None:intergenic 35.0%
AGTTTCAACACATGGTAAAC+TGG - chr2_2:3863068-3863087 None:intergenic 35.0%
! ACTTTTATTGGGGCAAACAT+AGG + chr2_2:3863097-3863116 Msa0231590:intron 35.0%
GCAAACATAGGTCAATTTCT+AGG + chr2_2:3863109-3863128 Msa0231590:intron 35.0%
TTATTTCAGTTCTGTCTCCA+AGG - chr2_2:3863192-3863211 None:intergenic 35.0%
!!! CCTATCCATCAAGACTTTTT+TGG - chr2_2:3863236-3863255 None:intergenic 35.0%
! CCAAAAAAGTCTTGATGGAT+AGG + chr2_2:3863233-3863252 Msa0231590:intron 35.0%
! AAGTCTTGATGGATAGGATT+TGG + chr2_2:3863239-3863258 Msa0231590:intron 35.0%
TGCTTAAAAGGAGAAAAGAG+TGG - chr2_2:3863299-3863318 None:intergenic 35.0%
TAGCTGTGATAATATGCATG+TGG + chr2_2:3863589-3863608 Msa0231590:intron 35.0%
GATCTTATATGAACGTCATC+TGG - chr2_2:3863757-3863776 None:intergenic 35.0%
GTAGAAAGAAAGACTTGAAC+TGG + chr2_2:3863844-3863863 Msa0231590:intron 35.0%
CAGGACTTGAAAAACTTCTT+CGG - chr2_2:3864045-3864064 None:intergenic 35.0%
! CAGAAGTACATATTACGACA+CGG - chr2_2:3864068-3864087 None:intergenic 35.0%
AACAAATCACCCTGGAATAA+AGG - chr2_2:3864190-3864209 None:intergenic 35.0%
ACTATACTAACAAATCACCC+TGG - chr2_2:3864198-3864217 None:intergenic 35.0%
TAAAACATCACATGAAACCG+AGG - chr2_2:3864225-3864244 None:intergenic 35.0%
CGAAATCGTTTATGCATTGA+TGG + chr2_2:3864323-3864342 Msa0231590:CDS 35.0%
! AATCGTTTATGCATTGATGG+GGG + chr2_2:3864326-3864345 Msa0231590:CDS 35.0%
CATTGGAATACTTGGTATCT+AGG + chr2_2:3864557-3864576 Msa0231590:intron 35.0%
GTAAATGATGATTGCATGCT+TGG + chr2_2:3864620-3864639 Msa0231590:intron 35.0%
!!! AGGGTGGAAAATGCTTTTTT+AGG + chr2_2:3864769-3864788 Msa0231590:intron 35.0%
TAAAATTCAGGGATACCTGA+CGG - chr2_2:3865252-3865271 None:intergenic 35.0%
! TAGACGACTGATGAGTATTT+TGG + chr2_2:3865304-3865323 Msa0231590:intron 35.0%
TCAAGAATTACATCTTCTGC+TGG - chr2_2:3865366-3865385 None:intergenic 35.0%
GATATCCAAACTCAAAGAGT+CGG - chr2_2:3865389-3865408 None:intergenic 35.0%
! TTATGGATTGAAGATGCATG+AGG + chr2_2:3865508-3865527 Msa0231590:three_prime_UTR 35.0%
! TATGGATTGAAGATGCATGA+GGG + chr2_2:3865509-3865528 Msa0231590:three_prime_UTR 35.0%
TATTGCGATAGAATTCTTGC+TGG + chr2_2:3865665-3865684 Msa0231590:three_prime_UTR 35.0%
ATTGCGATAGAATTCTTGCT+GGG + chr2_2:3865666-3865685 Msa0231590:three_prime_UTR 35.0%
ATTTATAGCCAGTTTCCCTA+TGG + chr2_2:3865803-3865822 Msa0231590:three_prime_UTR 35.0%
CCATAACTTTGTCATCCATA+GGG - chr2_2:3865821-3865840 None:intergenic 35.0%
TTGAGAAGGTGAGATGAAGA+AGG - chr2_2:3861270-3861289 None:intergenic 40.0%
! AAGGATTTCTTTTCTTCCGG+CGG - chr2_2:3861425-3861444 None:intergenic 40.0%
! GCGAAGGATTTCTTTTCTTC+CGG - chr2_2:3861428-3861447 None:intergenic 40.0%
GAATTCGAATCCGAGTTCAA+CGG + chr2_2:3861529-3861548 Msa0231590:CDS 40.0%
!! AGAGAGAATTGGTGCTGTTA+TGG + chr2_2:3861568-3861587 Msa0231590:CDS 40.0%
TGAGCAACACCAAGATGATA+AGG - chr2_2:3861713-3861732 None:intergenic 40.0%
! ACACCTTCAGTTAGAAGTGT+CGG + chr2_2:3862005-3862024 Msa0231590:intron 40.0%
GAGCCTATGAAAACAACTCA+TGG + chr2_2:3862173-3862192 Msa0231590:intron 40.0%
!! ACGCCATGAGTTGTTTTCAT+AGG - chr2_2:3862179-3862198 None:intergenic 40.0%
TAATTACATGAGCACCCGAT+TGG - chr2_2:3862521-3862540 None:intergenic 40.0%
! ATTTCGGGTGCTCATGTAAT+CGG + chr2_2:3862587-3862606 Msa0231590:intron 40.0%
TACTTTCAGGCCAAGTATAG+AGG - chr2_2:3862949-3862968 None:intergenic 40.0%
TGTCAATGCTTGTTTGCTCA+TGG + chr2_2:3863002-3863021 Msa0231590:intron 40.0%
CACTTCAAGCTCAAAGGATA+AGG - chr2_2:3863030-3863049 None:intergenic 40.0%
TATCCTTTGAGCTTGAAGTG+TGG + chr2_2:3863030-3863049 Msa0231590:intron 40.0%
TAACCACACTTCAAGCTCAA+AGG - chr2_2:3863036-3863055 None:intergenic 40.0%
TTTGGGTCCCAAAATTCACA+AGG - chr2_2:3863218-3863237 None:intergenic 40.0%
! TCTTGATGGATAGGATTTGG+TGG + chr2_2:3863242-3863261 Msa0231590:intron 40.0%
! CTTGATGGATAGGATTTGGT+GGG + chr2_2:3863243-3863262 Msa0231590:intron 40.0%
GTACGAGTTCATGTGATAAG+TGG + chr2_2:3863265-3863284 Msa0231590:intron 40.0%
TTGCTGTAACACAGCTTCTT+TGG + chr2_2:3864094-3864113 Msa0231590:CDS 40.0%
! TGCATTGATGAGATCTTCCT+TGG - chr2_2:3864154-3864173 None:intergenic 40.0%
! AGATATCTGGAGGGAGTATA+AGG - chr2_2:3864278-3864297 None:intergenic 40.0%
! TTTGGTGCAAGATATCTGGA+GGG - chr2_2:3864287-3864306 None:intergenic 40.0%
AGTTACGTGGTTTCATGTTG+AGG + chr2_2:3864648-3864667 Msa0231590:intron 40.0%
GTTACGTGGTTTCATGTTGA+GGG + chr2_2:3864649-3864668 Msa0231590:intron 40.0%
AAAATTCAGGGATACCTGAC+GGG - chr2_2:3865251-3865270 None:intergenic 40.0%
ATATCTTGATGCTGCTGTCT+GGG + chr2_2:3865404-3865423 Msa0231590:CDS 40.0%
!! ACAATGCTATTTCCGAATGC+AGG - chr2_2:3865477-3865496 None:intergenic 40.0%
CCTCCCTCCAATGATAATTA+AGG - chr2_2:3865580-3865599 None:intergenic 40.0%
CCTTAATTATCATTGGAGGG+AGG + chr2_2:3865577-3865596 Msa0231590:three_prime_UTR 40.0%
TTGCGATAGAATTCTTGCTG+GGG + chr2_2:3865667-3865686 Msa0231590:three_prime_UTR 40.0%
TTTGTCATCCATAGGGAAAC+TGG - chr2_2:3865814-3865833 None:intergenic 40.0%
CCCTATGGATGACAAAGTTA+TGG + chr2_2:3865818-3865837 Msa0231590:three_prime_UTR 40.0%
GCCATAACTTTGTCATCCAT+AGG - chr2_2:3865822-3865841 None:intergenic 40.0%
! TGACGACTTTCCCTCGTTTT+TGG - chr2_2:3861107-3861126 None:intergenic 45.0%
TCTTCTCCGTTCACGCAAAT+GGG + chr2_2:3861215-3861234 Msa0231590:exon 45.0%
ATGAAGAAGGAGGAGATGGA+TGG - chr2_2:3861257-3861276 None:intergenic 45.0%
TGAGATGAAGAAGGAGGAGA+TGG - chr2_2:3861261-3861280 None:intergenic 45.0%
AGAAGGTGAGATGAAGAAGG+AGG - chr2_2:3861267-3861286 None:intergenic 45.0%
! AACGGAAAGTGTGACGGTAA+CGG - chr2_2:3861298-3861317 None:intergenic 45.0%
! AACGGAAACGGAAAGTGTGA+CGG - chr2_2:3861304-3861323 None:intergenic 45.0%
GGTTAACGTCGTTAGGGAAA+CGG - chr2_2:3861322-3861341 None:intergenic 45.0%
GAGTGAGGTTAACGTCGTTA+GGG - chr2_2:3861328-3861347 None:intergenic 45.0%
AGAGTGAGGTTAACGTCGTT+AGG - chr2_2:3861329-3861348 None:intergenic 45.0%
AATTGAATTGAGTGCGCGTG+GGG - chr2_2:3861355-3861374 None:intergenic 45.0%
GAATTGAATTGAGTGCGCGT+GGG - chr2_2:3861356-3861375 None:intergenic 45.0%
AGAATTGAATTGAGTGCGCG+TGG - chr2_2:3861357-3861376 None:intergenic 45.0%
GCAGCAGAGAAACTAAAACC+AGG - chr2_2:3861677-3861696 None:intergenic 45.0%
!!! GGTTTTAGTTTCTCTGCTGC+TGG + chr2_2:3861677-3861696 Msa0231590:CDS 45.0%
! CTTCTAACTGAAGGTGTGTC+TGG - chr2_2:3862002-3862021 None:intergenic 45.0%
AAACCGCTTGTGAAGCAGTT+TGG + chr2_2:3862148-3862167 Msa0231590:intron 45.0%
AACCGCTTGTGAAGCAGTTT+GGG + chr2_2:3862149-3862168 Msa0231590:intron 45.0%
! TTTCGGGTGCTCATGTAATC+GGG + chr2_2:3862588-3862607 Msa0231590:intron 45.0%
ATTGGCTGAAGATTGTCGGA+AGG + chr2_2:3862895-3862914 Msa0231590:CDS 45.0%
TTGGCTGAAGATTGTCGGAA+GGG + chr2_2:3862896-3862915 Msa0231590:CDS 45.0%
! CAACTACGCGAAGTACTTTC+AGG - chr2_2:3862962-3862981 None:intergenic 45.0%
!! CTGAAAGTACTTCGCGTAGT+TGG + chr2_2:3862960-3862979 Msa0231590:intron 45.0%
TACATTGCTGACGAGAACCT+TGG + chr2_2:3863172-3863191 Msa0231590:intron 45.0%
GGGACCCAAAAAAGTCTTGA+TGG + chr2_2:3863228-3863247 Msa0231590:intron 45.0%
GGAGCTTATATGATGTGCAG+AGG + chr2_2:3863513-3863532 Msa0231590:intron 45.0%
AGATCTAATGGGAGAGTTCG+AGG + chr2_2:3863772-3863791 Msa0231590:CDS 45.0%
AGTACATATTACGACACGGC+AGG - chr2_2:3864064-3864083 None:intergenic 45.0%
GGTGGATCAGTTTGATTCCA+AGG + chr2_2:3864134-3864153 Msa0231590:CDS 45.0%
! CTTTGGTGCAAGATATCTGG+AGG - chr2_2:3864288-3864307 None:intergenic 45.0%
!! TGGCTTTGGTGCAAGATATC+TGG - chr2_2:3864291-3864310 None:intergenic 45.0%
CGATTTCGAAACATCGTAGC+TGG - chr2_2:3864311-3864330 None:intergenic 45.0%
ATGCTTGGTCACTAGTTACG+TGG + chr2_2:3864635-3864654 Msa0231590:intron 45.0%
GTATGGGATTGCAAGGGATA+GGG + chr2_2:3865188-3865207 Msa0231590:CDS 45.0%
AAATTCAGGGATACCTGACG+GGG - chr2_2:3865250-3865269 None:intergenic 45.0%
! CTTGACCGACTCTTTGAGTT+TGG + chr2_2:3865381-3865400 Msa0231590:CDS 45.0%
GATATCTTGATGCTGCTGTC+TGG + chr2_2:3865403-3865422 Msa0231590:CDS 45.0%
GATACTACTGCTCCTGCATT+CGG + chr2_2:3865462-3865481 Msa0231590:CDS 45.0%
TCCGCAGTTCCTAACTTCTA+AGG + chr2_2:3865600-3865619 Msa0231590:three_prime_UTR 45.0%
CCCTTAGAAGTTAGGAACTG+CGG - chr2_2:3865604-3865623 None:intergenic 45.0%
CCGCAGTTCCTAACTTCTAA+GGG + chr2_2:3865601-3865620 Msa0231590:three_prime_UTR 45.0%
TGCGATAGAATTCTTGCTGG+GGG + chr2_2:3865668-3865687 Msa0231590:three_prime_UTR 45.0%
!! TTATTTAATATTTACAAAAT+AGG + chr2_2:3865725-3865744 Msa0231590:three_prime_UTR 5.0%
!! TATTTAATATTTACAAAATA+GGG + chr2_2:3865726-3865745 Msa0231590:three_prime_UTR 5.0%
CATTTGCGTGAACGGAGAAG+AGG - chr2_2:3861216-3861235 None:intergenic 50.0%
CTCTTCTCCGTTCACGCAAA+TGG + chr2_2:3861214-3861233 Msa0231590:exon 50.0%
CTTCTCCGTTCACGCAAATG+GGG + chr2_2:3861216-3861235 Msa0231590:exon 50.0%
ATGCACCCCATTTGCGTGAA+CGG - chr2_2:3861224-3861243 None:intergenic 50.0%
AAGGAGGAGATGGATGGAGT+TGG - chr2_2:3861251-3861270 None:intergenic 50.0%
CGTCGTTAGGGAAACGGAAA+CGG - chr2_2:3861316-3861335 None:intergenic 50.0%
! GATTTCTTTTCTTCCGGCGG+AGG - chr2_2:3861422-3861441 None:intergenic 50.0%
GTCACCGGAGAACTCTTCTT+AGG + chr2_2:3861452-3861471 Msa0231590:CDS 50.0%
GAATTCTCGAACATCGCCAC+CGG - chr2_2:3861515-3861534 None:intergenic 50.0%
CTCTGCTCCCAAATCACATC+AGG - chr2_2:3861608-3861627 None:intergenic 50.0%
! GCACCGACACTTCTAACTGA+AGG - chr2_2:3862011-3862030 None:intergenic 50.0%
CTCCCAAACTGCTTCACAAG+CGG - chr2_2:3862154-3862173 None:intergenic 50.0%
AGAAGAACCAGCTAATGGCG+TGG - chr2_2:3862804-3862823 None:intergenic 50.0%
CCAGCAGAAGAACCAGCTAA+TGG - chr2_2:3862809-3862828 None:intergenic 50.0%
! CCATTAGCTGGTTCTTCTGC+TGG + chr2_2:3862806-3862825 Msa0231590:CDS 50.0%
GTCTGTGCTGTAGTTGCTTC+TGG + chr2_2:3862836-3862855 Msa0231590:CDS 50.0%
!! AGTTGCTTCTGGAGCTAGCA+TGG + chr2_2:3862847-3862866 Msa0231590:CDS 50.0%
TGGCTGAAGATTGTCGGAAG+GGG + chr2_2:3862897-3862916 Msa0231590:CDS 50.0%
! TGGGGGTATGCCTCTATACT+TGG + chr2_2:3862936-3862955 Msa0231590:intron 50.0%
! ACAGCTTCTTTGGAGACCCA+GGG + chr2_2:3864104-3864123 Msa0231590:CDS 50.0%
TGATCCACCAACAAACCCCT+GGG - chr2_2:3864123-3864142 None:intergenic 50.0%
! CGAAACATCGTAGCTGGCTT+TGG - chr2_2:3864305-3864324 None:intergenic 50.0%
ACCGACATCTGCAGCACAAA+CGG + chr2_2:3864367-3864386 Msa0231590:CDS 50.0%
ACCGTTTGTGCTGCAGATGT+CGG - chr2_2:3864371-3864390 None:intergenic 50.0%
GTGGTTTCATGTTGAGGGCT+TGG + chr2_2:3864654-3864673 Msa0231590:intron 50.0%
! CGTGTTTGTGCTTTTCCAGC+AGG + chr2_2:3865163-3865182 Msa0231590:CDS 50.0%
! TGCTTTTCCAGCAGGTCGTA+TGG + chr2_2:3865171-3865190 Msa0231590:CDS 50.0%
! GCTTTTCCAGCAGGTCGTAT+GGG + chr2_2:3865172-3865191 Msa0231590:CDS 50.0%
CAGGTCGTATGGGATTGCAA+GGG + chr2_2:3865182-3865201 Msa0231590:CDS 50.0%
CGTATGGGATTGCAAGGGAT+AGG + chr2_2:3865187-3865206 Msa0231590:CDS 50.0%
GCGTTCTCGGGATTACAATC+TGG - chr2_2:3865220-3865239 None:intergenic 50.0%
AATTCAGGGATACCTGACGG+GGG - chr2_2:3865249-3865268 None:intergenic 50.0%
GCGATAGAATTCTTGCTGGG+GGG + chr2_2:3865669-3865688 Msa0231590:three_prime_UTR 50.0%
ACGAGGGAAAGTCGTCATCG+TGG + chr2_2:3861110-3861129 Msa0231590:five_prime_UTR 55.0%
GTTCACGCAAATGGGGTGCA+TGG + chr2_2:3861223-3861242 Msa0231590:exon 55.0%
! CGGTAACGGTGAGCTTGAGA+AGG - chr2_2:3861284-3861303 None:intergenic 55.0%
! GAGTGTTGTTGAACGCGTGG+TGG - chr2_2:3861380-3861399 None:intergenic 55.0%
!! GTGGAGTGTTGTTGAACGCG+TGG - chr2_2:3861383-3861402 None:intergenic 55.0%
AGGAGAGGGAGAAGGAGTTG+TGG - chr2_2:3861402-3861421 None:intergenic 55.0%
! TTTTCTTCCGGCGGAGGAGA+GGG - chr2_2:3861416-3861435 None:intergenic 55.0%
AAATCCTTCGCCGTCGTCAC+CGG + chr2_2:3861437-3861456 Msa0231590:CDS 55.0%
GAAGAGTTCTCCGGTGACGA+CGG - chr2_2:3861450-3861469 None:intergenic 55.0%
CAGCTAATGGCGTGGTTTCC+TGG - chr2_2:3862796-3862815 None:intergenic 55.0%
CAGGAAACCACGCCATTAGC+TGG + chr2_2:3862794-3862813 Msa0231590:intron 55.0%
GGCTGAAGATTGTCGGAAGG+GGG + chr2_2:3862898-3862917 Msa0231590:CDS 55.0%
GCTGAAGATTGTCGGAAGGG+GGG + chr2_2:3862899-3862918 Msa0231590:CDS 55.0%
CTGAAGATTGTCGGAAGGGG+GGG + chr2_2:3862900-3862919 Msa0231590:CDS 55.0%
! CACAGCTTCTTTGGAGACCC+AGG + chr2_2:3864103-3864122 Msa0231590:CDS 55.0%
! CAGCTTCTTTGGAGACCCAG+GGG + chr2_2:3864105-3864124 Msa0231590:CDS 55.0%
TTGGAGACCCAGGGGTTTGT+TGG + chr2_2:3864113-3864132 Msa0231590:CDS 55.0%
CTGATCCACCAACAAACCCC+TGG - chr2_2:3864124-3864143 None:intergenic 55.0%
GTTTGTGCTGCAGATGTCGG+TGG - chr2_2:3864368-3864387 None:intergenic 55.0%
TGCAATCCCATACGACCTGC+TGG - chr2_2:3865181-3865200 None:intergenic 55.0%
GCAGGTCGTATGGGATTGCA+AGG + chr2_2:3865181-3865200 Msa0231590:CDS 55.0%
TGATGCTGCTGTCTGGGCAA+AGG + chr2_2:3865410-3865429 Msa0231590:CDS 55.0%
ATTCTTGCTGGGGGGAGAAG+AGG + chr2_2:3865677-3865696 Msa0231590:three_prime_UTR 55.0%
TTCTTGCTGGGGGGAGAAGA+GGG + chr2_2:3865678-3865697 Msa0231590:three_prime_UTR 55.0%
! CTTTTCTTCCGGCGGAGGAG+AGG - chr2_2:3861417-3861436 None:intergenic 60.0%
! CAACAGCCGCGAATCGACTC+CGG + chr2_2:3861493-3861512 Msa0231590:CDS 60.0%
GGAAGGGGGGGACTGCATTT+CGG + chr2_2:3862912-3862931 Msa0231590:CDS 60.0%
!! GAGACCCAGGGGTTTGTTGG+TGG + chr2_2:3864116-3864135 Msa0231590:CDS 60.0%
ACGGGGGCTAGATGCGTTCT+CGG - chr2_2:3865233-3865252 None:intergenic 60.0%
TCTTGCTGGGGGGAGAAGAG+GGG + chr2_2:3865679-3865698 Msa0231590:three_prime_UTR 60.0%
TGCGCGTGGGGAGAAGAGTG+AGG - chr2_2:3861343-3861362 None:intergenic 65.0%
TCCTTCTCCCTCTCCTCCGC+CGG + chr2_2:3861406-3861425 Msa0231590:CDS 65.0%
TTCTCCGGTGACGACGGCGA+AGG - chr2_2:3861444-3861463 None:intergenic 65.0%
!! TCGCCACCGGAGTCGATTCG+CGG - chr2_2:3861502-3861521 None:intergenic 65.0%
GGGGGGACTGCATTTCGGCT+GGG + chr2_2:3862917-3862936 Msa0231590:CDS 65.0%
GGGGGACTGCATTTCGGCTG+GGG + chr2_2:3862918-3862937 Msa0231590:CDS 65.0%
GGGGACTGCATTTCGGCTGG+GGG + chr2_2:3862919-3862938 Msa0231590:CDS 65.0%
CGGGGGCTAGATGCGTTCTC+GGG - chr2_2:3865232-3865251 None:intergenic 65.0%
GAACGCATCTAGCCCCCGTC+AGG + chr2_2:3865234-3865253 Msa0231590:CDS 65.0%
TCCGGCGGAGGAGAGGGAGA+AGG - chr2_2:3861410-3861429 None:intergenic 70.0%
! CAGCCGCGAATCGACTCCGG+TGG + chr2_2:3861496-3861515 Msa0231590:CDS 70.0%
GGGGGGGACTGCATTTCGGC+TGG + chr2_2:3862916-3862935 Msa0231590:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 3861104 3866039 3861104 ID=Msa0231590;Name=Msa0231590
chr2_2 mRNA 3861104 3866039 3861104 ID=Msa0231590-mRNA-1;Parent=Msa0231590;Name=Msa0231590-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129|1|1|1|1|1|7|536|401
chr2_2 exon 3861104 3861760 3861104 ID=Msa0231590-mRNA-1:exon:1522;Parent=Msa0231590-mRNA-1
chr2_2 exon 3862797 3862940 3862797 ID=Msa0231590-mRNA-1:exon:1523;Parent=Msa0231590-mRNA-1
chr2_2 exon 3863721 3863793 3863721 ID=Msa0231590-mRNA-1:exon:1524;Parent=Msa0231590-mRNA-1
chr2_2 exon 3864094 3864199 3864094 ID=Msa0231590-mRNA-1:exon:1525;Parent=Msa0231590-mRNA-1
chr2_2 exon 3864292 3864388 3864292 ID=Msa0231590-mRNA-1:exon:1526;Parent=Msa0231590-mRNA-1
chr2_2 exon 3865160 3865255 3865160 ID=Msa0231590-mRNA-1:exon:1527;Parent=Msa0231590-mRNA-1
chr2_2 exon 3865342 3866039 3865342 ID=Msa0231590-mRNA-1:exon:1528;Parent=Msa0231590-mRNA-1
chr2_2 five_prime_UTR 3861104 3861232 3861104 ID=Msa0231590-mRNA-1:five_prime_utr;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3861233 3861760 3861233 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3862797 3862940 3862797 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3863721 3863793 3863721 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3864094 3864199 3864094 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3864292 3864388 3864292 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3865160 3865255 3865160 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 CDS 3865342 3865503 3865342 ID=Msa0231590-mRNA-1:cds;Parent=Msa0231590-mRNA-1
chr2_2 three_prime_UTR 3865504 3866039 3865504 ID=Msa0231590-mRNA-1:three_prime_utr;Parent=Msa0231590-mRNA-1
Gene Sequence

>Msa0231590

ATGGGGTGCATGGCTCCAACTCCATCCATCTCCTCCTTCTTCATCTCACCTTCTCAAGCTCACCGTTACCGTCACACTTTCCGTTTCCGTTTCCCTAACGACGTTAACCTCACTCTTCTCCCCACGCGCACTCAATTCAATTCTCCACCACGCGTTCAACAACACTCCACAACTCCTTCTCCCTCTCCTCCGCCGGAAGAAAAGAAATCCTTCGCCGTCGTCACCGGAGAACTCTTCTTAGGTATAGCTTCACGTCTCATCAACAGCCGCGAATCGACTCCGGTGGCGATGTTCGAGAATTCGAATCCGAGTTCAACGGTAATGTACAATGGGAAAGAGAGAATTGGTGCTGTTATGGAAGATGAGATTCAACCTGATGTGATTTGGGAGCAGAGAGTGAAAGATATTGAAGCGGAACGGAGTAGAAAAGTTGTAACTACTCCTGGTTTTAGTTTCTCTGCTGCTGGTCTTCTCTTTCCTTATCATCTTGGTGTTGCTCATTTTCTTATTCAAAATGGTTACATTAAGGAAACCACGCCATTAGCTGGTTCTTCTGCTGGAGCTATCGTCTGTGCTGTAGTTGCTTCTGGAGCTAGCATGGAAGAAGCTTTGATAGCTACTAAAATATTGGCTGAAGATTGTCGGAAGGGGGGGACTGCATTTCGGCTGGGGGCTGTTCTGCGTGATATTCTTCAGAAGTTTTTGCCAGATGACGTTCATATAAGATCTAATGGGAGAGTTCGAGTTGCTGTAACACAGCTTCTTTGGAGACCCAGGGGTTTGTTGGTGGATCAGTTTGATTCCAAGGAAGATCTCATCAATGCAGTTTTTACTTCTTCCTTTATTCCAGGATATCTTGCACCAAAGCCAGCTACGATGTTTCGAAATCGTTTATGCATTGATGGGGGTTTGACGTTGTTTATGCCACCGACATCTGCAGCACAAACGGTACGTGTTTGTGCTTTTCCAGCAGGTCGTATGGGATTGCAAGGGATAGGGATTAGTCCAGATTGTAATCCCGAGAACGCATCTAGCCCCCGTCAGCTTTTGAATTGGGCTCTTGAGCCAGCAGAAGATGTAATTCTTGACCGACTCTTTGAGTTTGGATATCTTGATGCTGCTGTCTGGGCAAAGGAAAACCCAGTTGAAAAACTAGTTCAAGATGATACTACTGCTCCTGCATTCGGAAATAGCATTGTACAATAG
Protein sequence

>Msa0231590

MGCMAPTPSISSFFISPSQAHRYRHTFRFRFPNDVNLTLLPTRTQFNSPPRVQQHSTTPSPSPPPEEKKSFAVVTGELFLGIASRLINSRESTPVAMFENSNPSSTVMYNGKERIGAVMEDEIQPDVIWEQRVKDIEAERSRKVVTTPGFSFSAAGLLFPYHLGVAHFLIQNGYIKETTPLAGSSAGAIVCAVVASGASMEEALIATKILAEDCRKGGTAFRLGAVLRDILQKFLPDDVHIRSNGRVRVAVTQLLWRPRGLLVDQFDSKEDLINAVFTSSFIPGYLAPKPATMFRNRLCIDGGLTLFMPPTSAAQTVRVCAFPAGRMGLQGIGISPDCNPENASSPRQLLNWALEPAEDVILDRLFEFGYLDAAVWAKENPVEKLVQDDTTAPAFGNSIVQ*