Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949380 | XP_013451880.1 | 88.693 | 283 | 30 | 1 | 1 | 283 | 1 | 281 | 2.18e-177 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949380 | sp|Q9SRE0|5FCLL_ARATH | 64.368 | 261 | 79 | 3 | 6 | 252 | 2 | 262 | 2.57e-111 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949380 | I3T039 | 88.693 | 283 | 30 | 1 | 1 | 283 | 1 | 281 | 1.04e-177 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030400 | Msa0949380 | 0.802268 | 6.081173e-49 | -8.615850e-47 |
| Msa0040410 | Msa0949380 | 0.800752 | 1.243421e-48 | -8.615850e-47 |
| Msa0059590 | Msa0949380 | 0.814869 | 1.236903e-51 | -8.615850e-47 |
| Msa0072710 | Msa0949380 | 0.803715 | 3.053972e-49 | -8.615850e-47 |
| Msa0607440 | Msa0949380 | 0.801646 | 8.162746e-49 | -8.615850e-47 |
| Msa0618260 | Msa0949380 | 0.817857 | 2.652994e-52 | -8.615850e-47 |
| Msa0635470 | Msa0949380 | 0.826652 | 2.411717e-54 | -8.615850e-47 |
| Msa0645780 | Msa0949380 | 0.823885 | 1.088619e-53 | -8.615850e-47 |
| Msa0657820 | Msa0949380 | 0.805216 | 1.485702e-49 | -8.615850e-47 |
| Msa0677840 | Msa0949380 | 0.852882 | 3.447405e-61 | -8.615850e-47 |
| Msa0688550 | Msa0949380 | 0.813665 | 2.281220e-51 | -8.615850e-47 |
| Msa0735700 | Msa0949380 | 0.806353 | 8.571446e-50 | -8.615850e-47 |
| Msa0770430 | Msa0949380 | 0.809475 | 1.857617e-50 | -8.615850e-47 |
| Msa0778580 | Msa0949380 | 0.835402 | 1.713260e-56 | -8.615850e-47 |
| Msa0815950 | Msa0949380 | 0.813594 | 2.365231e-51 | -8.615850e-47 |
| Msa0841980 | Msa0949380 | 0.806073 | 9.818835e-50 | -8.615850e-47 |
| Msa0153640 | Msa0949380 | 0.800954 | 1.130769e-48 | -8.615850e-47 |
| Msa0162070 | Msa0949380 | 0.804723 | 1.884116e-49 | -8.615850e-47 |
| Msa0164630 | Msa0949380 | 0.817571 | 3.077183e-52 | -8.615850e-47 |
| Msa0168900 | Msa0949380 | 0.805776 | 1.133732e-49 | -8.615850e-47 |
| Msa0173760 | Msa0949380 | 0.811441 | 6.990717e-51 | -8.615850e-47 |
| Msa0173850 | Msa0949380 | 0.801489 | 8.789408e-49 | -8.615850e-47 |
| Msa0189240 | Msa0949380 | 0.809434 | 1.895710e-50 | -8.615850e-47 |
| Msa0231580 | Msa0949380 | 0.833095 | 6.492711e-56 | -8.615850e-47 |
| Msa0231590 | Msa0949380 | 0.813849 | 2.078722e-51 | -8.615850e-47 |
| Msa0387790 | Msa0949380 | 0.816229 | 6.159056e-52 | -8.615850e-47 |
| Msa0423600 | Msa0949380 | 0.807865 | 4.101359e-50 | -8.615850e-47 |
| Msa0471890 | Msa0949380 | 0.822652 | 2.112248e-53 | -8.615850e-47 |
| Msa0476180 | Msa0949380 | 0.809878 | 1.521879e-50 | -8.615850e-47 |
| Msa0267120 | Msa0949380 | 0.836676 | 8.139896e-57 | -8.615850e-47 |
| Msa0292150 | Msa0949380 | 0.826140 | 3.194489e-54 | -8.615850e-47 |
| Msa0352510 | Msa0949380 | 0.823425 | 1.395017e-53 | -8.615850e-47 |
| Msa0512310 | Msa0949380 | 0.821065 | 4.921475e-53 | -8.615850e-47 |
| Msa0528740 | Msa0949380 | 0.801066 | 1.072966e-48 | -8.615850e-47 |
| Msa0589600 | Msa0949380 | 0.803671 | 3.119271e-49 | -8.615850e-47 |
| Msa0589640 | Msa0949380 | 0.802026 | 6.818583e-49 | -8.615850e-47 |
| Msa0949380 | Msa0975180 | 0.824032 | 1.005686e-53 | -8.615850e-47 |
| Msa0949380 | Msa1016110 | 0.814424 | 1.551815e-51 | -8.615850e-47 |
| Msa0949380 | Msa1029320 | 0.816940 | 4.266543e-52 | -8.615850e-47 |
| Msa0949380 | Msa1029430 | 0.801340 | 9.431990e-49 | -8.615850e-47 |
| Msa0949380 | Msa1081700 | 0.831553 | 1.563578e-55 | -8.615850e-47 |
| Msa0949380 | Msa1081850 | 0.805051 | 1.608774e-49 | -8.615850e-47 |
| Msa0949380 | Msa1184580 | 0.840518 | 8.287185e-58 | -8.615850e-47 |
| Msa0949380 | Msa1233770 | 0.810698 | 1.012930e-50 | -8.615850e-47 |
| Msa0949380 | Msa1238700 | 0.805533 | 1.275305e-49 | -8.615850e-47 |
| Msa0949380 | Msa1276080 | 0.813834 | 2.093747e-51 | -8.615850e-47 |
| Msa0949380 | Msa1359620 | 0.804043 | 2.610955e-49 | -8.615850e-47 |
| Msa0949380 | Msa1397110 | 0.817639 | 2.971529e-52 | -8.615850e-47 |
| Msa0949380 | Msa1403700 | 0.802926 | 4.449167e-49 | -8.615850e-47 |
| Msa0949380 | Msa1403900 | 0.800292 | 1.543216e-48 | -8.615850e-47 |
| Msa0949380 | Msa1408190 | 0.806100 | 9.692346e-50 | -8.615850e-47 |
| Msa0949380 | Msa1448990 | 0.804037 | 2.617678e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949380 | MtrunA17_Chr6g0464561 | 82.686 | 283 | 30 | 2 | 1 | 283 | 1 | 264 | 8.44e-165 | 460 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0949380 | AT1G76730.1 | 64.368 | 261 | 79 | 3 | 6 | 252 | 2 | 262 | 2.62e-112 | 328 |
Find 70 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGTAGATCTTATTGTTAT+TGG | 0.152589 | 6_3:-35456109 | Msa0949380:CDS |
| GTCAGATTTCTCACTCTTTC+AGG | 0.167766 | 6_3:-35457498 | Msa0949380:intron |
| TAATGCTTGTGTTTCCATTT+TGG | 0.190013 | 6_3:+35459787 | None:intergenic |
| TCCGTTGGTGTTGCGAAATA+TGG | 0.223288 | 6_3:-35456160 | Msa0949380:CDS |
| ATATGGTATGTTGCGTTATA+TGG | 0.257841 | 6_3:-35455298 | Msa0949380:CDS |
| GGGTGATTAGAAAGAGGATA+TGG | 0.270926 | 6_3:-35459535 | Msa0949380:CDS |
| AGAGAAGCACCAACAAAATT+AGG | 0.289230 | 6_3:+35459455 | None:intergenic |
| ACTTGTTTCTGAGGAGAATC+TGG | 0.290978 | 6_3:+35457519 | None:intergenic |
| ATCACCCATTTCCAAGCTTT+CGG | 0.323242 | 6_3:+35459551 | None:intergenic |
| AAAGAGGATATGGGATTTGA+TGG | 0.331100 | 6_3:-35459525 | Msa0949380:CDS |
| CACTTCCATTTCATTCAAAC+TGG | 0.336323 | 6_3:-35459705 | Msa0949380:CDS |
| GTTGTTACCTCAGGTAATTT+TGG | 0.339159 | 6_3:-35455252 | Msa0949380:CDS |
| CCTAATCGAGCACCTGTGTT+CGG | 0.356783 | 6_3:+35456070 | None:intergenic |
| GGATTTGCAGAACTTGAATA+TGG | 0.362270 | 6_3:-35455315 | Msa0949380:CDS |
| CCGAACACAGGTGCTCGATT+AGG | 0.365280 | 6_3:-35456070 | Msa0949380:CDS |
| TGCTTCTCTTGCTGCTGATA+AGG | 0.375669 | 6_3:-35459441 | Msa0949380:intron |
| CTTCAATGAGGCTGCTTTCG+AGG | 0.380498 | 6_3:-35459651 | Msa0949380:CDS |
| ATGATCCGAAAGCTTGGAAA+TGG | 0.388819 | 6_3:-35459556 | Msa0949380:CDS |
| CGAACACAGGTGCTCGATTA+GGG | 0.393323 | 6_3:-35456069 | Msa0949380:CDS |
| GGAAGTACATGCTTCTTTGA+TGG | 0.394036 | 6_3:+35456180 | None:intergenic |
| GCGAAATATGGACGACCAAT+TGG | 0.398720 | 6_3:-35456148 | Msa0949380:CDS |
| GGCTTCCAGTTTGAATGAAA+TGG | 0.406006 | 6_3:+35459700 | None:intergenic |
| CTAATCGAGCACCTGTGTTC+GGG | 0.407200 | 6_3:+35456071 | None:intergenic |
| ACATCTTTGAGAAGCCTTTG+AGG | 0.409891 | 6_3:+35455198 | None:intergenic |
| TTTGTTGTTGTTGCTGTTGG+TGG | 0.417134 | 6_3:+35459679 | None:intergenic |
| AGCTTTGTTGTTGTTGCTGT+TGG | 0.422102 | 6_3:+35459676 | None:intergenic |
| TTAGGAATCCTATGATGAAC+AGG | 0.427277 | 6_3:+35459473 | None:intergenic |
| CTCGAAAGCAGCCTCATTGA+AGG | 0.427405 | 6_3:+35459652 | None:intergenic |
| GTGGAGAGAGAGCGGTAAAG+AGG | 0.427620 | 6_3:+35459737 | None:intergenic |
| TAAAGAGGAGAGAGAGTGAA+TGG | 0.446819 | 6_3:+35459752 | None:intergenic |
| TGCAGGATGATCCGAAAGCT+TGG | 0.462695 | 6_3:-35459562 | Msa0949380:CDS |
| AAATATTTCTCTTATTTACA+AGG | 0.476317 | 6_3:-35455103 | Msa0949380:three_prime_UTR |
| ATCCTAGACCTGTTCATCAT+AGG | 0.476390 | 6_3:-35459481 | Msa0949380:CDS |
| AAATGGAAACACAAGCATTA+CGG | 0.488225 | 6_3:-35459784 | Msa0949380:CDS |
| CAGTTTGAATGAAATGGAAG+TGG | 0.489259 | 6_3:+35459706 | None:intergenic |
| CGAGTCAGATATGTTAACTT+CGG | 0.490665 | 6_3:-35456206 | Msa0949380:CDS |
| ATCCTATGATGAACAGGTCT+AGG | 0.500568 | 6_3:+35459479 | None:intergenic |
| TTTGAGAAGCCTTTGAGGAA+TGG | 0.502329 | 6_3:+35455203 | None:intergenic |
| GAGTCAGATATGTTAACTTC+GGG | 0.507316 | 6_3:-35456205 | Msa0949380:CDS |
| CGCAGAAGCACGTCGAGCAA+TGG | 0.511544 | 6_3:-35459609 | Msa0949380:CDS |
| CCTCAACCACGGCTGAGGAC+AGG | 0.514670 | 6_3:-35456244 | Msa0949380:CDS |
| AGGATATGGGATTTGATGGA+AGG | 0.523046 | 6_3:-35459521 | Msa0949380:CDS |
| CCTGTCCTCAGCCGTGGTTG+AGG | 0.530300 | 6_3:+35456244 | None:intergenic |
| TATGGTATGTTGCGTTATAT+GGG | 0.539407 | 6_3:-35455297 | Msa0949380:CDS |
| GGTGATTAGAAAGAGGATAT+GGG | 0.539605 | 6_3:-35459534 | Msa0949380:CDS |
| GGATATGGGATTTGATGGAA+GGG | 0.547035 | 6_3:-35459520 | Msa0949380:CDS |
| TCCATATTTCGCAACACCAA+CGG | 0.547570 | 6_3:+35456159 | None:intergenic |
| GGAGGAGAAATCTTCGATGC+AGG | 0.557726 | 6_3:-35459579 | Msa0949380:CDS |
| TCAACACTAGTTGTTACCTC+AGG | 0.563225 | 6_3:-35455261 | Msa0949380:CDS |
| TGATCCGAAAGCTTGGAAAT+GGG | 0.564177 | 6_3:-35459555 | Msa0949380:CDS |
| ACGTCGAGCAATGGCAGTTG+AGG | 0.564409 | 6_3:-35459600 | Msa0949380:CDS |
| GGAAATGGGTGATTAGAAAG+AGG | 0.564862 | 6_3:-35459541 | Msa0949380:CDS |
| TTTCCTTAGCCATTCCTCAA+AGG | 0.566354 | 6_3:-35455212 | Msa0949380:CDS |
| CACAGGTGCTCGATTAGGGA+AGG | 0.566988 | 6_3:-35456065 | Msa0949380:CDS |
| AGAAATCTGACTTGTTTCTG+AGG | 0.583571 | 6_3:+35457510 | None:intergenic |
| CATAAACAATGATTAAAGCA+TGG | 0.584601 | 6_3:+35455153 | None:intergenic |
| TAACTCCTCAACCACGGCTG+AGG | 0.589739 | 6_3:-35456249 | Msa0949380:CDS |
| TCGAGCAATGGCAGTTGAGG+AGG | 0.600942 | 6_3:-35459597 | Msa0949380:CDS |
| AAAGAAGCATGTACTTCCGT+TGG | 0.601567 | 6_3:-35456175 | Msa0949380:CDS |
| CAATGAGGCTGCTTTCGAGG+CGG | 0.604639 | 6_3:-35459648 | Msa0949380:CDS |
| AAGCCTTTGAGGAATGGCTA+AGG | 0.608751 | 6_3:+35455209 | None:intergenic |
| TGCTCGATTAGGGAAGGGAG+AGG | 0.625890 | 6_3:-35456059 | Msa0949380:intron |
| AGTTTGAATGAAATGGAAGT+GGG | 0.628273 | 6_3:+35459707 | None:intergenic |
| CAACAAAGCTTCCTTCAATG+AGG | 0.640413 | 6_3:-35459663 | Msa0949380:CDS |
| ACAGGTGCTCGATTAGGGAA+GGG | 0.651236 | 6_3:-35456064 | Msa0949380:CDS |
| AGGCTGCTTTCGAGGCGGAG+CGG | 0.662213 | 6_3:-35459643 | Msa0949380:CDS |
| CTGCGATGCACAATGCGTGA+AGG | 0.671431 | 6_3:-35457547 | Msa0949380:CDS |
| GTTGCTGTTGACCCGAACAC+AGG | 0.678637 | 6_3:-35456082 | Msa0949380:CDS |
| GCAAGAACCAAAATTACCTG+AGG | 0.689238 | 6_3:+35455245 | None:intergenic |
| AGTTGTTAACTCCTCAACCA+CGG | 0.712250 | 6_3:-35456255 | Msa0949380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATTTTTTTAAATTA+AGG | - | chr6_3:35455761-35455780 | Msa0949380:intron | 0.0% |
| !!! | CTTTGTTTTATTTATTTTTT+TGG | - | chr6_3:35455660-35455679 | Msa0949380:intron | 10.0% |
| !!! | TTTTATTTATTTTTTTGGTT+GGG | - | chr6_3:35455665-35455684 | Msa0949380:intron | 10.0% |
| !! | AAAAATATAGTTACAATAAA+AGG | + | chr6_3:35459411-35459430 | None:intergenic | 10.0% |
| !! | AATTTACCATTCTATTAATA+TGG | + | chr6_3:35455566-35455585 | None:intergenic | 15.0% |
| !! | ATATTAATAGAATGGTAAAT+TGG | - | chr6_3:35455565-35455584 | Msa0949380:intron | 15.0% |
| !!! | GTTTTATTTATTTTTTTGGT+TGG | - | chr6_3:35455664-35455683 | Msa0949380:intron | 15.0% |
| !! | TGCTAATAAAAATTAAATTG+TGG | + | chr6_3:35457537-35457556 | None:intergenic | 15.0% |
| !! | TTATTAGCATTATTAGATAT+AGG | - | chr6_3:35457548-35457567 | Msa0949380:CDS | 15.0% |
| !! | ATTAAGTTAAATTGTAGAAT+CGG | - | chr6_3:35458962-35458981 | Msa0949380:intron | 15.0% |
| !! | TAATTTCTATGGTATAAAAT+AGG | + | chr6_3:35459151-35459170 | None:intergenic | 15.0% |
| !! | TTTATAATATTTAAACAAGC+AGG | + | chr6_3:35459331-35459350 | None:intergenic | 15.0% |
| !!! | AAATATTTCTCTTATTTACA+AGG | - | chr6_3:35459787-35459806 | Msa0949380:exon | 15.0% |
| !!! | ATCATTTTGATAATTCTGAA+TGG | - | chr6_3:35455631-35455650 | Msa0949380:intron | 20.0% |
| !! | CTTATGATAATAGAATTGTA+GGG | + | chr6_3:35456313-35456332 | None:intergenic | 20.0% |
| !! | ACTTATGATAATAGAATTGT+AGG | + | chr6_3:35456314-35456333 | None:intergenic | 20.0% |
| !! | AAAATTATTTACAACCCATT+TGG | + | chr6_3:35457913-35457932 | None:intergenic | 20.0% |
| !! | TAATTTCTTAATTGTACTTG+TGG | + | chr6_3:35458469-35458488 | None:intergenic | 20.0% |
| !! | AAAGTAGATCTTATTGTTAT+TGG | - | chr6_3:35458781-35458800 | Msa0949380:intron | 20.0% |
| !!! | GATTCTACAATTTAACTTAA+TGG | + | chr6_3:35458963-35458982 | None:intergenic | 20.0% |
| !! | ATAAGAATGAGTAATTTCTA+TGG | + | chr6_3:35459162-35459181 | None:intergenic | 20.0% |
| !! | TTATTCTCTACAATAACTAT+TGG | + | chr6_3:35459458-35459477 | None:intergenic | 20.0% |
| !!! | CTTTTCAAAAACAAAATTTG+TGG | + | chr6_3:35459766-35459785 | None:intergenic | 20.0% |
| !!! | CACAAATTTTGTTTTTGAAA+AGG | - | chr6_3:35459764-35459783 | Msa0949380:CDS | 20.0% |
| !!! | TTGTTTTGAAGAAATTGTTG+TGG | - | chr6_3:35455528-35455547 | Msa0949380:intron | 25.0% |
| ! | TTGCTTCCATATTAATAGAA+TGG | - | chr6_3:35455557-35455576 | Msa0949380:intron | 25.0% |
| !! | TTTGAAATGATGGTTTAGAA+GGG | - | chr6_3:35455723-35455742 | Msa0949380:intron | 25.0% |
| !!! | TACTAGCTTGTTATTAACAA+TGG | - | chr6_3:35456021-35456040 | Msa0949380:intron | 25.0% |
| ! | TATTAACAATGGATAAGATG+AGG | - | chr6_3:35456032-35456051 | Msa0949380:intron | 25.0% |
| ! | ATTAACAATGGATAAGATGA+GGG | - | chr6_3:35456033-35456052 | Msa0949380:intron | 25.0% |
| ! | TCAAATAAGTCAATTCAAAC+AGG | + | chr6_3:35456060-35456079 | None:intergenic | 25.0% |
| !! | TTTTTGTATATGCTGTAAGT+TGG | + | chr6_3:35456366-35456385 | None:intergenic | 25.0% |
| ! | TGTTTATCCAAACATTTACA+TGG | - | chr6_3:35456472-35456491 | Msa0949380:intron | 25.0% |
| !! | ATCATCGTAGGTTTTTATAA+TGG | + | chr6_3:35456553-35456572 | None:intergenic | 25.0% |
| !! | TGCTTTTGTAAAGTTTCATT+AGG | - | chr6_3:35456688-35456707 | Msa0949380:intron | 25.0% |
| ! | ACTCTAAATGCATAATTGAT+TGG | - | chr6_3:35457036-35457055 | Msa0949380:intron | 25.0% |
| !!! | TTGTCACTGTTTATTTTGTT+AGG | - | chr6_3:35457167-35457186 | Msa0949380:intron | 25.0% |
| !!! | TTTTTTGGTGAAATTTTGGT+AGG | - | chr6_3:35457227-35457246 | Msa0949380:intron | 25.0% |
| !!! | TTTTTGGTGAAATTTTGGTA+GGG | - | chr6_3:35457228-35457247 | Msa0949380:intron | 25.0% |
| !!! | TGTTATTTGTGATTTTGAGT+AGG | - | chr6_3:35457269-35457288 | Msa0949380:intron | 25.0% |
| ! | ACTTAGAAGTAAAATCAACA+AGG | + | chr6_3:35457513-35457532 | None:intergenic | 25.0% |
| ! | ATCCTTAAATGATTCCAAAT+GGG | - | chr6_3:35457896-35457915 | Msa0949380:intron | 25.0% |
| !! | GTAAGATCTTTTCAATATGA+CGG | - | chr6_3:35457954-35457973 | Msa0949380:intron | 25.0% |
| ! | AAGTGTAAAGTGAGAAAATA+AGG | - | chr6_3:35458071-35458090 | Msa0949380:intron | 25.0% |
| ! | AGTGTAAAGTGAGAAAATAA+GGG | - | chr6_3:35458072-35458091 | Msa0949380:intron | 25.0% |
| ! | AACATTAAAAGAGAACCAAA+AGG | + | chr6_3:35458587-35458606 | None:intergenic | 25.0% |
| !! | ATCTTTTCATCTAATCCAAT+TGG | + | chr6_3:35458760-35458779 | None:intergenic | 25.0% |
| ! | GATTGATTAAACATAACCAT+AGG | + | chr6_3:35458881-35458900 | None:intergenic | 25.0% |
| !! | TTTTCCTGTTATTCATCAAA+AGG | - | chr6_3:35458909-35458928 | Msa0949380:intron | 25.0% |
| !! | CCAAGAAAAATTGAACTTTT+AGG | + | chr6_3:35459090-35459109 | None:intergenic | 25.0% |
| !! | CCTAAAAGTTCAATTTTTCT+TGG | - | chr6_3:35459087-35459106 | Msa0949380:intron | 25.0% |
| ! | TAGGTTAAAAAACCAGTTTA+AGG | + | chr6_3:35459132-35459151 | None:intergenic | 25.0% |
| ! | ATAGTATGATCATAAAACGT+AGG | + | chr6_3:35459217-35459236 | None:intergenic | 25.0% |
| ! | GTTTGTGAGATATTAGTTAT+TGG | + | chr6_3:35459362-35459381 | None:intergenic | 25.0% |
| !!! | TTAGTTGATTTAGTTGATGA+AGG | - | chr6_3:35459503-35459522 | Msa0949380:CDS | 25.0% |
| !! | ATGTAACATTCAAGTTCATA+AGG | + | chr6_3:35459530-35459549 | None:intergenic | 25.0% |
| ! | CATAAACAATGATTAAAGCA+TGG | + | chr6_3:35459740-35459759 | None:intergenic | 25.0% |
| ! | GAATTTTTGTTCACCCAAAA+TGG | - | chr6_3:35455089-35455108 | Msa0949380:three_prime_UTR | 30.0% |
| ! | AATGCTTGTGTTTCCATTTT+GGG | + | chr6_3:35455105-35455124 | None:intergenic | 30.0% |
| ! | TAATGCTTGTGTTTCCATTT+TGG | + | chr6_3:35455106-35455125 | None:intergenic | 30.0% |
| AAATGGAAACACAAGCATTA+CGG | - | chr6_3:35455106-35455125 | Msa0949380:three_prime_UTR | 30.0% | |
| AGTTTGAATGAAATGGAAGT+GGG | + | chr6_3:35455186-35455205 | None:intergenic | 30.0% | |
| ! | CATAGGATTCCTAATTTTGT+TGG | - | chr6_3:35455426-35455445 | Msa0949380:intron | 30.0% |
| !! | ATTGGTTTGAGTTAAGGTTT+AGG | - | chr6_3:35455695-35455714 | Msa0949380:intron | 30.0% |
| ! | TTGGTTTGAGTTAAGGTTTA+GGG | - | chr6_3:35455696-35455715 | Msa0949380:intron | 30.0% |
| ! | GTTTGAAATGATGGTTTAGA+AGG | - | chr6_3:35455722-35455741 | Msa0949380:intron | 30.0% |
| TTGAAATGATGGTTTAGAAG+GGG | - | chr6_3:35455724-35455743 | Msa0949380:intron | 30.0% | |
| TTAACAATGGATAAGATGAG+GGG | - | chr6_3:35456034-35456053 | Msa0949380:intron | 30.0% | |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr6_3:35456094-35456113 | Msa0949380:CDS | 30.0% |
| !! | TAAGTTTTGTGAGACTGTTT+GGG | - | chr6_3:35456095-35456114 | Msa0949380:CDS | 30.0% |
| ! | TGCTCGATAAAAAAGTATGT+TGG | + | chr6_3:35456187-35456206 | None:intergenic | 30.0% |
| TTTCAGACCATGTAAATGTT+TGG | + | chr6_3:35456482-35456501 | None:intergenic | 30.0% | |
| ! | ATAAGCTCTAATATCATCGT+AGG | + | chr6_3:35456565-35456584 | None:intergenic | 30.0% |
| ACTTAAGGCTCTTAAATTGT+GGG | + | chr6_3:35456719-35456738 | None:intergenic | 30.0% | |
| TACTTAAGGCTCTTAAATTG+TGG | + | chr6_3:35456720-35456739 | None:intergenic | 30.0% | |
| ! | CATTTTCAGAACTGTACTTA+AGG | + | chr6_3:35456734-35456753 | None:intergenic | 30.0% |
| ATTTAAAGGACCAAATTGCT+AGG | - | chr6_3:35456834-35456853 | Msa0949380:intron | 30.0% | |
| ! | GTTATCCAAATCGTATCTTT+TGG | - | chr6_3:35456964-35456983 | Msa0949380:intron | 30.0% |
| TTCAACCAAAAGATACGATT+TGG | + | chr6_3:35456972-35456991 | None:intergenic | 30.0% | |
| !!! | TGAATTTCTTTTTCGAACAG+CGG | - | chr6_3:35456988-35457007 | Msa0949380:intron | 30.0% |
| ! | GTCTAGCTTACATAACAAAT+GGG | + | chr6_3:35457087-35457106 | None:intergenic | 30.0% |
| ! | TGTCTAGCTTACATAACAAA+TGG | + | chr6_3:35457088-35457107 | None:intergenic | 30.0% |
| !!! | CGTCTTTTTTGGTGAAATTT+TGG | - | chr6_3:35457223-35457242 | Msa0949380:intron | 30.0% |
| TAGGAATTAATTGATGTGTG+TGG | - | chr6_3:35457288-35457307 | Msa0949380:intron | 30.0% | |
| AGGAATTAATTGATGTGTGT+GGG | - | chr6_3:35457289-35457308 | Msa0949380:intron | 30.0% | |
| ! | CTTTATTTGGAGTTTGTGTA+TGG | - | chr6_3:35457426-35457445 | Msa0949380:intron | 30.0% |
| !! | TCATTTTGATGTAAATGGAC+TGG | - | chr6_3:35457654-35457673 | Msa0949380:intron | 30.0% |
| ACTTCCTGATTAAAAGAATG+CGG | + | chr6_3:35457754-35457773 | None:intergenic | 30.0% | |
| ! | TATGCAAGTTGGACATAATT+AGG | - | chr6_3:35457806-35457825 | Msa0949380:intron | 30.0% |
| GATCCTTAAATGATTCCAAA+TGG | - | chr6_3:35457895-35457914 | Msa0949380:intron | 30.0% | |
| ! | AACCCATTTGGAATCATTTA+AGG | + | chr6_3:35457901-35457920 | None:intergenic | 30.0% |
| AATTACAGGAGTAAGAGATT+TGG | - | chr6_3:35458031-35458050 | Msa0949380:intron | 30.0% | |
| ! | TTACACTTTAGTCACTTTAG+AGG | + | chr6_3:35458059-35458078 | None:intergenic | 30.0% |
| !!! | AAACACACTTATTTTGGATC+CGG | + | chr6_3:35458218-35458237 | None:intergenic | 30.0% |
| ! | GTTTCCAAACACACTTATTT+TGG | + | chr6_3:35458224-35458243 | None:intergenic | 30.0% |
| AAATCTGAACAACTTATAGC+AGG | + | chr6_3:35458342-35458361 | None:intergenic | 30.0% | |
| ! | ATAGATGCCTTTTAGACTTA+TGG | - | chr6_3:35458411-35458430 | Msa0949380:intron | 30.0% |
| ACAATCACCATAAGTCTAAA+AGG | + | chr6_3:35458421-35458440 | None:intergenic | 30.0% | |
| ! | ACTTGCAGTATTTTTCCTTT+TGG | - | chr6_3:35458569-35458588 | Msa0949380:intron | 30.0% |
| ACTATCAATATTTGTGCAGA+TGG | - | chr6_3:35458607-35458626 | Msa0949380:intron | 30.0% | |
| ATAACCATAGGAGATGTAAA+AGG | + | chr6_3:35458869-35458888 | None:intergenic | 30.0% | |
| ! | TGATCCTTTTGATGAATAAC+AGG | + | chr6_3:35458916-35458935 | None:intergenic | 30.0% |
| AATGTTACATCAACTAAGAG+AGG | - | chr6_3:35459540-35459559 | Msa0949380:CDS | 30.0% | |
| ATATGGTATGTTGCGTTATA+TGG | - | chr6_3:35459592-35459611 | Msa0949380:CDS | 30.0% | |
| TATGGTATGTTGCGTTATAT+GGG | - | chr6_3:35459593-35459612 | Msa0949380:CDS | 30.0% | |
| CAGTTTGAATGAAATGGAAG+TGG | + | chr6_3:35455187-35455206 | None:intergenic | 35.0% | |
| CACTTCCATTTCATTCAAAC+TGG | - | chr6_3:35455185-35455204 | Msa0949380:CDS | 35.0% | |
| GGTGATTAGAAAGAGGATAT+GGG | - | chr6_3:35455356-35455375 | Msa0949380:intron | 35.0% | |
| AAAGAGGATATGGGATTTGA+TGG | - | chr6_3:35455365-35455384 | Msa0949380:intron | 35.0% | |
| TTAGGAATCCTATGATGAAC+AGG | + | chr6_3:35455420-35455439 | None:intergenic | 35.0% | |
| !! | AGAGAAGCACCAACAAAATT+AGG | + | chr6_3:35455438-35455457 | None:intergenic | 35.0% |
| !! | AGCTCAATTGGTTTGAGTTA+AGG | - | chr6_3:35455689-35455708 | Msa0949380:intron | 35.0% |
| ! | TTAGGGTGTGTTTGAAATGA+TGG | - | chr6_3:35455713-35455732 | Msa0949380:intron | 35.0% |
| TAAGGTTGTGTTTGAATGGA+GGG | + | chr6_3:35455939-35455958 | None:intergenic | 35.0% | |
| TTAAGGTTGTGTTTGAATGG+AGG | + | chr6_3:35455940-35455959 | None:intergenic | 35.0% | |
| TCCATTCAAACACAACCTTA+AGG | - | chr6_3:35455939-35455958 | Msa0949380:intron | 35.0% | |
| TCCTTAAGGTTGTGTTTGAA+TGG | + | chr6_3:35455943-35455962 | None:intergenic | 35.0% | |
| !! | TATGACATATGAAGAGTGCT+AGG | - | chr6_3:35456137-35456156 | Msa0949380:CDS | 35.0% |
| ! | GAATCTTGCTCTTTAAGAGT+TGG | - | chr6_3:35456217-35456236 | Msa0949380:CDS | 35.0% |
| AGCTTATCTTTAGACTCGTT+AGG | - | chr6_3:35456578-35456597 | Msa0949380:intron | 35.0% | |
| CTACACACCTAAGATGATAT+GGG | + | chr6_3:35456607-35456626 | None:intergenic | 35.0% | |
| CATATCATCTTAGGTGTGTA+GGG | - | chr6_3:35456606-35456625 | Msa0949380:intron | 35.0% | |
| GTCCTGCATTTGATTAGATA+TGG | - | chr6_3:35456640-35456659 | Msa0949380:intron | 35.0% | |
| AGCCATATCTAATCAAATGC+AGG | + | chr6_3:35456645-35456664 | None:intergenic | 35.0% | |
| GAATCAATATCATGTTCAGC+TGG | + | chr6_3:35456761-35456780 | None:intergenic | 35.0% | |
| !! | AGAAATCTGACTTGTTTCTG+AGG | + | chr6_3:35457383-35457402 | None:intergenic | 35.0% |
| ! | GGTAAGATAGGTGCTTTATT+TGG | - | chr6_3:35457413-35457432 | Msa0949380:intron | 35.0% |
| ! | TTTGTGTATGGTGTTGAGTA+GGG | - | chr6_3:35457438-35457457 | Msa0949380:intron | 35.0% |
| ACAAGGCAACAATCATGAAA+AGG | + | chr6_3:35457496-35457515 | None:intergenic | 35.0% | |
| TTACATCAAAATGAGCCACT+GGG | + | chr6_3:35457648-35457667 | None:intergenic | 35.0% | |
| TTTACATCAAAATGAGCCAC+TGG | + | chr6_3:35457649-35457668 | None:intergenic | 35.0% | |
| !! | GTGGCTCATTTTGATGTAAA+TGG | - | chr6_3:35457649-35457668 | Msa0949380:intron | 35.0% |
| ! | ACTTGCATAACTTGTAAAGC+AGG | + | chr6_3:35457795-35457814 | None:intergenic | 35.0% |
| GCTTTACAAGTTATGCAAGT+TGG | - | chr6_3:35457795-35457814 | Msa0949380:intron | 35.0% | |
| CTTCAGCAACAAAGAATTAC+AGG | - | chr6_3:35458017-35458036 | Msa0949380:intron | 35.0% | |
| GGATCCAAAATAAGTGTGTT+TGG | - | chr6_3:35458217-35458236 | Msa0949380:intron | 35.0% | |
| ! | CTCAATTTGAGATGTCATCT+TGG | + | chr6_3:35458255-35458274 | None:intergenic | 35.0% |
| CAAGATGACATCTCAAATTG+AGG | - | chr6_3:35458253-35458272 | Msa0949380:intron | 35.0% | |
| !! | GGTTTAGAATTGCTTTTGGA+GGG | + | chr6_3:35458321-35458340 | None:intergenic | 35.0% |
| !! | AGGTTTAGAATTGCTTTTGG+AGG | + | chr6_3:35458322-35458341 | None:intergenic | 35.0% |
| !! | AGCAGGTTTAGAATTGCTTT+TGG | + | chr6_3:35458325-35458344 | None:intergenic | 35.0% |
| TGGTCTATGTTACATAAAGC+AGG | + | chr6_3:35458449-35458468 | None:intergenic | 35.0% | |
| ATAACTCTCATTTCAGCAGT+TGG | + | chr6_3:35458534-35458553 | None:intergenic | 35.0% | |
| CGAGTCAGATATGTTAACTT+CGG | - | chr6_3:35458684-35458703 | Msa0949380:intron | 35.0% | |
| GAGTCAGATATGTTAACTTC+GGG | - | chr6_3:35458685-35458704 | Msa0949380:intron | 35.0% | |
| ! | AACTCCTTTTACATCTCCTA+TGG | - | chr6_3:35458862-35458881 | Msa0949380:intron | 35.0% |
| CTTAACAACACTATTGACGT+AGG | + | chr6_3:35458940-35458959 | None:intergenic | 35.0% | |
| ATCTAACTCGCATGTGAAAT+CGG | - | chr6_3:35459015-35459034 | Msa0949380:intron | 35.0% | |
| AATTGCTAAGATTGCGAGAT+TGG | - | chr6_3:35459049-35459068 | Msa0949380:intron | 35.0% | |
| TACTCATTCTTATGCAAGAC+CGG | - | chr6_3:35459169-35459188 | Msa0949380:intron | 35.0% | |
| TACTTAGGATCATGAGGAAA+GGG | + | chr6_3:35459241-35459260 | None:intergenic | 35.0% | |
| AATTCCTACTTAGGATCATG+AGG | + | chr6_3:35459247-35459266 | None:intergenic | 35.0% | |
| TCGAGATCAAATTCCTACTT+AGG | + | chr6_3:35459256-35459275 | None:intergenic | 35.0% | |
| GGATTTGCAGAACTTGAATA+TGG | - | chr6_3:35459575-35459594 | Msa0949380:CDS | 35.0% | |
| ! | GTTGTTACCTCAGGTAATTT+TGG | - | chr6_3:35459638-35459657 | Msa0949380:CDS | 35.0% |
| TAAAGAGGAGAGAGAGTGAA+TGG | + | chr6_3:35455141-35455160 | None:intergenic | 40.0% | |
| !!! | AATGGAAGTGGGTTGTTTTG+TGG | + | chr6_3:35455175-35455194 | None:intergenic | 40.0% |
| GGCTTCCAGTTTGAATGAAA+TGG | + | chr6_3:35455193-35455212 | None:intergenic | 40.0% | |
| !! | TTTGTTGTTGTTGCTGTTGG+TGG | + | chr6_3:35455214-35455233 | None:intergenic | 40.0% |
| !! | AGCTTTGTTGTTGTTGCTGT+TGG | + | chr6_3:35455217-35455236 | None:intergenic | 40.0% |
| CAACAAAGCTTCCTTCAATG+AGG | - | chr6_3:35455227-35455246 | Msa0949380:CDS | 40.0% | |
| ATGATCCGAAAGCTTGGAAA+TGG | - | chr6_3:35455334-35455353 | Msa0949380:intron | 40.0% | |
| TGATCCGAAAGCTTGGAAAT+GGG | - | chr6_3:35455335-35455354 | Msa0949380:intron | 40.0% | |
| ATCACCCATTTCCAAGCTTT+CGG | + | chr6_3:35455342-35455361 | None:intergenic | 40.0% | |
| GGAAATGGGTGATTAGAAAG+AGG | - | chr6_3:35455349-35455368 | Msa0949380:intron | 40.0% | |
| GGGTGATTAGAAAGAGGATA+TGG | - | chr6_3:35455355-35455374 | Msa0949380:intron | 40.0% | |
| AGGATATGGGATTTGATGGA+AGG | - | chr6_3:35455369-35455388 | Msa0949380:intron | 40.0% | |
| GGATATGGGATTTGATGGAA+GGG | - | chr6_3:35455370-35455389 | Msa0949380:intron | 40.0% | |
| ATCCTAGACCTGTTCATCAT+AGG | - | chr6_3:35455409-35455428 | Msa0949380:intron | 40.0% | |
| ATCCTATGATGAACAGGTCT+AGG | + | chr6_3:35455414-35455433 | None:intergenic | 40.0% | |
| !! | TTTTGGTTGGGTAGCTCAAT+TGG | - | chr6_3:35455677-35455696 | Msa0949380:intron | 40.0% |
| AATGATGGTTTAGAAGGGGA+AGG | - | chr6_3:35455728-35455747 | Msa0949380:intron | 40.0% | |
| CAAACACAACCTTAAGGAGT+TGG | - | chr6_3:35455945-35455964 | Msa0949380:intron | 40.0% | |
| TCATAACCTCCAACTCCTTA+AGG | + | chr6_3:35455957-35455976 | None:intergenic | 40.0% | |
| ! | AGAGTTGGTCTCACATAAAG+TGG | - | chr6_3:35456232-35456251 | Msa0949380:CDS | 40.0% |
| TTGGTCTCACATAAAGTGGT+TGG | - | chr6_3:35456236-35456255 | Msa0949380:CDS | 40.0% | |
| CCTACACACCTAAGATGATA+TGG | + | chr6_3:35456608-35456627 | None:intergenic | 40.0% | |
| CCATATCATCTTAGGTGTGT+AGG | - | chr6_3:35456605-35456624 | Msa0949380:intron | 40.0% | |
| AAATCACGAGCCTAGCAATT+TGG | + | chr6_3:35456847-35456866 | None:intergenic | 40.0% | |
| CTATCCTATAAGCTTCCTTC+TGG | - | chr6_3:35457198-35457217 | Msa0949380:intron | 40.0% | |
| !!! | TCCTTCTGGTTCGTCTTTTT+TGG | - | chr6_3:35457212-35457231 | Msa0949380:intron | 40.0% |
| ACCAAAAAAGACGAACCAGA+AGG | + | chr6_3:35457216-35457235 | None:intergenic | 40.0% | |
| !! | AATTTTGGTAGGGTGTGGAA+TGG | - | chr6_3:35457238-35457257 | Msa0949380:intron | 40.0% |
| ! | TGTGGGTTTTTATGCAGATG+AGG | - | chr6_3:35457306-35457325 | Msa0949380:intron | 40.0% |
| ! | GTGGGTTTTTATGCAGATGA+GGG | - | chr6_3:35457307-35457326 | Msa0949380:intron | 40.0% |
| !! | ACTTGTTTCTGAGGAGAATC+TGG | + | chr6_3:35457374-35457393 | None:intergenic | 40.0% |
| GTCAGATTTCTCACTCTTTC+AGG | - | chr6_3:35457392-35457411 | Msa0949380:intron | 40.0% | |
| ! | CTCACTCTTTCAGGTAAGAT+AGG | - | chr6_3:35457401-35457420 | Msa0949380:intron | 40.0% |
| ! | GTTTGTGTATGGTGTTGAGT+AGG | - | chr6_3:35457437-35457456 | Msa0949380:intron | 40.0% |
| TAGCAACAAAATGCCACAAG+CGG | - | chr6_3:35457574-35457593 | Msa0949380:intron | 40.0% | |
| CTGAATGTCAGTGATGAGTA+TGG | + | chr6_3:35457609-35457628 | None:intergenic | 40.0% | |
| TACATCAAAATGAGCCACTG+GGG | + | chr6_3:35457647-35457666 | None:intergenic | 40.0% | |
| ! | ACAGCCGCATTCTTTTAATC+AGG | - | chr6_3:35457747-35457766 | Msa0949380:intron | 40.0% |
| ATTTGCTCAGTCCTTTATGC+AGG | + | chr6_3:35457840-35457859 | None:intergenic | 40.0% | |
| TGCATAAAGGACTGAGCAAA+TGG | - | chr6_3:35457839-35457858 | Msa0949380:intron | 40.0% | |
| GACGGTATCTATGACTATGA+TGG | - | chr6_3:35457972-35457991 | Msa0949380:intron | 40.0% | |
| AAGTGAACTGCTCACTTTAG+AGG | - | chr6_3:35458190-35458209 | Msa0949380:intron | 40.0% | |
| AGTTGTTAACTCCTCAACCA+CGG | - | chr6_3:35458635-35458654 | Msa0949380:intron | 40.0% | |
| ! | GGAAGTACATGCTTCTTTGA+TGG | + | chr6_3:35458713-35458732 | None:intergenic | 40.0% |
| ! | AAAGAAGCATGTACTTCCGT+TGG | - | chr6_3:35458715-35458734 | Msa0949380:intron | 40.0% |
| TCCATATTTCGCAACACCAA+CGG | + | chr6_3:35458734-35458753 | None:intergenic | 40.0% | |
| ! | CGCTAATCGATTCCTTAAAC+TGG | - | chr6_3:35459117-35459136 | Msa0949380:intron | 40.0% |
| ! | GTAACAAGCATCGTAAGATC+CGG | + | chr6_3:35459191-35459210 | None:intergenic | 40.0% |
| ACTTAGGATCATGAGGAAAG+GGG | + | chr6_3:35459240-35459259 | None:intergenic | 40.0% | |
| CTACTTAGGATCATGAGGAA+AGG | + | chr6_3:35459242-35459261 | None:intergenic | 40.0% | |
| CTTTCCTCATGATCCTAAGT+AGG | - | chr6_3:35459240-35459259 | Msa0949380:intron | 40.0% | |
| TAAGAGAGGATTGAAGTGCA+GGG | - | chr6_3:35459554-35459573 | Msa0949380:CDS | 40.0% | |
| TCAACACTAGTTGTTACCTC+AGG | - | chr6_3:35459629-35459648 | Msa0949380:CDS | 40.0% | |
| GCAAGAACCAAAATTACCTG+AGG | + | chr6_3:35459648-35459667 | None:intergenic | 40.0% | |
| TTTCCTTAGCCATTCCTCAA+AGG | - | chr6_3:35459678-35459697 | Msa0949380:CDS | 40.0% | |
| ! | TTTGAGAAGCCTTTGAGGAA+TGG | + | chr6_3:35459690-35459709 | None:intergenic | 40.0% |
| ! | ACATCTTTGAGAAGCCTTTG+AGG | + | chr6_3:35459695-35459714 | None:intergenic | 40.0% |
| !! | GTTGTTTTGTGGAGAGAGAG+CGG | + | chr6_3:35455164-35455183 | None:intergenic | 45.0% |
| TGCTTCTCTTGCTGCTGATA+AGG | - | chr6_3:35455449-35455468 | Msa0949380:intron | 45.0% | |
| TTGCTGCTGATAAGGTATGC+TGG | - | chr6_3:35455457-35455476 | Msa0949380:intron | 45.0% | |
| GTTTGAATGGAGGGTTCAAG+AGG | + | chr6_3:35455930-35455949 | None:intergenic | 45.0% | |
| ACACAACCTTAAGGAGTTGG+AGG | - | chr6_3:35455948-35455967 | Msa0949380:intron | 45.0% | |
| TAGGCCACCCATATCATCTT+AGG | - | chr6_3:35456597-35456616 | Msa0949380:intron | 45.0% | |
| CACACCTAAGATGATATGGG+TGG | + | chr6_3:35456604-35456623 | None:intergenic | 45.0% | |
| CGAACCAGAAGGAAGCTTAT+AGG | + | chr6_3:35457205-35457224 | None:intergenic | 45.0% | |
| !! | GGTGAAATTTTGGTAGGGTG+TGG | - | chr6_3:35457233-35457252 | Msa0949380:intron | 45.0% |
| ! | TGTATGGTGTTGAGTAGGGA+GGG | - | chr6_3:35457442-35457461 | Msa0949380:intron | 45.0% |
| AGCAACAAAATGCCACAAGC+GGG | - | chr6_3:35457575-35457594 | Msa0949380:intron | 45.0% | |
| AGGTACACGAACCTGCATAA+AGG | - | chr6_3:35457826-35457845 | Msa0949380:intron | 45.0% | |
| CCAGAGAACTCTTACGTTGA+GGG | + | chr6_3:35458284-35458303 | None:intergenic | 45.0% | |
| !! | TCCGTTGGTGTTGCGAAATA+TGG | - | chr6_3:35458730-35458749 | Msa0949380:intron | 45.0% |
| GCGAAATATGGACGACCAAT+TGG | - | chr6_3:35458742-35458761 | Msa0949380:intron | 45.0% | |
| TCTAACCAGGATCACAGACA+AGG | + | chr6_3:35459282-35459301 | None:intergenic | 45.0% | |
| CTGGTTAGAAAAGTCTGCCT+CGG | - | chr6_3:35459293-35459312 | Msa0949380:intron | 45.0% | |
| !! | CAGACACGAGTCTTGTTTCA+CGG | - | chr6_3:35459385-35459404 | Msa0949380:intron | 45.0% |
| CTAAGAGAGGATTGAAGTGC+AGG | - | chr6_3:35459553-35459572 | Msa0949380:CDS | 45.0% | |
| ! | AAGCCTTTGAGGAATGGCTA+AGG | + | chr6_3:35459684-35459703 | None:intergenic | 45.0% |
| !!! | TTTTACTTATATAAATTTAA+AGG | - | chr6_3:35456820-35456839 | Msa0949380:intron | 5.0% |
| CTCGAAAGCAGCCTCATTGA+AGG | + | chr6_3:35455241-35455260 | None:intergenic | 50.0% | |
| ! | CTTCAATGAGGCTGCTTTCG+AGG | - | chr6_3:35455239-35455258 | Msa0949380:CDS | 50.0% |
| GGAGGAGAAATCTTCGATGC+AGG | - | chr6_3:35455311-35455330 | Msa0949380:CDS | 50.0% | |
| TGCAGGATGATCCGAAAGCT+TGG | - | chr6_3:35455328-35455347 | Msa0949380:intron | 50.0% | |
| GGTTCAAGAGGAGAAGAGAG+GGG | + | chr6_3:35455918-35455937 | None:intergenic | 50.0% | |
| GGGTTCAAGAGGAGAAGAGA+GGG | + | chr6_3:35455919-35455938 | None:intergenic | 50.0% | |
| AGGGTTCAAGAGGAGAAGAG+AGG | + | chr6_3:35455920-35455939 | None:intergenic | 50.0% | |
| ! | GTGTATGGTGTTGAGTAGGG+AGG | - | chr6_3:35457441-35457460 | Msa0949380:intron | 50.0% |
| ! | GTATGGTGTTGAGTAGGGAG+GGG | - | chr6_3:35457443-35457462 | Msa0949380:intron | 50.0% |
| GCAACAAAATGCCACAAGCG+GGG | - | chr6_3:35457576-35457595 | Msa0949380:intron | 50.0% | |
| CAACAAAATGCCACAAGCGG+GGG | - | chr6_3:35457577-35457596 | Msa0949380:intron | 50.0% | |
| ! | ACTGCTCACTTTAGAGGAGC+CGG | - | chr6_3:35458196-35458215 | Msa0949380:intron | 50.0% |
| CCCTCAACGTAAGAGTTCTC+TGG | - | chr6_3:35458281-35458300 | Msa0949380:intron | 50.0% | |
| GCCAGAGAACTCTTACGTTG+AGG | + | chr6_3:35458285-35458304 | None:intergenic | 50.0% | |
| AAAAAACCTGTCCTCAGCCG+TGG | + | chr6_3:35458655-35458674 | None:intergenic | 50.0% | |
| CTAATCGAGCACCTGTGTTC+GGG | + | chr6_3:35458822-35458841 | None:intergenic | 50.0% | |
| CCTAATCGAGCACCTGTGTT+CGG | + | chr6_3:35458823-35458842 | None:intergenic | 50.0% | |
| CGAACACAGGTGCTCGATTA+GGG | - | chr6_3:35458821-35458840 | Msa0949380:intron | 50.0% | |
| ACAGGTGCTCGATTAGGGAA+GGG | - | chr6_3:35458826-35458845 | Msa0949380:intron | 50.0% | |
| ATGCGAGTTAGATCGCTCAG+TGG | + | chr6_3:35459008-35459027 | None:intergenic | 50.0% | |
| GACAACCTTGTCTGTGATCC+TGG | - | chr6_3:35459274-35459293 | Msa0949380:intron | 50.0% | |
| ! | CGAGGCAGACTTTTCTAACC+AGG | + | chr6_3:35459295-35459314 | None:intergenic | 50.0% |
| GTGGAGAGAGAGCGGTAAAG+AGG | + | chr6_3:35455156-35455175 | None:intergenic | 55.0% | |
| ! | CAATGAGGCTGCTTTCGAGG+CGG | - | chr6_3:35455242-35455261 | Msa0949380:CDS | 55.0% |
| ACGTCGAGCAATGGCAGTTG+AGG | - | chr6_3:35455290-35455309 | Msa0949380:CDS | 55.0% | |
| TCGAGCAATGGCAGTTGAGG+AGG | - | chr6_3:35455293-35455312 | Msa0949380:CDS | 55.0% | |
| CAAGAGGAGAAGAGAGGGGA+GGG | + | chr6_3:35455914-35455933 | None:intergenic | 55.0% | |
| TCAAGAGGAGAAGAGAGGGG+AGG | + | chr6_3:35455915-35455934 | None:intergenic | 55.0% | |
| CTGCGATGCACAATGCGTGA+AGG | - | chr6_3:35457343-35457362 | Msa0949380:intron | 55.0% | |
| GTGTTGAGTAGGGAGGGGAA+AGG | - | chr6_3:35457448-35457467 | Msa0949380:intron | 55.0% | |
| GCCATACACAACTTCCCCAG+TGG | - | chr6_3:35457630-35457649 | Msa0949380:intron | 55.0% | |
| GCCACTGGGGAAGTTGTGTA+TGG | + | chr6_3:35457634-35457653 | None:intergenic | 55.0% | |
| TAACTCCTCAACCACGGCTG+AGG | - | chr6_3:35458641-35458660 | Msa0949380:intron | 55.0% | |
| ! | GTTGCTGTTGACCCGAACAC+AGG | - | chr6_3:35458808-35458827 | Msa0949380:intron | 55.0% |
| CCGAACACAGGTGCTCGATT+AGG | - | chr6_3:35458820-35458839 | Msa0949380:intron | 55.0% | |
| CACAGGTGCTCGATTAGGGA+AGG | - | chr6_3:35458825-35458844 | Msa0949380:intron | 55.0% | |
| TGCTCGATTAGGGAAGGGAG+AGG | - | chr6_3:35458831-35458850 | Msa0949380:intron | 55.0% | |
| ! | CGCAGAAGCACGTCGAGCAA+TGG | - | chr6_3:35455281-35455300 | Msa0949380:CDS | 60.0% |
| ATGGCATTCTCCCCCGCTTG+TGG | + | chr6_3:35457590-35457609 | None:intergenic | 60.0% | |
| !! | TTTGGAGGGTGCTGAACGCG+CGG | + | chr6_3:35458307-35458326 | None:intergenic | 60.0% |
| GCAGGTGAAACAGCATGCCG+AGG | + | chr6_3:35459313-35459332 | None:intergenic | 60.0% | |
| ! | AGGCTGCTTTCGAGGCGGAG+CGG | - | chr6_3:35455247-35455266 | Msa0949380:CDS | 65.0% |
| CCTGTCCTCAGCCGTGGTTG+AGG | + | chr6_3:35458649-35458668 | None:intergenic | 65.0% | |
| CCTCAACCACGGCTGAGGAC+AGG | - | chr6_3:35458646-35458665 | Msa0949380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 35455088 | 35459824 | 35455088 | ID=Msa0949380;Name=Msa0949380 |
| chr6_3 | mRNA | 35455088 | 35459824 | 35455088 | ID=Msa0949380-mRNA-1;Parent=Msa0949380;Name=Msa0949380-mRNA-1;_AED=0.02;_eAED=0.02;_QI=20|1|1|1|1|1|4|64|288 |
| chr6_3 | exon | 35455088 | 35455337 | 35455088 | ID=Msa0949380-mRNA-1:exon:8904;Parent=Msa0949380-mRNA-1 |
| chr6_3 | exon | 35456060 | 35456286 | 35456060 | ID=Msa0949380-mRNA-1:exon:8903;Parent=Msa0949380-mRNA-1 |
| chr6_3 | exon | 35457499 | 35457589 | 35457499 | ID=Msa0949380-mRNA-1:exon:8902;Parent=Msa0949380-mRNA-1 |
| chr6_3 | exon | 35459442 | 35459824 | 35459442 | ID=Msa0949380-mRNA-1:exon:8901;Parent=Msa0949380-mRNA-1 |
| chr6_3 | five_prime_UTR | 35459805 | 35459824 | 35459805 | ID=Msa0949380-mRNA-1:five_prime_utr;Parent=Msa0949380-mRNA-1 |
| chr6_3 | CDS | 35459442 | 35459804 | 35459442 | ID=Msa0949380-mRNA-1:cds;Parent=Msa0949380-mRNA-1 |
| chr6_3 | CDS | 35457499 | 35457589 | 35457499 | ID=Msa0949380-mRNA-1:cds;Parent=Msa0949380-mRNA-1 |
| chr6_3 | CDS | 35456060 | 35456286 | 35456060 | ID=Msa0949380-mRNA-1:cds;Parent=Msa0949380-mRNA-1 |
| chr6_3 | CDS | 35455152 | 35455337 | 35455152 | ID=Msa0949380-mRNA-1:cds;Parent=Msa0949380-mRNA-1 |
| chr6_3 | three_prime_UTR | 35455088 | 35455151 | 35455088 | ID=Msa0949380-mRNA-1:three_prime_utr;Parent=Msa0949380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
