AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1124070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124070 MtrunA17_Chr7g0263971 99.275 138 0 1 1 137 349 486 5.08e-94 279
Msa1124070 MtrunA17_Chr2g0282761 50.000 96 46 2 21 114 4 99 1.32e-23 93.6
Msa1124070 MtrunA17_Chr2g0324921 44.545 110 51 2 21 120 4 113 1.43e-23 93.6
Msa1124070 MtrunA17_Chr4g0040501 47.000 100 47 2 21 114 4 103 3.85e-23 92.4
Msa1124070 MtrunA17_Chr2g0282741 48.421 95 48 1 21 114 4 98 7.95e-23 91.7
Msa1124070 MtrunA17_Chr4g0006391 55.385 65 29 0 21 85 4 68 2.50e-21 87.4
Msa1124070 MtrunA17_Chr3g0138471 53.846 65 30 0 21 85 4 68 5.79e-21 86.3
Msa1124070 MtrunA17_Chr8g0344721 48.276 87 37 2 17 95 6 92 2.80e-19 80.5
Msa1124070 MtrunA17_Chr6g0478651 53.571 84 34 2 20 103 67 145 3.47e-19 82.4
Msa1124070 MtrunA17_Chr8g0334811 52.747 91 36 3 17 105 10 95 1.26e-18 80.5
Msa1124070 MtrunA17_Chr7g0269841 62.121 66 24 1 20 85 25 89 3.67e-18 79.0
Msa1124070 MtrunA17_Chr5g0427221 52.174 69 32 1 16 84 43 110 1.46e-17 73.9
Msa1124070 MtrunA17_Chr3g0087741 59.091 66 26 1 20 85 88 152 3.79e-17 76.6
Msa1124070 MtrunA17_Chr2g0333221 51.724 87 38 3 21 105 70 154 7.14e-17 75.9
Msa1124070 MtrunA17_Chr4g0021141 50.000 78 38 1 7 84 8 84 1.21e-16 71.2
Msa1124070 MtrunA17_Chr7g0271891 50.000 68 31 1 22 86 17 84 3.49e-16 70.9
Msa1124070 MtrunA17_Chr3g0123861 49.351 77 37 1 9 85 70 144 4.40e-16 73.6
Msa1124070 MtrunA17_Chr1g0209551 50.000 68 33 1 19 86 14 80 4.98e-16 73.2
Msa1124070 MtrunA17_Chr5g0415731 39.080 87 46 1 21 100 5 91 2.51e-15 68.2
Msa1124070 MtrunA17_Chr4g0010781 53.623 69 31 1 17 85 82 149 7.50e-15 70.1
Msa1124070 MtrunA17_Chr7g0242951 52.941 68 30 1 17 84 23 88 9.86e-15 69.7
Msa1124070 MtrunA17_Chr2g0295821 36.792 106 65 1 15 120 98 201 7.19e-14 67.0
Msa1124070 MtrunA17_Chr3g0093111 48.485 66 33 1 21 85 2 67 1.31e-13 65.9
Msa1124070 MtrunA17_Chr4g0044331 50.000 62 28 1 28 86 19 80 1.80e-13 63.5
Msa1124070 MtrunA17_Chr5g0414471 45.588 68 36 1 19 86 23 89 2.57e-13 65.5
Msa1124070 MtrunA17_Chr6g0460381 47.059 68 32 1 21 84 3 70 2.88e-13 63.9
Msa1124070 MtrunA17_Chr4g0066631 45.946 74 38 1 21 94 67 138 3.99e-13 65.1
Msa1124070 MtrunA17_Chr2g0328581 46.154 65 33 1 23 87 77 139 1.33e-12 62.0
Msa1124070 MtrunA17_Chr7g0258061 43.590 78 43 1 19 96 20 96 2.18e-12 62.4
Msa1124070 MtrunA17_Chr7g0253281 49.231 65 31 1 21 85 54 116 3.29e-12 62.0
Msa1124070 MtrunA17_Chr2g0295831 46.970 66 33 1 21 86 110 173 6.15e-12 60.8
Msa1124070 MtrunA17_Chr1g0173931 43.243 74 41 1 23 96 40 112 6.85e-12 61.2
Msa1124070 MtrunA17_Chr1g0159491 43.662 71 39 1 16 86 1 70 1.03e-11 57.0
Msa1124070 MtrunA17_Chr2g0307061 36.264 91 53 3 16 103 105 193 1.56e-11 60.5
Msa1124070 MtrunA17_Chr1g0206121 48.438 64 31 1 21 84 35 96 1.74e-11 60.1
Msa1124070 MtrunA17_Chr4g0061421 44.928 69 35 1 19 84 6 74 3.19e-11 59.7
Msa1124070 MtrunA17_Chr3g0091361 46.154 65 35 0 21 85 5 69 3.29e-11 58.5
Msa1124070 MtrunA17_Chr5g0426951 37.778 90 55 1 10 99 72 160 3.61e-11 59.3
Msa1124070 MtrunA17_Chr1g0178901 49.231 65 31 1 21 85 67 129 4.45e-11 59.3
Msa1124070 MtrunA17_Chr7g0257081 33.051 118 59 1 4 101 1062 1179 7.65e-11 58.5
Msa1124070 MtrunA17_Chr1g0191281 49.296 71 33 2 15 84 60 128 9.63e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1124070 AT5G03160.1 75.238 105 24 1 1 105 350 452 5.99e-41 142
Msa1124070 AT5G25530.2 45.690 116 54 4 21 127 4 119 1.28e-23 94.0
Msa1124070 AT5G01390.3 55.385 65 29 0 21 85 4 68 9.38e-22 87.4
Msa1124070 AT2G20560.1 45.455 99 45 2 21 118 4 94 1.03e-21 89.0
Msa1124070 AT5G01390.4 55.385 65 29 0 21 85 4 68 1.32e-21 86.7
Msa1124070 AT5G01390.2 55.385 65 29 0 21 85 4 68 2.10e-21 87.0
Msa1124070 AT4G28480.2 43.000 100 50 3 21 114 4 102 2.81e-21 87.0
Msa1124070 AT3G08910.1 53.846 65 30 0 21 85 4 68 3.33e-21 87.4
Msa1124070 AT4G28480.1 43.000 100 50 3 21 114 4 102 3.48e-21 87.4
Msa1124070 AT5G01390.1 55.385 65 29 0 21 85 4 68 4.37e-21 87.0
Msa1124070 AT5G25530.1 42.742 124 54 5 21 127 4 127 7.18e-21 86.7
Msa1124070 AT2G22360.1 52.326 86 38 2 21 105 86 169 2.23e-19 83.2
Msa1124070 AT1G80030.2 50.000 108 46 4 21 127 75 175 2.63e-19 83.2
Msa1124070 AT1G80030.3 50.000 108 46 4 21 127 75 175 2.63e-19 83.2
Msa1124070 AT1G80030.1 50.000 108 46 4 21 127 75 175 2.63e-19 83.2
Msa1124070 AT1G80030.4 51.376 109 43 5 21 127 75 175 2.63e-19 83.2
Msa1124070 AT1G10350.1 47.692 65 34 0 21 85 4 68 3.80e-19 82.0
Msa1124070 AT4G39960.1 51.163 86 39 2 21 105 85 168 6.81e-19 82.0
Msa1124070 AT4G39960.2 51.163 86 39 2 21 105 85 168 6.81e-19 82.0
Msa1124070 AT1G59725.1 51.429 70 32 2 21 88 4 73 9.91e-19 80.5
Msa1124070 AT3G47940.1 55.385 65 28 1 21 84 4 68 2.95e-18 79.7
Msa1124070 AT3G62600.1 54.795 73 32 1 13 85 18 89 1.12e-16 75.1
Msa1124070 AT1G56300.1 49.296 71 33 1 19 86 11 81 2.29e-16 71.2
Msa1124070 AT1G56300.2 49.296 71 33 1 19 86 11 81 2.53e-16 70.5
Msa1124070 AT3G17830.1 41.000 100 48 3 12 105 54 148 3.84e-16 73.9
Msa1124070 AT1G68370.1 46.250 80 40 2 17 94 13 91 7.36e-16 73.2
Msa1124070 AT5G48030.1 50.633 79 36 2 20 96 93 170 7.84e-16 73.2
Msa1124070 AT3G14200.1 42.105 95 46 3 8 95 1 93 1.42e-15 70.9
Msa1124070 AT1G72416.3 38.554 83 46 2 18 95 2 84 2.42e-15 69.7
Msa1124070 AT1G72416.1 38.554 83 46 2 18 95 2 84 5.01e-15 68.6
Msa1124070 AT1G72416.4 38.554 83 46 2 18 95 2 84 5.72e-15 68.6
Msa1124070 AT2G41000.2 34.409 93 55 2 21 109 3 93 1.09e-14 68.2
Msa1124070 AT1G72416.2 38.554 83 46 2 18 95 2 84 1.20e-14 67.8
Msa1124070 AT2G41000.1 34.409 93 55 2 21 109 3 93 1.47e-14 67.4
Msa1124070 AT1G59980.2 35.537 121 66 3 18 127 20 139 2.60e-14 68.6
Msa1124070 AT1G59980.1 35.537 121 66 3 18 127 20 139 3.34e-14 68.6
Msa1124070 AT1G71000.2 47.887 71 34 1 19 86 6 76 3.41e-14 65.9
Msa1124070 AT1G71000.1 49.296 71 33 1 19 86 6 76 4.43e-14 65.5
Msa1124070 AT2G33735.1 46.970 66 34 1 20 85 21 85 1.20e-13 63.5
Msa1124070 AT2G33735.2 46.970 66 34 1 20 85 21 85 1.20e-13 63.5
Msa1124070 AT3G12170.1 38.202 89 54 1 17 105 7 94 2.00e-13 65.5
Msa1124070 AT5G16650.2 51.471 68 32 1 17 84 7 73 2.57e-13 63.5
Msa1124070 AT3G12170.2 38.202 89 54 1 17 105 43 130 3.00e-13 65.5
Msa1124070 AT5G16650.1 51.471 68 32 1 17 84 7 73 4.13e-13 62.4
Msa1124070 AT5G05750.1 40.580 69 39 1 16 84 109 175 5.38e-13 64.7
Msa1124070 AT5G06910.1 37.349 83 51 1 23 105 31 112 8.67e-13 63.9
Msa1124070 AT5G18140.1 40.541 74 42 1 20 93 76 147 1.82e-12 63.2
Msa1124070 AT3G08970.1 40.517 116 46 3 17 132 23 115 2.58e-12 63.2
Msa1124070 AT3G08970.2 40.517 116 46 3 17 132 23 115 2.58e-12 63.2
Msa1124070 AT5G59610.2 37.895 95 54 3 4 97 55 145 3.05e-12 62.0
Msa1124070 AT5G59610.1 37.895 95 54 3 4 97 55 145 5.02e-12 61.6
Msa1124070 AT5G59610.4 37.895 95 54 3 4 97 55 145 5.02e-12 61.6
Msa1124070 AT5G59610.3 37.895 95 54 3 4 97 55 145 5.10e-12 61.6
Msa1124070 AT5G59610.5 37.895 95 54 3 4 97 55 145 5.10e-12 61.6
Msa1124070 AT3G57340.1 38.571 70 41 1 15 84 107 174 9.34e-12 61.2
Msa1124070 AT3G57340.2 38.571 70 41 1 15 84 107 174 9.34e-12 61.2
Msa1124070 AT1G74250.1 45.833 72 35 1 17 84 7 78 1.33e-11 61.2
Msa1124070 AT1G24120.1 39.706 68 40 1 19 86 18 84 1.38e-11 60.8
Msa1124070 AT5G49060.2 42.857 70 38 1 16 85 94 161 1.79e-11 60.5
Msa1124070 AT5G49060.1 42.857 70 38 1 16 85 94 161 1.79e-11 60.5
Msa1124070 AT4G19570.1 40.845 71 40 1 15 85 60 128 2.13e-11 60.5
Msa1124070 AT1G61770.1 48.438 64 31 1 21 84 34 95 2.16e-11 60.1
Msa1124070 AT5G37380.8 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.4 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.7 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.2 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.6 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.1 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.5 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.3 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G37380.9 41.333 75 42 1 15 89 60 132 2.39e-11 60.5
Msa1124070 AT5G18750.1 47.143 70 35 1 15 84 60 127 2.99e-11 60.1
Msa1124070 AT3G04980.1 45.714 70 36 1 15 84 42 109 5.90e-11 59.3
Msa1124070 AT3G04980.2 45.714 70 36 1 15 84 60 127 6.13e-11 59.3
Msa1124070 AT3G04980.3 45.714 70 36 1 15 84 60 127 6.13e-11 59.3

Find 68 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGATTATTACAAGATTT+TGG 0.134713 7_3:+75109575 Msa1124070:CDS
AACCACCGCATAAAACTTTA+TGG 0.174264 7_3:-75110398 None:intergenic
GGAATGGGTGGCGGCGGCGG+TGG 0.261593 7_3:+75110028 Msa1124070:CDS
TTCCCTGGTGGAGGCTTTCC+CGG 0.267174 7_3:+75110109 Msa1124070:CDS
ATGGGTGGCGGCGGCGGTGG+AGG 0.326629 7_3:+75110031 Msa1124070:CDS
CACCCATTCCTGATTCTTCA+AGG 0.347393 7_3:-75110015 None:intergenic
CGTATGCAGCAGCGATTTCT+CGG 0.352911 7_3:-75109710 None:intergenic
GGCTTTCCCGGTGGCGGCGG+CGG 0.366054 7_3:+75110121 Msa1124070:CDS
ACAAATAGTGTAATGGTTGC+TGG 0.371153 7_3:-75110448 None:intergenic
TCAGGAATGGGTGGCGGCGG+CGG 0.371929 7_3:+75110025 Msa1124070:CDS
GTCTTGTCTTGCAAGCAACT+TGG 0.389769 7_3:-75110293 None:intergenic
CTTATCCGGGTGCCATTGTA+AGG 0.399906 7_3:-75109652 None:intergenic
TTTCCCGGTGGCGGCGGCGG+TGG 0.402220 7_3:+75110124 Msa1124070:CDS
TCTTGTCTTGCAAGCAACTT+GGG 0.407286 7_3:-75110292 None:intergenic
GGGGAGGACCTTGAAGAATC+AGG 0.418433 7_3:+75110007 Msa1124070:CDS
ACCACCGCATAAAACTTTAT+GGG 0.437102 7_3:-75110397 None:intergenic
TTCAATCCATTCGGTGGTGG+TGG 0.445135 7_3:+75110055 Msa1124070:CDS
CGGATAAGAATGTTGACAAA+AGG 0.448605 7_3:+75109667 Msa1124070:CDS
GCGGTGGTTGATACTTTGTA+AGG 0.452888 7_3:+75110412 Msa1124070:three_prime_UTR
GGAGGCTTTCCCGGTGGCGG+CGG 0.460764 7_3:+75110118 Msa1124070:CDS
CCACCGGGAAAGCCTCCACC+AGG 0.461120 7_3:-75110112 None:intergenic
ATTCTTCAAGGTCCTCCCCT+TGG 0.461750 7_3:-75110003 None:intergenic
GATGGTGGCTTCCCTGGTGG+AGG 0.465504 7_3:+75110100 Msa1124070:CDS
TCTTGCAAGCAACTTGGGGA+TGG 0.472326 7_3:-75110287 None:intergenic
ATGGGGATAGGTGTTAGTTA+AGG 0.473409 7_3:+75110355 Msa1124070:three_prime_UTR
GAATCAGGAATGGGTGGCGG+CGG 0.483700 7_3:+75110022 Msa1124070:CDS
GTAACCACCGCCGCCGCCAC+CGG 0.485366 7_3:-75110128 None:intergenic
GGTGGAGGCTTTCCCGGTGG+CGG 0.486071 7_3:+75110115 Msa1124070:CDS
TATGTAAACAAATAGTGTAA+TGG 0.510193 7_3:-75110455 None:intergenic
GGTGGAGGTTTCAATCCATT+CGG 0.510505 7_3:+75110046 Msa1124070:CDS
GGTTTCAATCCATTCGGTGG+TGG 0.522209 7_3:+75110052 Msa1124070:CDS
GGTTGTTGAGGTAAATACTT+AGG 0.523924 7_3:+75110264 Msa1124070:three_prime_UTR
TTGCTTTGTGATAAAAGTGA+TGG 0.524348 7_3:+75110336 Msa1124070:three_prime_UTR
GACCTTGAAGAATCAGGAAT+GGG 0.528456 7_3:+75110013 Msa1124070:CDS
GTGGTCCCTTGAGGAAATCA+AGG 0.531579 7_3:-75110211 None:intergenic
TAACCACCGCCGCCGCCACC+GGG 0.533943 7_3:-75110127 None:intergenic
TGCTTTGTGATAAAAGTGAT+GGG 0.536961 7_3:+75110337 Msa1124070:three_prime_UTR
GGATAAGAATGTTGACAAAA+GGG 0.547327 7_3:+75109668 Msa1124070:CDS
GGACCTTGAAGAATCAGGAA+TGG 0.557178 7_3:+75110012 Msa1124070:CDS
CTATAGCCTTGATTTCCTCA+AGG 0.568901 7_3:+75110205 Msa1124070:three_prime_UTR
TGCTGTCCACCACCACCGAA+TGG 0.571837 7_3:-75110061 None:intergenic
TTTAAAGATCAGCAAACGCA+AGG 0.572466 7_3:+75109557 Msa1124070:CDS
TATAGCCTTGATTTCCTCAA+GGG 0.579509 7_3:+75110206 Msa1124070:three_prime_UTR
CCACCGCATAAAACTTTATG+GGG 0.582040 7_3:-75110396 None:intergenic
AGAAATCGCTGCTGCATACG+AGG 0.583278 7_3:+75109713 Msa1124070:CDS
GTTGACTAATCACTTGCTAA+CGG 0.585750 7_3:+75110243 Msa1124070:three_prime_UTR
GAAGAATCAGGAATGGGTGG+CGG 0.587103 7_3:+75110019 Msa1124070:CDS
GTGATAAAAGTGATGGGGAT+AGG 0.590010 7_3:+75110343 Msa1124070:three_prime_UTR
TTTGATGGTGGCTTCCCTGG+TGG 0.596620 7_3:+75110097 Msa1124070:CDS
GGGATAGGTGTTAGTTAAGG+AGG 0.596798 7_3:+75110358 Msa1124070:three_prime_UTR
TCACTTGCTAACGGTTGTTG+AGG 0.598288 7_3:+75110252 Msa1124070:three_prime_UTR
ATTAGTCAACATTATAGATG+TGG 0.600096 7_3:-75110230 None:intergenic
ATTATAGATGTGGTCCCTTG+AGG 0.607468 7_3:-75110220 None:intergenic
GGAGGTTTCAATCCATTCGG+TGG 0.610043 7_3:+75110049 Msa1124070:CDS
CTTGTCTTGCAAGCAACTTG+GGG 0.613305 7_3:-75110291 None:intergenic
ACAAGAAACTTGCCTTACAA+TGG 0.614939 7_3:+75109640 Msa1124070:CDS
ATATTCGTGAAGCATTAATG+AGG 0.615631 7_3:+75109523 Msa1124070:CDS
CTTGAAGAATCAGGAATGGG+TGG 0.620295 7_3:+75110016 Msa1124070:CDS
TATTCGTGAAGCATTAATGA+GGG 0.627259 7_3:+75109524 Msa1124070:CDS
CCTGGTGGAGGCTTTCCCGG+TGG 0.627865 7_3:+75110112 Msa1124070:CDS
AACGCACAAGATACGACCAA+GGG 0.630643 7_3:+75109987 Msa1124070:CDS
TGACAAAAGGGAAGAAGCAG+AGG 0.631426 7_3:+75109680 Msa1124070:CDS
AAACGCACAAGATACGACCA+AGG 0.660195 7_3:+75109986 Msa1124070:CDS
ACTTGCCTTACAATGGCACC+CGG 0.661475 7_3:+75109647 Msa1124070:CDS
CACCGGGAAAGCCTCCACCA+GGG 0.665138 7_3:-75110111 None:intergenic
CACAAGATACGACCAAGGGG+AGG 0.668043 7_3:+75109991 Msa1124070:CDS
GCTTTGTGATAAAAGTGATG+GGG 0.672562 7_3:+75110338 Msa1124070:three_prime_UTR
ACGCACAAGATACGACCAAG+GGG 0.726879 7_3:+75109988 Msa1124070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGAATATTTTGTTGAATAA+CGG + chr7_3:75109925-75109944 Msa1124070:intron 15.0%
!!! TTAATCCTTAAATTTTTCTT+AGG + chr7_3:75110177-75110196 Msa1124070:three_prime_UTR 15.0%
!!! TAATCCTTAAATTTTTCTTA+GGG + chr7_3:75110178-75110197 Msa1124070:three_prime_UTR 15.0%
!!! ATGAATATTTTGTTGAATAA+CGG + chr7_3:75109925-75109944 Msa1124070:intron 15.0%
!!! TTAATCCTTAAATTTTTCTT+AGG + chr7_3:75110177-75110196 Msa1124070:three_prime_UTR 15.0%
!!! TAATCCTTAAATTTTTCTTA+GGG + chr7_3:75110178-75110197 Msa1124070:three_prime_UTR 15.0%
!!! TATTATATACCATGCTTTTT+TGG + chr7_3:75109817-75109836 Msa1124070:intron 20.0%
!! TCAACAAAATATTCATATCT+AGG - chr7_3:75109921-75109940 None:intergenic 20.0%
!!! TGAATATTTTGTTGAATAAC+GGG + chr7_3:75109926-75109945 Msa1124070:intron 20.0%
!!! TTACGAATTTCATTTTTGAT+TGG + chr7_3:75110147-75110166 Msa1124070:exon 20.0%
!! TATGTAAACAAATAGTGTAA+TGG - chr7_3:75110458-75110477 None:intergenic 20.0%
!!! TATTATATACCATGCTTTTT+TGG + chr7_3:75109817-75109836 Msa1124070:intron 20.0%
!! TCAACAAAATATTCATATCT+AGG - chr7_3:75109921-75109940 None:intergenic 20.0%
!!! TGAATATTTTGTTGAATAAC+GGG + chr7_3:75109926-75109945 Msa1124070:intron 20.0%
!!! TTACGAATTTCATTTTTGAT+TGG + chr7_3:75110147-75110166 Msa1124070:exon 20.0%
!! TATGTAAACAAATAGTGTAA+TGG - chr7_3:75110458-75110477 None:intergenic 20.0%
!! CAAGGATTATTACAAGATTT+TGG + chr7_3:75109575-75109594 Msa1124070:CDS 25.0%
! GAGTTATAATAGGATTCATT+TGG + chr7_3:75109890-75109909 Msa1124070:intron 25.0%
!!! CAATTTCACTTTACTTTTGA+TGG + chr7_3:75110082-75110101 Msa1124070:CDS 25.0%
! ATTAGTCAACATTATAGATG+TGG - chr7_3:75110233-75110252 None:intergenic 25.0%
!! CAAGGATTATTACAAGATTT+TGG + chr7_3:75109575-75109594 Msa1124070:CDS 25.0%
! GAGTTATAATAGGATTCATT+TGG + chr7_3:75109890-75109909 Msa1124070:intron 25.0%
!!! CAATTTCACTTTACTTTTGA+TGG + chr7_3:75110082-75110101 Msa1124070:CDS 25.0%
! ATTAGTCAACATTATAGATG+TGG - chr7_3:75110233-75110252 None:intergenic 25.0%
! ATATTCGTGAAGCATTAATG+AGG + chr7_3:75109523-75109542 Msa1124070:CDS 30.0%
! TATTCGTGAAGCATTAATGA+GGG + chr7_3:75109524-75109543 Msa1124070:CDS 30.0%
! TTTTGTCAACATTCTTATCC+GGG - chr7_3:75109668-75109687 None:intergenic 30.0%
! CTTTTGTCAACATTCTTATC+CGG - chr7_3:75109669-75109688 None:intergenic 30.0%
GGATAAGAATGTTGACAAAA+GGG + chr7_3:75109668-75109687 Msa1124070:CDS 30.0%
CTGAACAAGGAAAAGAAATA+AGG - chr7_3:75109759-75109778 None:intergenic 30.0%
TTCTGATTAAAGTCTGAACA+AGG - chr7_3:75109772-75109791 None:intergenic 30.0%
!! TTTCACTTTACTTTTGATGG+TGG + chr7_3:75110085-75110104 Msa1124070:CDS 30.0%
CTCTCCCTAAGAAAAATTTA+AGG - chr7_3:75110185-75110204 None:intergenic 30.0%
TTGCTTTGTGATAAAAGTGA+TGG + chr7_3:75110336-75110355 Msa1124070:three_prime_UTR 30.0%
TGCTTTGTGATAAAAGTGAT+GGG + chr7_3:75110337-75110356 Msa1124070:three_prime_UTR 30.0%
! ATATTCGTGAAGCATTAATG+AGG + chr7_3:75109523-75109542 Msa1124070:CDS 30.0%
! TATTCGTGAAGCATTAATGA+GGG + chr7_3:75109524-75109543 Msa1124070:CDS 30.0%
! TTTTGTCAACATTCTTATCC+GGG - chr7_3:75109668-75109687 None:intergenic 30.0%
! CTTTTGTCAACATTCTTATC+CGG - chr7_3:75109669-75109688 None:intergenic 30.0%
GGATAAGAATGTTGACAAAA+GGG + chr7_3:75109668-75109687 Msa1124070:CDS 30.0%
CTGAACAAGGAAAAGAAATA+AGG - chr7_3:75109759-75109778 None:intergenic 30.0%
TTCTGATTAAAGTCTGAACA+AGG - chr7_3:75109772-75109791 None:intergenic 30.0%
!! TTTCACTTTACTTTTGATGG+TGG + chr7_3:75110085-75110104 Msa1124070:CDS 30.0%
CTCTCCCTAAGAAAAATTTA+AGG - chr7_3:75110185-75110204 None:intergenic 30.0%
TTGCTTTGTGATAAAAGTGA+TGG + chr7_3:75110336-75110355 Msa1124070:three_prime_UTR 30.0%
TGCTTTGTGATAAAAGTGAT+GGG + chr7_3:75110337-75110356 Msa1124070:three_prime_UTR 30.0%
TTTAAAGATCAGCAAACGCA+AGG + chr7_3:75109557-75109576 Msa1124070:CDS 35.0%
ACAAGAAACTTGCCTTACAA+TGG + chr7_3:75109640-75109659 Msa1124070:CDS 35.0%
CGGATAAGAATGTTGACAAA+AGG + chr7_3:75109667-75109686 Msa1124070:CDS 35.0%
CAAAACTAGCCAAAAAAGCA+TGG - chr7_3:75109829-75109848 None:intergenic 35.0%
!!! CATGCTTTTTTGGCTAGTTT+TGG + chr7_3:75109827-75109846 Msa1124070:intron 35.0%
!! TTTTAATGGACGCTTAACTG+CGG + chr7_3:75109868-75109887 Msa1124070:intron 35.0%
CTTAACTGCGGAGTTATAAT+AGG + chr7_3:75109880-75109899 Msa1124070:intron 35.0%
! TATAGCCTTGATTTCCTCAA+GGG + chr7_3:75110206-75110225 Msa1124070:three_prime_UTR 35.0%
! GTTGACTAATCACTTGCTAA+CGG + chr7_3:75110243-75110262 Msa1124070:three_prime_UTR 35.0%
GGTTGTTGAGGTAAATACTT+AGG + chr7_3:75110264-75110283 Msa1124070:three_prime_UTR 35.0%
GCTTTGTGATAAAAGTGATG+GGG + chr7_3:75110338-75110357 Msa1124070:three_prime_UTR 35.0%
!! TAGCCCCATAAAGTTTTATG+CGG + chr7_3:75110393-75110412 Msa1124070:three_prime_UTR 35.0%
ACCACCGCATAAAACTTTAT+GGG - chr7_3:75110400-75110419 None:intergenic 35.0%
AACCACCGCATAAAACTTTA+TGG - chr7_3:75110401-75110420 None:intergenic 35.0%
ACAAATAGTGTAATGGTTGC+TGG - chr7_3:75110451-75110470 None:intergenic 35.0%
TTGCTTCACACTTAATACCA+TGG + chr7_3:75110495-75110514 Msa1124070:three_prime_UTR 35.0%
TTTAAAGATCAGCAAACGCA+AGG + chr7_3:75109557-75109576 Msa1124070:CDS 35.0%
ACAAGAAACTTGCCTTACAA+TGG + chr7_3:75109640-75109659 Msa1124070:CDS 35.0%
CGGATAAGAATGTTGACAAA+AGG + chr7_3:75109667-75109686 Msa1124070:CDS 35.0%
CAAAACTAGCCAAAAAAGCA+TGG - chr7_3:75109829-75109848 None:intergenic 35.0%
!!! CATGCTTTTTTGGCTAGTTT+TGG + chr7_3:75109827-75109846 Msa1124070:intron 35.0%
!! TTTTAATGGACGCTTAACTG+CGG + chr7_3:75109868-75109887 Msa1124070:intron 35.0%
CTTAACTGCGGAGTTATAAT+AGG + chr7_3:75109880-75109899 Msa1124070:intron 35.0%
! TATAGCCTTGATTTCCTCAA+GGG + chr7_3:75110206-75110225 Msa1124070:three_prime_UTR 35.0%
! GTTGACTAATCACTTGCTAA+CGG + chr7_3:75110243-75110262 Msa1124070:three_prime_UTR 35.0%
GGTTGTTGAGGTAAATACTT+AGG + chr7_3:75110264-75110283 Msa1124070:three_prime_UTR 35.0%
GCTTTGTGATAAAAGTGATG+GGG + chr7_3:75110338-75110357 Msa1124070:three_prime_UTR 35.0%
!! TAGCCCCATAAAGTTTTATG+CGG + chr7_3:75110393-75110412 Msa1124070:three_prime_UTR 35.0%
ACCACCGCATAAAACTTTAT+GGG - chr7_3:75110400-75110419 None:intergenic 35.0%
AACCACCGCATAAAACTTTA+TGG - chr7_3:75110401-75110420 None:intergenic 35.0%
ACAAATAGTGTAATGGTTGC+TGG - chr7_3:75110451-75110470 None:intergenic 35.0%
GACCTTGAAGAATCAGGAAT+GGG + chr7_3:75110013-75110032 Msa1124070:CDS 40.0%
! CTATAGCCTTGATTTCCTCA+AGG + chr7_3:75110205-75110224 Msa1124070:three_prime_UTR 40.0%
ATTATAGATGTGGTCCCTTG+AGG - chr7_3:75110223-75110242 None:intergenic 40.0%
TCTTGTCTTGCAAGCAACTT+GGG - chr7_3:75110295-75110314 None:intergenic 40.0%
! GTGATAAAAGTGATGGGGAT+AGG + chr7_3:75110343-75110362 Msa1124070:three_prime_UTR 40.0%
ATGGGGATAGGTGTTAGTTA+AGG + chr7_3:75110355-75110374 Msa1124070:three_prime_UTR 40.0%
CCACCGCATAAAACTTTATG+GGG - chr7_3:75110399-75110418 None:intergenic 40.0%
GACCTTGAAGAATCAGGAAT+GGG + chr7_3:75110013-75110032 Msa1124070:CDS 40.0%
! CTATAGCCTTGATTTCCTCA+AGG + chr7_3:75110205-75110224 Msa1124070:three_prime_UTR 40.0%
ATTATAGATGTGGTCCCTTG+AGG - chr7_3:75110223-75110242 None:intergenic 40.0%
TCTTGTCTTGCAAGCAACTT+GGG - chr7_3:75110295-75110314 None:intergenic 40.0%
! GTGATAAAAGTGATGGGGAT+AGG + chr7_3:75110343-75110362 Msa1124070:three_prime_UTR 40.0%
ATGGGGATAGGTGTTAGTTA+AGG + chr7_3:75110355-75110374 Msa1124070:three_prime_UTR 40.0%
CCACCGCATAAAACTTTATG+GGG - chr7_3:75110399-75110418 None:intergenic 40.0%
TGACAAAAGGGAAGAAGCAG+AGG + chr7_3:75109680-75109699 Msa1124070:CDS 45.0%
! GGGTCGTTGCATTGTGTTTT+AGG + chr7_3:75109946-75109965 Msa1124070:intron 45.0%
AAACGCACAAGATACGACCA+AGG + chr7_3:75109986-75110005 Msa1124070:CDS 45.0%
AACGCACAAGATACGACCAA+GGG + chr7_3:75109987-75110006 Msa1124070:CDS 45.0%
GGACCTTGAAGAATCAGGAA+TGG + chr7_3:75110012-75110031 Msa1124070:CDS 45.0%
CACCCATTCCTGATTCTTCA+AGG - chr7_3:75110018-75110037 None:intergenic 45.0%
CTTGAAGAATCAGGAATGGG+TGG + chr7_3:75110016-75110035 Msa1124070:CDS 45.0%
GGTGGAGGTTTCAATCCATT+CGG + chr7_3:75110046-75110065 Msa1124070:CDS 45.0%
! TCACTTGCTAACGGTTGTTG+AGG + chr7_3:75110252-75110271 Msa1124070:three_prime_UTR 45.0%
CTTGTCTTGCAAGCAACTTG+GGG - chr7_3:75110294-75110313 None:intergenic 45.0%
GTCTTGTCTTGCAAGCAACT+TGG - chr7_3:75110296-75110315 None:intergenic 45.0%
GGGATAGGTGTTAGTTAAGG+AGG + chr7_3:75110358-75110377 Msa1124070:three_prime_UTR 45.0%
!! CCCCATAAAGTTTTATGCGG+TGG + chr7_3:75110396-75110415 Msa1124070:three_prime_UTR 45.0%
! GCGGTGGTTGATACTTTGTA+AGG + chr7_3:75110412-75110431 Msa1124070:three_prime_UTR 45.0%
TGACAAAAGGGAAGAAGCAG+AGG + chr7_3:75109680-75109699 Msa1124070:CDS 45.0%
! GGGTCGTTGCATTGTGTTTT+AGG + chr7_3:75109946-75109965 Msa1124070:intron 45.0%
AAACGCACAAGATACGACCA+AGG + chr7_3:75109986-75110005 Msa1124070:CDS 45.0%
AACGCACAAGATACGACCAA+GGG + chr7_3:75109987-75110006 Msa1124070:CDS 45.0%
GGACCTTGAAGAATCAGGAA+TGG + chr7_3:75110012-75110031 Msa1124070:CDS 45.0%
CACCCATTCCTGATTCTTCA+AGG - chr7_3:75110018-75110037 None:intergenic 45.0%
CTTGAAGAATCAGGAATGGG+TGG + chr7_3:75110016-75110035 Msa1124070:CDS 45.0%
GGTGGAGGTTTCAATCCATT+CGG + chr7_3:75110046-75110065 Msa1124070:CDS 45.0%
! TCACTTGCTAACGGTTGTTG+AGG + chr7_3:75110252-75110271 Msa1124070:three_prime_UTR 45.0%
CTTGTCTTGCAAGCAACTTG+GGG - chr7_3:75110294-75110313 None:intergenic 45.0%
GTCTTGTCTTGCAAGCAACT+TGG - chr7_3:75110296-75110315 None:intergenic 45.0%
GGGATAGGTGTTAGTTAAGG+AGG + chr7_3:75110358-75110377 Msa1124070:three_prime_UTR 45.0%
!! CCCCATAAAGTTTTATGCGG+TGG + chr7_3:75110396-75110415 Msa1124070:three_prime_UTR 45.0%
! GCGGTGGTTGATACTTTGTA+AGG + chr7_3:75110412-75110431 Msa1124070:three_prime_UTR 45.0%
!!! AAATAATTTGTTTTTTTTAA+TGG + chr7_3:75109854-75109873 Msa1124070:intron 5.0%
!!! AAATAATTTGTTTTTTTTAA+TGG + chr7_3:75109854-75109873 Msa1124070:intron 5.0%
! TGCGCGTTTTATCTCAGCAG+CGG - chr7_3:75109619-75109638 None:intergenic 50.0%
ACTTGCCTTACAATGGCACC+CGG + chr7_3:75109647-75109666 Msa1124070:CDS 50.0%
!! CTTATCCGGGTGCCATTGTA+AGG - chr7_3:75109655-75109674 None:intergenic 50.0%
CGTATGCAGCAGCGATTTCT+CGG - chr7_3:75109713-75109732 None:intergenic 50.0%
AGAAATCGCTGCTGCATACG+AGG + chr7_3:75109713-75109732 Msa1124070:CDS 50.0%
ACGCACAAGATACGACCAAG+GGG + chr7_3:75109988-75110007 Msa1124070:CDS 50.0%
ATTCTTCAAGGTCCTCCCCT+TGG - chr7_3:75110006-75110025 None:intergenic 50.0%
GAAGAATCAGGAATGGGTGG+CGG + chr7_3:75110019-75110038 Msa1124070:CDS 50.0%
GGAGGTTTCAATCCATTCGG+TGG + chr7_3:75110049-75110068 Msa1124070:CDS 50.0%
! GGTTTCAATCCATTCGGTGG+TGG + chr7_3:75110052-75110071 Msa1124070:CDS 50.0%
! TTCAATCCATTCGGTGGTGG+TGG + chr7_3:75110055-75110074 Msa1124070:CDS 50.0%
!!! ACTTTTGATGGTGGCTTCCC+TGG + chr7_3:75110094-75110113 Msa1124070:CDS 50.0%
GTGGTCCCTTGAGGAAATCA+AGG - chr7_3:75110214-75110233 None:intergenic 50.0%
TCTTGCAAGCAACTTGGGGA+TGG - chr7_3:75110290-75110309 None:intergenic 50.0%
! TGCGCGTTTTATCTCAGCAG+CGG - chr7_3:75109619-75109638 None:intergenic 50.0%
ACTTGCCTTACAATGGCACC+CGG + chr7_3:75109647-75109666 Msa1124070:CDS 50.0%
!! CTTATCCGGGTGCCATTGTA+AGG - chr7_3:75109655-75109674 None:intergenic 50.0%
CGTATGCAGCAGCGATTTCT+CGG - chr7_3:75109713-75109732 None:intergenic 50.0%
AGAAATCGCTGCTGCATACG+AGG + chr7_3:75109713-75109732 Msa1124070:CDS 50.0%
ACGCACAAGATACGACCAAG+GGG + chr7_3:75109988-75110007 Msa1124070:CDS 50.0%
ATTCTTCAAGGTCCTCCCCT+TGG - chr7_3:75110006-75110025 None:intergenic 50.0%
GAAGAATCAGGAATGGGTGG+CGG + chr7_3:75110019-75110038 Msa1124070:CDS 50.0%
GGAGGTTTCAATCCATTCGG+TGG + chr7_3:75110049-75110068 Msa1124070:CDS 50.0%
! GGTTTCAATCCATTCGGTGG+TGG + chr7_3:75110052-75110071 Msa1124070:CDS 50.0%
! TTCAATCCATTCGGTGGTGG+TGG + chr7_3:75110055-75110074 Msa1124070:CDS 50.0%
!!! ACTTTTGATGGTGGCTTCCC+TGG + chr7_3:75110094-75110113 Msa1124070:CDS 50.0%
GTGGTCCCTTGAGGAAATCA+AGG - chr7_3:75110214-75110233 None:intergenic 50.0%
TCTTGCAAGCAACTTGGGGA+TGG - chr7_3:75110290-75110309 None:intergenic 50.0%
CACAAGATACGACCAAGGGG+AGG + chr7_3:75109991-75110010 Msa1124070:CDS 55.0%
GGGGAGGACCTTGAAGAATC+AGG + chr7_3:75110007-75110026 Msa1124070:CDS 55.0%
!! TTTGATGGTGGCTTCCCTGG+TGG + chr7_3:75110097-75110116 Msa1124070:CDS 55.0%
CACAAGATACGACCAAGGGG+AGG + chr7_3:75109991-75110010 Msa1124070:CDS 55.0%
GGGGAGGACCTTGAAGAATC+AGG + chr7_3:75110007-75110026 Msa1124070:CDS 55.0%
!! TTTGATGGTGGCTTCCCTGG+TGG + chr7_3:75110097-75110116 Msa1124070:CDS 55.0%
! GAATCAGGAATGGGTGGCGG+CGG + chr7_3:75110022-75110041 Msa1124070:CDS 60.0%
TGCTGTCCACCACCACCGAA+TGG - chr7_3:75110064-75110083 None:intergenic 60.0%
TTCCCTGGTGGAGGCTTTCC+CGG + chr7_3:75110109-75110128 Msa1124070:CDS 60.0%
! GAATCAGGAATGGGTGGCGG+CGG + chr7_3:75110022-75110041 Msa1124070:CDS 60.0%
TGCTGTCCACCACCACCGAA+TGG - chr7_3:75110064-75110083 None:intergenic 60.0%
TTCCCTGGTGGAGGCTTTCC+CGG + chr7_3:75110109-75110128 Msa1124070:CDS 60.0%
! GATGGTGGCTTCCCTGGTGG+AGG + chr7_3:75110100-75110119 Msa1124070:CDS 65.0%
CACCGGGAAAGCCTCCACCA+GGG - chr7_3:75110114-75110133 None:intergenic 65.0%
! GATGGTGGCTTCCCTGGTGG+AGG + chr7_3:75110100-75110119 Msa1124070:CDS 65.0%
CACCGGGAAAGCCTCCACCA+GGG - chr7_3:75110114-75110133 None:intergenic 65.0%
! TCAGGAATGGGTGGCGGCGG+CGG + chr7_3:75110025-75110044 Msa1124070:CDS 70.0%
CCACCGGGAAAGCCTCCACC+AGG - chr7_3:75110115-75110134 None:intergenic 70.0%
CCTGGTGGAGGCTTTCCCGG+TGG + chr7_3:75110112-75110131 Msa1124070:CDS 70.0%
GGTGGAGGCTTTCCCGGTGG+CGG + chr7_3:75110115-75110134 Msa1124070:CDS 70.0%
! TCAGGAATGGGTGGCGGCGG+CGG + chr7_3:75110025-75110044 Msa1124070:CDS 70.0%
CCACCGGGAAAGCCTCCACC+AGG - chr7_3:75110115-75110134 None:intergenic 70.0%
CCTGGTGGAGGCTTTCCCGG+TGG + chr7_3:75110112-75110131 Msa1124070:CDS 70.0%
GGTGGAGGCTTTCCCGGTGG+CGG + chr7_3:75110115-75110134 Msa1124070:CDS 70.0%
! GGAGGCTTTCCCGGTGGCGG+CGG + chr7_3:75110118-75110137 Msa1124070:CDS 75.0%
TAACCACCGCCGCCGCCACC+GGG - chr7_3:75110130-75110149 None:intergenic 75.0%
GTAACCACCGCCGCCGCCAC+CGG - chr7_3:75110131-75110150 None:intergenic 75.0%
! GGAGGCTTTCCCGGTGGCGG+CGG + chr7_3:75110118-75110137 Msa1124070:CDS 75.0%
TAACCACCGCCGCCGCCACC+GGG - chr7_3:75110130-75110149 None:intergenic 75.0%
GTAACCACCGCCGCCGCCAC+CGG - chr7_3:75110131-75110150 None:intergenic 75.0%
!! GGAATGGGTGGCGGCGGCGG+TGG + chr7_3:75110028-75110047 Msa1124070:CDS 80.0%
!! ATGGGTGGCGGCGGCGGTGG+AGG + chr7_3:75110031-75110050 Msa1124070:CDS 80.0%
!! GGCTTTCCCGGTGGCGGCGG+CGG + chr7_3:75110121-75110140 Msa1124070:CDS 80.0%
!! TTTCCCGGTGGCGGCGGCGG+TGG + chr7_3:75110124-75110143 Msa1124070:CDS 80.0%
!! GGAATGGGTGGCGGCGGCGG+TGG + chr7_3:75110028-75110047 Msa1124070:CDS 80.0%
!! ATGGGTGGCGGCGGCGGTGG+AGG + chr7_3:75110031-75110050 Msa1124070:CDS 80.0%
!! GGCTTTCCCGGTGGCGGCGG+CGG + chr7_3:75110121-75110140 Msa1124070:CDS 80.0%
!! TTTCCCGGTGGCGGCGGCGG+TGG + chr7_3:75110124-75110143 Msa1124070:CDS 80.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 75109512 75110516 75109512 ID=Msa1124070;Name=Msa1124070
chr7_3 mRNA 75109512 75110516 75109512 ID=Msa1124070-mRNA-1;Parent=Msa1124070;Name=Msa1124070-mRNA-1;_AED=0.11;_eAED=0.11;_QI=7|1|1|1|1|1|2|351|137
chr7_3 exon 75109512 75109734 75109512 ID=Msa1124070-mRNA-1:exon:20169;Parent=Msa1124070-mRNA-1
chr7_3 exon 75109968 75110516 75109968 ID=Msa1124070-mRNA-1:exon:20170;Parent=Msa1124070-mRNA-1
chr7_3 five_prime_UTR 75109512 75109518 75109512 ID=Msa1124070-mRNA-1:five_prime_utr;Parent=Msa1124070-mRNA-1
chr7_3 CDS 75109519 75109734 75109519 ID=Msa1124070-mRNA-1:cds;Parent=Msa1124070-mRNA-1
chr7_3 CDS 75109968 75110165 75109968 ID=Msa1124070-mRNA-1:cds;Parent=Msa1124070-mRNA-1
chr7_3 three_prime_UTR 75110166 75110516 75110166 ID=Msa1124070-mRNA-1:three_prime_utr;Parent=Msa1124070-mRNA-1
Gene Sequence

>Msa1124070

ATGAATATTCGTGAAGCATTAATGAGGGCTGAAAAAGCTTTAAAGATCAGCAAACGCAAGGATTATTACAAGATTTTGGAAATTTCAAAACATGCTTCCGCTGCTGAGATAAAACGCGCATACAAGAAACTTGCCTTACAATGGCACCCGGATAAGAATGTTGACAAAAGGGAAGAAGCAGAGGCTAAATTCCGAGAAATCGCTGCTGCATACGAGGTTCTAAGTGATGAAGACAAACGCACAAGATACGACCAAGGGGAGGACCTTGAAGAATCAGGAATGGGTGGCGGCGGCGGTGGAGGTTTCAATCCATTCGGTGGTGGTGGACAGCAATTTCACTTTACTTTTGATGGTGGCTTCCCTGGTGGAGGCTTTCCCGGTGGCGGCGGCGGTGGTTACGAATTTCATTTTTGA

Protein sequence

>Msa1124070

MNIREALMRAEKALKISKRKDYYKILEISKHASAAEIKRAYKKLALQWHPDKNVDKREEAEAKFREIAAAYEVLSDEDKRTRYDQGEDLEESGMGGGGGGGFNPFGGGGQQFHFTFDGGFPGGGFPGGGGGGYEFHF*