Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216290 | KEH37848.1 | 82.099 | 162 | 14 | 3 | 209 | 369 | 1 | 148 | 1.21e-80 | 254 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216290 | A0A072V942 | 82.099 | 162 | 14 | 3 | 209 | 369 | 1 | 148 | 5.79e-81 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048100 | Msa0216290 | 0.805226 | 1.478522e-49 | -8.615850e-47 |
| Msa0081930 | Msa0216290 | 0.803549 | 3.306485e-49 | -8.615850e-47 |
| Msa0153910 | Msa0216290 | 0.800194 | 1.615628e-48 | -8.615850e-47 |
| Msa0216290 | Msa0280090 | 0.812020 | 5.229287e-51 | -8.615850e-47 |
| Msa0216290 | Msa0339620 | 0.803559 | 3.289742e-49 | -8.615850e-47 |
| Msa0216290 | Msa0432300 | 0.810947 | 8.945371e-51 | -8.615850e-47 |
| Msa0216290 | Msa0435230 | 0.801674 | 8.053253e-49 | -8.615850e-47 |
| Msa0216290 | Msa0444130 | 0.816164 | 6.367415e-52 | -8.615850e-47 |
| Msa0216290 | Msa0512900 | 0.802094 | 6.605135e-49 | -8.615850e-47 |
| Msa0216290 | Msa0610430 | 0.824864 | 6.404741e-54 | -8.615850e-47 |
| Msa0216290 | Msa0673460 | 0.801794 | 7.610804e-49 | -8.615850e-47 |
| Msa0216290 | Msa0692360 | 0.832354 | 9.916939e-56 | -8.615850e-47 |
| Msa0216290 | Msa0716840 | 0.821043 | 4.978688e-53 | -8.615850e-47 |
| Msa0216290 | Msa0745790 | 0.802686 | 4.987596e-49 | -8.615850e-47 |
| Msa0216290 | Msa0766630 | 0.819410 | 1.178885e-52 | -8.615850e-47 |
| Msa0216290 | Msa0773840 | 0.806841 | 6.763691e-50 | -8.615850e-47 |
| Msa0216290 | Msa0802830 | 0.808069 | 3.712802e-50 | -8.615850e-47 |
| Msa0216290 | Msa0820850 | 0.812525 | 4.058155e-51 | -8.615850e-47 |
| Msa0216290 | Msa0861130 | 0.807696 | 4.456703e-50 | -8.615850e-47 |
| Msa0216290 | Msa0898380 | 0.808473 | 3.043787e-50 | -8.615850e-47 |
| Msa0216290 | Msa0954910 | 0.820423 | 6.913500e-53 | -8.615850e-47 |
| Msa0216290 | Msa1014540 | 0.832382 | 9.759070e-56 | -8.615850e-47 |
| Msa0216290 | Msa1082500 | 0.802867 | 4.575526e-49 | -8.615850e-47 |
| Msa0216290 | Msa1186950 | -0.806531 | 7.860972e-50 | -8.615850e-47 |
| Msa0216290 | Msa1228590 | 0.809465 | 1.866938e-50 | -8.615850e-47 |
| Msa0216290 | Msa1249490 | 0.825399 | 4.787855e-54 | -8.615850e-47 |
| Msa0216290 | Msa1250890 | 0.806684 | 7.300806e-50 | -8.615850e-47 |
| Msa0216290 | Msa1273920 | 0.811797 | 5.850322e-51 | -8.615850e-47 |
| Msa0216290 | Msa1284680 | 0.802674 | 5.015482e-49 | -8.615850e-47 |
| Msa0216290 | Msa1373030 | 0.837018 | 6.655385e-57 | -8.615850e-47 |
| Msa0216290 | Msa1419960 | 0.819381 | 1.196690e-52 | -8.615850e-47 |
| Msa0216290 | Msa1455490 | 0.800168 | 1.635899e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216290 | MtrunA17_Chr7g0226311 | 51.200 | 125 | 61 | 0 | 56 | 180 | 1 | 125 | 6.73e-38 | 139 |
| Msa0216290 | MtrunA17_Chr8g0360541 | 61.616 | 99 | 37 | 1 | 219 | 317 | 12 | 109 | 6.40e-33 | 119 |
| Msa0216290 | MtrunA17_Chr6g0477141 | 45.370 | 108 | 58 | 1 | 63 | 170 | 139 | 245 | 2.36e-20 | 92.4 |
| Msa0216290 | MtrunA17_Chr6g0478531 | 38.525 | 122 | 74 | 1 | 62 | 183 | 36 | 156 | 1.36e-19 | 89.4 |
| Msa0216290 | MtrunA17_Chr2g0321401 | 36.975 | 119 | 72 | 2 | 64 | 180 | 65 | 182 | 1.30e-16 | 79.0 |
| Msa0216290 | MtrunA17_Chr1g0190171 | 36.975 | 119 | 72 | 2 | 64 | 180 | 66 | 183 | 3.72e-16 | 79.3 |
| Msa0216290 | MtrunA17_Chr1g0172731 | 36.975 | 119 | 72 | 2 | 64 | 180 | 66 | 183 | 4.27e-16 | 79.0 |
| Msa0216290 | MtrunA17_Chr1g0207391 | 37.391 | 115 | 71 | 1 | 68 | 182 | 92 | 205 | 5.06e-16 | 79.0 |
| Msa0216290 | MtrunA17_Chr8g0334561 | 36.975 | 119 | 72 | 2 | 64 | 180 | 66 | 183 | 2.78e-15 | 75.1 |
| Msa0216290 | MtrunA17_Chr2g0285471 | 38.095 | 105 | 62 | 2 | 68 | 170 | 1 | 104 | 7.83e-15 | 72.4 |
| Msa0216290 | MtrunA17_Chr8g0391981 | 35.135 | 111 | 56 | 1 | 69 | 179 | 82 | 176 | 7.88e-15 | 75.5 |
| Msa0216290 | MtrunA17_Chr7g0267201 | 33.058 | 121 | 72 | 1 | 71 | 182 | 1 | 121 | 7.29e-13 | 66.6 |
| Msa0216290 | MtrunA17_Chr1g0182341 | 34.483 | 116 | 67 | 1 | 64 | 170 | 60 | 175 | 7.53e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0216290 | AT5G41980.1 | 38.525 | 122 | 69 | 3 | 62 | 183 | 39 | 154 | 5.62e-18 | 84.7 |
| Msa0216290 | AT1G43722.1 | 35.238 | 105 | 65 | 1 | 68 | 169 | 69 | 173 | 5.02e-11 | 63.5 |
Find 63 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATTCTAGAATGTATT+TGG | 0.132738 | 2_1:+62038029 | None:intergenic |
| TTGACACAATTTCGCATATT+TGG | 0.151192 | 2_1:+62038120 | None:intergenic |
| TGAAACCAATGAAGTTATTT+TGG | 0.159437 | 2_1:-62036951 | Msa0216290:CDS |
| GTGCTAATGGTGGAGATATT+TGG | 0.190376 | 2_1:-62036712 | Msa0216290:CDS |
| TGGGCTGAATTAGTCGAAAT+TGG | 0.264996 | 2_1:-62036692 | Msa0216290:CDS |
| ATATATTACCATTAATAAAA+AGG | 0.271929 | 2_1:+62036542 | None:intergenic |
| GTGTCTCCATTCAGCAGCTT+CGG | 0.298750 | 2_1:+62037126 | None:intergenic |
| GAGCTAATGAAACATATTAT+AGG | 0.312558 | 2_1:-62037983 | Msa0216290:CDS |
| TGTCTCCATTCAGCAGCTTC+GGG | 0.335174 | 2_1:+62037127 | None:intergenic |
| TTTCTATTTACCTTAAAATA+CGG | 0.338477 | 2_1:+62037644 | None:intergenic |
| TTTCAAAGCATGTATCTTCA+TGG | 0.339748 | 2_1:+62037041 | None:intergenic |
| ACAAGATACATGTATGCTTT+AGG | 0.346109 | 2_1:+62036650 | None:intergenic |
| CAAATGATCTATTTCCTCTA+TGG | 0.351245 | 2_1:+62036976 | None:intergenic |
| GCAAAGTTTATTTACATAGT+AGG | 0.351556 | 2_1:-62037839 | Msa0216290:CDS |
| CACAAGTTTAAGAAAGCTTT+GGG | 0.352886 | 2_1:+62037926 | None:intergenic |
| TGTGATTCTAGAATGTATTT+GGG | 0.352889 | 2_1:+62038030 | None:intergenic |
| TCCACCGCGATCTCGTAATA+AGG | 0.354265 | 2_1:+62037901 | None:intergenic |
| CCTCTCCAAAATAACTTCAT+TGG | 0.354565 | 2_1:+62036946 | None:intergenic |
| AATTTATAATAAAACGGTAT+AGG | 0.359247 | 2_1:+62037100 | None:intergenic |
| CATAGAGGAAATAGATCATT+TGG | 0.369976 | 2_1:-62036975 | Msa0216290:CDS |
| GCACAAGTTTAAGAAAGCTT+TGG | 0.379505 | 2_1:+62037925 | None:intergenic |
| ATTTCCTTGCGGTTATCAAT+TGG | 0.382990 | 2_1:+62036590 | None:intergenic |
| CGGAGATACTTAACAACAAT+AGG | 0.410694 | 2_1:-62037673 | Msa0216290:CDS |
| TGCTAATGGTGGAGATATTT+GGG | 0.420787 | 2_1:-62036711 | Msa0216290:CDS |
| TTTGGAGAAGATCGAGCAAC+AGG | 0.421079 | 2_1:-62037067 | Msa0216290:CDS |
| TATGCTTTAGGCAAGGAAGC+TGG | 0.428835 | 2_1:+62036662 | None:intergenic |
| TTCTAGAATCACAGAGCATA+GGG | 0.441681 | 2_1:-62038020 | Msa0216290:CDS |
| TTGGCTAATTTATAATAAAA+CGG | 0.449294 | 2_1:+62037094 | None:intergenic |
| TCTTGAGAAGTAGAAATAGA+AGG | 0.460904 | 2_1:+62036875 | None:intergenic |
| CTTTGAAATGAGAGCAAGAA+AGG | 0.466525 | 2_1:-62037026 | Msa0216290:CDS |
| ATTCCAACATTTCTCCGAAA+AGG | 0.472932 | 2_1:-62036898 | Msa0216290:CDS |
| AAACAGAGTAAGAGTGCTAA+TGG | 0.473053 | 2_1:-62036725 | Msa0216290:CDS |
| TTCTATTTACCTTAAAATAC+GGG | 0.474287 | 2_1:+62037645 | None:intergenic |
| TTTGGCTCTTATGTCTTCGT+TGG | 0.478582 | 2_1:+62038138 | None:intergenic |
| CAAGAAAGGCTGCAAATAGC+AGG | 0.488896 | 2_1:-62037012 | Msa0216290:CDS |
| CTCAAGATGTGTCATCATCT+AGG | 0.491937 | 2_1:-62036859 | Msa0216290:CDS |
| TAAAATGAGCTCAGAGGAGT+TGG | 0.496724 | 2_1:-62036750 | Msa0216290:CDS |
| GACTTTAAAGACAATGGTTG+AGG | 0.496784 | 2_1:-62036777 | Msa0216290:CDS |
| CTATTGTTGTTAAGTATCTC+CGG | 0.506373 | 2_1:+62037674 | None:intergenic |
| AGATGCTTTGATAGAGGTGG+AGG | 0.526373 | 2_1:-62037735 | Msa0216290:CDS |
| TTCTAAGACTTTAAAGACAA+TGG | 0.527887 | 2_1:-62036783 | Msa0216290:CDS |
| TACACGAAGGGCGTCTATTG+AGG | 0.529945 | 2_1:-62037870 | Msa0216290:CDS |
| GGAGGAACTTGTGTACCATC+AGG | 0.541910 | 2_1:+62037695 | None:intergenic |
| AGTACTAGATGCTTTGATAG+AGG | 0.550849 | 2_1:-62037741 | Msa0216290:CDS |
| ATGCTTTAGGCAAGGAAGCT+GGG | 0.553375 | 2_1:+62036663 | None:intergenic |
| ACTAGATGCTTTGATAGAGG+TGG | 0.554426 | 2_1:-62037738 | Msa0216290:CDS |
| ATTCTAGAATCACAGAGCAT+AGG | 0.567693 | 2_1:-62038021 | Msa0216290:CDS |
| TGATGGTACACAAGTTCCTC+CGG | 0.574268 | 2_1:-62037693 | Msa0216290:CDS |
| GAGTCATGGTGCTACCATAG+AGG | 0.605019 | 2_1:-62036990 | Msa0216290:CDS |
| GCTGCAAATAGCAGGAGTCA+TGG | 0.606627 | 2_1:-62037004 | Msa0216290:CDS |
| ATGCTTTGATAGAGGTGGAG+GGG | 0.606730 | 2_1:-62037733 | Msa0216290:CDS |
| ATATTTCTGAAACAACCTGA+TGG | 0.629332 | 2_1:-62037710 | Msa0216290:CDS |
| GATGCTTTGATAGAGGTGGA+GGG | 0.640286 | 2_1:-62037734 | Msa0216290:CDS |
| CAGAGTAAGAGTGCTAATGG+TGG | 0.647513 | 2_1:-62036722 | Msa0216290:CDS |
| AATTCCAATTGATAACCGCA+AGG | 0.651275 | 2_1:-62036594 | Msa0216290:CDS |
| ATACATGTATGCTTTAGGCA+AGG | 0.652830 | 2_1:+62036655 | None:intergenic |
| TGGACTTACACATACACGAA+GGG | 0.678368 | 2_1:-62037882 | Msa0216290:CDS |
| TGCACCTTATTACGAGATCG+CGG | 0.681624 | 2_1:-62037905 | Msa0216290:CDS |
| TTGTTGTTAAGTATCTCCGG+AGG | 0.687222 | 2_1:+62037677 | None:intergenic |
| TGAGATGTAACATTTCCTTG+CGG | 0.688770 | 2_1:+62036579 | None:intergenic |
| GGTGTTTAAAATGAGCTCAG+AGG | 0.692166 | 2_1:-62036756 | Msa0216290:CDS |
| GTGGACTTACACATACACGA+AGG | 0.701442 | 2_1:-62037883 | Msa0216290:CDS |
| ACCTTATTACGAGATCGCGG+TGG | 0.758037 | 2_1:-62037902 | Msa0216290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAAAATATTATT+TGG | - | chr2_1:62037431-62037450 | Msa0216290:intron | 10.0% |
| !! | TTTATAGGAAAATATTATTT+GGG | - | chr2_1:62037432-62037451 | Msa0216290:intron | 10.0% |
| !!! | TTTTATAGGAAAATATTATT+TGG | - | chr2_1:62037431-62037450 | Msa0216290:intron | 10.0% |
| !! | TTTATAGGAAAATATTATTT+GGG | - | chr2_1:62037432-62037451 | Msa0216290:intron | 10.0% |
| !! | TTTCTATTTACCTTAAAATA+CGG | + | chr2_1:62037054-62037073 | None:intergenic | 15.0% |
| !!! | ATAAACTCGTTATTTTTTAT+AGG | - | chr2_1:62037417-62037436 | Msa0216290:intron | 15.0% |
| !! | AATTTATAATAAAACGGTAT+AGG | + | chr2_1:62037598-62037617 | None:intergenic | 15.0% |
| !! | TTGGCTAATTTATAATAAAA+CGG | + | chr2_1:62037604-62037623 | None:intergenic | 15.0% |
| !! | TTTCTATTTACCTTAAAATA+CGG | + | chr2_1:62037054-62037073 | None:intergenic | 15.0% |
| !!! | ATAAACTCGTTATTTTTTAT+AGG | - | chr2_1:62037417-62037436 | Msa0216290:intron | 15.0% |
| !! | AATTTATAATAAAACGGTAT+AGG | + | chr2_1:62037598-62037617 | None:intergenic | 15.0% |
| !! | TTGGCTAATTTATAATAAAA+CGG | + | chr2_1:62037604-62037623 | None:intergenic | 15.0% |
| !! | TTCTATTTACCTTAAAATAC+GGG | + | chr2_1:62037053-62037072 | None:intergenic | 20.0% |
| !! | TAATATGTTAATTGAATGTC+AGG | - | chr2_1:62037116-62037135 | Msa0216290:CDS | 20.0% |
| !!! | TTCTTTTTTTTTTTACCTTG+TGG | + | chr2_1:62037358-62037377 | None:intergenic | 20.0% |
| !! | AAATAACGAGTTTATTAGTT+TGG | + | chr2_1:62037412-62037431 | None:intergenic | 20.0% |
| !!! | AGGTAGTATTTACTTTTAAT+GGG | - | chr2_1:62037467-62037486 | Msa0216290:intron | 20.0% |
| !!! | TATAAATTAGCCAAACTTTT+TGG | - | chr2_1:62037610-62037629 | Msa0216290:intron | 20.0% |
| !! | TTCTATTTACCTTAAAATAC+GGG | + | chr2_1:62037053-62037072 | None:intergenic | 20.0% |
| !! | TAATATGTTAATTGAATGTC+AGG | - | chr2_1:62037116-62037135 | Msa0216290:CDS | 20.0% |
| !!! | TTCTTTTTTTTTTTACCTTG+TGG | + | chr2_1:62037358-62037377 | None:intergenic | 20.0% |
| !! | AAATAACGAGTTTATTAGTT+TGG | + | chr2_1:62037412-62037431 | None:intergenic | 20.0% |
| !!! | AGGTAGTATTTACTTTTAAT+GGG | - | chr2_1:62037467-62037486 | Msa0216290:intron | 20.0% |
| !!! | TATAAATTAGCCAAACTTTT+TGG | - | chr2_1:62037610-62037629 | Msa0216290:intron | 20.0% |
| !!! | TGTGATTCTAGAATGTATTT+GGG | + | chr2_1:62036668-62036687 | None:intergenic | 25.0% |
| ! | GAGCTAATGAAACATATTAT+AGG | - | chr2_1:62036712-62036731 | Msa0216290:CDS | 25.0% |
| ! | GCAAAGTTTATTTACATAGT+AGG | - | chr2_1:62036856-62036875 | Msa0216290:CDS | 25.0% |
| !!! | GAGGTAGTATTTACTTTTAA+TGG | - | chr2_1:62037466-62037485 | Msa0216290:intron | 25.0% |
| !! | TGAAACCAATGAAGTTATTT+TGG | - | chr2_1:62037744-62037763 | Msa0216290:CDS | 25.0% |
| !!! | TTCTAAGACTTTAAAGACAA+TGG | - | chr2_1:62037912-62037931 | Msa0216290:CDS | 25.0% |
| !!! | TGTGATTCTAGAATGTATTT+GGG | + | chr2_1:62036668-62036687 | None:intergenic | 25.0% |
| ! | GAGCTAATGAAACATATTAT+AGG | - | chr2_1:62036712-62036731 | Msa0216290:CDS | 25.0% |
| ! | GCAAAGTTTATTTACATAGT+AGG | - | chr2_1:62036856-62036875 | Msa0216290:CDS | 25.0% |
| !!! | GAGGTAGTATTTACTTTTAA+TGG | - | chr2_1:62037466-62037485 | Msa0216290:intron | 25.0% |
| !! | TGAAACCAATGAAGTTATTT+TGG | - | chr2_1:62037744-62037763 | Msa0216290:CDS | 25.0% |
| !!! | TTCTAAGACTTTAAAGACAA+TGG | - | chr2_1:62037912-62037931 | Msa0216290:CDS | 25.0% |
| TTGACACAATTTCGCATATT+TGG | + | chr2_1:62036578-62036597 | None:intergenic | 30.0% | |
| !! | CTGTGATTCTAGAATGTATT+TGG | + | chr2_1:62036669-62036688 | None:intergenic | 30.0% |
| CACAAGTTTAAGAAAGCTTT+GGG | + | chr2_1:62036772-62036791 | None:intergenic | 30.0% | |
| !! | ATATTTCTGAAACAACCTGA+TGG | - | chr2_1:62036985-62037004 | Msa0216290:CDS | 30.0% |
| ! | CTATTGTTGTTAAGTATCTC+CGG | + | chr2_1:62037024-62037043 | None:intergenic | 30.0% |
| ATTGAATGTCAGGATTGTAT+TGG | - | chr2_1:62037126-62037145 | Msa0216290:CDS | 30.0% | |
| GACTTGAAATTTACATGTCT+TGG | - | chr2_1:62037258-62037277 | Msa0216290:intron | 30.0% | |
| TGAAATTTACATGTCTTGGT+TGG | - | chr2_1:62037262-62037281 | Msa0216290:intron | 30.0% | |
| !! | ACTCTTAACTATTCTAGAGT+CGG | + | chr2_1:62037305-62037324 | None:intergenic | 30.0% |
| TCTAGATACTTGTACAATTC+TGG | + | chr2_1:62037385-62037404 | None:intergenic | 30.0% | |
| ! | AGGAAAATATTATTTGGGAC+AGG | - | chr2_1:62037437-62037456 | Msa0216290:intron | 30.0% |
| TTTCAAAGCATGTATCTTCA+TGG | + | chr2_1:62037657-62037676 | None:intergenic | 30.0% | |
| CAAATGATCTATTTCCTCTA+TGG | + | chr2_1:62037722-62037741 | None:intergenic | 30.0% | |
| CATAGAGGAAATAGATCATT+TGG | - | chr2_1:62037720-62037739 | Msa0216290:CDS | 30.0% | |
| TCTTGAGAAGTAGAAATAGA+AGG | + | chr2_1:62037823-62037842 | None:intergenic | 30.0% | |
| ACAAGATACATGTATGCTTT+AGG | + | chr2_1:62038048-62038067 | None:intergenic | 30.0% | |
| ! | GATGCATTGAAAGCTTTTAA+TGG | - | chr2_1:62038078-62038097 | Msa0216290:CDS | 30.0% |
| TTGACACAATTTCGCATATT+TGG | + | chr2_1:62036578-62036597 | None:intergenic | 30.0% | |
| !! | CTGTGATTCTAGAATGTATT+TGG | + | chr2_1:62036669-62036688 | None:intergenic | 30.0% |
| CACAAGTTTAAGAAAGCTTT+GGG | + | chr2_1:62036772-62036791 | None:intergenic | 30.0% | |
| !! | ATATTTCTGAAACAACCTGA+TGG | - | chr2_1:62036985-62037004 | Msa0216290:CDS | 30.0% |
| ! | CTATTGTTGTTAAGTATCTC+CGG | + | chr2_1:62037024-62037043 | None:intergenic | 30.0% |
| ATTGAATGTCAGGATTGTAT+TGG | - | chr2_1:62037126-62037145 | Msa0216290:CDS | 30.0% | |
| GACTTGAAATTTACATGTCT+TGG | - | chr2_1:62037258-62037277 | Msa0216290:intron | 30.0% | |
| TGAAATTTACATGTCTTGGT+TGG | - | chr2_1:62037262-62037281 | Msa0216290:intron | 30.0% | |
| !! | ACTCTTAACTATTCTAGAGT+CGG | + | chr2_1:62037305-62037324 | None:intergenic | 30.0% |
| TCTAGATACTTGTACAATTC+TGG | + | chr2_1:62037385-62037404 | None:intergenic | 30.0% | |
| ! | AGGAAAATATTATTTGGGAC+AGG | - | chr2_1:62037437-62037456 | Msa0216290:intron | 30.0% |
| TTTCAAAGCATGTATCTTCA+TGG | + | chr2_1:62037657-62037676 | None:intergenic | 30.0% | |
| CAAATGATCTATTTCCTCTA+TGG | + | chr2_1:62037722-62037741 | None:intergenic | 30.0% | |
| CATAGAGGAAATAGATCATT+TGG | - | chr2_1:62037720-62037739 | Msa0216290:CDS | 30.0% | |
| TCTTGAGAAGTAGAAATAGA+AGG | + | chr2_1:62037823-62037842 | None:intergenic | 30.0% | |
| ACAAGATACATGTATGCTTT+AGG | + | chr2_1:62038048-62038067 | None:intergenic | 30.0% | |
| ! | GATGCATTGAAAGCTTTTAA+TGG | - | chr2_1:62038078-62038097 | Msa0216290:CDS | 30.0% |
| !! | ATTCTAGAATCACAGAGCAT+AGG | - | chr2_1:62036674-62036693 | Msa0216290:CDS | 35.0% |
| !! | TTCTAGAATCACAGAGCATA+GGG | - | chr2_1:62036675-62036694 | Msa0216290:CDS | 35.0% |
| GCACAAGTTTAAGAAAGCTT+TGG | + | chr2_1:62036773-62036792 | None:intergenic | 35.0% | |
| AGTACTAGATGCTTTGATAG+AGG | - | chr2_1:62036954-62036973 | Msa0216290:CDS | 35.0% | |
| CGGAGATACTTAACAACAAT+AGG | - | chr2_1:62037022-62037041 | Msa0216290:CDS | 35.0% | |
| ! | TAGGTTCTACCCGTATTTTA+AGG | - | chr2_1:62037041-62037060 | Msa0216290:CDS | 35.0% |
| ! | TCTTTTCTACCACGATATCT+AGG | + | chr2_1:62037201-62037220 | None:intergenic | 35.0% |
| TTACCCAACACAAAATGTCT+TGG | - | chr2_1:62037221-62037240 | Msa0216290:intron | 35.0% | |
| ATTTACATGTCTTGGTTGGA+TGG | - | chr2_1:62037266-62037285 | Msa0216290:intron | 35.0% | |
| TTTACATGTCTTGGTTGGAT+GGG | - | chr2_1:62037267-62037286 | Msa0216290:intron | 35.0% | |
| TATCCTCTTAAAGTTCCACA+AGG | - | chr2_1:62037340-62037359 | Msa0216290:intron | 35.0% | |
| TTACCTTGTGGAACTTTAAG+AGG | + | chr2_1:62037346-62037365 | None:intergenic | 35.0% | |
| TCGATCTTCTCCAAAAAGTT+TGG | + | chr2_1:62037623-62037642 | None:intergenic | 35.0% | |
| !! | CTTTGAAATGAGAGCAAGAA+AGG | - | chr2_1:62037669-62037688 | Msa0216290:CDS | 35.0% |
| CCTCTCCAAAATAACTTCAT+TGG | + | chr2_1:62037752-62037771 | None:intergenic | 35.0% | |
| !!! | CCAATGAAGTTATTTTGGAG+AGG | - | chr2_1:62037749-62037768 | Msa0216290:CDS | 35.0% |
| ATTCCAACATTTCTCCGAAA+AGG | - | chr2_1:62037797-62037816 | Msa0216290:CDS | 35.0% | |
| ! | GTAGAAATAGAAGGCCTTTT+CGG | + | chr2_1:62037814-62037833 | None:intergenic | 35.0% |
| GACTAAGAAACGAGCAAAAA+AGG | - | chr2_1:62037858-62037877 | Msa0216290:CDS | 35.0% | |
| ! | GACTTTAAAGACAATGGTTG+AGG | - | chr2_1:62037918-62037937 | Msa0216290:CDS | 35.0% |
| !! | AAACAGAGTAAGAGTGCTAA+TGG | - | chr2_1:62037970-62037989 | Msa0216290:CDS | 35.0% |
| ! | TGCTAATGGTGGAGATATTT+GGG | - | chr2_1:62037984-62038003 | Msa0216290:CDS | 35.0% |
| ! | ATACATGTATGCTTTAGGCA+AGG | + | chr2_1:62038043-62038062 | None:intergenic | 35.0% |
| ! | AATTCCAATTGATAACCGCA+AGG | - | chr2_1:62038101-62038120 | Msa0216290:CDS | 35.0% |
| ATTTCCTTGCGGTTATCAAT+TGG | + | chr2_1:62038108-62038127 | None:intergenic | 35.0% | |
| TGAGATGTAACATTTCCTTG+CGG | + | chr2_1:62038119-62038138 | None:intergenic | 35.0% | |
| !! | ATTCTAGAATCACAGAGCAT+AGG | - | chr2_1:62036674-62036693 | Msa0216290:CDS | 35.0% |
| !! | TTCTAGAATCACAGAGCATA+GGG | - | chr2_1:62036675-62036694 | Msa0216290:CDS | 35.0% |
| GCACAAGTTTAAGAAAGCTT+TGG | + | chr2_1:62036773-62036792 | None:intergenic | 35.0% | |
| AGTACTAGATGCTTTGATAG+AGG | - | chr2_1:62036954-62036973 | Msa0216290:CDS | 35.0% | |
| CGGAGATACTTAACAACAAT+AGG | - | chr2_1:62037022-62037041 | Msa0216290:CDS | 35.0% | |
| ! | TAGGTTCTACCCGTATTTTA+AGG | - | chr2_1:62037041-62037060 | Msa0216290:CDS | 35.0% |
| ! | TCTTTTCTACCACGATATCT+AGG | + | chr2_1:62037201-62037220 | None:intergenic | 35.0% |
| TTACCCAACACAAAATGTCT+TGG | - | chr2_1:62037221-62037240 | Msa0216290:intron | 35.0% | |
| ATTTACATGTCTTGGTTGGA+TGG | - | chr2_1:62037266-62037285 | Msa0216290:intron | 35.0% | |
| TTTACATGTCTTGGTTGGAT+GGG | - | chr2_1:62037267-62037286 | Msa0216290:intron | 35.0% | |
| TATCCTCTTAAAGTTCCACA+AGG | - | chr2_1:62037340-62037359 | Msa0216290:intron | 35.0% | |
| TTACCTTGTGGAACTTTAAG+AGG | + | chr2_1:62037346-62037365 | None:intergenic | 35.0% | |
| TCGATCTTCTCCAAAAAGTT+TGG | + | chr2_1:62037623-62037642 | None:intergenic | 35.0% | |
| !! | CTTTGAAATGAGAGCAAGAA+AGG | - | chr2_1:62037669-62037688 | Msa0216290:CDS | 35.0% |
| CCTCTCCAAAATAACTTCAT+TGG | + | chr2_1:62037752-62037771 | None:intergenic | 35.0% | |
| !!! | CCAATGAAGTTATTTTGGAG+AGG | - | chr2_1:62037749-62037768 | Msa0216290:CDS | 35.0% |
| ATTCCAACATTTCTCCGAAA+AGG | - | chr2_1:62037797-62037816 | Msa0216290:CDS | 35.0% | |
| ! | GTAGAAATAGAAGGCCTTTT+CGG | + | chr2_1:62037814-62037833 | None:intergenic | 35.0% |
| GACTAAGAAACGAGCAAAAA+AGG | - | chr2_1:62037858-62037877 | Msa0216290:CDS | 35.0% | |
| ! | GACTTTAAAGACAATGGTTG+AGG | - | chr2_1:62037918-62037937 | Msa0216290:CDS | 35.0% |
| !! | AAACAGAGTAAGAGTGCTAA+TGG | - | chr2_1:62037970-62037989 | Msa0216290:CDS | 35.0% |
| ! | TGCTAATGGTGGAGATATTT+GGG | - | chr2_1:62037984-62038003 | Msa0216290:CDS | 35.0% |
| ! | ATACATGTATGCTTTAGGCA+AGG | + | chr2_1:62038043-62038062 | None:intergenic | 35.0% |
| ! | AATTCCAATTGATAACCGCA+AGG | - | chr2_1:62038101-62038120 | Msa0216290:CDS | 35.0% |
| ATTTCCTTGCGGTTATCAAT+TGG | + | chr2_1:62038108-62038127 | None:intergenic | 35.0% | |
| TGAGATGTAACATTTCCTTG+CGG | + | chr2_1:62038119-62038138 | None:intergenic | 35.0% | |
| !! | TTTGGCTCTTATGTCTTCGT+TGG | + | chr2_1:62036560-62036579 | None:intergenic | 40.0% |
| TGGACTTACACATACACGAA+GGG | - | chr2_1:62036813-62036832 | Msa0216290:CDS | 40.0% | |
| ACTAGATGCTTTGATAGAGG+TGG | - | chr2_1:62036957-62036976 | Msa0216290:CDS | 40.0% | |
| ! | TTGTTGTTAAGTATCTCCGG+AGG | + | chr2_1:62037021-62037040 | None:intergenic | 40.0% |
| ! | CAGCCAAGACATTTTGTGTT+GGG | + | chr2_1:62037227-62037246 | None:intergenic | 40.0% |
| ! | TATTTGGGACAGGCTAATTG+AGG | - | chr2_1:62037447-62037466 | Msa0216290:intron | 40.0% |
| CTCAAGATGTGTCATCATCT+AGG | - | chr2_1:62037836-62037855 | Msa0216290:CDS | 40.0% | |
| ! | GGTGTTTAAAATGAGCTCAG+AGG | - | chr2_1:62037939-62037958 | Msa0216290:CDS | 40.0% |
| TAAAATGAGCTCAGAGGAGT+TGG | - | chr2_1:62037945-62037964 | Msa0216290:CDS | 40.0% | |
| ! | GTGCTAATGGTGGAGATATT+TGG | - | chr2_1:62037983-62038002 | Msa0216290:CDS | 40.0% |
| TGGGCTGAATTAGTCGAAAT+TGG | - | chr2_1:62038003-62038022 | Msa0216290:CDS | 40.0% | |
| !! | TTTGGCTCTTATGTCTTCGT+TGG | + | chr2_1:62036560-62036579 | None:intergenic | 40.0% |
| TGGACTTACACATACACGAA+GGG | - | chr2_1:62036813-62036832 | Msa0216290:CDS | 40.0% | |
| ACTAGATGCTTTGATAGAGG+TGG | - | chr2_1:62036957-62036976 | Msa0216290:CDS | 40.0% | |
| ! | TTGTTGTTAAGTATCTCCGG+AGG | + | chr2_1:62037021-62037040 | None:intergenic | 40.0% |
| ! | CAGCCAAGACATTTTGTGTT+GGG | + | chr2_1:62037227-62037246 | None:intergenic | 40.0% |
| ! | TATTTGGGACAGGCTAATTG+AGG | - | chr2_1:62037447-62037466 | Msa0216290:intron | 40.0% |
| CTCAAGATGTGTCATCATCT+AGG | - | chr2_1:62037836-62037855 | Msa0216290:CDS | 40.0% | |
| ! | GGTGTTTAAAATGAGCTCAG+AGG | - | chr2_1:62037939-62037958 | Msa0216290:CDS | 40.0% |
| TAAAATGAGCTCAGAGGAGT+TGG | - | chr2_1:62037945-62037964 | Msa0216290:CDS | 40.0% | |
| ! | GTGCTAATGGTGGAGATATT+TGG | - | chr2_1:62037983-62038002 | Msa0216290:CDS | 40.0% |
| TGGGCTGAATTAGTCGAAAT+TGG | - | chr2_1:62038003-62038022 | Msa0216290:CDS | 40.0% | |
| TGCACCTTATTACGAGATCG+CGG | - | chr2_1:62036790-62036809 | Msa0216290:CDS | 45.0% | |
| GTGGACTTACACATACACGA+AGG | - | chr2_1:62036812-62036831 | Msa0216290:CDS | 45.0% | |
| AGATGCTTTGATAGAGGTGG+AGG | - | chr2_1:62036960-62036979 | Msa0216290:CDS | 45.0% | |
| GATGCTTTGATAGAGGTGGA+GGG | - | chr2_1:62036961-62036980 | Msa0216290:CDS | 45.0% | |
| ATGCTTTGATAGAGGTGGAG+GGG | - | chr2_1:62036962-62036981 | Msa0216290:CDS | 45.0% | |
| TGATGGTACACAAGTTCCTC+CGG | - | chr2_1:62037002-62037021 | Msa0216290:CDS | 45.0% | |
| TATCTAGGTGCAAGATGTGC+TGG | + | chr2_1:62037186-62037205 | None:intergenic | 45.0% | |
| CATCTTGCACCTAGATATCG+TGG | - | chr2_1:62037189-62037208 | Msa0216290:intron | 45.0% | |
| ! | GCAGCCAAGACATTTTGTGT+TGG | + | chr2_1:62037228-62037247 | None:intergenic | 45.0% |
| AAAAACCCGAAGCTGCTGAA+TGG | - | chr2_1:62037563-62037582 | Msa0216290:intron | 45.0% | |
| TTTGGAGAAGATCGAGCAAC+AGG | - | chr2_1:62037628-62037647 | Msa0216290:intron | 45.0% | |
| CAAGAAAGGCTGCAAATAGC+AGG | - | chr2_1:62037683-62037702 | Msa0216290:CDS | 45.0% | |
| ! | AGGCCTTTTCGGAGAAATGT+TGG | + | chr2_1:62037803-62037822 | None:intergenic | 45.0% |
| !! | CAGAGTAAGAGTGCTAATGG+TGG | - | chr2_1:62037973-62037992 | Msa0216290:CDS | 45.0% |
| ! | ATGCTTTAGGCAAGGAAGCT+GGG | + | chr2_1:62038035-62038054 | None:intergenic | 45.0% |
| ! | TATGCTTTAGGCAAGGAAGC+TGG | + | chr2_1:62038036-62038055 | None:intergenic | 45.0% |
| TGCACCTTATTACGAGATCG+CGG | - | chr2_1:62036790-62036809 | Msa0216290:CDS | 45.0% | |
| GTGGACTTACACATACACGA+AGG | - | chr2_1:62036812-62036831 | Msa0216290:CDS | 45.0% | |
| AGATGCTTTGATAGAGGTGG+AGG | - | chr2_1:62036960-62036979 | Msa0216290:CDS | 45.0% | |
| GATGCTTTGATAGAGGTGGA+GGG | - | chr2_1:62036961-62036980 | Msa0216290:CDS | 45.0% | |
| ATGCTTTGATAGAGGTGGAG+GGG | - | chr2_1:62036962-62036981 | Msa0216290:CDS | 45.0% | |
| TGATGGTACACAAGTTCCTC+CGG | - | chr2_1:62037002-62037021 | Msa0216290:CDS | 45.0% | |
| TATCTAGGTGCAAGATGTGC+TGG | + | chr2_1:62037186-62037205 | None:intergenic | 45.0% | |
| CATCTTGCACCTAGATATCG+TGG | - | chr2_1:62037189-62037208 | Msa0216290:intron | 45.0% | |
| ! | GCAGCCAAGACATTTTGTGT+TGG | + | chr2_1:62037228-62037247 | None:intergenic | 45.0% |
| AAAAACCCGAAGCTGCTGAA+TGG | - | chr2_1:62037563-62037582 | Msa0216290:intron | 45.0% | |
| TTTGGAGAAGATCGAGCAAC+AGG | - | chr2_1:62037628-62037647 | Msa0216290:intron | 45.0% | |
| CAAGAAAGGCTGCAAATAGC+AGG | - | chr2_1:62037683-62037702 | Msa0216290:CDS | 45.0% | |
| ! | AGGCCTTTTCGGAGAAATGT+TGG | + | chr2_1:62037803-62037822 | None:intergenic | 45.0% |
| !! | CAGAGTAAGAGTGCTAATGG+TGG | - | chr2_1:62037973-62037992 | Msa0216290:CDS | 45.0% |
| ! | ATGCTTTAGGCAAGGAAGCT+GGG | + | chr2_1:62038035-62038054 | None:intergenic | 45.0% |
| ! | TATGCTTTAGGCAAGGAAGC+TGG | + | chr2_1:62038036-62038055 | None:intergenic | 45.0% |
| ACCTTATTACGAGATCGCGG+TGG | - | chr2_1:62036793-62036812 | Msa0216290:CDS | 50.0% | |
| TCCACCGCGATCTCGTAATA+AGG | + | chr2_1:62036797-62036816 | None:intergenic | 50.0% | |
| !! | TACACGAAGGGCGTCTATTG+AGG | - | chr2_1:62036825-62036844 | Msa0216290:CDS | 50.0% |
| GGAGGAACTTGTGTACCATC+AGG | + | chr2_1:62037003-62037022 | None:intergenic | 50.0% | |
| CATGTCTTGGTTGGATGGGA+AGG | - | chr2_1:62037271-62037290 | Msa0216290:intron | 50.0% | |
| TGTCTCCATTCAGCAGCTTC+GGG | + | chr2_1:62037571-62037590 | None:intergenic | 50.0% | |
| GTGTCTCCATTCAGCAGCTT+CGG | + | chr2_1:62037572-62037591 | None:intergenic | 50.0% | |
| GCTGCAAATAGCAGGAGTCA+TGG | - | chr2_1:62037691-62037710 | Msa0216290:CDS | 50.0% | |
| !! | GAGTCATGGTGCTACCATAG+AGG | - | chr2_1:62037705-62037724 | Msa0216290:CDS | 50.0% |
| ACCTTATTACGAGATCGCGG+TGG | - | chr2_1:62036793-62036812 | Msa0216290:CDS | 50.0% | |
| TCCACCGCGATCTCGTAATA+AGG | + | chr2_1:62036797-62036816 | None:intergenic | 50.0% | |
| !! | TACACGAAGGGCGTCTATTG+AGG | - | chr2_1:62036825-62036844 | Msa0216290:CDS | 50.0% |
| GGAGGAACTTGTGTACCATC+AGG | + | chr2_1:62037003-62037022 | None:intergenic | 50.0% | |
| CATGTCTTGGTTGGATGGGA+AGG | - | chr2_1:62037271-62037290 | Msa0216290:intron | 50.0% | |
| TGTCTCCATTCAGCAGCTTC+GGG | + | chr2_1:62037571-62037590 | None:intergenic | 50.0% | |
| GTGTCTCCATTCAGCAGCTT+CGG | + | chr2_1:62037572-62037591 | None:intergenic | 50.0% | |
| GCTGCAAATAGCAGGAGTCA+TGG | - | chr2_1:62037691-62037710 | Msa0216290:CDS | 50.0% | |
| !! | GAGTCATGGTGCTACCATAG+AGG | - | chr2_1:62037705-62037724 | Msa0216290:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 62036553 | 62038164 | 62036553 | ID=Msa0216290;Name=Msa0216290 |
| chr2_1 | mRNA | 62036553 | 62038164 | 62036553 | ID=Msa0216290-mRNA-1;Parent=Msa0216290;Name=Msa0216290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|370 |
| chr2_1 | exon | 62037655 | 62038164 | 62037655 | ID=Msa0216290-mRNA-1:exon:17155;Parent=Msa0216290-mRNA-1 |
| chr2_1 | exon | 62036553 | 62037155 | 62036553 | ID=Msa0216290-mRNA-1:exon:17154;Parent=Msa0216290-mRNA-1 |
| chr2_1 | CDS | 62037655 | 62038164 | 62037655 | ID=Msa0216290-mRNA-1:cds;Parent=Msa0216290-mRNA-1 |
| chr2_1 | CDS | 62036553 | 62037155 | 62036553 | ID=Msa0216290-mRNA-1:cds;Parent=Msa0216290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
