Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692360 | GAU24967.1 | 68.347 | 357 | 109 | 3 | 176 | 532 | 190 | 542 | 1.31e-166 | 493 |
| Msa0692360 | GAU24967.1 | 92.188 | 64 | 5 | 0 | 117 | 180 | 1 | 64 | 1.43e-30 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692360 | A0A2Z6N6X0 | 68.347 | 357 | 109 | 3 | 176 | 532 | 190 | 542 | 6.24e-167 | 493 |
| Msa0692360 | A0A2Z6N6X0 | 92.188 | 64 | 5 | 0 | 117 | 180 | 1 | 64 | 6.84e-31 | 137 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006070 | Msa0692360 | 0.828526 | 8.562147e-55 | -8.615850e-47 |
| Msa0011170 | Msa0692360 | 0.812394 | 4.334743e-51 | -8.615850e-47 |
| Msa0012040 | Msa0692360 | 0.817668 | 2.926162e-52 | -8.615850e-47 |
| Msa0028660 | Msa0692360 | 0.813780 | 2.152368e-51 | -8.615850e-47 |
| Msa0079180 | Msa0692360 | 0.805596 | 1.236869e-49 | -8.615850e-47 |
| Msa0114060 | Msa0692360 | 0.801184 | 1.014723e-48 | -8.615850e-47 |
| Msa0115270 | Msa0692360 | 0.805691 | 1.181252e-49 | -8.615850e-47 |
| Msa0610430 | Msa0692360 | 0.842700 | 2.203126e-58 | -8.615850e-47 |
| Msa0617640 | Msa0692360 | 0.807757 | 4.324649e-50 | -8.615850e-47 |
| Msa0643350 | Msa0692360 | 0.801014 | 1.099629e-48 | -8.615850e-47 |
| Msa0661190 | Msa0692360 | -0.802015 | 6.853725e-49 | -8.615850e-47 |
| Msa0692360 | Msa0692830 | 0.812894 | 3.369687e-51 | -8.615850e-47 |
| Msa0692360 | Msa0692950 | 0.809406 | 1.922769e-50 | -8.615850e-47 |
| Msa0692360 | Msa0696390 | 0.808697 | 2.726536e-50 | -8.615850e-47 |
| Msa0692360 | Msa0715700 | 0.807646 | 4.567150e-50 | -8.615850e-47 |
| Msa0692360 | Msa0716840 | 0.822177 | 2.722793e-53 | -8.615850e-47 |
| Msa0692360 | Msa0766630 | 0.808269 | 3.365796e-50 | -8.615850e-47 |
| Msa0692360 | Msa0816700 | 0.804547 | 2.050213e-49 | -8.615850e-47 |
| Msa0692360 | Msa0820850 | 0.821168 | 4.660359e-53 | -8.615850e-47 |
| Msa0692360 | Msa0843260 | 0.808319 | 3.283803e-50 | -8.615850e-47 |
| Msa0692360 | Msa0861130 | 0.819367 | 1.205251e-52 | -8.615850e-47 |
| Msa0692360 | Msa0877880 | 0.803402 | 3.546606e-49 | -8.615850e-47 |
| Msa0692360 | Msa0909110 | 0.829883 | 4.011622e-55 | -8.615850e-47 |
| Msa0692360 | Msa0923870 | 0.812289 | 4.570435e-51 | -8.615850e-47 |
| Msa0692360 | Msa0938220 | 0.808807 | 2.583367e-50 | -8.615850e-47 |
| Msa0692360 | Msa0976670 | 0.809488 | 1.845748e-50 | -8.615850e-47 |
| Msa0692360 | Msa0993290 | 0.802019 | 6.843023e-49 | -8.615850e-47 |
| Msa0692360 | Msa0993600 | 0.803366 | 3.607428e-49 | -8.615850e-47 |
| Msa0692360 | Msa1003620 | 0.810212 | 1.289614e-50 | -8.615850e-47 |
| Msa0692360 | Msa1009820 | 0.813832 | 2.096794e-51 | -8.615850e-47 |
| Msa0692360 | Msa1014540 | 0.813172 | 2.928706e-51 | -8.615850e-47 |
| Msa0692360 | Msa1014730 | 0.807629 | 4.603469e-50 | -8.615850e-47 |
| Msa0692360 | Msa1051200 | 0.836808 | 7.531805e-57 | -8.615850e-47 |
| Msa0692360 | Msa1061680 | 0.806684 | 7.297383e-50 | -8.615850e-47 |
| Msa0692360 | Msa1075540 | 0.815139 | 1.077378e-51 | -8.615850e-47 |
| Msa0692360 | Msa1081910 | 0.805181 | 1.511357e-49 | -8.615850e-47 |
| Msa0692360 | Msa1104090 | 0.800831 | 1.198257e-48 | -8.615850e-47 |
| Msa0692360 | Msa1113170 | 0.805002 | 1.647271e-49 | -8.615850e-47 |
| Msa0692360 | Msa1137700 | 0.807141 | 5.841795e-50 | -8.615850e-47 |
| Msa0692360 | Msa1181250 | 0.828881 | 7.026332e-55 | -8.615850e-47 |
| Msa0692360 | Msa1181330 | 0.822216 | 2.666563e-53 | -8.615850e-47 |
| Msa0692360 | Msa1186950 | -0.807867 | 4.097419e-50 | -8.615850e-47 |
| Msa0692360 | Msa1224810 | 0.818148 | 2.279836e-52 | -8.615850e-47 |
| Msa0692360 | Msa1228590 | 0.813910 | 2.014841e-51 | -8.615850e-47 |
| Msa0692360 | Msa1277660 | 0.801725 | 7.861735e-49 | -8.615850e-47 |
| Msa0692360 | Msa1282580 | -0.812014 | 5.245808e-51 | -8.615850e-47 |
| Msa0692360 | Msa1284680 | 0.812019 | 5.232542e-51 | -8.615850e-47 |
| Msa0692360 | Msa1302850 | 0.820275 | 7.476188e-53 | -8.615850e-47 |
| Msa0692360 | Msa1373030 | 0.814360 | 1.603025e-51 | -8.615850e-47 |
| Msa0692360 | Msa1392780 | 0.804333 | 2.271900e-49 | -8.615850e-47 |
| Msa0692360 | Msa1403340 | 0.814035 | 1.891514e-51 | -8.615850e-47 |
| Msa0692360 | Msa1410100 | 0.809792 | 1.587999e-50 | -8.615850e-47 |
| Msa0692360 | Msa1419960 | 0.828606 | 8.188714e-55 | -8.615850e-47 |
| Msa0692360 | Msa1427230 | 0.800745 | 1.247806e-48 | -8.615850e-47 |
| Msa0692360 | Msa1455490 | 0.817668 | 2.927231e-52 | -8.615850e-47 |
| Msa0692360 | Msa1460830 | 0.807413 | 5.117262e-50 | -8.615850e-47 |
| Msa0150820 | Msa0692360 | 0.802314 | 5.948937e-49 | -8.615850e-47 |
| Msa0160550 | Msa0692360 | 0.819079 | 1.401989e-52 | -8.615850e-47 |
| Msa0216290 | Msa0692360 | 0.832354 | 9.916939e-56 | -8.615850e-47 |
| Msa0371730 | Msa0692360 | 0.800341 | 1.508233e-48 | -8.615850e-47 |
| Msa0383800 | Msa0692360 | 0.800502 | 1.398444e-48 | -8.615850e-47 |
| Msa0395970 | Msa0692360 | 0.800292 | 1.543432e-48 | -8.615850e-47 |
| Msa0412840 | Msa0692360 | 0.809032 | 2.312075e-50 | -8.615850e-47 |
| Msa0434180 | Msa0692360 | 0.804845 | 1.776376e-49 | -8.615850e-47 |
| Msa0442200 | Msa0692360 | 0.809082 | 2.255691e-50 | -8.615850e-47 |
| Msa0260680 | Msa0692360 | 0.800753 | 1.243005e-48 | -8.615850e-47 |
| Msa0279240 | Msa0692360 | 0.806697 | 7.252831e-50 | -8.615850e-47 |
| Msa0279700 | Msa0692360 | 0.804059 | 2.590526e-49 | -8.615850e-47 |
| Msa0279790 | Msa0692360 | 0.809600 | 1.746570e-50 | -8.615850e-47 |
| Msa0280090 | Msa0692360 | 0.804244 | 2.370271e-49 | -8.615850e-47 |
| Msa0309770 | Msa0692360 | 0.805474 | 1.311693e-49 | -8.615850e-47 |
| Msa0318980 | Msa0692360 | 0.822003 | 2.989068e-53 | -8.615850e-47 |
| Msa0333030 | Msa0692360 | 0.807075 | 6.035282e-50 | -8.615850e-47 |
| Msa0487800 | Msa0692360 | 0.805049 | 1.610284e-49 | -8.615850e-47 |
| Msa0512750 | Msa0692360 | 0.807628 | 4.606821e-50 | -8.615850e-47 |
| Msa0542090 | Msa0692360 | 0.806165 | 9.391321e-50 | -8.615850e-47 |
| Msa0542130 | Msa0692360 | 0.804173 | 2.452796e-49 | -8.615850e-47 |
| Msa0592440 | Msa0692360 | 0.814617 | 1.406351e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692360 | MtrunA17_Chr7g0226311 | 52.318 | 151 | 69 | 1 | 56 | 203 | 1 | 151 | 1.28e-45 | 163 |
| Msa0692360 | MtrunA17_Chr3g0087491 | 31.475 | 305 | 163 | 8 | 240 | 524 | 1 | 279 | 4.73e-35 | 133 |
| Msa0692360 | MtrunA17_Chr8g0360541 | 61.616 | 99 | 37 | 1 | 383 | 481 | 12 | 109 | 6.31e-32 | 119 |
| Msa0692360 | MtrunA17_Chr8g0360141 | 29.846 | 325 | 171 | 10 | 240 | 533 | 1 | 299 | 5.00e-31 | 122 |
| Msa0692360 | MtrunA17_Chr6g0477141 | 48.696 | 115 | 58 | 1 | 63 | 177 | 139 | 252 | 9.39e-26 | 110 |
| Msa0692360 | MtrunA17_Chr6g0478531 | 45.614 | 114 | 61 | 1 | 64 | 177 | 38 | 150 | 3.77e-25 | 107 |
| Msa0692360 | MtrunA17_Chr2g0321401 | 38.776 | 147 | 84 | 3 | 64 | 205 | 65 | 210 | 4.30e-23 | 99.0 |
| Msa0692360 | MtrunA17_Chr1g0190171 | 38.776 | 147 | 84 | 3 | 64 | 205 | 66 | 211 | 6.71e-22 | 98.2 |
| Msa0692360 | MtrunA17_Chr1g0172731 | 38.776 | 147 | 84 | 3 | 64 | 205 | 66 | 211 | 7.64e-22 | 97.8 |
| Msa0692360 | MtrunA17_Chr1g0207391 | 43.363 | 113 | 63 | 1 | 68 | 180 | 92 | 203 | 1.02e-21 | 97.8 |
| Msa0692360 | MtrunA17_Chr2g0285471 | 37.762 | 143 | 83 | 3 | 68 | 205 | 1 | 142 | 4.97e-21 | 91.3 |
| Msa0692360 | MtrunA17_Chr8g0334561 | 37.762 | 143 | 83 | 3 | 64 | 201 | 66 | 207 | 9.59e-21 | 92.0 |
| Msa0692360 | MtrunA17_Chr7g0267201 | 39.496 | 119 | 63 | 1 | 71 | 180 | 1 | 119 | 2.11e-19 | 85.9 |
| Msa0692360 | MtrunA17_Chr1g0182341 | 38.095 | 126 | 69 | 1 | 64 | 180 | 60 | 185 | 4.63e-19 | 89.4 |
| Msa0692360 | MtrunA17_Chr2g0302731 | 37.719 | 114 | 68 | 3 | 220 | 333 | 6 | 116 | 1.69e-17 | 79.0 |
| Msa0692360 | MtrunA17_Chr8g0391981 | 36.552 | 145 | 85 | 3 | 69 | 210 | 82 | 222 | 2.30e-17 | 84.3 |
| Msa0692360 | MtrunA17_Chr3g0113081 | 29.167 | 168 | 106 | 4 | 200 | 365 | 356 | 512 | 3.43e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0692360 | AT5G41980.1 | 43.697 | 119 | 61 | 3 | 62 | 180 | 39 | 151 | 4.76e-23 | 101 |
| Msa0692360 | AT1G43722.1 | 35.766 | 137 | 84 | 2 | 67 | 200 | 68 | 203 | 6.36e-15 | 76.3 |
| Msa0692360 | AT2G24960.2 | 31.783 | 129 | 85 | 2 | 236 | 364 | 327 | 452 | 3.04e-13 | 73.2 |
Find 108 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGATTCTAGAATGTATT+TGG | 0.158594 | 4_4:-60807748 | None:intergenic |
| TGAAACCAATGAAGTTATTT+TGG | 0.159437 | 4_4:+60809794 | Msa0692360:CDS |
| GTGCTAATGGTGGAGATATT+TGG | 0.190376 | 4_4:+60810033 | Msa0692360:CDS |
| TAGTCCAATTGCATGTTTCT+AGG | 0.233764 | 4_4:-60809206 | None:intergenic |
| TGGGCTGAATTAGTCGAAAT+TGG | 0.264996 | 4_4:+60810053 | Msa0692360:CDS |
| ATATATTACCATTAATAAAA+AGG | 0.271929 | 4_4:-60810203 | None:intergenic |
| TGTCTCCATTCAGCAGCTTC+AGG | 0.282942 | 4_4:-60809618 | None:intergenic |
| TCCACCGCGATCACGTAATA+AGG | 0.289395 | 4_4:-60807876 | None:intergenic |
| TCTTTCTTCTTTAGACGTTC+TGG | 0.297044 | 4_4:+60807986 | Msa0692360:CDS |
| CCCGCAACGTCATCTCTAAT+TGG | 0.308268 | 4_4:-60808926 | None:intergenic |
| GAGCTAATGAAACATATTAT+AGG | 0.312558 | 4_4:+60807794 | Msa0692360:CDS |
| ATTGCATGTTTCTAGGCCTT+TGG | 0.320015 | 4_4:-60809199 | None:intergenic |
| TGTGACAGTTTGATGACTTA+TGG | 0.334284 | 4_4:+60810369 | Msa0692360:three_prime_UTR |
| CAAAATGGTTTGAGTGGATT+CGG | 0.338092 | 4_4:+60809435 | Msa0692360:CDS |
| TTTCTATTTACCTTAAAATA+CGG | 0.338477 | 4_4:-60808133 | None:intergenic |
| TAAAATGAGCTCAGAGGAAT+TGG | 0.348290 | 4_4:+60809995 | Msa0692360:CDS |
| CAAATGATCTATTTCCTCTA+TGG | 0.351245 | 4_4:-60809769 | None:intergenic |
| GCAAAGTTTCTTTACATAGT+AGG | 0.351556 | 4_4:+60807938 | Msa0692360:CDS |
| CCTCTCCAAAATAACTTCAT+TGG | 0.354565 | 4_4:-60809799 | None:intergenic |
| AATTTATAATAAAACGGTAT+AGG | 0.359247 | 4_4:-60809645 | None:intergenic |
| ACAAGGTACATGTATACTTT+AGG | 0.365697 | 4_4:-60810095 | None:intergenic |
| CATAGAGGAAATAGATCATT+TGG | 0.369976 | 4_4:+60809770 | Msa0692360:CDS |
| TCTTTAGAAATTGGTTTGTC+CGG | 0.373847 | 4_4:-60809351 | None:intergenic |
| TGTGATTCTAGAATGTATTT+GGG | 0.377174 | 4_4:-60807747 | None:intergenic |
| CACAAGTTTAAGAAAGCTTC+GGG | 0.379351 | 4_4:-60807851 | None:intergenic |
| ATTTCCTTGCGGTTATCAAT+TGG | 0.382990 | 4_4:-60810155 | None:intergenic |
| TTGACACAATTTCGCATACT+TGG | 0.383218 | 4_4:-60807657 | None:intergenic |
| TCTAGGCCTTTGGATTTCCT+TGG | 0.393297 | 4_4:-60809189 | None:intergenic |
| ATTGAATGTCAGGATTGTAT+TGG | 0.404459 | 4_4:+60808208 | Msa0692360:intron |
| CGGAGATACTTAACAACAAT+AGG | 0.410694 | 4_4:+60808104 | Msa0692360:CDS |
| GTTAATTATTATTGTCATCC+TGG | 0.412332 | 4_4:+60810426 | Msa0692360:three_prime_UTR |
| CCAATTAGAGATGACGTTGC+GGG | 0.412600 | 4_4:+60808926 | Msa0692360:CDS |
| TATACTTTAGGCAAGGAAGC+TGG | 0.417718 | 4_4:-60810083 | None:intergenic |
| TGCTAATGGTGGAGATATTT+GGG | 0.420787 | 4_4:+60810034 | Msa0692360:CDS |
| TTTGGAAAAGATCGAGCAAC+AGG | 0.428413 | 4_4:+60809678 | Msa0692360:CDS |
| ATGAAAATTTGCAGGTATTG+TGG | 0.428884 | 4_4:+60810285 | Msa0692360:three_prime_UTR |
| GCACAAGTTTAAGAAAGCTT+CGG | 0.437403 | 4_4:-60807852 | None:intergenic |
| ATGAGTATATGAAAATTTGC+AGG | 0.437800 | 4_4:+60810277 | Msa0692360:three_prime_UTR |
| TTCTAGAATCACAGAGCATA+GGG | 0.441681 | 4_4:+60807757 | Msa0692360:CDS |
| GTTGACAATACTATTCTTCA+AGG | 0.443103 | 4_4:-60810311 | None:intergenic |
| TTGGCTAATTTATAATAAAA+CGG | 0.449294 | 4_4:-60809651 | None:intergenic |
| AGAGTTGAAGAATCACTTCC+CGG | 0.449459 | 4_4:+60809332 | Msa0692360:CDS |
| GACAATGTTGATGCAGTTAG+TGG | 0.451010 | 4_4:+60808899 | Msa0692360:CDS |
| TAGTTTGATGACAATTGTTT+TGG | 0.458548 | 4_4:+60810401 | Msa0692360:three_prime_UTR |
| TCTTGAGAAGTAGAAATAGA+AGG | 0.460904 | 4_4:-60809870 | None:intergenic |
| CTTTGAAATGAGAGCAAGAA+AGG | 0.466525 | 4_4:+60809719 | Msa0692360:CDS |
| ATAGTATTGTCAACTACAAT+GGG | 0.472459 | 4_4:+60810320 | Msa0692360:three_prime_UTR |
| ATTCCAACATTTCTCCGAAA+AGG | 0.472932 | 4_4:+60809847 | Msa0692360:CDS |
| AAACAGAGTAAGAGTGCTAA+TGG | 0.473053 | 4_4:+60810020 | Msa0692360:CDS |
| TTCTATTTACCTTAAAATAC+GGG | 0.474287 | 4_4:-60808132 | None:intergenic |
| CTTGGCTCTTATGTCTTCGT+TGG | 0.477093 | 4_4:-60807639 | None:intergenic |
| AAGGCCTAGAAACATGCAAT+TGG | 0.479046 | 4_4:+60809202 | Msa0692360:CDS |
| CAAGAAAGGCTGCAAATAGC+AGG | 0.488896 | 4_4:+60809733 | Msa0692360:CDS |
| CTCAAGATGTGTCATCATCT+AGG | 0.491937 | 4_4:+60809886 | Msa0692360:CDS |
| GGACTGCTGAAGATGACGTT+TGG | 0.494033 | 4_4:+60809481 | Msa0692360:CDS |
| GACTTTAAAGACAATGGTTG+AGG | 0.496784 | 4_4:+60809968 | Msa0692360:CDS |
| GATGTGTTTAGTATTAGATA+TGG | 0.497647 | 4_4:+60809149 | Msa0692360:intron |
| CTATTGTTGTTAAGTATCTC+CGG | 0.506373 | 4_4:-60808103 | None:intergenic |
| CGTTTGGGACAGGCTAATTG+AGG | 0.506705 | 4_4:+60809497 | Msa0692360:CDS |
| ACAGGAGATCATGAAGATAC+AGG | 0.507346 | 4_4:+60809696 | Msa0692360:CDS |
| ATGCAATTGGACTACTGCTA+TGG | 0.507466 | 4_4:+60809215 | Msa0692360:CDS |
| GACTGCTGAAGATGACGTTT+GGG | 0.515306 | 4_4:+60809482 | Msa0692360:CDS |
| AATAGTATTGTCAACTACAA+TGG | 0.516447 | 4_4:+60810319 | Msa0692360:three_prime_UTR |
| ATCTTCCACTTTATAGCACC+AGG | 0.517905 | 4_4:-60810444 | None:intergenic |
| TGGTTTGAGTGGATTCGGAT+GGG | 0.524805 | 4_4:+60809440 | Msa0692360:CDS |
| CATGAATGATGGTATTGTAA+AGG | 0.525360 | 4_4:+60810508 | Msa0692360:three_prime_UTR |
| AGATGCTTTGATAGAGGTGG+AGG | 0.526373 | 4_4:+60808042 | Msa0692360:CDS |
| TTCTAAGACTTTAAAGACAA+TGG | 0.527887 | 4_4:+60809962 | Msa0692360:CDS |
| CTTTAGAAATTGGTTTGTCC+GGG | 0.529559 | 4_4:-60809350 | None:intergenic |
| ATCAATGTACTCATGAATGA+TGG | 0.529791 | 4_4:+60810497 | Msa0692360:three_prime_UTR |
| TATTTGCATCAACTAACAAT+GGG | 0.532643 | 4_4:+60809258 | Msa0692360:CDS |
| CTGAAGATGACGTTTGGGAC+AGG | 0.535636 | 4_4:+60809487 | Msa0692360:CDS |
| GGAGGAACTTGTGTACCATC+AGG | 0.541910 | 4_4:-60808082 | None:intergenic |
| TAGTATGACATCAAGCGCTA+TGG | 0.543647 | 4_4:+60809296 | Msa0692360:CDS |
| ATGGTTTGAGTGGATTCGGA+TGG | 0.547811 | 4_4:+60809439 | Msa0692360:CDS |
| GTCATCCTGGTGCTATAAAG+TGG | 0.548699 | 4_4:+60810439 | Msa0692360:three_prime_UTR |
| AGTACTAGATGCTTTGATAG+AGG | 0.550849 | 4_4:+60808036 | Msa0692360:CDS |
| ACTAGATGCTTTGATAGAGG+TGG | 0.554426 | 4_4:+60808039 | Msa0692360:CDS |
| TTGGACTACTGCTATGGATG+GGG | 0.554651 | 4_4:+60809221 | Msa0692360:CDS |
| ATACTTTAGGCAAGGAAGCT+GGG | 0.561001 | 4_4:-60810082 | None:intergenic |
| ATTCTAGAATCACAGAGCAT+AGG | 0.567693 | 4_4:+60807756 | Msa0692360:CDS |
| AATGAAAATGATTCTCAAGA+GGG | 0.572023 | 4_4:+60808857 | Msa0692360:CDS |
| TGATGGTACACAAGTTCCTC+CGG | 0.574268 | 4_4:+60808084 | Msa0692360:CDS |
| GGGATTCTACGACAAATATG+TGG | 0.579377 | 4_4:+60809460 | Msa0692360:CDS |
| ATGCAAATTCAAAGAGGCCA+AGG | 0.581260 | 4_4:+60809172 | Msa0692360:CDS |
| ATTGGACTACTGCTATGGAT+GGG | 0.584151 | 4_4:+60809220 | Msa0692360:CDS |
| ATATTTGCATCAACTAACAA+TGG | 0.592612 | 4_4:+60809257 | Msa0692360:CDS |
| AATTGGACTACTGCTATGGA+TGG | 0.599809 | 4_4:+60809219 | Msa0692360:CDS |
| GAGTCATGGTGCTACCATAG+AGG | 0.605019 | 4_4:+60809755 | Msa0692360:CDS |
| GCTGCAAATAGCAGGAGTCA+TGG | 0.606627 | 4_4:+60809741 | Msa0692360:CDS |
| ATGCTTTGATAGAGGTGGAG+GGG | 0.606730 | 4_4:+60808044 | Msa0692360:CDS |
| ATGCATCAGCATTCTTAACA+AGG | 0.609163 | 4_4:-60810112 | None:intergenic |
| GCCAATTAGAGATGACGTTG+CGG | 0.615160 | 4_4:+60808925 | Msa0692360:CDS |
| AAATGAAAATGATTCTCAAG+AGG | 0.622151 | 4_4:+60808856 | Msa0692360:CDS |
| ATATTTCTGAAACAACCTGA+TGG | 0.629332 | 4_4:+60808067 | Msa0692360:CDS |
| GATGCTTTGATAGAGGTGGA+GGG | 0.640286 | 4_4:+60808043 | Msa0692360:CDS |
| GTACATGTATACTTTAGGCA+AGG | 0.641875 | 4_4:-60810090 | None:intergenic |
| CAGAGTAAGAGTGCTAATGG+TGG | 0.647513 | 4_4:+60810023 | Msa0692360:CDS |
| AATTCCAATTGATAACCGCA+AGG | 0.651275 | 4_4:+60810151 | Msa0692360:CDS |
| AAGAGGCCAAGGAAATCCAA+AGG | 0.657202 | 4_4:+60809183 | Msa0692360:CDS |
| ACCTTATTACGTGATCGCGG+TGG | 0.672278 | 4_4:+60807875 | Msa0692360:CDS |
| TGGACTTACACATACACGAA+GGG | 0.678368 | 4_4:+60807895 | Msa0692360:CDS |
| TGCACCTTATTACGTGATCG+CGG | 0.681624 | 4_4:+60807872 | Msa0692360:CDS |
| GGTGTTTAAAATGAGCTCAG+AGG | 0.683108 | 4_4:+60809989 | Msa0692360:CDS |
| ATATGGATGCAAATTCAAAG+AGG | 0.687133 | 4_4:+60809166 | Msa0692360:CDS |
| TTGTTGTTAAGTATCTCCGG+AGG | 0.687222 | 4_4:-60808100 | None:intergenic |
| TGAGATGTAACATTTCCTTG+CGG | 0.688770 | 4_4:-60810166 | None:intergenic |
| GTGGACTTACACATACACGA+AGG | 0.701442 | 4_4:+60807894 | Msa0692360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAGGAAAATATTATT+TGG | + | chr4_4:60808514-60808533 | Msa0692360:intron | 10.0% |
| !! | TTTATAGGAAAATATTATTT+GGG | + | chr4_4:60808515-60808534 | Msa0692360:intron | 10.0% |
| !!! | TTTTGAATGAATTTTATTTA+TGG | + | chr4_4:60809016-60809035 | Msa0692360:intron | 10.0% |
| !! | ATATATTACCATTAATAAAA+AGG | - | chr4_4:60810206-60810225 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAGTCAAATAT+AGG | - | chr4_4:60810346-60810365 | None:intergenic | 10.0% |
| !! | TTTCTATTTACCTTAAAATA+CGG | - | chr4_4:60808136-60808155 | None:intergenic | 15.0% |
| !!! | ATAAACTCGTTATTTTTTAT+AGG | + | chr4_4:60808500-60808519 | Msa0692360:intron | 15.0% |
| !!! | ATTTTTGAGTTTGTAATTTT+TGG | + | chr4_4:60809044-60809063 | Msa0692360:intron | 15.0% |
| !!! | TTTATCTTTTCTTTAGAAAT+TGG | - | chr4_4:60809363-60809382 | None:intergenic | 15.0% |
| !! | AATTTATAATAAAACGGTAT+AGG | - | chr4_4:60809648-60809667 | None:intergenic | 15.0% |
| !! | TTGGCTAATTTATAATAAAA+CGG | - | chr4_4:60809654-60809673 | None:intergenic | 15.0% |
| !! | TTCTATTTACCTTAAAATAC+GGG | - | chr4_4:60808135-60808154 | None:intergenic | 20.0% |
| !! | TAATATGTTAATTGAATGTC+AGG | + | chr4_4:60808198-60808217 | Msa0692360:intron | 20.0% |
| !!! | GTTTTTTTTTTTTTACCTTG+CGG | - | chr4_4:60808442-60808461 | None:intergenic | 20.0% |
| !! | AAATAACGAGTTTATTAGTT+TGG | - | chr4_4:60808495-60808514 | None:intergenic | 20.0% |
| !! | AAATATGAGTTTGTAATTTG+TGG | + | chr4_4:60809070-60809089 | Msa0692360:intron | 20.0% |
| !!! | AGGTAGTATTTACTTTTAAT+GGG | + | chr4_4:60809517-60809536 | Msa0692360:intron | 20.0% |
| !!! | TATAAATTAGCCAAACTTTT+TGG | + | chr4_4:60809660-60809679 | Msa0692360:CDS | 20.0% |
| !!! | TGTGATTCTAGAATGTATTT+GGG | - | chr4_4:60807750-60807769 | None:intergenic | 25.0% |
| ! | GAGCTAATGAAACATATTAT+AGG | + | chr4_4:60807794-60807813 | Msa0692360:CDS | 25.0% |
| ! | CTTGAAATTTACATATGTCT+TGG | + | chr4_4:60808342-60808361 | Msa0692360:intron | 25.0% |
| ! | AAATTTACATATGTCTTGGT+TGG | + | chr4_4:60808346-60808365 | Msa0692360:intron | 25.0% |
| !!! | TGAGTTTTAATACCAAATGT+GGG | - | chr4_4:60808740-60808759 | None:intergenic | 25.0% |
| !!! | TTGAGTTTTAATACCAAATG+TGG | - | chr4_4:60808741-60808760 | None:intergenic | 25.0% |
| ! | AAATGAAAATGATTCTCAAG+AGG | + | chr4_4:60808856-60808875 | Msa0692360:CDS | 25.0% |
| ! | AATGAAAATGATTCTCAAGA+GGG | + | chr4_4:60808857-60808876 | Msa0692360:CDS | 25.0% |
| ! | CATAAGAATAACAACTCATT+AGG | - | chr4_4:60808981-60809000 | None:intergenic | 25.0% |
| ! | GATGTGTTTAGTATTAGATA+TGG | + | chr4_4:60809149-60809168 | Msa0692360:intron | 25.0% |
| ! | ATATTTGCATCAACTAACAA+TGG | + | chr4_4:60809257-60809276 | Msa0692360:CDS | 25.0% |
| ! | TATTTGCATCAACTAACAAT+GGG | + | chr4_4:60809258-60809277 | Msa0692360:CDS | 25.0% |
| ! | CTAACAATGGGAAATAAAAA+TGG | + | chr4_4:60809270-60809289 | Msa0692360:CDS | 25.0% |
| !!! | TTTTGAAAAAGGTCATAACA+AGG | - | chr4_4:60809420-60809439 | None:intergenic | 25.0% |
| !!! | TGTTATGACCTTTTTCAAAA+TGG | + | chr4_4:60809420-60809439 | Msa0692360:CDS | 25.0% |
| !!! | GAGGTAGTATTTACTTTTAA+TGG | + | chr4_4:60809516-60809535 | Msa0692360:intron | 25.0% |
| !! | TGAAACCAATGAAGTTATTT+TGG | + | chr4_4:60809794-60809813 | Msa0692360:CDS | 25.0% |
| !!! | TTCTAAGACTTTAAAGACAA+TGG | + | chr4_4:60809962-60809981 | Msa0692360:CDS | 25.0% |
| ! | CATTAATAAAAAGGATAGTC+GGG | - | chr4_4:60810197-60810216 | None:intergenic | 25.0% |
| ! | CCATTAATAAAAAGGATAGT+CGG | - | chr4_4:60810198-60810217 | None:intergenic | 25.0% |
| ! | ATGAGTATATGAAAATTTGC+AGG | + | chr4_4:60810277-60810296 | Msa0692360:three_prime_UTR | 25.0% |
| ! | AATAGTATTGTCAACTACAA+TGG | + | chr4_4:60810319-60810338 | Msa0692360:three_prime_UTR | 25.0% |
| ! | ATAGTATTGTCAACTACAAT+GGG | + | chr4_4:60810320-60810339 | Msa0692360:three_prime_UTR | 25.0% |
| !!! | TAGTTTGATGACAATTGTTT+TGG | + | chr4_4:60810401-60810420 | Msa0692360:three_prime_UTR | 25.0% |
| ! | GTTAATTATTATTGTCATCC+TGG | + | chr4_4:60810426-60810445 | Msa0692360:three_prime_UTR | 25.0% |
| !! | CTGTGATTCTAGAATGTATT+TGG | - | chr4_4:60807751-60807770 | None:intergenic | 30.0% |
| GCAAAGTTTCTTTACATAGT+AGG | + | chr4_4:60807938-60807957 | Msa0692360:CDS | 30.0% | |
| !! | ATATTTCTGAAACAACCTGA+TGG | + | chr4_4:60808067-60808086 | Msa0692360:CDS | 30.0% |
| ! | CTATTGTTGTTAAGTATCTC+CGG | - | chr4_4:60808106-60808125 | None:intergenic | 30.0% |
| ATTGAATGTCAGGATTGTAT+TGG | + | chr4_4:60808208-60808227 | Msa0692360:intron | 30.0% | |
| TCTAGATACTTGTACAATTC+TGG | - | chr4_4:60808468-60808487 | None:intergenic | 30.0% | |
| AAATATTATTTGGGTGATGC+AGG | + | chr4_4:60808524-60808543 | Msa0692360:intron | 30.0% | |
| TATGGTTGAATAATTCACGA+GGG | - | chr4_4:60808634-60808653 | None:intergenic | 30.0% | |
| TCAGTTGAAGTTTGTAGAAT+TGG | - | chr4_4:60808716-60808735 | None:intergenic | 30.0% | |
| TCATCTATTAGAGTTTGGTT+GGG | - | chr4_4:60808818-60808837 | None:intergenic | 30.0% | |
| ! | GGATTGCATTTGAGTTTAAA+TGG | + | chr4_4:60809091-60809110 | Msa0692360:intron | 30.0% |
| ATATGGATGCAAATTCAAAG+AGG | + | chr4_4:60809166-60809185 | Msa0692360:CDS | 30.0% | |
| !! | TCTTTAGAAATTGGTTTGTC+CGG | - | chr4_4:60809354-60809373 | None:intergenic | 30.0% |
| TGAAAAACATCAAAGCAAAG+TGG | + | chr4_4:60809391-60809410 | Msa0692360:CDS | 30.0% | |
| !! | CACTCAAACCATTTTGAAAA+AGG | - | chr4_4:60809431-60809450 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAAATGGTTTGAG+TGG | + | chr4_4:60809429-60809448 | Msa0692360:CDS | 30.0% |
| ! | TCGATCTTTTCCAAAAAGTT+TGG | - | chr4_4:60809673-60809692 | None:intergenic | 30.0% |
| CAAATGATCTATTTCCTCTA+TGG | - | chr4_4:60809772-60809791 | None:intergenic | 30.0% | |
| CATAGAGGAAATAGATCATT+TGG | + | chr4_4:60809770-60809789 | Msa0692360:CDS | 30.0% | |
| TCTTGAGAAGTAGAAATAGA+AGG | - | chr4_4:60809873-60809892 | None:intergenic | 30.0% | |
| ACAAGGTACATGTATACTTT+AGG | - | chr4_4:60810098-60810117 | None:intergenic | 30.0% | |
| ! | GATGCATTGAAAGCTTTTAA+TGG | + | chr4_4:60810128-60810147 | Msa0692360:CDS | 30.0% |
| ! | CCGACTATCCTTTTTATTAA+TGG | + | chr4_4:60810195-60810214 | Msa0692360:CDS | 30.0% |
| ! | ATGAAAATTTGCAGGTATTG+TGG | + | chr4_4:60810285-60810304 | Msa0692360:three_prime_UTR | 30.0% |
| GTTGACAATACTATTCTTCA+AGG | - | chr4_4:60810314-60810333 | None:intergenic | 30.0% | |
| ATCAATGTACTCATGAATGA+TGG | + | chr4_4:60810497-60810516 | Msa0692360:three_prime_UTR | 30.0% | |
| CATGAATGATGGTATTGTAA+AGG | + | chr4_4:60810508-60810527 | Msa0692360:three_prime_UTR | 30.0% | |
| TTGACACAATTTCGCATACT+TGG | - | chr4_4:60807660-60807679 | None:intergenic | 35.0% | |
| !! | ATTCTAGAATCACAGAGCAT+AGG | + | chr4_4:60807756-60807775 | Msa0692360:CDS | 35.0% |
| !! | TTCTAGAATCACAGAGCATA+GGG | + | chr4_4:60807757-60807776 | Msa0692360:CDS | 35.0% |
| CACAAGTTTAAGAAAGCTTC+GGG | - | chr4_4:60807854-60807873 | None:intergenic | 35.0% | |
| GCACAAGTTTAAGAAAGCTT+CGG | - | chr4_4:60807855-60807874 | None:intergenic | 35.0% | |
| TCTTTCTTCTTTAGACGTTC+TGG | + | chr4_4:60807986-60808005 | Msa0692360:CDS | 35.0% | |
| AGTACTAGATGCTTTGATAG+AGG | + | chr4_4:60808036-60808055 | Msa0692360:CDS | 35.0% | |
| CGGAGATACTTAACAACAAT+AGG | + | chr4_4:60808104-60808123 | Msa0692360:CDS | 35.0% | |
| ! | TAGGTTCTACCCGTATTTTA+AGG | + | chr4_4:60808123-60808142 | Msa0692360:CDS | 35.0% |
| ! | TCTTTTCTACCACGATATCT+AGG | - | chr4_4:60808283-60808302 | None:intergenic | 35.0% |
| TTACCCAACACAAAATGTCT+TGG | + | chr4_4:60808303-60808322 | Msa0692360:intron | 35.0% | |
| TTACATATGTCTTGGTTGGA+TGG | + | chr4_4:60808350-60808369 | Msa0692360:intron | 35.0% | |
| TACATATGTCTTGGTTGGAT+GGG | + | chr4_4:60808351-60808370 | Msa0692360:intron | 35.0% | |
| TGATGCAGGATTTCCTTTAA+AGG | + | chr4_4:60808538-60808557 | Msa0692360:intron | 35.0% | |
| ATGTCTCATCACACCTTATA+GGG | + | chr4_4:60808562-60808581 | Msa0692360:intron | 35.0% | |
| !! | ACCACTTACAAGAGTATTCT+AGG | + | chr4_4:60808594-60808613 | Msa0692360:intron | 35.0% |
| TCCTAGAATACTCTTGTAAG+TGG | - | chr4_4:60808598-60808617 | None:intergenic | 35.0% | |
| CTATGGTTGAATAATTCACG+AGG | - | chr4_4:60808635-60808654 | None:intergenic | 35.0% | |
| TTCGTAATGACGAATGTCTA+TGG | - | chr4_4:60808652-60808671 | None:intergenic | 35.0% | |
| ! | ATGTCGATTGAATGTGCATT+TGG | + | chr4_4:60808671-60808690 | Msa0692360:intron | 35.0% |
| CATCTATTAGAGTTTGGTTG+GGG | - | chr4_4:60808817-60808836 | None:intergenic | 35.0% | |
| CTCATCTATTAGAGTTTGGT+TGG | - | chr4_4:60808819-60808838 | None:intergenic | 35.0% | |
| CAACCAAACTCTAATAGATG+AGG | + | chr4_4:60808817-60808836 | Msa0692360:intron | 35.0% | |
| TAGTCCAATTGCATGTTTCT+AGG | - | chr4_4:60809209-60809228 | None:intergenic | 35.0% | |
| !! | CTTTAGAAATTGGTTTGTCC+GGG | - | chr4_4:60809353-60809372 | None:intergenic | 35.0% |
| ! | CAAAATGGTTTGAGTGGATT+CGG | + | chr4_4:60809435-60809454 | Msa0692360:CDS | 35.0% |
| !! | CTTTGAAATGAGAGCAAGAA+AGG | + | chr4_4:60809719-60809738 | Msa0692360:CDS | 35.0% |
| CCTCTCCAAAATAACTTCAT+TGG | - | chr4_4:60809802-60809821 | None:intergenic | 35.0% | |
| !!! | CCAATGAAGTTATTTTGGAG+AGG | + | chr4_4:60809799-60809818 | Msa0692360:CDS | 35.0% |
| ATTCCAACATTTCTCCGAAA+AGG | + | chr4_4:60809847-60809866 | Msa0692360:CDS | 35.0% | |
| ! | GTAGAAATAGAAGGCCTTTT+CGG | - | chr4_4:60809864-60809883 | None:intergenic | 35.0% |
| GACTAAGAAACGAGCAAAAA+AGG | + | chr4_4:60809908-60809927 | Msa0692360:CDS | 35.0% | |
| ! | GACTTTAAAGACAATGGTTG+AGG | + | chr4_4:60809968-60809987 | Msa0692360:CDS | 35.0% |
| TAAAATGAGCTCAGAGGAAT+TGG | + | chr4_4:60809995-60810014 | Msa0692360:CDS | 35.0% | |
| !! | AAACAGAGTAAGAGTGCTAA+TGG | + | chr4_4:60810020-60810039 | Msa0692360:CDS | 35.0% |
| ! | TGCTAATGGTGGAGATATTT+GGG | + | chr4_4:60810034-60810053 | Msa0692360:CDS | 35.0% |
| GTACATGTATACTTTAGGCA+AGG | - | chr4_4:60810093-60810112 | None:intergenic | 35.0% | |
| ATGCATCAGCATTCTTAACA+AGG | - | chr4_4:60810115-60810134 | None:intergenic | 35.0% | |
| ! | AATTCCAATTGATAACCGCA+AGG | + | chr4_4:60810151-60810170 | Msa0692360:CDS | 35.0% |
| ATTTCCTTGCGGTTATCAAT+TGG | - | chr4_4:60810158-60810177 | None:intergenic | 35.0% | |
| TGAGATGTAACATTTCCTTG+CGG | - | chr4_4:60810169-60810188 | None:intergenic | 35.0% | |
| ! | TGTGACAGTTTGATGACTTA+TGG | + | chr4_4:60810369-60810388 | Msa0692360:three_prime_UTR | 35.0% |
| TGGACTTACACATACACGAA+GGG | + | chr4_4:60807895-60807914 | Msa0692360:CDS | 40.0% | |
| ACTAGATGCTTTGATAGAGG+TGG | + | chr4_4:60808039-60808058 | Msa0692360:CDS | 40.0% | |
| ! | TTGTTGTTAAGTATCTCCGG+AGG | - | chr4_4:60808103-60808122 | None:intergenic | 40.0% |
| ! | CAGCCAAGACATTTTGTGTT+GGG | - | chr4_4:60808309-60808328 | None:intergenic | 40.0% |
| TATCCTCTTAAAGTTCCGCA+AGG | + | chr4_4:60808424-60808443 | Msa0692360:intron | 40.0% | |
| TTACCTTGCGGAACTTTAAG+AGG | - | chr4_4:60808430-60808449 | None:intergenic | 40.0% | |
| GTGATGAGACATGCCTTTAA+AGG | - | chr4_4:60808554-60808573 | None:intergenic | 40.0% | |
| CATGTCTCATCACACCTTAT+AGG | + | chr4_4:60808561-60808580 | Msa0692360:intron | 40.0% | |
| TGTCTCATCACACCTTATAG+GGG | + | chr4_4:60808563-60808582 | Msa0692360:intron | 40.0% | |
| AATAATTCACGAGGGTTTCG+AGG | - | chr4_4:60808626-60808645 | None:intergenic | 40.0% | |
| GCACCTCATCTATTAGAGTT+TGG | - | chr4_4:60808823-60808842 | None:intergenic | 40.0% | |
| GACAATGTTGATGCAGTTAG+TGG | + | chr4_4:60808899-60808918 | Msa0692360:CDS | 40.0% | |
| ATGCAAATTCAAAGAGGCCA+AGG | + | chr4_4:60809172-60809191 | Msa0692360:CDS | 40.0% | |
| !! | ATTGCATGTTTCTAGGCCTT+TGG | - | chr4_4:60809202-60809221 | None:intergenic | 40.0% |
| AAGGCCTAGAAACATGCAAT+TGG | + | chr4_4:60809202-60809221 | Msa0692360:CDS | 40.0% | |
| ATGCAATTGGACTACTGCTA+TGG | + | chr4_4:60809215-60809234 | Msa0692360:CDS | 40.0% | |
| AATTGGACTACTGCTATGGA+TGG | + | chr4_4:60809219-60809238 | Msa0692360:CDS | 40.0% | |
| ATTGGACTACTGCTATGGAT+GGG | + | chr4_4:60809220-60809239 | Msa0692360:CDS | 40.0% | |
| TAGTATGACATCAAGCGCTA+TGG | + | chr4_4:60809296-60809315 | Msa0692360:CDS | 40.0% | |
| AGAGTTGAAGAATCACTTCC+CGG | + | chr4_4:60809332-60809351 | Msa0692360:CDS | 40.0% | |
| GGGATTCTACGACAAATATG+TGG | + | chr4_4:60809460-60809479 | Msa0692360:CDS | 40.0% | |
| AAAAACCTGAAGCTGCTGAA+TGG | + | chr4_4:60809613-60809632 | Msa0692360:CDS | 40.0% | |
| TTTGGAAAAGATCGAGCAAC+AGG | + | chr4_4:60809678-60809697 | Msa0692360:CDS | 40.0% | |
| ACAGGAGATCATGAAGATAC+AGG | + | chr4_4:60809696-60809715 | Msa0692360:CDS | 40.0% | |
| CTCAAGATGTGTCATCATCT+AGG | + | chr4_4:60809886-60809905 | Msa0692360:CDS | 40.0% | |
| ! | GGTGTTTAAAATGAGCTCAG+AGG | + | chr4_4:60809989-60810008 | Msa0692360:CDS | 40.0% |
| ! | GTGCTAATGGTGGAGATATT+TGG | + | chr4_4:60810033-60810052 | Msa0692360:CDS | 40.0% |
| TGGGCTGAATTAGTCGAAAT+TGG | + | chr4_4:60810053-60810072 | Msa0692360:CDS | 40.0% | |
| ATACTTTAGGCAAGGAAGCT+GGG | - | chr4_4:60810085-60810104 | None:intergenic | 40.0% | |
| TATACTTTAGGCAAGGAAGC+TGG | - | chr4_4:60810086-60810105 | None:intergenic | 40.0% | |
| ATCTTCCACTTTATAGCACC+AGG | - | chr4_4:60810447-60810466 | None:intergenic | 40.0% | |
| ! | CTTGGCTCTTATGTCTTCGT+TGG | - | chr4_4:60807642-60807661 | None:intergenic | 45.0% |
| TGCACCTTATTACGTGATCG+CGG | + | chr4_4:60807872-60807891 | Msa0692360:CDS | 45.0% | |
| GTGGACTTACACATACACGA+AGG | + | chr4_4:60807894-60807913 | Msa0692360:CDS | 45.0% | |
| AGATGCTTTGATAGAGGTGG+AGG | + | chr4_4:60808042-60808061 | Msa0692360:CDS | 45.0% | |
| GATGCTTTGATAGAGGTGGA+GGG | + | chr4_4:60808043-60808062 | Msa0692360:CDS | 45.0% | |
| ATGCTTTGATAGAGGTGGAG+GGG | + | chr4_4:60808044-60808063 | Msa0692360:CDS | 45.0% | |
| TGATGGTACACAAGTTCCTC+CGG | + | chr4_4:60808084-60808103 | Msa0692360:CDS | 45.0% | |
| TATCTAGGTGCAAGATGTGC+TGG | - | chr4_4:60808268-60808287 | None:intergenic | 45.0% | |
| CATCTTGCACCTAGATATCG+TGG | + | chr4_4:60808271-60808290 | Msa0692360:intron | 45.0% | |
| ! | GCAGCCAAGACATTTTGTGT+TGG | - | chr4_4:60808310-60808329 | None:intergenic | 45.0% |
| TATGTCTTGGTTGGATGGGA+AGG | + | chr4_4:60808355-60808374 | Msa0692360:intron | 45.0% | |
| TCACACCTTATAGGGGAGAA+AGG | + | chr4_4:60808570-60808589 | Msa0692360:intron | 45.0% | |
| TGGTACCTTTCTCCCCTATA+AGG | - | chr4_4:60808578-60808597 | None:intergenic | 45.0% | |
| ACTTCAACTGAGCCCACATT+TGG | + | chr4_4:60808725-60808744 | Msa0692360:intron | 45.0% | |
| GCCAATTAGAGATGACGTTG+CGG | + | chr4_4:60808925-60808944 | Msa0692360:CDS | 45.0% | |
| CCAATTAGAGATGACGTTGC+GGG | + | chr4_4:60808926-60808945 | Msa0692360:CDS | 45.0% | |
| AAGAGGCCAAGGAAATCCAA+AGG | + | chr4_4:60809183-60809202 | Msa0692360:CDS | 45.0% | |
| TCTAGGCCTTTGGATTTCCT+TGG | - | chr4_4:60809192-60809211 | None:intergenic | 45.0% | |
| TTGGACTACTGCTATGGATG+GGG | + | chr4_4:60809221-60809240 | Msa0692360:CDS | 45.0% | |
| ! | ATGGTTTGAGTGGATTCGGA+TGG | + | chr4_4:60809439-60809458 | Msa0692360:CDS | 45.0% |
| ! | TGGTTTGAGTGGATTCGGAT+GGG | + | chr4_4:60809440-60809459 | Msa0692360:CDS | 45.0% |
| GACTGCTGAAGATGACGTTT+GGG | + | chr4_4:60809482-60809501 | Msa0692360:CDS | 45.0% | |
| CAAGAAAGGCTGCAAATAGC+AGG | + | chr4_4:60809733-60809752 | Msa0692360:CDS | 45.0% | |
| ! | AGGCCTTTTCGGAGAAATGT+TGG | - | chr4_4:60809853-60809872 | None:intergenic | 45.0% |
| !! | CAGAGTAAGAGTGCTAATGG+TGG | + | chr4_4:60810023-60810042 | Msa0692360:CDS | 45.0% |
| !! | GTCATCCTGGTGCTATAAAG+TGG | + | chr4_4:60810439-60810458 | Msa0692360:three_prime_UTR | 45.0% |
| ACCTTATTACGTGATCGCGG+TGG | + | chr4_4:60807875-60807894 | Msa0692360:CDS | 50.0% | |
| TCCACCGCGATCACGTAATA+AGG | - | chr4_4:60807879-60807898 | None:intergenic | 50.0% | |
| GGAGGAACTTGTGTACCATC+AGG | - | chr4_4:60808085-60808104 | None:intergenic | 50.0% | |
| AATTCACGAGGGTTTCGAGG+TGG | - | chr4_4:60808623-60808642 | None:intergenic | 50.0% | |
| CCCGCAACGTCATCTCTAAT+TGG | - | chr4_4:60808929-60808948 | None:intergenic | 50.0% | |
| ATGACGTTGCGGGTTCTATG+TGG | + | chr4_4:60808936-60808955 | Msa0692360:intron | 50.0% | |
| GGACTGCTGAAGATGACGTT+TGG | + | chr4_4:60809481-60809500 | Msa0692360:CDS | 50.0% | |
| ! | CTGAAGATGACGTTTGGGAC+AGG | + | chr4_4:60809487-60809506 | Msa0692360:CDS | 50.0% |
| ! | CGTTTGGGACAGGCTAATTG+AGG | + | chr4_4:60809497-60809516 | Msa0692360:CDS | 50.0% |
| TGTCTCCATTCAGCAGCTTC+AGG | - | chr4_4:60809621-60809640 | None:intergenic | 50.0% | |
| GCTGCAAATAGCAGGAGTCA+TGG | + | chr4_4:60809741-60809760 | Msa0692360:CDS | 50.0% | |
| !! | GAGTCATGGTGCTACCATAG+AGG | + | chr4_4:60809755-60809774 | Msa0692360:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 60807635 | 60810579 | 60807635 | ID=Msa0692360;Name=Msa0692360 |
| chr4_4 | mRNA | 60807635 | 60810579 | 60807635 | ID=Msa0692360-mRNA-1;Parent=Msa0692360;Name=Msa0692360-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.5|0.4|1|1|1|5|365|534 |
| chr4_4 | exon | 60807635 | 60808144 | 60807635 | ID=Msa0692360-mRNA-1:exon:16723;Parent=Msa0692360-mRNA-1 |
| chr4_4 | exon | 60808220 | 60808249 | 60808220 | ID=Msa0692360-mRNA-1:exon:16724;Parent=Msa0692360-mRNA-1 |
| chr4_4 | exon | 60808845 | 60808947 | 60808845 | ID=Msa0692360-mRNA-1:exon:16725;Parent=Msa0692360-mRNA-1 |
| chr4_4 | exon | 60809160 | 60809518 | 60809160 | ID=Msa0692360-mRNA-1:exon:16726;Parent=Msa0692360-mRNA-1 |
| chr4_4 | exon | 60809612 | 60810579 | 60809612 | ID=Msa0692360-mRNA-1:exon:16727;Parent=Msa0692360-mRNA-1 |
| chr4_4 | CDS | 60807635 | 60808144 | 60807635 | ID=Msa0692360-mRNA-1:cds;Parent=Msa0692360-mRNA-1 |
| chr4_4 | CDS | 60808220 | 60808249 | 60808220 | ID=Msa0692360-mRNA-1:cds;Parent=Msa0692360-mRNA-1 |
| chr4_4 | CDS | 60808845 | 60808947 | 60808845 | ID=Msa0692360-mRNA-1:cds;Parent=Msa0692360-mRNA-1 |
| chr4_4 | CDS | 60809160 | 60809518 | 60809160 | ID=Msa0692360-mRNA-1:cds;Parent=Msa0692360-mRNA-1 |
| chr4_4 | CDS | 60809612 | 60810214 | 60809612 | ID=Msa0692360-mRNA-1:cds;Parent=Msa0692360-mRNA-1 |
| chr4_4 | three_prime_UTR | 60810215 | 60810579 | 60810215 | ID=Msa0692360-mRNA-1:three_prime_utr;Parent=Msa0692360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
