Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478130 | XP_013462064.1 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478130 | sp|Q94AA4|PFKA3_ARATH | 81.458 | 480 | 85 | 3 | 1 | 480 | 1 | 476 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478130 | A0A072V223 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009290 | Msa0478130 | 0.809401 | 1.926753e-50 | -8.615850e-47 |
| Msa0021400 | Msa0478130 | 0.813255 | 2.807168e-51 | -8.615850e-47 |
| Msa0029700 | Msa0478130 | 0.838500 | 2.771971e-57 | -8.615850e-47 |
| Msa0035740 | Msa0478130 | 0.802207 | 6.258492e-49 | -8.615850e-47 |
| Msa0051910 | Msa0478130 | 0.807644 | 4.570781e-50 | -8.615850e-47 |
| Msa0057000 | Msa0478130 | 0.802273 | 6.067716e-49 | -8.615850e-47 |
| Msa0072440 | Msa0478130 | 0.832320 | 1.011277e-55 | -8.615850e-47 |
| Msa0080020 | Msa0478130 | 0.846680 | 1.865453e-59 | -8.615850e-47 |
| Msa0098240 | Msa0478130 | 0.824274 | 8.819761e-54 | -8.615850e-47 |
| Msa0103830 | Msa0478130 | 0.812409 | 4.301975e-51 | -8.615850e-47 |
| Msa0110240 | Msa0478130 | 0.834981 | 2.188884e-56 | -8.615850e-47 |
| Msa0120860 | Msa0478130 | 0.830307 | 3.161303e-55 | -8.615850e-47 |
| Msa0124960 | Msa0478130 | 0.838517 | 2.743078e-57 | -8.615850e-47 |
| Msa0125860 | Msa0478130 | 0.803341 | 3.650265e-49 | -8.615850e-47 |
| Msa0127350 | Msa0478130 | -0.802147 | 6.440324e-49 | -8.615850e-47 |
| Msa0145050 | Msa0478130 | 0.811714 | 6.099112e-51 | -8.615850e-47 |
| Msa0154730 | Msa0478130 | 0.838609 | 2.597175e-57 | -8.615850e-47 |
| Msa0156530 | Msa0478130 | 0.806246 | 9.027337e-50 | -8.615850e-47 |
| Msa0173600 | Msa0478130 | -0.802141 | 6.459562e-49 | -8.615850e-47 |
| Msa0186190 | Msa0478130 | 0.906838 | 9.668956e-81 | -8.615850e-47 |
| Msa0227790 | Msa0478130 | 0.819607 | 1.062590e-52 | -8.615850e-47 |
| Msa0383930 | Msa0478130 | 0.939209 | 1.867790e-99 | -8.615850e-47 |
| Msa0384590 | Msa0478130 | 0.850182 | 2.003665e-60 | -8.615850e-47 |
| Msa0388210 | Msa0478130 | 0.818333 | 2.070043e-52 | -8.615850e-47 |
| Msa0434370 | Msa0478130 | 0.923720 | 1.830600e-89 | -8.615850e-47 |
| Msa0434660 | Msa0478130 | 0.839009 | 2.047343e-57 | -8.615850e-47 |
| Msa0478130 | Msa0478190 | 0.985893 | 5.284420e-165 | -8.615850e-47 |
| Msa0478130 | Msa0514540 | 0.816909 | 4.336610e-52 | -8.615850e-47 |
| Msa0478130 | Msa0522290 | 0.874000 | 9.502428e-68 | -8.615850e-47 |
| Msa0478130 | Msa0522540 | 0.839306 | 1.714623e-57 | -8.615850e-47 |
| Msa0478130 | Msa0548420 | 0.822821 | 1.929878e-53 | -8.615850e-47 |
| Msa0478130 | Msa0570600 | 0.805597 | 1.236495e-49 | -8.615850e-47 |
| Msa0478130 | Msa0603310 | 0.813727 | 2.211471e-51 | -8.615850e-47 |
| Msa0478130 | Msa0644340 | 0.813214 | 2.867034e-51 | -8.615850e-47 |
| Msa0478130 | Msa0655200 | 0.803977 | 2.694498e-49 | -8.615850e-47 |
| Msa0478130 | Msa0695140 | 0.815789 | 7.720440e-52 | -8.615850e-47 |
| Msa0478130 | Msa0707860 | -0.809974 | 1.450951e-50 | -8.615850e-47 |
| Msa0478130 | Msa0921860 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
| Msa0478130 | Msa0958830 | 0.828272 | 9.860825e-55 | -8.615850e-47 |
| Msa0478130 | Msa0970040 | 0.811384 | 7.193503e-51 | -8.615850e-47 |
| Msa0478130 | Msa1002970 | -0.802454 | 5.567193e-49 | -8.615850e-47 |
| Msa0478130 | Msa1026970 | 0.838020 | 3.684853e-57 | -8.615850e-47 |
| Msa0478130 | Msa1066770 | 0.806837 | 6.775226e-50 | -8.615850e-47 |
| Msa0478130 | Msa1088400 | -0.809369 | 1.958176e-50 | -8.615850e-47 |
| Msa0478130 | Msa1111900 | 0.852218 | 5.332999e-61 | -8.615850e-47 |
| Msa0478130 | Msa1133760 | 0.828704 | 7.754515e-55 | -8.615850e-47 |
| Msa0478130 | Msa1146010 | 0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa0478130 | Msa1146980 | 0.802482 | 5.494472e-49 | -8.615850e-47 |
| Msa0478130 | Msa1154310 | 0.844878 | 5.755538e-59 | -8.615850e-47 |
| Msa0478130 | Msa1197720 | 0.862615 | 4.470642e-64 | -8.615850e-47 |
| Msa0478130 | Msa1205270 | -0.800243 | 1.579484e-48 | -8.615850e-47 |
| Msa0478130 | Msa1251410 | 0.832374 | 9.805269e-56 | -8.615850e-47 |
| Msa0478130 | Msa1292140 | 0.803716 | 3.052573e-49 | -8.615850e-47 |
| Msa0478130 | Msa1361580 | -0.810876 | 9.267762e-51 | -8.615850e-47 |
| Msa0478130 | Msa1396110 | 0.803219 | 3.870353e-49 | -8.615850e-47 |
| Msa0478130 | Msa1403940 | 0.813142 | 2.972953e-51 | -8.615850e-47 |
| Msa0478130 | Msa1429810 | 0.801754 | 7.757410e-49 | -8.615850e-47 |
| Msa0478130 | Msa1434300 | 0.818070 | 2.374613e-52 | -8.615850e-47 |
| Msa0478130 | Msa1452560 | -0.811514 | 6.738400e-51 | -8.615850e-47 |
| Msa0258910 | Msa0478130 | 0.823307 | 1.486404e-53 | -8.615850e-47 |
| Msa0261480 | Msa0478130 | 0.835939 | 1.252643e-56 | -8.615850e-47 |
| Msa0298400 | Msa0478130 | 0.805934 | 1.050369e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478130 | MtrunA17_Chr3g0140611 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Msa0478130 | MtrunA17_Chr6g0487421 | 82.051 | 468 | 84 | 0 | 8 | 475 | 4 | 471 | 0.0 | 815 |
| Msa0478130 | MtrunA17_Chr8g0389631 | 82.301 | 452 | 79 | 1 | 7 | 457 | 6 | 457 | 0.0 | 792 |
| Msa0478130 | MtrunA17_Chr2g0330871 | 76.392 | 449 | 104 | 2 | 19 | 466 | 18 | 465 | 0.0 | 719 |
| Msa0478130 | MtrunA17_Chr1g0196891 | 72.383 | 449 | 123 | 1 | 16 | 464 | 82 | 529 | 0.0 | 700 |
| Msa0478130 | MtrunA17_Chr4g0076591 | 50.228 | 438 | 190 | 6 | 21 | 455 | 27 | 439 | 7.89e-151 | 438 |
| Msa0478130 | MtrunA17_Chr8g0367681 | 53.704 | 378 | 167 | 4 | 79 | 454 | 158 | 529 | 2.60e-134 | 399 |
| Msa0478130 | MtrunA17_Chr5g0412481 | 51.979 | 379 | 174 | 4 | 78 | 454 | 161 | 533 | 9.13e-132 | 393 |
| Msa0478130 | MtrunA17_Chr4g0030501 | 64.815 | 54 | 19 | 0 | 356 | 409 | 8 | 61 | 1.14e-17 | 78.2 |
| Msa0478130 | MtrunA17_Chr2g0289271 | 26.842 | 190 | 132 | 3 | 97 | 279 | 98 | 287 | 1.90e-11 | 66.6 |
| Msa0478130 | MtrunA17_Chr4g0075371 | 27.083 | 192 | 129 | 3 | 97 | 279 | 102 | 291 | 2.38e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478130 | AT4G26270.1 | 81.458 | 480 | 85 | 3 | 1 | 480 | 1 | 476 | 0.0 | 820 |
| Msa0478130 | AT5G56630.1 | 81.224 | 474 | 85 | 4 | 1 | 474 | 1 | 470 | 0.0 | 795 |
| Msa0478130 | AT4G29220.1 | 82.353 | 459 | 78 | 2 | 1 | 458 | 1 | 457 | 0.0 | 791 |
| Msa0478130 | AT4G32840.1 | 82.018 | 456 | 79 | 1 | 1 | 456 | 1 | 453 | 0.0 | 790 |
| Msa0478130 | AT5G61580.1 | 76.082 | 439 | 105 | 0 | 16 | 454 | 66 | 504 | 0.0 | 723 |
| Msa0478130 | AT5G61580.2 | 76.082 | 439 | 104 | 1 | 16 | 454 | 66 | 503 | 0.0 | 717 |
| Msa0478130 | AT5G47810.1 | 55.263 | 418 | 184 | 2 | 39 | 453 | 21 | 438 | 2.30e-167 | 481 |
| Msa0478130 | AT2G22480.1 | 53.968 | 378 | 166 | 4 | 79 | 454 | 166 | 537 | 5.97e-138 | 409 |
| Msa0478130 | AT4G04040.1 | 27.670 | 206 | 141 | 4 | 82 | 279 | 86 | 291 | 2.69e-12 | 69.7 |
| Msa0478130 | AT1G12000.1 | 27.083 | 192 | 129 | 3 | 97 | 279 | 100 | 289 | 4.25e-11 | 65.9 |
Find 148 sgRNAs with CRISPR-Local
Find 374 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCACCAAATACAATTT+TGG | 0.181586 | 3_3:-82599398 | None:intergenic |
| CGGCGATCTGCCGACGTGTC+TGG | 0.196570 | 3_3:-82593619 | None:intergenic |
| TACTTCAAGATGTTGGTTTA+TGG | 0.202635 | 3_3:+82597895 | Msa0478130:CDS |
| TTCAACATGTGCTGCATTAA+TGG | 0.206437 | 3_3:-82597425 | None:intergenic |
| CTTTATTTGATGAACATCTT+TGG | 0.232102 | 3_3:-82599183 | None:intergenic |
| TTGTATTCCAAAATTGTATT+TGG | 0.240105 | 3_3:+82599391 | Msa0478130:three_prime_UTR |
| GAATCGTTCCTCCACGCTTA+TGG | 0.286336 | 3_3:-82595495 | None:intergenic |
| TTTATTTGATGAACATCTTT+GGG | 0.300163 | 3_3:-82599182 | None:intergenic |
| TACCGGGATGTCATTATCTA+TGG | 0.300219 | 3_3:-82597221 | None:intergenic |
| CTTACTCAGCTGATTAAGTT+TGG | 0.303852 | 3_3:+82599602 | Msa0478130:three_prime_UTR |
| TGGATGTCATTGACCACTTT+AGG | 0.304572 | 3_3:-82595475 | None:intergenic |
| TTGGTTCAGGTTTATATCAT+TGG | 0.329391 | 3_3:+82595735 | Msa0478130:intron |
| TGTTTCCAGAAGCATCCTTC+TGG | 0.336049 | 3_3:-82597869 | None:intergenic |
| CAGGCAGTACTTTGTGCATA+TGG | 0.344963 | 3_3:+82594157 | Msa0478130:intron |
| CTTGCTCAGAGTGCAGTTCA+TGG | 0.350658 | 3_3:+82598673 | Msa0478130:CDS |
| ACCCTTCCCTTCAAGGTAGA+AGG | 0.353106 | 3_3:-82597736 | None:intergenic |
| GGTGCAATGGCTGGGTATAC+TGG | 0.356523 | 3_3:+82598694 | Msa0478130:CDS |
| CACAACGTTGTTCATCTTCT+CGG | 0.359054 | 3_3:-82599099 | None:intergenic |
| AAGCGTGGAGGAACGATTCT+TGG | 0.367428 | 3_3:+82595499 | Msa0478130:CDS |
| CTAAAACTCTTGTAGAGATA+AGG | 0.374950 | 3_3:-82599706 | None:intergenic |
| CCGACGTGTCTGGGTGGGTC+TGG | 0.375082 | 3_3:-82593609 | None:intergenic |
| GGATTAGATCGAAGTGGATT+AGG | 0.375412 | 3_3:-82594015 | None:intergenic |
| GCCATTGTTCTTAAATATAT+AGG | 0.384279 | 3_3:+82598496 | Msa0478130:CDS |
| AAAGTCCACCCTTCCCTTCA+AGG | 0.386654 | 3_3:-82597743 | None:intergenic |
| ATCTAGTAACTTACGTTGAA+TGG | 0.388848 | 3_3:-82598757 | None:intergenic |
| TCCCTTCTAACAACTGAGTC+AGG | 0.397166 | 3_3:-82599220 | None:intergenic |
| TCCCTGACTCAGTTGTTAGA+AGG | 0.398852 | 3_3:+82599218 | Msa0478130:CDS |
| GAAAGAGAAAGAAAGAAGAA+AGG | 0.399998 | 3_3:-82593704 | None:intergenic |
| CATTGGTGTTGTAAAGCTAA+TGG | 0.401351 | 3_3:+82597468 | Msa0478130:CDS |
| CGTCGAAAATGAACACCTCT+TGG | 0.402495 | 3_3:-82594724 | None:intergenic |
| CCTGATTAATTCCCCGATCC+TGG | 0.409242 | 3_3:-82595567 | None:intergenic |
| TTCATATAATGAAGTTTCAT+AGG | 0.409709 | 3_3:+82599502 | Msa0478130:three_prime_UTR |
| GGCGATCTGCCGACGTGTCT+GGG | 0.409791 | 3_3:-82593618 | None:intergenic |
| TAGGTTATCGACAGGTCCTT+TGG | 0.411323 | 3_3:+82597370 | Msa0478130:intron |
| ATTCCCACTCAGTTGATAGA+AGG | 0.412182 | 3_3:+82599287 | Msa0478130:CDS |
| AGTTGACAGCATCCAGGATC+GGG | 0.419001 | 3_3:+82595555 | Msa0478130:CDS |
| TATTCCAAAATTGTATTTGG+TGG | 0.424483 | 3_3:+82599394 | Msa0478130:three_prime_UTR |
| TTTACACAGGGTGGTTATAG+AGG | 0.429359 | 3_3:+82595421 | Msa0478130:intron |
| GCAGTTCATGGTGCAATGGC+TGG | 0.433123 | 3_3:+82598685 | Msa0478130:CDS |
| CCAGGATCGGGGAATTAATC+AGG | 0.433988 | 3_3:+82595567 | Msa0478130:CDS |
| GGGTATACTGGATTCACTGC+TGG | 0.434313 | 3_3:+82598706 | Msa0478130:CDS |
| TAGGTTGTTGTTCACAAAGA+TGG | 0.437604 | 3_3:+82594700 | Msa0478130:intron |
| GAGTCACCCTTCTACCTTGA+AGG | 0.442197 | 3_3:+82597729 | Msa0478130:CDS |
| CAGATCCAACTTACATGATC+CGG | 0.445131 | 3_3:+82598608 | Msa0478130:intron |
| ACATGTGGTGGTCTCTGCCC+TGG | 0.450770 | 3_3:+82594897 | Msa0478130:CDS |
| GATTCTTTAGAGTGAAGAAA+TGG | 0.453915 | 3_3:+82593801 | Msa0478130:exon |
| CTGGCCTCAACACTGTCATA+AGG | 0.454068 | 3_3:+82594916 | Msa0478130:CDS |
| ATGGACCAGAAGGATGCTTC+TGG | 0.455785 | 3_3:+82597864 | Msa0478130:CDS |
| GGTGTGTCTAATTAAAGTAC+TGG | 0.459268 | 3_3:+82599478 | Msa0478130:three_prime_UTR |
| TGGCCTCAACACTGTCATAA+GGG | 0.467515 | 3_3:+82594917 | Msa0478130:CDS |
| TTTATGAATTTATTACGAAA+AGG | 0.468687 | 3_3:+82597763 | Msa0478130:CDS |
| GTTTATATCATTGGAGGAGA+TGG | 0.470046 | 3_3:+82595744 | Msa0478130:CDS |
| TGGCGATGCTGGTTACATAC+TGG | 0.471787 | 3_3:+82593861 | Msa0478130:CDS |
| AAGATCGTCCATGGCGATGC+TGG | 0.471954 | 3_3:+82593850 | Msa0478130:CDS |
| AACAAGCTACTTCAAGATGT+TGG | 0.473799 | 3_3:+82597888 | Msa0478130:CDS |
| GGATGACACCGTTCCTCAAA+AGG | 0.474449 | 3_3:+82594178 | Msa0478130:CDS |
| CTTATGACAGTGTTGAGGCC+AGG | 0.477976 | 3_3:-82594915 | None:intergenic |
| ACGTGCAGGACCTCGACAAA+AGG | 0.478582 | 3_3:+82594744 | Msa0478130:CDS |
| TTCACTGCTGGACTTGTGAA+TGG | 0.485445 | 3_3:+82598718 | Msa0478130:CDS |
| AGCGTGGAGGAACGATTCTT+GGG | 0.486903 | 3_3:+82595500 | Msa0478130:CDS |
| AAAGAAGAAAGGAAAGAGAG+TGG | 0.487272 | 3_3:-82593693 | None:intergenic |
| TACTTAACAACCGAGTAAGC+TGG | 0.487814 | 3_3:-82594036 | None:intergenic |
| GCTGAAAGAAAGTGGACATA+TGG | 0.488751 | 3_3:+82597785 | Msa0478130:CDS |
| GGTCTGAAAGTAGCAATTGC+TGG | 0.489039 | 3_3:+82597187 | Msa0478130:CDS |
| ATCTGCCGACGTGTCTGGGT+GGG | 0.491065 | 3_3:-82593614 | None:intergenic |
| TCAAGGTAGAAGGGTGACTC+TGG | 0.491308 | 3_3:-82597726 | None:intergenic |
| CATTACTTTAACTCCTAAAG+TGG | 0.494917 | 3_3:+82595462 | Msa0478130:CDS |
| AAGCTAATGGGTCGTTATAG+TGG | 0.497189 | 3_3:+82597481 | Msa0478130:CDS |
| TCGATCTAATCCAGCTTACT+CGG | 0.498259 | 3_3:+82594026 | Msa0478130:CDS |
| GTTCAGGTTTATATCATTGG+AGG | 0.500202 | 3_3:+82595738 | Msa0478130:intron |
| GTCGAAAATGAACACCTCTT+GGG | 0.504803 | 3_3:-82594723 | None:intergenic |
| TTATGACAGTGTTGAGGCCA+GGG | 0.506099 | 3_3:-82594914 | None:intergenic |
| TACGGTGTCGACAAAGTCCT+TGG | 0.508087 | 3_3:+82594966 | Msa0478130:CDS |
| TAGAGTGAAGAAATGGCGTC+AGG | 0.520087 | 3_3:+82593808 | Msa0478130:exon |
| TCAAGAAATAAAATTAGATA+AGG | 0.522244 | 3_3:+82599366 | Msa0478130:exon |
| ATGCATTGCTTGGAATTGCC+CGG | 0.523008 | 3_3:-82598627 | None:intergenic |
| ATTGGTGTTGTAAAGCTAAT+GGG | 0.524626 | 3_3:+82597469 | Msa0478130:CDS |
| TGTTTGATTAGGTTATCGAC+AGG | 0.526843 | 3_3:+82597362 | Msa0478130:intron |
| GGGTCTGGACCGTTCGTGTG+TGG | 0.533568 | 3_3:-82593594 | None:intergenic |
| ACACTGTCTGATGCATTGCT+TGG | 0.537565 | 3_3:-82598637 | None:intergenic |
| TGGCAGTGAGGATGCGAAGA+AGG | 0.537731 | 3_3:+82599256 | Msa0478130:CDS |
| ATGGATATCTCATAAGATCA+AGG | 0.539762 | 3_3:+82597914 | Msa0478130:CDS |
| CCCTGACTCAGTTGTTAGAA+GGG | 0.543143 | 3_3:+82599219 | Msa0478130:CDS |
| ACCCTTCTACCTTGAAGGGA+AGG | 0.543653 | 3_3:+82597734 | Msa0478130:CDS |
| AGGAGCTGCTGTGATTTATG+AGG | 0.550657 | 3_3:+82595776 | Msa0478130:CDS |
| CCCTTCCCTTCAAGGTAGAA+GGG | 0.551850 | 3_3:-82597735 | None:intergenic |
| TAGTTGACAGCATCCAGGAT+CGG | 0.553341 | 3_3:+82595554 | Msa0478130:CDS |
| ATTGCCCGGATCATGTAAGT+TGG | 0.554329 | 3_3:-82598613 | None:intergenic |
| ACGAAAAGGCTGAAAGAAAG+TGG | 0.554398 | 3_3:+82597777 | Msa0478130:CDS |
| CAAGATAGTTGACAGCATCC+AGG | 0.555399 | 3_3:+82595549 | Msa0478130:CDS |
| TTCCCACTCAGTTGATAGAA+GGG | 0.555630 | 3_3:+82599288 | Msa0478130:CDS |
| ACGATTCTTGGGACATCCCG+AGG | 0.556156 | 3_3:+82595511 | Msa0478130:CDS |
| ATAGTTATAGCTGAGGGAGC+AGG | 0.560671 | 3_3:+82597810 | Msa0478130:CDS |
| AGATCCAACTTACATGATCC+GGG | 0.560914 | 3_3:+82598609 | Msa0478130:intron |
| TGTGGTCTTTCTTACATGTA+CGG | 0.563095 | 3_3:+82594948 | Msa0478130:CDS |
| AACCATAGATAATGACATCC+CGG | 0.563261 | 3_3:+82597219 | Msa0478130:CDS |
| CATGCAAGACATGGACCAGA+AGG | 0.565078 | 3_3:+82597854 | Msa0478130:CDS |
| CACTTTAGGAGTTAAAGTAA+TGG | 0.565776 | 3_3:-82595461 | None:intergenic |
| CGATTCTTGGGACATCCCGA+GGG | 0.578094 | 3_3:+82595512 | Msa0478130:CDS |
| TACAGAAAGCATGCAAGACA+TGG | 0.580338 | 3_3:+82597845 | Msa0478130:CDS |
| AGTCACCCTTCTACCTTGAA+GGG | 0.585876 | 3_3:+82597730 | Msa0478130:CDS |
| GAAGGGAGCAATTGCAATGG+TGG | 0.587091 | 3_3:+82599236 | Msa0478130:CDS |
| CAGTTCATGGTGCAATGGCT+GGG | 0.590436 | 3_3:+82598686 | Msa0478130:CDS |
| ACCTATATATTTAAGAACAA+TGG | 0.594094 | 3_3:-82598497 | None:intergenic |
| GCTTGTATTGTCACATGTGG+TGG | 0.594598 | 3_3:+82594885 | Msa0478130:CDS |
| CCCTTCTACCTTGAAGGGAA+GGG | 0.594930 | 3_3:+82597735 | Msa0478130:CDS |
| TTCTACCTTGAAGGGAAGGG+TGG | 0.595567 | 3_3:+82597738 | Msa0478130:CDS |
| TTGTGATTACTGACAGAATG+TGG | 0.596485 | 3_3:+82599117 | Msa0478130:CDS |
| GTATGTAACCAGCATCGCCA+TGG | 0.602485 | 3_3:-82593858 | None:intergenic |
| TCCCCTTCTATCAACTGAGT+GGG | 0.604482 | 3_3:-82599290 | None:intergenic |
| AGGAAGATTTGGAACGTAGT+CGG | 0.608157 | 3_3:-82593902 | None:intergenic |
| GTCAATGACATCCATAAGCG+TGG | 0.610080 | 3_3:+82595484 | Msa0478130:CDS |
| TTCTTGGGACATCCCGAGGG+GGG | 0.614995 | 3_3:+82595515 | Msa0478130:CDS |
| TCACAGATGAAGATCGTCCA+TGG | 0.624098 | 3_3:+82593841 | Msa0478130:CDS |
| GAAAGTGTTGAGAATGGCAT+TGG | 0.625093 | 3_3:+82597451 | Msa0478130:CDS |
| TTTCCCTTATGACAGTGTTG+AGG | 0.626794 | 3_3:-82594920 | None:intergenic |
| AGCCACTCACATCTATGCCA+AGG | 0.627188 | 3_3:-82594983 | None:intergenic |
| GAGTGCAGTTCATGGTGCAA+TGG | 0.628896 | 3_3:+82598681 | Msa0478130:CDS |
| ATTCTTGGGACATCCCGAGG+GGG | 0.629130 | 3_3:+82595514 | Msa0478130:CDS |
| GATCTGCCGACGTGTCTGGG+TGG | 0.630440 | 3_3:-82593615 | None:intergenic |
| ATTGCTTGTATTGTCACATG+TGG | 0.630601 | 3_3:+82594882 | Msa0478130:CDS |
| ATGGTCATAGTTATAGCTGA+GGG | 0.632087 | 3_3:+82597804 | Msa0478130:CDS |
| TACTCTTGCTAGTAGAGATG+TGG | 0.632402 | 3_3:+82597689 | Msa0478130:CDS |
| CCCTTCTAACAACTGAGTCA+GGG | 0.632890 | 3_3:-82599219 | None:intergenic |
| AACTGCGGTATCAAAACCAA+AGG | 0.633694 | 3_3:-82597386 | None:intergenic |
| GTCCCCTTCTATCAACTGAG+TGG | 0.636892 | 3_3:-82599291 | None:intergenic |
| TATGGTCATAGTTATAGCTG+AGG | 0.638112 | 3_3:+82597803 | Msa0478130:CDS |
| AGCTGATTAAGTTTGGCACA+AGG | 0.638717 | 3_3:+82599609 | Msa0478130:three_prime_UTR |
| GGAACGTAGTCGGAGAGATG+AGG | 0.638776 | 3_3:-82593892 | None:intergenic |
| GAAGCTGAAAGTGTTGAGAA+TGG | 0.642124 | 3_3:+82597445 | Msa0478130:CDS |
| CATCCATCTCCACACACGAA+CGG | 0.642556 | 3_3:+82593585 | None:intergenic |
| TCCCACTCAGTTGATAGAAG+GGG | 0.643504 | 3_3:+82599289 | Msa0478130:CDS |
| TTATCATACAGGAAGTTAGA+CGG | 0.646291 | 3_3:+82597161 | Msa0478130:intron |
| TAAGCTGGATTAGATCGAAG+TGG | 0.651196 | 3_3:-82594021 | None:intergenic |
| GTTGACAGCATCCAGGATCG+GGG | 0.664069 | 3_3:+82595556 | Msa0478130:CDS |
| GTTCACAAAGATGGCCCAAG+AGG | 0.667902 | 3_3:+82594709 | Msa0478130:CDS |
| GATTCTTGGGACATCCCGAG+GGG | 0.672975 | 3_3:+82595513 | Msa0478130:CDS |
| GTAAGAGACTACTTGTGTGA+AGG | 0.674286 | 3_3:-82599584 | None:intergenic |
| TTAGAAGGGAGCAATTGCAA+TGG | 0.676659 | 3_3:+82599233 | Msa0478130:CDS |
| TGCAACTGTCACTGTCAGCG+AGG | 0.681592 | 3_3:-82599343 | None:intergenic |
| GGAGGAGATGGAACACAGCG+AGG | 0.687653 | 3_3:+82595756 | Msa0478130:CDS |
| ATACAGGAAGTTAGACGGCG+AGG | 0.691856 | 3_3:+82597166 | Msa0478130:intron |
| ACGTTGAGCCTCCTCAACTG+CGG | 0.700198 | 3_3:-82597401 | None:intergenic |
| TGTGATTACTGACAGAATGT+GGG | 0.717274 | 3_3:+82599118 | Msa0478130:CDS |
| CAATTGCAATGGTGGCAGTG+AGG | 0.727536 | 3_3:+82599244 | Msa0478130:CDS |
| GTCATAAGGGAAATTGTGTG+TGG | 0.728717 | 3_3:+82594930 | Msa0478130:CDS |
| AATGACATCCATAAGCGTGG+AGG | 0.732879 | 3_3:+82595487 | Msa0478130:CDS |
| CCAGACCCACCCAGACACGT+CGG | 0.742227 | 3_3:+82593609 | Msa0478130:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAATATAAAAAAAC+TGG | - | chr3_3:82598353-82598372 | None:intergenic | 10.0% |
| !! | AAAAACCATAAATAAAAAAT+TGG | - | chr3_3:82599009-82599028 | None:intergenic | 10.0% |
| !!! | TACTATTTTTTCTTTGTTTT+TGG | - | chr3_3:82593765-82593784 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTTGTAAATTAC+TGG | + | chr3_3:82595132-82595151 | Msa0478130:intron | 15.0% |
| !! | TAATAGAATATTCCTTTATT+TGG | + | chr3_3:82595821-82595840 | Msa0478130:intron | 15.0% |
| !! | TACAGAATTCAAAATTAATT+TGG | - | chr3_3:82596017-82596036 | None:intergenic | 15.0% |
| !! | TCCTAAAAATTAAAAAGAAA+CGG | - | chr3_3:82596652-82596671 | None:intergenic | 15.0% |
| !! | AATGAAATAATAAATGATTC+GGG | - | chr3_3:82596749-82596768 | None:intergenic | 15.0% |
| !! | GAATGAAATAATAAATGATT+CGG | - | chr3_3:82596750-82596769 | None:intergenic | 15.0% |
| !! | ATTGAAATTTGAATATTACA+AGG | + | chr3_3:82596833-82596852 | Msa0478130:intron | 15.0% |
| !! | TTTATGAATTTATTACGAAA+AGG | + | chr3_3:82597763-82597782 | Msa0478130:CDS | 15.0% |
| !!! | TTATGCTATATAATTTGTTT+AGG | - | chr3_3:82598012-82598031 | None:intergenic | 15.0% |
| !! | TAAAAAAACTAATCCAAATA+GGG | - | chr3_3:82598136-82598155 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAGATGTAGAA+TGG | + | chr3_3:82598173-82598192 | Msa0478130:intron | 15.0% |
| !! | AAGTTGAATGTTTATTAAAA+GGG | - | chr3_3:82598439-82598458 | None:intergenic | 15.0% |
| !! | TCAAGAAATAAAATTAGATA+AGG | + | chr3_3:82599366-82599385 | Msa0478130:exon | 15.0% |
| !!! | TTTTTGGATTTTCGAATTAA+CGG | - | chr3_3:82593749-82593768 | None:intergenic | 20.0% |
| !! | CAAATGTAACTGAAAAAATT+GGG | - | chr3_3:82593948-82593967 | None:intergenic | 20.0% |
| !! | AAAAGTAGAAAATCAACATT+TGG | - | chr3_3:82594129-82594148 | None:intergenic | 20.0% |
| !!! | TTTAAAGTAACAAACATGAA+TGG | - | chr3_3:82594401-82594420 | None:intergenic | 20.0% |
| !!! | CTGAATGTTTGTTATTATTA+CGG | + | chr3_3:82594585-82594604 | Msa0478130:intron | 20.0% |
| !! | TTGAAAAGAAGAAAAAACAA+GGG | - | chr3_3:82596294-82596313 | None:intergenic | 20.0% |
| !! | TTTGAAAAGAAGAAAAAACA+AGG | - | chr3_3:82596295-82596314 | None:intergenic | 20.0% |
| !!! | TCCGTTTCTTTTTAATTTTT+AGG | + | chr3_3:82596648-82596667 | Msa0478130:intron | 20.0% |
| !! | ATGAAATAATAAATGATTCG+GGG | - | chr3_3:82596748-82596767 | None:intergenic | 20.0% |
| !! | AATTTGAATATTACAAGGAA+CGG | + | chr3_3:82596838-82596857 | Msa0478130:intron | 20.0% |
| !! | CAAAATAGAAAACATATGTA+CGG | - | chr3_3:82597067-82597086 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCGTGTTGTAA+TGG | + | chr3_3:82597632-82597651 | Msa0478130:intron | 20.0% |
| !!! | TATATAATTTGTTTAGGAAG+AGG | - | chr3_3:82598006-82598025 | None:intergenic | 20.0% |
| !! | AAAAAAACTAATCCAAATAG+GGG | - | chr3_3:82598135-82598154 | None:intergenic | 20.0% |
| !! | CTAAAAAAACTAATCCAAAT+AGG | - | chr3_3:82598137-82598156 | None:intergenic | 20.0% |
| !!! | CAAGTTGAATGTTTATTAAA+AGG | - | chr3_3:82598440-82598459 | None:intergenic | 20.0% |
| !! | ACCTATATATTTAAGAACAA+TGG | - | chr3_3:82598500-82598519 | None:intergenic | 20.0% |
| !! | TGTTATTGATATATATCAAG+TGG | + | chr3_3:82598832-82598851 | Msa0478130:intron | 20.0% |
| !! | ATAAAAAATTGGATGCAAAT+AGG | - | chr3_3:82598998-82599017 | None:intergenic | 20.0% |
| !!! | TGCATCCAATTTTTTATTTA+TGG | + | chr3_3:82599001-82599020 | Msa0478130:intron | 20.0% |
| !! | TTTATTTGATGAACATCTTT+GGG | - | chr3_3:82599185-82599204 | None:intergenic | 20.0% |
| !!! | AAATACAATTTTGGAATACA+AGG | - | chr3_3:82599392-82599411 | None:intergenic | 20.0% |
| !! | TTGTATTCCAAAATTGTATT+TGG | + | chr3_3:82599391-82599410 | Msa0478130:three_prime_UTR | 20.0% |
| !!! | AGGCTTATTTTTGTAAAATT+TGG | + | chr3_3:82599455-82599474 | Msa0478130:three_prime_UTR | 20.0% |
| !!! | GGCTTATTTTTGTAAAATTT+GGG | + | chr3_3:82599456-82599475 | Msa0478130:three_prime_UTR | 20.0% |
| !!! | GCTTATTTTTGTAAAATTTG+GGG | + | chr3_3:82599457-82599476 | Msa0478130:three_prime_UTR | 20.0% |
| !! | TTCATATAATGAAGTTTCAT+AGG | + | chr3_3:82599502-82599521 | Msa0478130:three_prime_UTR | 20.0% |
| !!! | TTACAGACATTTTATGAAAT+GGG | - | chr3_3:82599551-82599570 | None:intergenic | 20.0% |
| !!! | ATTACAGACATTTTATGAAA+TGG | - | chr3_3:82599552-82599571 | None:intergenic | 20.0% |
| !!! | GAAACGTTTGCTTATTTTTT+CGG | - | chr3_3:82593642-82593661 | None:intergenic | 25.0% |
| ! | GCAAATGTAACTGAAAAAAT+TGG | - | chr3_3:82593949-82593968 | None:intergenic | 25.0% |
| !! | TTTGGAATAACTAACACATT+TGG | - | chr3_3:82594111-82594130 | None:intergenic | 25.0% |
| !!! | TTTCTACTTTTTGTGATTTC+AGG | + | chr3_3:82594138-82594157 | Msa0478130:intron | 25.0% |
| ! | AATGAAGAAAATGAACAAAC+AGG | - | chr3_3:82594234-82594253 | None:intergenic | 25.0% |
| !! | GTAAGAAGACTTTTTAATGA+CGG | + | chr3_3:82594490-82594509 | Msa0478130:intron | 25.0% |
| ! | TACCTATACAACAATTTACT+AGG | - | chr3_3:82594841-82594860 | None:intergenic | 25.0% |
| !!! | CTCTTTTAACTTATTCTCAT+TGG | + | chr3_3:82595011-82595030 | Msa0478130:intron | 25.0% |
| !!! | TTCAATTACTTTTGTCCATT+TGG | - | chr3_3:82595223-82595242 | None:intergenic | 25.0% |
| ! | TAAAATTAGATATAGCTCAG+TGG | - | chr3_3:82595405-82595424 | None:intergenic | 25.0% |
| !! | AGCTATATCTAATTTTACAC+AGG | + | chr3_3:82595408-82595427 | Msa0478130:intron | 25.0% |
| !! | GCTATATCTAATTTTACACA+GGG | + | chr3_3:82595409-82595428 | Msa0478130:intron | 25.0% |
| !! | TTGGAAACTTTTGTAGAATA+TGG | - | chr3_3:82595614-82595633 | None:intergenic | 25.0% |
| !! | ATATCAATGTTAACTTGAGT+AGG | + | chr3_3:82595676-82595695 | Msa0478130:intron | 25.0% |
| ! | TCTTCACAATACAATTGATT+AGG | + | chr3_3:82595987-82596006 | Msa0478130:intron | 25.0% |
| ! | CATTTAAATAAGTTACTGAC+AGG | + | chr3_3:82596133-82596152 | Msa0478130:intron | 25.0% |
| !!! | CCATTCAAATTTCACTTTTA+TGG | - | chr3_3:82596497-82596516 | None:intergenic | 25.0% |
| ! | CCATAAAAGTGAAATTTGAA+TGG | + | chr3_3:82596494-82596513 | Msa0478130:intron | 25.0% |
| !! | TGTATATGATTTTCACTTGA+AGG | - | chr3_3:82596536-82596555 | None:intergenic | 25.0% |
| !! | GCATTTGAAGTTTAAGATTA+AGG | - | chr3_3:82596560-82596579 | None:intergenic | 25.0% |
| ! | GTAGATATATAACAAGGAAA+CGG | - | chr3_3:82596586-82596605 | None:intergenic | 25.0% |
| ! | ACTTCAGTAGATATATAACA+AGG | - | chr3_3:82596592-82596611 | None:intergenic | 25.0% |
| !! | TGAACATAATCGTGAATTTT+TGG | + | chr3_3:82596615-82596634 | Msa0478130:intron | 25.0% |
| ! | AATTAAAAAGAAACGGATAG+TGG | - | chr3_3:82596645-82596664 | None:intergenic | 25.0% |
| !!! | ACAAAATTTGTTGATCATCT+TGG | - | chr3_3:82596688-82596707 | None:intergenic | 25.0% |
| ! | AAATATTGAAAAGGAACAGT+GGG | + | chr3_3:82596904-82596923 | Msa0478130:intron | 25.0% |
| !! | ATGTCATTATCTATGGTTTT+TGG | - | chr3_3:82597217-82597236 | None:intergenic | 25.0% |
| !!! | GATTAGTTTTTTTAGCAGAT+GGG | + | chr3_3:82598142-82598161 | Msa0478130:intron | 25.0% |
| !! | TATTTAGTATCTTCTGAAAG+TGG | - | chr3_3:82598279-82598298 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTGTGCATTGAG+TGG | - | chr3_3:82598312-82598331 | None:intergenic | 25.0% |
| ! | GCCATTGTTCTTAAATATAT+AGG | + | chr3_3:82598496-82598515 | Msa0478130:CDS | 25.0% |
| ! | ATACAACGAATAGATCAAAA+TGG | - | chr3_3:82598547-82598566 | None:intergenic | 25.0% |
| ! | AAAACGAACTTGATTTATAC+AGG | - | chr3_3:82598932-82598951 | None:intergenic | 25.0% |
| !! | CTTTATTTGATGAACATCTT+TGG | - | chr3_3:82599186-82599205 | None:intergenic | 25.0% |
| ! | TATTCCAAAATTGTATTTGG+TGG | + | chr3_3:82599394-82599413 | Msa0478130:three_prime_UTR | 25.0% |
| GAAAGAGAAAGAAAGAAGAA+AGG | - | chr3_3:82593707-82593726 | None:intergenic | 30.0% | |
| !! | GATTCTTTAGAGTGAAGAAA+TGG | + | chr3_3:82593801-82593820 | Msa0478130:exon | 30.0% |
| GAGAAAAATACAGGAAGATT+TGG | - | chr3_3:82593916-82593935 | None:intergenic | 30.0% | |
| AGAAAGAGAGAGAAAAATAC+AGG | - | chr3_3:82593925-82593944 | None:intergenic | 30.0% | |
| !! | ATATAGAACCTTTTGAGGAA+CGG | - | chr3_3:82594189-82594208 | None:intergenic | 30.0% |
| ! | AACAGATATAGAACCTTTTG+AGG | - | chr3_3:82594194-82594213 | None:intergenic | 30.0% |
| CATCAGTTAGTAATCAATCA+AGG | - | chr3_3:82594532-82594551 | None:intergenic | 30.0% | |
| ACTAACTGATGCTTACATTA+AGG | + | chr3_3:82594541-82594560 | Msa0478130:intron | 30.0% | |
| TTTACTGAAATCAGAGAAAG+AGG | + | chr3_3:82594615-82594634 | Msa0478130:intron | 30.0% | |
| ! | TTGTTTGTACACGTGTTATT+AGG | + | chr3_3:82594779-82594798 | Msa0478130:intron | 30.0% |
| GACCTAGTAAATTGTTGTAT+AGG | + | chr3_3:82594836-82594855 | Msa0478130:intron | 30.0% | |
| ! | CATTACATTATTTGTTGCTC+TGG | + | chr3_3:82595035-82595054 | Msa0478130:intron | 30.0% |
| TTCACAAATGGAAAAGGATA+TGG | - | chr3_3:82595192-82595211 | None:intergenic | 30.0% | |
| ! | TATCCTTTTCCATTTGTGAA+AGG | + | chr3_3:82595192-82595211 | Msa0478130:intron | 30.0% |
| !!! | CACTTTACTTTTTGTCACAT+CGG | + | chr3_3:82595339-82595358 | Msa0478130:intron | 30.0% |
| AGTTGCATTTCTTGATTCAT+TGG | + | chr3_3:82595374-82595393 | Msa0478130:intron | 30.0% | |
| ! | ATATCTAATTTTACACAGGG+TGG | + | chr3_3:82595412-82595431 | Msa0478130:intron | 30.0% |
| ! | CACTTTAGGAGTTAAAGTAA+TGG | - | chr3_3:82595464-82595483 | None:intergenic | 30.0% |
| CATTACTTTAACTCCTAAAG+TGG | + | chr3_3:82595462-82595481 | Msa0478130:CDS | 30.0% | |
| TTTCCAATGATACTGAATGA+TGG | + | chr3_3:82595627-82595646 | Msa0478130:intron | 30.0% | |
| ATTCCATCATTCAGTATCAT+TGG | - | chr3_3:82595633-82595652 | None:intergenic | 30.0% | |
| !! | ATTTTCACTGTTTGGGTTAT+TGG | + | chr3_3:82595716-82595735 | Msa0478130:intron | 30.0% |
| ! | TTGGTTCAGGTTTATATCAT+TGG | + | chr3_3:82595735-82595754 | Msa0478130:intron | 30.0% |
| !!! | TATGCTCTTATTTTCCTTAC+TGG | - | chr3_3:82595850-82595869 | None:intergenic | 30.0% |
| ! | CTTTAGCTCAAATTTGGAAA+AGG | - | chr3_3:82596178-82596197 | None:intergenic | 30.0% |
| ! | CAACAACTTTAGCTCAAATT+TGG | - | chr3_3:82596184-82596203 | None:intergenic | 30.0% |
| CAAATTTGAGCTAAAGTTGT+TGG | + | chr3_3:82596182-82596201 | Msa0478130:intron | 30.0% | |
| AAGAAGAAAAAACAAGGGAA+GGG | - | chr3_3:82596289-82596308 | None:intergenic | 30.0% | |
| AAAGAAGAAAAAACAAGGGA+AGG | - | chr3_3:82596290-82596309 | None:intergenic | 30.0% | |
| TTTGGAAATAAGAAAGAACC+GGG | - | chr3_3:82596451-82596470 | None:intergenic | 30.0% | |
| GTTTGGAAATAAGAAAGAAC+CGG | - | chr3_3:82596452-82596471 | None:intergenic | 30.0% | |
| ATATATAACAAGGAAACGGA+AGG | - | chr3_3:82596582-82596601 | None:intergenic | 30.0% | |
| ! | ATTCGGGGTATTATAAGAAA+GGG | - | chr3_3:82596733-82596752 | None:intergenic | 30.0% |
| TTCTCTTTGCAATAAATCAC+TGG | + | chr3_3:82596777-82596796 | Msa0478130:intron | 30.0% | |
| TCTCTTTGCAATAAATCACT+GGG | + | chr3_3:82596778-82596797 | Msa0478130:intron | 30.0% | |
| !!! | AACCGAGGAACATAATTTTT+TGG | + | chr3_3:82596874-82596893 | Msa0478130:intron | 30.0% |
| TGCCAAAAAATTATGTTCCT+CGG | - | chr3_3:82596879-82596898 | None:intergenic | 30.0% | |
| GGCAAATGCAAATATTGAAA+AGG | + | chr3_3:82596895-82596914 | Msa0478130:intron | 30.0% | |
| CAAATATTGAAAAGGAACAG+TGG | + | chr3_3:82596903-82596922 | Msa0478130:intron | 30.0% | |
| ACTACATTAGTGCAATATGT+TGG | + | chr3_3:82596935-82596954 | Msa0478130:intron | 30.0% | |
| !! | CAATATGTTGGTTTCCAAAA+AGG | + | chr3_3:82596947-82596966 | Msa0478130:intron | 30.0% |
| ! | TTCTTGGCATCTTTTTAACA+TGG | + | chr3_3:82597111-82597130 | Msa0478130:intron | 30.0% |
| ! | TCTTGGCATCTTTTTAACAT+GGG | + | chr3_3:82597112-82597131 | Msa0478130:intron | 30.0% |
| ! | TAAGCATTCTGAGCATATTT+TGG | + | chr3_3:82597138-82597157 | Msa0478130:intron | 30.0% |
| !!! | GCATATTTTGGTTATCATAC+AGG | + | chr3_3:82597150-82597169 | Msa0478130:intron | 30.0% |
| TTATCATACAGGAAGTTAGA+CGG | + | chr3_3:82597161-82597180 | Msa0478130:intron | 30.0% | |
| ! | TAACCTTGTCATTTGAGTTA+CGG | + | chr3_3:82597283-82597302 | Msa0478130:intron | 30.0% |
| ! | CGTTTTTCTTCTGTTTGATT+AGG | + | chr3_3:82597351-82597370 | Msa0478130:intron | 30.0% |
| !! | ATTGGTGTTGTAAAGCTAAT+GGG | + | chr3_3:82597469-82597488 | Msa0478130:CDS | 30.0% |
| !! | TACTTCAAGATGTTGGTTTA+TGG | + | chr3_3:82597895-82597914 | Msa0478130:CDS | 30.0% |
| ATGGATATCTCATAAGATCA+AGG | + | chr3_3:82597914-82597933 | Msa0478130:CDS | 30.0% | |
| TTAACTAGTTAACCTGTAGT+TGG | - | chr3_3:82598086-82598105 | None:intergenic | 30.0% | |
| !!! | GGATTAGTTTTTTTAGCAGA+TGG | + | chr3_3:82598141-82598160 | Msa0478130:intron | 30.0% |
| !! | AACATTCAACTTGCTGAAAT+AGG | + | chr3_3:82598447-82598466 | Msa0478130:intron | 30.0% |
| ! | GAAATAGGATCATTTTGCAA+AGG | + | chr3_3:82598462-82598481 | Msa0478130:intron | 30.0% |
| ! | TTTTGCAAAGGAGAATAAGA+TGG | + | chr3_3:82598474-82598493 | Msa0478130:CDS | 30.0% |
| TATGGCTAGATTTCTTAACT+GGG | + | chr3_3:82598577-82598596 | Msa0478130:intron | 30.0% | |
| ATCTAGTAACTTACGTTGAA+TGG | - | chr3_3:82598760-82598779 | None:intergenic | 30.0% | |
| TGCACAATAACAAATGCTTA+AGG | + | chr3_3:82598970-82598989 | Msa0478130:intron | 30.0% | |
| ! | AACTCCACCAAATACAATTT+TGG | - | chr3_3:82599401-82599420 | None:intergenic | 30.0% |
| CTAAAACTCTTGTAGAGATA+AGG | - | chr3_3:82599709-82599728 | None:intergenic | 30.0% | |
| AAAGAAGAAAGGAAAGAGAG+TGG | - | chr3_3:82593696-82593715 | None:intergenic | 35.0% | |
| ACATGAATGGTTGTGATTTG+CGG | - | chr3_3:82594388-82594407 | None:intergenic | 35.0% | |
| ACTTTATTGTCCCTTTCCAT+AGG | + | chr3_3:82594681-82594700 | Msa0478130:intron | 35.0% | |
| TGAACAACAACCTATGGAAA+GGG | - | chr3_3:82594694-82594713 | None:intergenic | 35.0% | |
| TCTTTGTGAACAACAACCTA+TGG | - | chr3_3:82594700-82594719 | None:intergenic | 35.0% | |
| ! | TAGGTTGTTGTTCACAAAGA+TGG | + | chr3_3:82594700-82594719 | Msa0478130:intron | 35.0% |
| ATTGCTTGTATTGTCACATG+TGG | + | chr3_3:82594882-82594901 | Msa0478130:CDS | 35.0% | |
| TGTGGTCTTTCTTACATGTA+CGG | + | chr3_3:82594948-82594967 | Msa0478130:CDS | 35.0% | |
| ATGCCTTTCACAAATGGAAA+AGG | - | chr3_3:82595198-82595217 | None:intergenic | 35.0% | |
| GAGTGAACTAAACAAACCTT+TGG | + | chr3_3:82595292-82595311 | Msa0478130:intron | 35.0% | |
| CGATGTGACAAAAAGTAAAG+TGG | - | chr3_3:82595341-82595360 | None:intergenic | 35.0% | |
| AGTAGGTTATTGTCATGACA+TGG | + | chr3_3:82595693-82595712 | Msa0478130:intron | 35.0% | |
| ! | TGACATGGATTTTCACTGTT+TGG | + | chr3_3:82595708-82595727 | Msa0478130:intron | 35.0% |
| ! | GACATGGATTTTCACTGTTT+GGG | + | chr3_3:82595709-82595728 | Msa0478130:intron | 35.0% |
| ! | GTTCAGGTTTATATCATTGG+AGG | + | chr3_3:82595738-82595757 | Msa0478130:intron | 35.0% |
| GTTTATATCATTGGAGGAGA+TGG | + | chr3_3:82595744-82595763 | Msa0478130:CDS | 35.0% | |
| CCTTACTGGAATCCAAATAA+AGG | - | chr3_3:82595836-82595855 | None:intergenic | 35.0% | |
| ! | CCTTTATTTGGATTCCAGTA+AGG | + | chr3_3:82595833-82595852 | Msa0478130:intron | 35.0% |
| ! | TGCAAATGATGATAGTGTAG+TGG | + | chr3_3:82596318-82596337 | Msa0478130:intron | 35.0% |
| GTTAGTTAACCAATGTCTTC+TGG | + | chr3_3:82596346-82596365 | Msa0478130:intron | 35.0% | |
| AAACAGTTTCCAGAAGACAT+TGG | - | chr3_3:82596358-82596377 | None:intergenic | 35.0% | |
| TTGGAAATAAGAAAGAACCG+GGG | - | chr3_3:82596450-82596469 | None:intergenic | 35.0% | |
| ! | ATGATTTTCACTTGAAGGCA+TGG | - | chr3_3:82596531-82596550 | None:intergenic | 35.0% |
| ! | GATTCGGGGTATTATAAGAA+AGG | - | chr3_3:82596734-82596753 | None:intergenic | 35.0% |
| CTCTTTGCAATAAATCACTG+GGG | + | chr3_3:82596779-82596798 | Msa0478130:intron | 35.0% | |
| TCTTTGCAATAAATCACTGG+GGG | + | chr3_3:82596780-82596799 | Msa0478130:intron | 35.0% | |
| TTGAATATTACAAGGAACGG+AGG | + | chr3_3:82596841-82596860 | Msa0478130:intron | 35.0% | |
| GGAGGAATTAAAAATAACCG+AGG | + | chr3_3:82596859-82596878 | Msa0478130:intron | 35.0% | |
| !! | TATGTTGGTTTCCAAAAAGG+TGG | + | chr3_3:82596950-82596969 | Msa0478130:intron | 35.0% |
| ! | TTCCAAAAAGGTGGTTTGTA+TGG | + | chr3_3:82596959-82596978 | Msa0478130:intron | 35.0% |
| ! | AACCATACAAACCACCTTTT+TGG | - | chr3_3:82596964-82596983 | None:intergenic | 35.0% |
| ! | AAAAGGTGGTTTGTATGGTT+CGG | + | chr3_3:82596964-82596983 | Msa0478130:intron | 35.0% |
| ! | TAGGTCAAGCTTTATGTTCA+AGG | + | chr3_3:82597007-82597026 | Msa0478130:intron | 35.0% |
| TTTATGTTCAAGGAACAGCT+GGG | + | chr3_3:82597017-82597036 | Msa0478130:intron | 35.0% | |
| !! | GATTGACTTGTTATCGTTCT+TGG | + | chr3_3:82597095-82597114 | Msa0478130:intron | 35.0% |
| AACCATAGATAATGACATCC+CGG | + | chr3_3:82597219-82597238 | Msa0478130:CDS | 35.0% | |
| AAATGACAAGGTTAGAGTTC+TGG | - | chr3_3:82597277-82597296 | None:intergenic | 35.0% | |
| TAACCGTAACTCAAATGACA+AGG | - | chr3_3:82597289-82597308 | None:intergenic | 35.0% | |
| TGTTTGATTAGGTTATCGAC+AGG | + | chr3_3:82597362-82597381 | Msa0478130:intron | 35.0% | |
| TTCAACATGTGCTGCATTAA+TGG | - | chr3_3:82597428-82597447 | None:intergenic | 35.0% | |
| !! | CATTGGTGTTGTAAAGCTAA+TGG | + | chr3_3:82597468-82597487 | Msa0478130:CDS | 35.0% |
| TAGGGTTCAATTAAACTCAG+AGG | - | chr3_3:82597550-82597569 | None:intergenic | 35.0% | |
| !! | GTAATGGATTCTATAACTGC+AGG | + | chr3_3:82597648-82597667 | Msa0478130:intron | 35.0% |
| TATGGTCATAGTTATAGCTG+AGG | + | chr3_3:82597803-82597822 | Msa0478130:CDS | 35.0% | |
| ATGGTCATAGTTATAGCTGA+GGG | + | chr3_3:82597804-82597823 | Msa0478130:CDS | 35.0% | |
| AACAAGCTACTTCAAGATGT+TGG | + | chr3_3:82597888-82597907 | Msa0478130:CDS | 35.0% | |
| GTTGTTTGTGTATATCTACG+AGG | + | chr3_3:82598033-82598052 | Msa0478130:intron | 35.0% | |
| TACGAGGAATTAAGAACTCA+AGG | + | chr3_3:82598049-82598068 | Msa0478130:intron | 35.0% | |
| GATTCATTGATACCCCTATT+TGG | + | chr3_3:82598120-82598139 | Msa0478130:intron | 35.0% | |
| CGAATAGATCAAAATGGAAG+AGG | - | chr3_3:82598541-82598560 | None:intergenic | 35.0% | |
| CGTTGTATCTTAGACTACTA+TGG | + | chr3_3:82598559-82598578 | Msa0478130:intron | 35.0% | |
| CTATGGCTAGATTTCTTAAC+TGG | + | chr3_3:82598576-82598595 | Msa0478130:intron | 35.0% | |
| TCAGATTATAAAACTGTGCG+AGG | - | chr3_3:82598785-82598804 | None:intergenic | 35.0% | |
| ATATGCTACTGTTGTTGAGA+TGG | + | chr3_3:82598894-82598913 | Msa0478130:intron | 35.0% | |
| TTGTGATTACTGACAGAATG+TGG | + | chr3_3:82599117-82599136 | Msa0478130:CDS | 35.0% | |
| TGTGATTACTGACAGAATGT+GGG | + | chr3_3:82599118-82599137 | Msa0478130:CDS | 35.0% | |
| ! | TCTTTGGGTTTCAAAAAGCT+TGG | - | chr3_3:82599170-82599189 | None:intergenic | 35.0% |
| ! | GAAGTTTTGCTGGAATGATT+AGG | + | chr3_3:82599435-82599454 | Msa0478130:three_prime_UTR | 35.0% |
| GGTGTGTCTAATTAAAGTAC+TGG | + | chr3_3:82599478-82599497 | Msa0478130:three_prime_UTR | 35.0% | |
| CTTACTCAGCTGATTAAGTT+TGG | + | chr3_3:82599602-82599621 | Msa0478130:three_prime_UTR | 35.0% | |
| ! | AGGAAGATTTGGAACGTAGT+CGG | - | chr3_3:82593905-82593924 | None:intergenic | 40.0% |
| ! | GGATTAGATCGAAGTGGATT+AGG | - | chr3_3:82594018-82594037 | None:intergenic | 40.0% |
| ! | TAAGCTGGATTAGATCGAAG+TGG | - | chr3_3:82594024-82594043 | None:intergenic | 40.0% |
| TCGATCTAATCCAGCTTACT+CGG | + | chr3_3:82594026-82594045 | Msa0478130:CDS | 40.0% | |
| TACTTAACAACCGAGTAAGC+TGG | - | chr3_3:82594039-82594058 | None:intergenic | 40.0% | |
| ATGCATAGTAAACACGATCG+AGG | - | chr3_3:82594264-82594283 | None:intergenic | 40.0% | |
| GTGAACAACAACCTATGGAA+AGG | - | chr3_3:82594695-82594714 | None:intergenic | 40.0% | |
| GTCGAAAATGAACACCTCTT+GGG | - | chr3_3:82594726-82594745 | None:intergenic | 40.0% | |
| ! | AGCGAAATAACCTTTTGTCG+AGG | - | chr3_3:82594757-82594776 | None:intergenic | 40.0% |
| TTTCCCTTATGACAGTGTTG+AGG | - | chr3_3:82594923-82594942 | None:intergenic | 40.0% | |
| GTCATAAGGGAAATTGTGTG+TGG | + | chr3_3:82594930-82594949 | Msa0478130:CDS | 40.0% | |
| GTGAAGTACATCTTTGTCTC+TGG | + | chr3_3:82595102-82595121 | Msa0478130:intron | 40.0% | |
| TTTGCACAAGTTTGGAAACC+TGG | + | chr3_3:82595165-82595184 | Msa0478130:intron | 40.0% | |
| AATGGAAAAGGATATGGTCC+AGG | - | chr3_3:82595186-82595205 | None:intergenic | 40.0% | |
| TTGGTCATGCCTTTCACAAA+TGG | - | chr3_3:82595204-82595223 | None:intergenic | 40.0% | |
| ! | TTGTGAAAGGCATGACCAAA+TGG | + | chr3_3:82595205-82595224 | Msa0478130:intron | 40.0% |
| AGTGACTTCACGAAAACCAA+AGG | - | chr3_3:82595311-82595330 | None:intergenic | 40.0% | |
| TTTACACAGGGTGGTTATAG+AGG | + | chr3_3:82595421-82595440 | Msa0478130:intron | 40.0% | |
| TGGATGTCATTGACCACTTT+AGG | - | chr3_3:82595478-82595497 | None:intergenic | 40.0% | |
| !! | ACTGTTTGGGTTATTGGTTC+AGG | + | chr3_3:82595722-82595741 | Msa0478130:intron | 40.0% |
| CTGCTGTGATTTATGAGGTA+TGG | + | chr3_3:82595781-82595800 | Msa0478130:intron | 40.0% | |
| TATGAGGTATGGTGATTCAG+AGG | + | chr3_3:82595792-82595811 | Msa0478130:intron | 40.0% | |
| TATCAGTGCTATCTCTGTGA+GGG | - | chr3_3:82596092-82596111 | None:intergenic | 40.0% | |
| TTATCAGTGCTATCTCTGTG+AGG | - | chr3_3:82596093-82596112 | None:intergenic | 40.0% | |
| GTTGGTTGACTAATGTCTTC+TGG | + | chr3_3:82596200-82596219 | Msa0478130:intron | 40.0% | |
| !! | GACTAATGTCTTCTGGAATG+TGG | + | chr3_3:82596207-82596226 | Msa0478130:intron | 40.0% |
| AGAAAAAACAAGGGAAGGGT+GGG | - | chr3_3:82596285-82596304 | None:intergenic | 40.0% | |
| AAGAAAAAACAAGGGAAGGG+TGG | - | chr3_3:82596286-82596305 | None:intergenic | 40.0% | |
| TGGAAATAAGAAAGAACCGG+GGG | - | chr3_3:82596449-82596468 | None:intergenic | 40.0% | |
| CATAAAGCTTGACCTATCAG+AGG | - | chr3_3:82597003-82597022 | None:intergenic | 40.0% | |
| CTTTATGTTCAAGGAACAGC+TGG | + | chr3_3:82597016-82597035 | Msa0478130:intron | 40.0% | |
| TACCGGGATGTCATTATCTA+TGG | - | chr3_3:82597224-82597243 | None:intergenic | 40.0% | |
| ACATAGAGATTGAGCATACC+GGG | - | chr3_3:82597240-82597259 | None:intergenic | 40.0% | |
| GACATAGAGATTGAGCATAC+CGG | - | chr3_3:82597241-82597260 | None:intergenic | 40.0% | |
| TACGGTTACATCTGATGAGT+CGG | + | chr3_3:82597301-82597320 | Msa0478130:intron | 40.0% | |
| AACTGCGGTATCAAAACCAA+AGG | - | chr3_3:82597389-82597408 | None:intergenic | 40.0% | |
| !! | GAAGCTGAAAGTGTTGAGAA+TGG | + | chr3_3:82597445-82597464 | Msa0478130:CDS | 40.0% |
| !! | GAAAGTGTTGAGAATGGCAT+TGG | + | chr3_3:82597451-82597470 | Msa0478130:CDS | 40.0% |
| ! | AAGCTAATGGGTCGTTATAG+TGG | + | chr3_3:82597481-82597500 | Msa0478130:CDS | 40.0% |
| TACTCTTGCTAGTAGAGATG+TGG | + | chr3_3:82597689-82597708 | Msa0478130:CDS | 40.0% | |
| ACGAAAAGGCTGAAAGAAAG+TGG | + | chr3_3:82597777-82597796 | Msa0478130:CDS | 40.0% | |
| GCTGAAAGAAAGTGGACATA+TGG | + | chr3_3:82597785-82597804 | Msa0478130:CDS | 40.0% | |
| ! | TACAGAAAGCATGCAAGACA+TGG | + | chr3_3:82597845-82597864 | Msa0478130:CDS | 40.0% |
| GAGGAATTAAGAACTCAAGG+AGG | + | chr3_3:82598052-82598071 | Msa0478130:intron | 40.0% | |
| ! | GTATCTTCTGAAAGTGGAGA+AGG | - | chr3_3:82598273-82598292 | None:intergenic | 40.0% |
| CAGATCCAACTTACATGATC+CGG | + | chr3_3:82598608-82598627 | Msa0478130:intron | 40.0% | |
| AGATCCAACTTACATGATCC+GGG | + | chr3_3:82598609-82598628 | Msa0478130:intron | 40.0% | |
| CACAACGTTGTTCATCTTCT+CGG | - | chr3_3:82599102-82599121 | None:intergenic | 40.0% | |
| TTAGAAGGGAGCAATTGCAA+TGG | + | chr3_3:82599233-82599252 | Msa0478130:CDS | 40.0% | |
| !! | ATTCCCACTCAGTTGATAGA+AGG | + | chr3_3:82599287-82599306 | Msa0478130:CDS | 40.0% |
| !! | TTCCCACTCAGTTGATAGAA+GGG | + | chr3_3:82599288-82599307 | Msa0478130:CDS | 40.0% |
| ! | GTGACATGATGAAGTTTTGC+TGG | + | chr3_3:82599425-82599444 | Msa0478130:three_prime_UTR | 40.0% |
| GTAAGAGACTACTTGTGTGA+AGG | - | chr3_3:82599587-82599606 | None:intergenic | 40.0% | |
| AGCTGATTAAGTTTGGCACA+AGG | + | chr3_3:82599609-82599628 | Msa0478130:three_prime_UTR | 40.0% | |
| TAGAGTGAAGAAATGGCGTC+AGG | + | chr3_3:82593808-82593827 | Msa0478130:exon | 45.0% | |
| TCACAGATGAAGATCGTCCA+TGG | + | chr3_3:82593841-82593860 | Msa0478130:CDS | 45.0% | |
| CAGGCAGTACTTTGTGCATA+TGG | + | chr3_3:82594157-82594176 | Msa0478130:intron | 45.0% | |
| CGTCGAAAATGAACACCTCT+TGG | - | chr3_3:82594727-82594746 | None:intergenic | 45.0% | |
| GCTTGTATTGTCACATGTGG+TGG | + | chr3_3:82594885-82594904 | Msa0478130:CDS | 45.0% | |
| ! | TTATGACAGTGTTGAGGCCA+GGG | - | chr3_3:82594917-82594936 | None:intergenic | 45.0% |
| TGGCCTCAACACTGTCATAA+GGG | + | chr3_3:82594917-82594936 | Msa0478130:CDS | 45.0% | |
| GTCAATGACATCCATAAGCG+TGG | + | chr3_3:82595484-82595503 | Msa0478130:CDS | 45.0% | |
| AATGACATCCATAAGCGTGG+AGG | + | chr3_3:82595487-82595506 | Msa0478130:CDS | 45.0% | |
| CAAGATAGTTGACAGCATCC+AGG | + | chr3_3:82595549-82595568 | Msa0478130:CDS | 45.0% | |
| TAGTTGACAGCATCCAGGAT+CGG | + | chr3_3:82595554-82595573 | Msa0478130:CDS | 45.0% | |
| AGGAGCTGCTGTGATTTATG+AGG | + | chr3_3:82595776-82595795 | Msa0478130:CDS | 45.0% | |
| AAAAAACAAGGGAAGGGTGG+GGG | - | chr3_3:82596283-82596302 | None:intergenic | 45.0% | |
| GAAAAAACAAGGGAAGGGTG+GGG | - | chr3_3:82596284-82596303 | None:intergenic | 45.0% | |
| AAATAAGAAAGAACCGGGGG+GGG | - | chr3_3:82596446-82596465 | None:intergenic | 45.0% | |
| GAAATAAGAAAGAACCGGGG+GGG | - | chr3_3:82596447-82596466 | None:intergenic | 45.0% | |
| GGAAATAAGAAAGAACCGGG+GGG | - | chr3_3:82596448-82596467 | None:intergenic | 45.0% | |
| CTATCATCGCTTGCACTGTT+TGG | - | chr3_3:82596469-82596488 | None:intergenic | 45.0% | |
| ACTACCTCAGTACCTCTGAT+AGG | + | chr3_3:82596988-82597007 | Msa0478130:intron | 45.0% | |
| !! | TTGACCTATCAGAGGTACTG+AGG | - | chr3_3:82596995-82597014 | None:intergenic | 45.0% |
| GGTCTGAAAGTAGCAATTGC+TGG | + | chr3_3:82597187-82597206 | Msa0478130:CDS | 45.0% | |
| TAGGTTATCGACAGGTCCTT+TGG | + | chr3_3:82597370-82597389 | Msa0478130:intron | 45.0% | |
| !!! | TGGTTTTGATACCGCAGTTG+AGG | + | chr3_3:82597390-82597409 | Msa0478130:CDS | 45.0% |
| ! | TTTTGATACCGCAGTTGAGG+AGG | + | chr3_3:82597393-82597412 | Msa0478130:CDS | 45.0% |
| ACGTTTGGATGGAGGAAGTA+GGG | - | chr3_3:82597568-82597587 | None:intergenic | 45.0% | |
| TACGTTTGGATGGAGGAAGT+AGG | - | chr3_3:82597569-82597588 | None:intergenic | 45.0% | |
| AGTCACCCTTCTACCTTGAA+GGG | + | chr3_3:82597730-82597749 | Msa0478130:CDS | 45.0% | |
| ATAGTTATAGCTGAGGGAGC+AGG | + | chr3_3:82597810-82597829 | Msa0478130:CDS | 45.0% | |
| !! | TGTTTCCAGAAGCATCCTTC+TGG | - | chr3_3:82597872-82597891 | None:intergenic | 45.0% |
| ! | CGGATCATGTAAGTTGGATC+TGG | - | chr3_3:82598610-82598629 | None:intergenic | 45.0% |
| ATTGCCCGGATCATGTAAGT+TGG | - | chr3_3:82598616-82598635 | None:intergenic | 45.0% | |
| ATGCATTGCTTGGAATTGCC+CGG | - | chr3_3:82598630-82598649 | None:intergenic | 45.0% | |
| ACACTGTCTGATGCATTGCT+TGG | - | chr3_3:82598640-82598659 | None:intergenic | 45.0% | |
| TTCACTGCTGGACTTGTGAA+TGG | + | chr3_3:82598718-82598737 | Msa0478130:CDS | 45.0% | |
| CATCTTCTCGGTGATTCTCT+GGG | - | chr3_3:82599090-82599109 | None:intergenic | 45.0% | |
| TCATCTTCTCGGTGATTCTC+TGG | - | chr3_3:82599091-82599110 | None:intergenic | 45.0% | |
| TGGGTTTCAAAAAGCTTGGC+TGG | - | chr3_3:82599166-82599185 | None:intergenic | 45.0% | |
| TCCCTGACTCAGTTGTTAGA+AGG | + | chr3_3:82599218-82599237 | Msa0478130:CDS | 45.0% | |
| CCCTTCTAACAACTGAGTCA+GGG | - | chr3_3:82599222-82599241 | None:intergenic | 45.0% | |
| CCCTGACTCAGTTGTTAGAA+GGG | + | chr3_3:82599219-82599238 | Msa0478130:CDS | 45.0% | |
| TCCCTTCTAACAACTGAGTC+AGG | - | chr3_3:82599223-82599242 | None:intergenic | 45.0% | |
| !! | TCCCACTCAGTTGATAGAAG+GGG | + | chr3_3:82599289-82599308 | Msa0478130:CDS | 45.0% |
| TCCCCTTCTATCAACTGAGT+GGG | - | chr3_3:82599293-82599312 | None:intergenic | 45.0% | |
| GTATGTAACCAGCATCGCCA+TGG | - | chr3_3:82593861-82593880 | None:intergenic | 50.0% | |
| ! | TGGCGATGCTGGTTACATAC+TGG | + | chr3_3:82593861-82593880 | Msa0478130:CDS | 50.0% |
| GGATGACACCGTTCCTCAAA+AGG | + | chr3_3:82594178-82594197 | Msa0478130:CDS | 50.0% | |
| GTTCACAAAGATGGCCCAAG+AGG | + | chr3_3:82594709-82594728 | Msa0478130:CDS | 50.0% | |
| ! | GGTGTTCATTTTCGACGTGC+AGG | + | chr3_3:82594730-82594749 | Msa0478130:CDS | 50.0% |
| ! | CTTATGACAGTGTTGAGGCC+AGG | - | chr3_3:82594918-82594937 | None:intergenic | 50.0% |
| CTGGCCTCAACACTGTCATA+AGG | + | chr3_3:82594916-82594935 | Msa0478130:CDS | 50.0% | |
| !! | TACGGTGTCGACAAAGTCCT+TGG | + | chr3_3:82594966-82594985 | Msa0478130:CDS | 50.0% |
| GTCCTTGGCATAGATGTGAG+TGG | + | chr3_3:82594981-82595000 | Msa0478130:intron | 50.0% | |
| AGCCACTCACATCTATGCCA+AGG | - | chr3_3:82594986-82595005 | None:intergenic | 50.0% | |
| TGCACAGTCTGATGTGTGCT+AGG | + | chr3_3:82595060-82595079 | Msa0478130:intron | 50.0% | |
| CAGTCTGATGTGTGCTAGGA+AGG | + | chr3_3:82595064-82595083 | Msa0478130:intron | 50.0% | |
| GCGTGCTCTTTGCACAAGTT+TGG | + | chr3_3:82595157-82595176 | Msa0478130:intron | 50.0% | |
| GAATCGTTCCTCCACGCTTA+TGG | - | chr3_3:82595498-82595517 | None:intergenic | 50.0% | |
| AAGCGTGGAGGAACGATTCT+TGG | + | chr3_3:82595499-82595518 | Msa0478130:CDS | 50.0% | |
| AGCGTGGAGGAACGATTCTT+GGG | + | chr3_3:82595500-82595519 | Msa0478130:CDS | 50.0% | |
| AGTTGACAGCATCCAGGATC+GGG | + | chr3_3:82595555-82595574 | Msa0478130:CDS | 50.0% | |
| CCTGATTAATTCCCCGATCC+TGG | - | chr3_3:82595570-82595589 | None:intergenic | 50.0% | |
| CCAGGATCGGGGAATTAATC+AGG | + | chr3_3:82595567-82595586 | Msa0478130:CDS | 50.0% | |
| AATAAGAAAGAACCGGGGGG+GGG | - | chr3_3:82596445-82596464 | None:intergenic | 50.0% | |
| ATACAGGAAGTTAGACGGCG+AGG | + | chr3_3:82597166-82597185 | Msa0478130:intron | 50.0% | |
| TCAAGGTAGAAGGGTGACTC+TGG | - | chr3_3:82597729-82597748 | None:intergenic | 50.0% | |
| GAGTCACCCTTCTACCTTGA+AGG | + | chr3_3:82597729-82597748 | Msa0478130:CDS | 50.0% | |
| ACCCTTCTACCTTGAAGGGA+AGG | + | chr3_3:82597734-82597753 | Msa0478130:CDS | 50.0% | |
| CCCTTCCCTTCAAGGTAGAA+GGG | - | chr3_3:82597738-82597757 | None:intergenic | 50.0% | |
| CCCTTCTACCTTGAAGGGAA+GGG | + | chr3_3:82597735-82597754 | Msa0478130:CDS | 50.0% | |
| ACCCTTCCCTTCAAGGTAGA+AGG | - | chr3_3:82597739-82597758 | None:intergenic | 50.0% | |
| TTCTACCTTGAAGGGAAGGG+TGG | + | chr3_3:82597738-82597757 | Msa0478130:CDS | 50.0% | |
| AAAGTCCACCCTTCCCTTCA+AGG | - | chr3_3:82597746-82597765 | None:intergenic | 50.0% | |
| CATGCAAGACATGGACCAGA+AGG | + | chr3_3:82597854-82597873 | Msa0478130:CDS | 50.0% | |
| ATGGACCAGAAGGATGCTTC+TGG | + | chr3_3:82597864-82597883 | Msa0478130:CDS | 50.0% | |
| GTGCATTGAGTGGTATGCAG+AGG | - | chr3_3:82598302-82598321 | None:intergenic | 50.0% | |
| CTTGCTCAGAGTGCAGTTCA+TGG | + | chr3_3:82598673-82598692 | Msa0478130:CDS | 50.0% | |
| GAGTGCAGTTCATGGTGCAA+TGG | + | chr3_3:82598681-82598700 | Msa0478130:CDS | 50.0% | |
| CAGTTCATGGTGCAATGGCT+GGG | + | chr3_3:82598686-82598705 | Msa0478130:CDS | 50.0% | |
| GGGTATACTGGATTCACTGC+TGG | + | chr3_3:82598706-82598725 | Msa0478130:CDS | 50.0% | |
| GAAGGGAGCAATTGCAATGG+TGG | + | chr3_3:82599236-82599255 | Msa0478130:CDS | 50.0% | |
| CAATTGCAATGGTGGCAGTG+AGG | + | chr3_3:82599244-82599263 | Msa0478130:CDS | 50.0% | |
| GTCCCCTTCTATCAACTGAG+TGG | - | chr3_3:82599294-82599313 | None:intergenic | 50.0% | |
| AAGATCGTCCATGGCGATGC+TGG | + | chr3_3:82593850-82593869 | Msa0478130:CDS | 55.0% | |
| GGAACGTAGTCGGAGAGATG+AGG | - | chr3_3:82593895-82593914 | None:intergenic | 55.0% | |
| ACGTGCAGGACCTCGACAAA+AGG | + | chr3_3:82594744-82594763 | Msa0478130:CDS | 55.0% | |
| ACGATTCTTGGGACATCCCG+AGG | + | chr3_3:82595511-82595530 | Msa0478130:CDS | 55.0% | |
| CGATTCTTGGGACATCCCGA+GGG | + | chr3_3:82595512-82595531 | Msa0478130:CDS | 55.0% | |
| GATTCTTGGGACATCCCGAG+GGG | + | chr3_3:82595513-82595532 | Msa0478130:CDS | 55.0% | |
| ATTCTTGGGACATCCCGAGG+GGG | + | chr3_3:82595514-82595533 | Msa0478130:CDS | 55.0% | |
| GTTGACAGCATCCAGGATCG+GGG | + | chr3_3:82595556-82595575 | Msa0478130:CDS | 55.0% | |
| ATAAGAAAGAACCGGGGGGG+GGG | - | chr3_3:82596444-82596463 | None:intergenic | 55.0% | |
| ACGTTGAGCCTCCTCAACTG+CGG | - | chr3_3:82597404-82597423 | None:intergenic | 55.0% | |
| GAGGAGCTCTCACCAACTAC+AGG | + | chr3_3:82598071-82598090 | Msa0478130:intron | 55.0% | |
| GCAGTTCATGGTGCAATGGC+TGG | + | chr3_3:82598685-82598704 | Msa0478130:CDS | 55.0% | |
| GGTGCAATGGCTGGGTATAC+TGG | + | chr3_3:82598694-82598713 | Msa0478130:CDS | 55.0% | |
| TGGCAGTGAGGATGCGAAGA+AGG | + | chr3_3:82599256-82599275 | Msa0478130:CDS | 55.0% | |
| TGCAACTGTCACTGTCAGCG+AGG | - | chr3_3:82599346-82599365 | None:intergenic | 55.0% | |
| ATCTGCCGACGTGTCTGGGT+GGG | - | chr3_3:82593617-82593636 | None:intergenic | 60.0% | |
| ACATGTGGTGGTCTCTGCCC+TGG | + | chr3_3:82594897-82594916 | Msa0478130:CDS | 60.0% | |
| TTCTTGGGACATCCCGAGGG+GGG | + | chr3_3:82595515-82595534 | Msa0478130:CDS | 60.0% | |
| TGCCAGTATCATGCCCCCCT+CGG | - | chr3_3:82595531-82595550 | None:intergenic | 60.0% | |
| GGAGGAGATGGAACACAGCG+AGG | + | chr3_3:82595756-82595775 | Msa0478130:CDS | 60.0% | |
| TAAGAAAGAACCGGGGGGGG+GGG | - | chr3_3:82596443-82596462 | None:intergenic | 60.0% | |
| GGGTCTGGACCGTTCGTGTG+TGG | - | chr3_3:82593597-82593616 | None:intergenic | 65.0% | |
| CCAGACCCACCCAGACACGT+CGG | + | chr3_3:82593609-82593628 | Msa0478130:five_prime_UTR | 65.0% | |
| GATCTGCCGACGTGTCTGGG+TGG | - | chr3_3:82593618-82593637 | None:intergenic | 65.0% | |
| GGCGATCTGCCGACGTGTCT+GGG | - | chr3_3:82593621-82593640 | None:intergenic | 65.0% | |
| ! | TCCCGAGGGGGGCATGATAC+TGG | + | chr3_3:82595526-82595545 | Msa0478130:CDS | 65.0% |
| GCCAGTATCATGCCCCCCTC+GGG | - | chr3_3:82595530-82595549 | None:intergenic | 65.0% | |
| AAGAAAGAACCGGGGGGGGG+GGG | - | chr3_3:82596442-82596461 | None:intergenic | 65.0% | |
| CCGACGTGTCTGGGTGGGTC+TGG | - | chr3_3:82593612-82593631 | None:intergenic | 70.0% | |
| CGGCGATCTGCCGACGTGTC+TGG | - | chr3_3:82593622-82593641 | None:intergenic | 70.0% | |
| AGAAAGAACCGGGGGGGGGG+GGG | - | chr3_3:82596441-82596460 | None:intergenic | 70.0% | |
| AAAGAACCGGGGGGGGGGGG+GGG | - | chr3_3:82596439-82596458 | None:intergenic | 75.0% | |
| GAAAGAACCGGGGGGGGGGG+GGG | - | chr3_3:82596440-82596459 | None:intergenic | 75.0% | |
| ! | AAGAACCGGGGGGGGGGGGG+GGG | - | chr3_3:82596438-82596457 | None:intergenic | 80.0% |
| ! | AGAACCGGGGGGGGGGGGGG+GGG | - | chr3_3:82596437-82596456 | None:intergenic | 85.0% |
| ! | GAACCGGGGGGGGGGGGGGG+GGG | - | chr3_3:82596436-82596455 | None:intergenic | 90.0% |
| ! | CTGCCCCCCCCCCCCCCCCC+CGG | + | chr3_3:82596430-82596449 | Msa0478130:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82593593 | 82599772 | 82593593 | ID=Msa0478130;Name=Msa0478130 |
| chr3_3 | mRNA | 82593593 | 82599772 | 82593593 | ID=Msa0478130-mRNA-1;Parent=Msa0478130;Name=Msa0478130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=227|1|1|1|1|1|13|396|519 |
| chr3_3 | exon | 82593593 | 82593924 | 82593593 | ID=Msa0478130-mRNA-1:exon:23075;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82594009 | 82594055 | 82594009 | ID=Msa0478130-mRNA-1:exon:23076;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82594160 | 82594199 | 82594160 | ID=Msa0478130-mRNA-1:exon:23077;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82594703 | 82594765 | 82594703 | ID=Msa0478130-mRNA-1:exon:23078;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82594858 | 82594995 | 82594858 | ID=Msa0478130-mRNA-1:exon:23079;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82595430 | 82595588 | 82595430 | ID=Msa0478130-mRNA-1:exon:23080;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82595744 | 82595797 | 82595744 | ID=Msa0478130-mRNA-1:exon:23081;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82597172 | 82597240 | 82597172 | ID=Msa0478130-mRNA-1:exon:23082;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82597373 | 82597502 | 82597373 | ID=Msa0478130-mRNA-1:exon:23083;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82597670 | 82597935 | 82597670 | ID=Msa0478130-mRNA-1:exon:23084;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82598469 | 82598517 | 82598469 | ID=Msa0478130-mRNA-1:exon:23085;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82598611 | 82598765 | 82598611 | ID=Msa0478130-mRNA-1:exon:23086;Parent=Msa0478130-mRNA-1 |
| chr3_3 | exon | 82599092 | 82599772 | 82599092 | ID=Msa0478130-mRNA-1:exon:23087;Parent=Msa0478130-mRNA-1 |
| chr3_3 | five_prime_UTR | 82593593 | 82593819 | 82593593 | ID=Msa0478130-mRNA-1:five_prime_utr;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82593820 | 82593924 | 82593820 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82594009 | 82594055 | 82594009 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82594160 | 82594199 | 82594160 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82594703 | 82594765 | 82594703 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82594858 | 82594995 | 82594858 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82595430 | 82595588 | 82595430 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82595744 | 82595797 | 82595744 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82597172 | 82597240 | 82597172 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82597373 | 82597502 | 82597373 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82597670 | 82597935 | 82597670 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82598469 | 82598517 | 82598469 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82598611 | 82598765 | 82598611 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | CDS | 82599092 | 82599376 | 82599092 | ID=Msa0478130-mRNA-1:cds;Parent=Msa0478130-mRNA-1 |
| chr3_3 | three_prime_UTR | 82599377 | 82599772 | 82599377 | ID=Msa0478130-mRNA-1:three_prime_utr;Parent=Msa0478130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
