Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478430 | XP_003603699.1 | 87.537 | 337 | 17 | 4 | 1 | 312 | 1 | 337 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478430 | sp|Q9LSL1|BH093_ARATH | 59.903 | 207 | 56 | 5 | 131 | 312 | 147 | 351 | 6.59e-64 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478430 | G7J450 | 87.537 | 337 | 17 | 4 | 1 | 312 | 1 | 337 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0478430 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006080 | Msa0478430 | 0.827528 | 1.488732e-54 | -8.615850e-47 |
| Msa0033220 | Msa0478430 | 0.838109 | 3.495859e-57 | -8.615850e-47 |
| Msa0037180 | Msa0478430 | 0.816602 | 5.081802e-52 | -8.615850e-47 |
| Msa0039750 | Msa0478430 | 0.817509 | 3.178889e-52 | -8.615850e-47 |
| Msa0040860 | Msa0478430 | -0.801902 | 7.230444e-49 | -8.615850e-47 |
| Msa0072440 | Msa0478430 | 0.801605 | 8.320696e-49 | -8.615850e-47 |
| Msa0075990 | Msa0478430 | -0.801237 | 9.899376e-49 | -8.615850e-47 |
| Msa0079880 | Msa0478430 | 0.847415 | 1.173026e-59 | -8.615850e-47 |
| Msa0080030 | Msa0478430 | 0.831331 | 1.773498e-55 | -8.615850e-47 |
| Msa0092220 | Msa0478430 | 0.813664 | 2.283001e-51 | -8.615850e-47 |
| Msa0098240 | Msa0478430 | 0.817368 | 3.418858e-52 | -8.615850e-47 |
| Msa0141410 | Msa0478430 | 0.810493 | 1.121634e-50 | -8.615850e-47 |
| Msa0165640 | Msa0478430 | 0.837359 | 5.445408e-57 | -8.615850e-47 |
| Msa0177320 | Msa0478430 | 0.816850 | 4.471837e-52 | -8.615850e-47 |
| Msa0197170 | Msa0478430 | 0.802850 | 4.612059e-49 | -8.615850e-47 |
| Msa0198990 | Msa0478430 | 0.821493 | 3.921079e-53 | -8.615850e-47 |
| Msa0216150 | Msa0478430 | -0.807761 | 4.316585e-50 | -8.615850e-47 |
| Msa0219280 | Msa0478430 | 0.857553 | 1.509101e-62 | -8.615850e-47 |
| Msa0234170 | Msa0478430 | 0.806347 | 8.598508e-50 | -8.615850e-47 |
| Msa0384590 | Msa0478430 | 0.908566 | 1.486593e-81 | -8.615850e-47 |
| Msa0386880 | Msa0478430 | 0.816255 | 6.076047e-52 | -8.615850e-47 |
| Msa0388210 | Msa0478430 | 0.842510 | 2.474043e-58 | -8.615850e-47 |
| Msa0403740 | Msa0478430 | -0.815939 | 7.148801e-52 | -8.615850e-47 |
| Msa0412580 | Msa0478430 | -0.804079 | 2.565872e-49 | -8.615850e-47 |
| Msa0412790 | Msa0478430 | 0.803417 | 3.520728e-49 | -8.615850e-47 |
| Msa0434660 | Msa0478430 | 0.894307 | 2.788828e-75 | -8.615850e-47 |
| Msa0437440 | Msa0478430 | -0.803609 | 3.212304e-49 | -8.615850e-47 |
| Msa0456450 | Msa0478430 | -0.813953 | 1.971199e-51 | -8.615850e-47 |
| Msa0457070 | Msa0478430 | -0.812683 | 3.747356e-51 | -8.615850e-47 |
| Msa0478430 | Msa0522540 | 0.908141 | 2.362549e-81 | -8.615850e-47 |
| Msa0478430 | Msa0523420 | -0.807984 | 3.869085e-50 | -8.615850e-47 |
| Msa0478430 | Msa0563440 | 0.819849 | 9.359074e-53 | -8.615850e-47 |
| Msa0478430 | Msa0567330 | 0.804084 | 2.560250e-49 | -8.615850e-47 |
| Msa0478430 | Msa0579080 | 0.818407 | 1.992556e-52 | -8.615850e-47 |
| Msa0478430 | Msa0579160 | 0.819696 | 1.014036e-52 | -8.615850e-47 |
| Msa0478430 | Msa0579220 | 0.825157 | 5.462171e-54 | -8.615850e-47 |
| Msa0478430 | Msa0581350 | 0.810956 | 8.904192e-51 | -8.615850e-47 |
| Msa0478430 | Msa0603310 | 0.802969 | 4.359446e-49 | -8.615850e-47 |
| Msa0478430 | Msa0604190 | 0.827200 | 1.783532e-54 | -8.615850e-47 |
| Msa0478430 | Msa0610690 | 0.821680 | 3.549888e-53 | -8.615850e-47 |
| Msa0478430 | Msa0610700 | -0.811017 | 8.638773e-51 | -8.615850e-47 |
| Msa0478430 | Msa0611640 | 0.804099 | 2.541629e-49 | -8.615850e-47 |
| Msa0478430 | Msa0615070 | 0.815007 | 1.152725e-51 | -8.615850e-47 |
| Msa0478430 | Msa0645390 | 0.835356 | 1.759735e-56 | -8.615850e-47 |
| Msa0478430 | Msa0701800 | -0.802788 | 4.750472e-49 | -8.615850e-47 |
| Msa0478430 | Msa0702800 | 0.803236 | 3.838836e-49 | -8.615850e-47 |
| Msa0478430 | Msa0707860 | -0.802551 | 5.317859e-49 | -8.615850e-47 |
| Msa0478430 | Msa0721930 | 0.836239 | 1.051326e-56 | -8.615850e-47 |
| Msa0478430 | Msa0726170 | -0.801553 | 8.527782e-49 | -8.615850e-47 |
| Msa0478430 | Msa0741040 | 0.812713 | 3.691671e-51 | -8.615850e-47 |
| Msa0478430 | Msa0742370 | -0.811467 | 6.901174e-51 | -8.615850e-47 |
| Msa0478430 | Msa0745140 | 0.807436 | 5.060631e-50 | -8.615850e-47 |
| Msa0478430 | Msa0761310 | 0.817420 | 3.328009e-52 | -8.615850e-47 |
| Msa0478430 | Msa0762930 | 0.837728 | 4.380868e-57 | -8.615850e-47 |
| Msa0478430 | Msa0776640 | 0.808753 | 2.653244e-50 | -8.615850e-47 |
| Msa0478430 | Msa0795750 | 0.801720 | 7.883380e-49 | -8.615850e-47 |
| Msa0478430 | Msa0805390 | 0.847929 | 8.469732e-60 | -8.615850e-47 |
| Msa0478430 | Msa0807870 | -0.800020 | 1.752767e-48 | -8.615850e-47 |
| Msa0478430 | Msa0825920 | 0.808047 | 3.751489e-50 | -8.615850e-47 |
| Msa0478430 | Msa0828960 | 0.801987 | 6.947739e-49 | -8.615850e-47 |
| Msa0478430 | Msa0831740 | 0.813675 | 2.270544e-51 | -8.615850e-47 |
| Msa0478430 | Msa0831800 | 0.830151 | 3.450415e-55 | -8.615850e-47 |
| Msa0478430 | Msa0842750 | 0.846553 | 2.020549e-59 | -8.615850e-47 |
| Msa0478430 | Msa0862480 | -0.804970 | 1.672689e-49 | -8.615850e-47 |
| Msa0478430 | Msa0865420 | 0.808821 | 2.565604e-50 | -8.615850e-47 |
| Msa0478430 | Msa0932140 | 0.800530 | 1.380203e-48 | -8.615850e-47 |
| Msa0478430 | Msa0958830 | 0.806744 | 7.089239e-50 | -8.615850e-47 |
| Msa0478430 | Msa0969380 | 0.812304 | 4.534591e-51 | -8.615850e-47 |
| Msa0478430 | Msa0969720 | 0.811885 | 5.595573e-51 | -8.615850e-47 |
| Msa0478430 | Msa1014550 | -0.816533 | 5.264704e-52 | -8.615850e-47 |
| Msa0478430 | Msa1039440 | -0.811588 | 6.494824e-51 | -8.615850e-47 |
| Msa0478430 | Msa1055520 | -0.804288 | 2.321692e-49 | -8.615850e-47 |
| Msa0478430 | Msa1078760 | -0.803656 | 3.140997e-49 | -8.615850e-47 |
| Msa0478430 | Msa1082410 | 0.813975 | 1.949661e-51 | -8.615850e-47 |
| Msa0478430 | Msa1088400 | -0.818067 | 2.377686e-52 | -8.615850e-47 |
| Msa0478430 | Msa1094810 | 0.822117 | 2.812061e-53 | -8.615850e-47 |
| Msa0478430 | Msa1115600 | 0.812102 | 5.019517e-51 | -8.615850e-47 |
| Msa0478430 | Msa1146980 | 0.802976 | 4.344188e-49 | -8.615850e-47 |
| Msa0478430 | Msa1165460 | 0.808985 | 2.366494e-50 | -8.615850e-47 |
| Msa0478430 | Msa1184680 | 0.837456 | 5.144300e-57 | -8.615850e-47 |
| Msa0478430 | Msa1191530 | -0.801267 | 9.761421e-49 | -8.615850e-47 |
| Msa0478430 | Msa1197720 | 0.855341 | 6.734018e-62 | -8.615850e-47 |
| Msa0478430 | Msa1203650 | 0.800071 | 1.711873e-48 | -8.615850e-47 |
| Msa0478430 | Msa1205270 | -0.819975 | 8.756608e-53 | -8.615850e-47 |
| Msa0478430 | Msa1212830 | 0.827180 | 1.804117e-54 | -8.615850e-47 |
| Msa0478430 | Msa1213040 | 0.814563 | 1.445633e-51 | -8.615850e-47 |
| Msa0478430 | Msa1251410 | 0.852920 | 3.363303e-61 | -8.615850e-47 |
| Msa0478430 | Msa1254910 | 0.822525 | 2.260887e-53 | -8.615850e-47 |
| Msa0478430 | Msa1260220 | 0.812832 | 3.476509e-51 | -8.615850e-47 |
| Msa0478430 | Msa1266120 | -0.805018 | 1.634768e-49 | -8.615850e-47 |
| Msa0478430 | Msa1284020 | 0.812319 | 4.500261e-51 | -8.615850e-47 |
| Msa0478430 | Msa1295210 | -0.804632 | 1.968147e-49 | -8.615850e-47 |
| Msa0478430 | Msa1295480 | -0.807539 | 4.810672e-50 | -8.615850e-47 |
| Msa0478430 | Msa1297220 | -0.807415 | 5.112238e-50 | -8.615850e-47 |
| Msa0478430 | Msa1322980 | 0.802609 | 5.173388e-49 | -8.615850e-47 |
| Msa0478430 | Msa1323070 | 0.818253 | 2.158145e-52 | -8.615850e-47 |
| Msa0478430 | Msa1323260 | -0.800423 | 1.451487e-48 | -8.615850e-47 |
| Msa0478430 | Msa1331570 | -0.819699 | 1.012682e-52 | -8.615850e-47 |
| Msa0478430 | Msa1342360 | -0.813855 | 2.071547e-51 | -8.615850e-47 |
| Msa0478430 | Msa1352600 | -0.811316 | 7.442817e-51 | -8.615850e-47 |
| Msa0478430 | Msa1357990 | 0.800033 | 1.742574e-48 | -8.615850e-47 |
| Msa0478430 | Msa1361980 | 0.824237 | 8.999678e-54 | -8.615850e-47 |
| Msa0478430 | Msa1363280 | -0.803945 | 2.735684e-49 | -8.615850e-47 |
| Msa0478430 | Msa1365820 | 0.820601 | 6.292495e-53 | -8.615850e-47 |
| Msa0478430 | Msa1366140 | -0.818009 | 2.451095e-52 | -8.615850e-47 |
| Msa0478430 | Msa1368390 | 0.821562 | 3.780185e-53 | -8.615850e-47 |
| Msa0478430 | Msa1372000 | 0.856273 | 3.597542e-62 | -8.615850e-47 |
| Msa0478430 | Msa1387450 | -0.811542 | 6.647261e-51 | -8.615850e-47 |
| Msa0478430 | Msa1396200 | -0.821422 | 4.073072e-53 | -8.615850e-47 |
| Msa0478430 | Msa1407840 | 0.808704 | 2.716777e-50 | -8.615850e-47 |
| Msa0478430 | Msa1422860 | 0.834057 | 3.735400e-56 | -8.615850e-47 |
| Msa0478430 | Msa1429810 | 0.824888 | 6.321744e-54 | -8.615850e-47 |
| Msa0478430 | Msa1433360 | 0.812592 | 3.922793e-51 | -8.615850e-47 |
| Msa0478430 | Msa1434300 | 0.810066 | 1.386761e-50 | -8.615850e-47 |
| Msa0478430 | Msa1437810 | 0.808557 | 2.921848e-50 | -8.615850e-47 |
| Msa0478430 | Msa1439250 | 0.808732 | 2.679645e-50 | -8.615850e-47 |
| Msa0478430 | Msa1453430 | 0.817797 | 2.736923e-52 | -8.615850e-47 |
| Msa0478430 | Msa1454500 | 0.822636 | 2.130429e-53 | -8.615850e-47 |
| Msa0478430 | Msa1457770 | 0.820721 | 5.905407e-53 | -8.615850e-47 |
| Msa0478430 | Msa1461770 | 0.801204 | 1.005293e-48 | -8.615850e-47 |
| Msa0241750 | Msa0478430 | 0.816497 | 5.363575e-52 | -8.615850e-47 |
| Msa0256540 | Msa0478430 | 0.820426 | 6.903633e-53 | -8.615850e-47 |
| Msa0258910 | Msa0478430 | 0.846453 | 2.151566e-59 | -8.615850e-47 |
| Msa0261480 | Msa0478430 | 0.801206 | 1.004280e-48 | -8.615850e-47 |
| Msa0267450 | Msa0478430 | -0.803247 | 3.819037e-49 | -8.615850e-47 |
| Msa0267510 | Msa0478430 | -0.806606 | 7.579554e-50 | -8.615850e-47 |
| Msa0269220 | Msa0478430 | -0.833358 | 5.585155e-56 | -8.615850e-47 |
| Msa0279810 | Msa0478430 | 0.800195 | 1.615443e-48 | -8.615850e-47 |
| Msa0298400 | Msa0478430 | 0.863695 | 2.072495e-64 | -8.615850e-47 |
| Msa0308750 | Msa0478430 | 0.807596 | 4.678130e-50 | -8.615850e-47 |
| Msa0316740 | Msa0478430 | 0.807865 | 4.101236e-50 | -8.615850e-47 |
| Msa0319220 | Msa0478430 | 0.801460 | 8.910657e-49 | -8.615850e-47 |
| Msa0334320 | Msa0478430 | 0.807960 | 3.916129e-50 | -8.615850e-47 |
| Msa0336120 | Msa0478430 | 0.843534 | 1.320667e-58 | -8.615850e-47 |
| Msa0364030 | Msa0478430 | -0.816644 | 4.973561e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478430 | MtrunA17_Chr3g0141091 | 87.537 | 337 | 17 | 4 | 1 | 312 | 1 | 337 | 0.0 | 563 |
| Msa0478430 | MtrunA17_Chr5g0411541 | 45.833 | 336 | 147 | 10 | 1 | 312 | 1 | 325 | 1.15e-74 | 232 |
| Msa0478430 | MtrunA17_Chr7g0252041 | 42.932 | 191 | 65 | 6 | 162 | 309 | 284 | 473 | 1.84e-34 | 130 |
| Msa0478430 | MtrunA17_Chr3g0131691 | 41.146 | 192 | 74 | 4 | 157 | 309 | 291 | 482 | 2.93e-33 | 127 |
| Msa0478430 | MtrunA17_Chr1g0211081 | 53.425 | 73 | 34 | 0 | 152 | 224 | 305 | 377 | 4.00e-18 | 84.7 |
| Msa0478430 | MtrunA17_Chr1g0185621 | 32.692 | 156 | 76 | 5 | 155 | 281 | 459 | 614 | 1.28e-14 | 74.3 |
| Msa0478430 | MtrunA17_Chr2g0298751 | 51.471 | 68 | 32 | 1 | 160 | 226 | 48 | 115 | 2.35e-13 | 68.6 |
| Msa0478430 | MtrunA17_Chr4g0049331 | 31.387 | 137 | 74 | 5 | 162 | 281 | 133 | 266 | 1.77e-12 | 67.0 |
| Msa0478430 | MtrunA17_Chr4g0028071 | 45.312 | 64 | 35 | 0 | 157 | 220 | 142 | 205 | 2.05e-12 | 67.0 |
| Msa0478430 | MtrunA17_Chr2g0320291 | 32.031 | 128 | 74 | 3 | 163 | 278 | 132 | 258 | 5.30e-12 | 65.5 |
| Msa0478430 | MtrunA17_Chr6g0468461 | 25.828 | 302 | 160 | 13 | 1 | 286 | 35 | 288 | 7.92e-12 | 65.1 |
| Msa0478430 | MtrunA17_Chr8g0366751 | 32.203 | 118 | 77 | 2 | 102 | 217 | 399 | 515 | 1.65e-11 | 65.1 |
| Msa0478430 | MtrunA17_Chr8g0365711 | 32.143 | 140 | 72 | 4 | 163 | 281 | 243 | 380 | 1.79e-11 | 64.3 |
| Msa0478430 | MtrunA17_Chr2g0280161 | 29.730 | 148 | 82 | 5 | 152 | 281 | 166 | 309 | 1.98e-11 | 63.9 |
| Msa0478430 | MtrunA17_Chr6g0468491 | 29.258 | 229 | 107 | 10 | 1 | 221 | 13 | 194 | 2.29e-11 | 63.5 |
| Msa0478430 | MtrunA17_Chr8g0346161 | 45.070 | 71 | 36 | 2 | 150 | 217 | 274 | 344 | 2.31e-11 | 64.3 |
| Msa0478430 | MtrunA17_Chr5g0400671 | 31.852 | 135 | 79 | 3 | 160 | 282 | 150 | 283 | 2.52e-11 | 63.5 |
| Msa0478430 | MtrunA17_Chr8g0346151 | 37.079 | 89 | 48 | 1 | 137 | 217 | 244 | 332 | 3.13e-11 | 63.9 |
| Msa0478430 | MtrunA17_Chr7g0275821 | 47.541 | 61 | 32 | 0 | 161 | 221 | 249 | 309 | 3.71e-11 | 63.5 |
| Msa0478430 | MtrunA17_Chr7g0260841 | 42.169 | 83 | 43 | 2 | 148 | 225 | 334 | 416 | 3.99e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478430 | AT5G65640.1 | 59.903 | 207 | 56 | 5 | 131 | 312 | 147 | 351 | 6.70e-65 | 208 |
| Msa0478430 | AT5G10570.1 | 57.692 | 182 | 53 | 4 | 151 | 312 | 138 | 315 | 3.01e-57 | 187 |
| Msa0478430 | AT1G12860.1 | 42.473 | 186 | 67 | 5 | 162 | 309 | 265 | 448 | 1.69e-33 | 128 |
| Msa0478430 | AT1G12860.2 | 48.951 | 143 | 53 | 3 | 162 | 284 | 265 | 407 | 2.82e-32 | 124 |
| Msa0478430 | AT5G65640.2 | 62.602 | 123 | 36 | 3 | 131 | 245 | 147 | 267 | 9.40e-32 | 120 |
| Msa0478430 | AT3G26744.1 | 40.838 | 191 | 67 | 6 | 162 | 309 | 305 | 492 | 1.46e-30 | 120 |
| Msa0478430 | AT3G26744.4 | 40.838 | 191 | 67 | 6 | 162 | 309 | 305 | 492 | 1.46e-30 | 120 |
| Msa0478430 | AT3G26744.2 | 40.838 | 191 | 67 | 6 | 162 | 309 | 305 | 492 | 1.46e-30 | 120 |
| Msa0478430 | AT3G26744.6 | 46.667 | 150 | 50 | 5 | 162 | 284 | 305 | 451 | 4.88e-29 | 116 |
| Msa0478430 | AT2G16910.1 | 35.625 | 160 | 57 | 4 | 163 | 281 | 313 | 467 | 3.34e-19 | 88.6 |
| Msa0478430 | AT4G29930.6 | 35.338 | 133 | 67 | 4 | 163 | 281 | 53 | 180 | 7.51e-15 | 73.2 |
| Msa0478430 | AT4G29930.2 | 34.127 | 126 | 75 | 4 | 163 | 281 | 53 | 177 | 9.62e-15 | 72.8 |
| Msa0478430 | AT4G29930.5 | 34.127 | 126 | 75 | 4 | 163 | 281 | 53 | 177 | 1.43e-14 | 72.4 |
| Msa0478430 | AT4G29930.4 | 50.000 | 66 | 32 | 1 | 163 | 227 | 53 | 118 | 2.66e-14 | 70.5 |
| Msa0478430 | AT4G29930.1 | 50.000 | 66 | 32 | 1 | 163 | 227 | 53 | 118 | 8.96e-14 | 70.5 |
| Msa0478430 | AT4G29930.3 | 50.000 | 66 | 32 | 1 | 163 | 227 | 53 | 118 | 1.17e-13 | 70.1 |
| Msa0478430 | AT4G29930.7 | 50.000 | 66 | 32 | 1 | 163 | 227 | 53 | 118 | 1.17e-13 | 70.1 |
| Msa0478430 | AT4G09820.1 | 32.824 | 131 | 76 | 2 | 153 | 280 | 352 | 473 | 1.14e-12 | 68.9 |
| Msa0478430 | AT2G46510.1 | 36.275 | 102 | 56 | 3 | 151 | 249 | 380 | 475 | 2.55e-12 | 67.8 |
| Msa0478430 | AT4G17880.1 | 33.117 | 154 | 83 | 6 | 151 | 286 | 401 | 552 | 9.24e-12 | 66.2 |
| Msa0478430 | AT4G00870.1 | 39.535 | 86 | 40 | 2 | 148 | 221 | 221 | 306 | 3.58e-11 | 63.9 |
| Msa0478430 | AT2G28160.1 | 40.909 | 66 | 39 | 0 | 155 | 220 | 122 | 187 | 4.40e-11 | 63.2 |
| Msa0478430 | AT2G28160.2 | 40.909 | 66 | 39 | 0 | 155 | 220 | 122 | 187 | 5.13e-11 | 63.2 |
| Msa0478430 | AT5G46760.1 | 42.466 | 73 | 40 | 1 | 151 | 221 | 400 | 472 | 8.67e-11 | 63.2 |
Find 77 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAAGATGAATATTATTTC+TGG | 0.172796 | 3_3:-83147800 | Msa0478430:three_prime_UTR |
| TGATGAAGAGCTTCAGAATT+TGG | 0.194817 | 3_3:-83149314 | Msa0478430:intron |
| TTGAAAACTACTGCCATTTC+AGG | 0.234710 | 3_3:+83149253 | None:intergenic |
| GTACCTACCTTGCTTATCTT+AGG | 0.245588 | 3_3:+83149100 | None:intergenic |
| ACAAAACCAATCAACATAAA+TGG | 0.254034 | 3_3:+83147947 | None:intergenic |
| GCAACAGGAATTGGAGAAAA+AGG | 0.270835 | 3_3:-83148197 | Msa0478430:intron |
| AGATTTCATTGAGGAATTAA+TGG | 0.282846 | 3_3:-83149668 | Msa0478430:CDS |
| TCTTCAACACCACAGATTCT+TGG | 0.321672 | 3_3:-83149427 | Msa0478430:CDS |
| AACACTTTCAATGAAATCTA+TGG | 0.323772 | 3_3:-83149466 | Msa0478430:CDS |
| ATACCCTGCACTTCTGAATA+AGG | 0.328974 | 3_3:+83148144 | None:intergenic |
| CATGATAAGAAAGTAAAGTT+AGG | 0.333376 | 3_3:-83147702 | Msa0478430:three_prime_UTR |
| TCTCTTTCGTCTTCTCCTTT+CGG | 0.335778 | 3_3:+83149159 | None:intergenic |
| CCTCCACATGCATACTCTTA+AGG | 0.336767 | 3_3:+83147744 | None:intergenic |
| GCCTAGTTGTTGCCATTGCC+AGG | 0.337642 | 3_3:-83147769 | Msa0478430:three_prime_UTR |
| CAAGAAGAGTTTGGAAGATA+TGG | 0.342140 | 3_3:+83149535 | None:intergenic |
| AAGTCTTCTTGAGAAATAAA+TGG | 0.343736 | 3_3:+83149376 | None:intergenic |
| GCTGCAAACAACATGTAAAA+TGG | 0.348415 | 3_3:-83149290 | Msa0478430:CDS |
| AATTGTGCCCAAGATTCATT+AGG | 0.385379 | 3_3:+83147858 | None:intergenic |
| GCCATTTCAGGTGATTGTAT+TGG | 0.396145 | 3_3:+83149265 | None:intergenic |
| TGTTGACTACAAGAAGAGTT+TGG | 0.397391 | 3_3:+83149526 | None:intergenic |
| CTCCACATGCATACTCTTAA+GGG | 0.401366 | 3_3:+83147745 | None:intergenic |
| AGATGTCCATTTATGTTGAT+TGG | 0.406000 | 3_3:-83147953 | Msa0478430:three_prime_UTR |
| GTCCTTGAAGTTTCTTCGAT+CGG | 0.408164 | 3_3:+83149203 | None:intergenic |
| TTGATCTTCTTCTCCCATCA+TGG | 0.410222 | 3_3:+83149345 | None:intergenic |
| TACCTACCTTGCTTATCTTA+GGG | 0.413903 | 3_3:+83149101 | None:intergenic |
| GCCAATACAATCACCTGAAA+TGG | 0.415763 | 3_3:-83149266 | Msa0478430:CDS |
| GGACTTGTCCTAATGAATCT+TGG | 0.424820 | 3_3:-83147866 | Msa0478430:three_prime_UTR |
| AGGGTTGAAATTTGTTGTGC+AGG | 0.424911 | 3_3:-83148704 | Msa0478430:CDS |
| ATTTGTTGTGCAGGGAAGCC+AGG | 0.426657 | 3_3:-83148695 | Msa0478430:CDS |
| CTTTGTAGTTTGAGGTAGAG+AGG | 0.429500 | 3_3:-83148739 | Msa0478430:intron |
| ATGATAAGAAAGTAAAGTTA+GGG | 0.436831 | 3_3:-83147701 | Msa0478430:three_prime_UTR |
| GACTTGTCCTAATGAATCTT+GGG | 0.440325 | 3_3:-83147865 | Msa0478430:three_prime_UTR |
| TCATTGTTGTTATAGCTTTG+AGG | 0.442557 | 3_3:+83149499 | None:intergenic |
| TTTCAACACTGGTAAGGGTA+TGG | 0.466525 | 3_3:-83149236 | Msa0478430:CDS |
| CAAGCCTTATTCAGAAGTGC+AGG | 0.468092 | 3_3:-83148148 | Msa0478430:CDS |
| AACCGATCGAAGAAACTTCA+AGG | 0.484937 | 3_3:-83149205 | Msa0478430:CDS |
| AATGACATGTCTATTATATG+AGG | 0.487600 | 3_3:-83148024 | Msa0478430:three_prime_UTR |
| TGTTGAAGATTCATCAAGTA+AGG | 0.499336 | 3_3:+83149441 | None:intergenic |
| ATGCATACTCTTAAGGGGCC+TGG | 0.513251 | 3_3:+83147751 | None:intergenic |
| ACTCTTAAGGGGCCTGGCAA+TGG | 0.522647 | 3_3:+83147757 | None:intergenic |
| GCCTGGCAATGGCAACAACT+AGG | 0.523493 | 3_3:+83147768 | None:intergenic |
| GACTTTCCACTGTCCATGAT+GGG | 0.524863 | 3_3:-83149358 | Msa0478430:CDS |
| GGGTTGAAATTTGTTGTGCA+GGG | 0.525508 | 3_3:-83148703 | Msa0478430:CDS |
| ATGTCTATTATATGAGGAAG+AGG | 0.530706 | 3_3:-83148018 | Msa0478430:three_prime_UTR |
| ACAGCCTTCGAAGAATCTAA+TGG | 0.532414 | 3_3:-83149182 | Msa0478430:CDS |
| ATATATAATATATATAATAG+AGG | 0.533089 | 3_3:-83148101 | Msa0478430:three_prime_UTR |
| ACATAGATGGAGTTCTATGA+TGG | 0.535755 | 3_3:-83149691 | None:intergenic |
| AGACTTTCCACTGTCCATGA+TGG | 0.536479 | 3_3:-83149359 | Msa0478430:CDS |
| CAATAGCCACAAGTGAACTT+AGG | 0.545285 | 3_3:-83148076 | Msa0478430:three_prime_UTR |
| ATGGACAGAACAGCTATACT+TGG | 0.546390 | 3_3:-83148991 | Msa0478430:CDS |
| AATATTATTTCTGGATGAGA+GGG | 0.549410 | 3_3:-83147791 | Msa0478430:three_prime_UTR |
| TTATTCAGAAGTGCAGGGTA+TGG | 0.549665 | 3_3:-83148142 | Msa0478430:CDS |
| TTTGAGGTAGAGAGGAGTGC+AGG | 0.549939 | 3_3:-83148731 | Msa0478430:CDS |
| TAGAGAGGAGTGCAGGCACA+AGG | 0.551771 | 3_3:-83148724 | Msa0478430:CDS |
| TAACACATTGTTGAATCTCA+AGG | 0.553569 | 3_3:+83148633 | None:intergenic |
| TTTGTTGTGCAGGGAAGCCA+GGG | 0.555249 | 3_3:-83148694 | Msa0478430:CDS |
| TTCAGAAGTGCAGGGTATGG+TGG | 0.556553 | 3_3:-83148139 | Msa0478430:CDS |
| AACTATCCTAAGTTCACTTG+TGG | 0.559070 | 3_3:+83148070 | None:intergenic |
| GAATATTATTTCTGGATGAG+AGG | 0.565307 | 3_3:-83147792 | Msa0478430:three_prime_UTR |
| GTAAACACATTGGAAGCATT+AGG | 0.566951 | 3_3:-83148656 | Msa0478430:CDS |
| TTTCTGATTAAGATTTCACT+TGG | 0.582741 | 3_3:+83148865 | None:intergenic |
| TCGGCCATTAGATTCTTCGA+AGG | 0.598463 | 3_3:+83149178 | None:intergenic |
| CGAAGAATCTAATGGCCGAA+AGG | 0.611328 | 3_3:-83149174 | Msa0478430:CDS |
| TGCTTCCAATGTGTTTACTG+TGG | 0.617642 | 3_3:+83148661 | None:intergenic |
| AGAGAGGAGTGCAGGCACAA+GGG | 0.627694 | 3_3:-83148723 | Msa0478430:CDS |
| CTTAATCAGAAATTCTCCAA+AGG | 0.629828 | 3_3:-83148854 | Msa0478430:intron |
| TCCACATGCATACTCTTAAG+GGG | 0.631244 | 3_3:+83147746 | None:intergenic |
| GCCCCTTAAGAGTATGCATG+TGG | 0.632747 | 3_3:-83147747 | Msa0478430:three_prime_UTR |
| TAGTATGAACCAAGAATCTG+TGG | 0.634286 | 3_3:+83149418 | None:intergenic |
| TCTTCTCCCATCATGGACAG+TGG | 0.637946 | 3_3:+83149352 | None:intergenic |
| CTATGATGGAGATTTCATTG+AGG | 0.638365 | 3_3:-83149677 | Msa0478430:CDS |
| CCTTAAGAGTATGCATGTGG+AGG | 0.642450 | 3_3:-83147744 | Msa0478430:three_prime_UTR |
| AATTGTCCCTAAGATAAGCA+AGG | 0.652852 | 3_3:-83149107 | Msa0478430:intron |
| AAGCCTTATTCAGAAGTGCA+GGG | 0.666202 | 3_3:-83148147 | Msa0478430:CDS |
| GCTATCCACAGTAAACACAT+TGG | 0.673367 | 3_3:-83148666 | Msa0478430:CDS |
| TTGCTCGTAGCATTGAAAGA+CGG | 0.697294 | 3_3:+83149128 | None:intergenic |
| ACTGTGGATAGCAACAACCC+TGG | 0.706149 | 3_3:+83148677 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATATATAAATTCATCAAA+AGG | - | chr3_3:83148866-83148885 | Msa0478430:CDS | 15.0% |
| !! | AGATATATAAATTCATCAAA+AGG | - | chr3_3:83148866-83148885 | Msa0478430:CDS | 15.0% |
| !! | AACACAGATTAATTTCAAAA+GGG | + | chr3_3:83148466-83148485 | None:intergenic | 20.0% |
| !! | CACACAGAAATAAAAATAAT+TGG | + | chr3_3:83148496-83148515 | None:intergenic | 20.0% |
| !! | AGTATCACTAACAAAATATT+AGG | + | chr3_3:83148820-83148839 | None:intergenic | 20.0% |
| !!! | GGAGTAATATTAGAATTTTT+TGG | - | chr3_3:83148960-83148979 | Msa0478430:CDS | 20.0% |
| !! | GAAAGACAATATATACTATT+AGG | + | chr3_3:83149024-83149043 | None:intergenic | 20.0% |
| !! | ATATATTGTCTTTCTTAGTT+AGG | - | chr3_3:83149030-83149049 | Msa0478430:intron | 20.0% |
| !!! | TAGCTATTTTTGATAGAAAT+TGG | + | chr3_3:83149383-83149402 | None:intergenic | 20.0% |
| !! | AATTTCTATCAAAAATAGCT+AGG | - | chr3_3:83149382-83149401 | Msa0478430:CDS | 20.0% |
| !! | ATTTCTATCAAAAATAGCTA+GGG | - | chr3_3:83149383-83149402 | Msa0478430:CDS | 20.0% |
| !!! | ATGAACGTTTTATATATGAT+TGG | + | chr3_3:83149447-83149466 | None:intergenic | 20.0% |
| !! | ATGATAAGAAAGTAAAGTTA+GGG | - | chr3_3:83149577-83149596 | Msa0478430:CDS | 20.0% |
| !! | AACACAGATTAATTTCAAAA+GGG | + | chr3_3:83148466-83148485 | None:intergenic | 20.0% |
| !! | CACACAGAAATAAAAATAAT+TGG | + | chr3_3:83148496-83148515 | None:intergenic | 20.0% |
| !! | AGTATCACTAACAAAATATT+AGG | + | chr3_3:83148820-83148839 | None:intergenic | 20.0% |
| !!! | GGAGTAATATTAGAATTTTT+TGG | - | chr3_3:83148960-83148979 | Msa0478430:CDS | 20.0% |
| !! | GAAAGACAATATATACTATT+AGG | + | chr3_3:83149024-83149043 | None:intergenic | 20.0% |
| !! | ATATATTGTCTTTCTTAGTT+AGG | - | chr3_3:83149030-83149049 | Msa0478430:intron | 20.0% |
| !!! | TAGCTATTTTTGATAGAAAT+TGG | + | chr3_3:83149383-83149402 | None:intergenic | 20.0% |
| !! | AATTTCTATCAAAAATAGCT+AGG | - | chr3_3:83149382-83149401 | Msa0478430:CDS | 20.0% |
| !! | ATTTCTATCAAAAATAGCTA+GGG | - | chr3_3:83149383-83149402 | Msa0478430:CDS | 20.0% |
| !!! | ATGAACGTTTTATATATGAT+TGG | + | chr3_3:83149447-83149466 | None:intergenic | 20.0% |
| !! | ATGATAAGAAAGTAAAGTTA+GGG | - | chr3_3:83149577-83149596 | Msa0478430:CDS | 20.0% |
| ! | AGATTTCATTGAGGAATTAA+TGG | - | chr3_3:83147610-83147629 | Msa0478430:three_prime_UTR | 25.0% |
| !!! | AATTGATTTTCTTCATGACA+TGG | + | chr3_3:83147668-83147687 | None:intergenic | 25.0% |
| ! | AACACTTTCAATGAAATCTA+TGG | - | chr3_3:83147812-83147831 | Msa0478430:three_prime_UTR | 25.0% |
| ! | AAGTCTTCTTGAGAAATAAA+TGG | + | chr3_3:83147905-83147924 | None:intergenic | 25.0% |
| ! | TATTGACCAACAAATTAGAT+CGG | + | chr3_3:83148253-83148272 | None:intergenic | 25.0% |
| ! | CAATAAATATTTGTGACAGA+TGG | - | chr3_3:83148268-83148287 | Msa0478430:intron | 25.0% |
| ! | TTTCTGATTAAGATTTCACT+TGG | + | chr3_3:83148416-83148435 | None:intergenic | 25.0% |
| ! | CAACACAGATTAATTTCAAA+AGG | + | chr3_3:83148467-83148486 | None:intergenic | 25.0% |
| ! | TTGAAATTAATCTGTGTTGA+AGG | - | chr3_3:83148468-83148487 | Msa0478430:intron | 25.0% |
| !!! | AATTGTTACTTTGTAGTTTG+AGG | - | chr3_3:83148531-83148550 | Msa0478430:intron | 25.0% |
| ! | TTAGTTACTTAATACTTCCT+CGG | - | chr3_3:83148717-83148736 | Msa0478430:CDS | 25.0% |
| ! | GAATTAAAGTCATTTACACA+TGG | + | chr3_3:83148919-83148938 | None:intergenic | 25.0% |
| ! | CTTTAATTCGACAGTTAAAA+AGG | - | chr3_3:83148930-83148949 | Msa0478430:CDS | 25.0% |
| ! | AAATTCTAATATTACTCCCT+CGG | + | chr3_3:83148958-83148977 | None:intergenic | 25.0% |
| !!! | AGGATAGTTTTTTCTTCATT+AGG | - | chr3_3:83149222-83149241 | Msa0478430:CDS | 25.0% |
| ! | AATGACATGTCTATTATATG+AGG | - | chr3_3:83149254-83149273 | Msa0478430:CDS | 25.0% |
| ! | ACAAAACCAATCAACATAAA+TGG | + | chr3_3:83149334-83149353 | None:intergenic | 25.0% |
| ! | GTGAAGATGAATATTATTTC+TGG | - | chr3_3:83149478-83149497 | Msa0478430:CDS | 25.0% |
| !!! | AATATTATTTCTGGATGAGA+GGG | - | chr3_3:83149487-83149506 | Msa0478430:CDS | 25.0% |
| ! | CATGATAAGAAAGTAAAGTT+AGG | - | chr3_3:83149576-83149595 | Msa0478430:CDS | 25.0% |
| ! | AGATTTCATTGAGGAATTAA+TGG | - | chr3_3:83147610-83147629 | Msa0478430:three_prime_UTR | 25.0% |
| !!! | AATTGATTTTCTTCATGACA+TGG | + | chr3_3:83147668-83147687 | None:intergenic | 25.0% |
| ! | AACACTTTCAATGAAATCTA+TGG | - | chr3_3:83147812-83147831 | Msa0478430:three_prime_UTR | 25.0% |
| ! | AAGTCTTCTTGAGAAATAAA+TGG | + | chr3_3:83147905-83147924 | None:intergenic | 25.0% |
| ! | TATTGACCAACAAATTAGAT+CGG | + | chr3_3:83148253-83148272 | None:intergenic | 25.0% |
| ! | CAATAAATATTTGTGACAGA+TGG | - | chr3_3:83148268-83148287 | Msa0478430:intron | 25.0% |
| ! | TTTCTGATTAAGATTTCACT+TGG | + | chr3_3:83148416-83148435 | None:intergenic | 25.0% |
| ! | CAACACAGATTAATTTCAAA+AGG | + | chr3_3:83148467-83148486 | None:intergenic | 25.0% |
| ! | TTGAAATTAATCTGTGTTGA+AGG | - | chr3_3:83148468-83148487 | Msa0478430:intron | 25.0% |
| !!! | AATTGTTACTTTGTAGTTTG+AGG | - | chr3_3:83148531-83148550 | Msa0478430:intron | 25.0% |
| ! | TTAGTTACTTAATACTTCCT+CGG | - | chr3_3:83148717-83148736 | Msa0478430:CDS | 25.0% |
| ! | GAATTAAAGTCATTTACACA+TGG | + | chr3_3:83148919-83148938 | None:intergenic | 25.0% |
| ! | CTTTAATTCGACAGTTAAAA+AGG | - | chr3_3:83148930-83148949 | Msa0478430:CDS | 25.0% |
| ! | AAATTCTAATATTACTCCCT+CGG | + | chr3_3:83148958-83148977 | None:intergenic | 25.0% |
| !!! | AGGATAGTTTTTTCTTCATT+AGG | - | chr3_3:83149222-83149241 | Msa0478430:CDS | 25.0% |
| ! | AATGACATGTCTATTATATG+AGG | - | chr3_3:83149254-83149273 | Msa0478430:CDS | 25.0% |
| ! | ACAAAACCAATCAACATAAA+TGG | + | chr3_3:83149334-83149353 | None:intergenic | 25.0% |
| ! | GTGAAGATGAATATTATTTC+TGG | - | chr3_3:83149478-83149497 | Msa0478430:CDS | 25.0% |
| !!! | AATATTATTTCTGGATGAGA+GGG | - | chr3_3:83149487-83149506 | Msa0478430:CDS | 25.0% |
| ! | CATGATAAGAAAGTAAAGTT+AGG | - | chr3_3:83149576-83149595 | Msa0478430:CDS | 25.0% |
| ! | ATTTTCTTCATGACATGGAT+TGG | + | chr3_3:83147663-83147682 | None:intergenic | 30.0% |
| ! | TCATTGTTGTTATAGCTTTG+AGG | + | chr3_3:83147782-83147801 | None:intergenic | 30.0% |
| TGTTGAAGATTCATCAAGTA+AGG | + | chr3_3:83147840-83147859 | None:intergenic | 30.0% | |
| ! | GTTATACCGATCTAATTTGT+TGG | - | chr3_3:83148244-83148263 | Msa0478430:intron | 30.0% |
| CTTAATCAGAAATTCTCCAA+AGG | - | chr3_3:83148424-83148443 | Msa0478430:intron | 30.0% | |
| ! | TCAGTGAAATTTTGTACCTT+TGG | + | chr3_3:83148443-83148462 | None:intergenic | 30.0% |
| TAACACATTGTTGAATCTCA+AGG | + | chr3_3:83148648-83148667 | None:intergenic | 30.0% | |
| TTTCAATGATTTCACAATGC+AGG | - | chr3_3:83148675-83148694 | Msa0478430:CDS | 30.0% | |
| !! | TTTCTTGTTTGTTATGCAAC+AGG | - | chr3_3:83149066-83149085 | Msa0478430:intron | 30.0% |
| ATGTCTATTATATGAGGAAG+AGG | - | chr3_3:83149260-83149279 | Msa0478430:CDS | 30.0% | |
| AGATGTCCATTTATGTTGAT+TGG | - | chr3_3:83149325-83149344 | Msa0478430:intron | 30.0% | |
| !! | GAATATTATTTCTGGATGAG+AGG | - | chr3_3:83149486-83149505 | Msa0478430:CDS | 30.0% |
| ! | ATTTTCTTCATGACATGGAT+TGG | + | chr3_3:83147663-83147682 | None:intergenic | 30.0% |
| ! | TCATTGTTGTTATAGCTTTG+AGG | + | chr3_3:83147782-83147801 | None:intergenic | 30.0% |
| TGTTGAAGATTCATCAAGTA+AGG | + | chr3_3:83147840-83147859 | None:intergenic | 30.0% | |
| ! | GTTATACCGATCTAATTTGT+TGG | - | chr3_3:83148244-83148263 | Msa0478430:intron | 30.0% |
| CTTAATCAGAAATTCTCCAA+AGG | - | chr3_3:83148424-83148443 | Msa0478430:intron | 30.0% | |
| ! | TCAGTGAAATTTTGTACCTT+TGG | + | chr3_3:83148443-83148462 | None:intergenic | 30.0% |
| TAACACATTGTTGAATCTCA+AGG | + | chr3_3:83148648-83148667 | None:intergenic | 30.0% | |
| TTTCAATGATTTCACAATGC+AGG | - | chr3_3:83148675-83148694 | Msa0478430:CDS | 30.0% | |
| !! | TTTCTTGTTTGTTATGCAAC+AGG | - | chr3_3:83149066-83149085 | Msa0478430:intron | 30.0% |
| ATGTCTATTATATGAGGAAG+AGG | - | chr3_3:83149260-83149279 | Msa0478430:CDS | 30.0% | |
| AGATGTCCATTTATGTTGAT+TGG | - | chr3_3:83149325-83149344 | Msa0478430:intron | 30.0% | |
| !! | GAATATTATTTCTGGATGAG+AGG | - | chr3_3:83149486-83149505 | Msa0478430:CDS | 30.0% |
| ! | CTATGATGGAGATTTCATTG+AGG | - | chr3_3:83147601-83147620 | Msa0478430:three_prime_UTR | 35.0% |
| CAAGAAGAGTTTGGAAGATA+TGG | + | chr3_3:83147746-83147765 | None:intergenic | 35.0% | |
| ! | TGTTGACTACAAGAAGAGTT+TGG | + | chr3_3:83147755-83147774 | None:intergenic | 35.0% |
| TAGTATGAACCAAGAATCTG+TGG | + | chr3_3:83147863-83147882 | None:intergenic | 35.0% | |
| TGATGAAGAGCTTCAGAATT+TGG | - | chr3_3:83147964-83147983 | Msa0478430:three_prime_UTR | 35.0% | |
| GCTGCAAACAACATGTAAAA+TGG | - | chr3_3:83147988-83148007 | Msa0478430:three_prime_UTR | 35.0% | |
| ! | TTGAAAACTACTGCCATTTC+AGG | + | chr3_3:83148028-83148047 | None:intergenic | 35.0% |
| ! | AGTAGTTTTCAACACTGGTA+AGG | - | chr3_3:83148036-83148055 | Msa0478430:three_prime_UTR | 35.0% |
| ! | GTAGTTTTCAACACTGGTAA+GGG | - | chr3_3:83148037-83148056 | Msa0478430:three_prime_UTR | 35.0% |
| AATTGTCCCTAAGATAAGCA+AGG | - | chr3_3:83148171-83148190 | Msa0478430:CDS | 35.0% | |
| TACCTACCTTGCTTATCTTA+GGG | + | chr3_3:83148180-83148199 | None:intergenic | 35.0% | |
| !! | GTAAACACATTGGAAGCATT+AGG | - | chr3_3:83148622-83148641 | Msa0478430:intron | 35.0% |
| CGACATTTAAAAAGTAACCG+AGG | + | chr3_3:83148737-83148756 | None:intergenic | 35.0% | |
| !! | GTTTGTTATGCAACAGGAAT+TGG | - | chr3_3:83149072-83149091 | Msa0478430:intron | 35.0% |
| AACTATCCTAAGTTCACTTG+TGG | + | chr3_3:83149211-83149230 | None:intergenic | 35.0% | |
| GACTTGTCCTAATGAATCTT+GGG | - | chr3_3:83149413-83149432 | Msa0478430:CDS | 35.0% | |
| AATTGTGCCCAAGATTCATT+AGG | + | chr3_3:83149423-83149442 | None:intergenic | 35.0% | |
| ! | CTATGATGGAGATTTCATTG+AGG | - | chr3_3:83147601-83147620 | Msa0478430:three_prime_UTR | 35.0% |
| CAAGAAGAGTTTGGAAGATA+TGG | + | chr3_3:83147746-83147765 | None:intergenic | 35.0% | |
| ! | TGTTGACTACAAGAAGAGTT+TGG | + | chr3_3:83147755-83147774 | None:intergenic | 35.0% |
| TAGTATGAACCAAGAATCTG+TGG | + | chr3_3:83147863-83147882 | None:intergenic | 35.0% | |
| TGATGAAGAGCTTCAGAATT+TGG | - | chr3_3:83147964-83147983 | Msa0478430:three_prime_UTR | 35.0% | |
| GCTGCAAACAACATGTAAAA+TGG | - | chr3_3:83147988-83148007 | Msa0478430:three_prime_UTR | 35.0% | |
| ! | TTGAAAACTACTGCCATTTC+AGG | + | chr3_3:83148028-83148047 | None:intergenic | 35.0% |
| ! | AGTAGTTTTCAACACTGGTA+AGG | - | chr3_3:83148036-83148055 | Msa0478430:three_prime_UTR | 35.0% |
| ! | GTAGTTTTCAACACTGGTAA+GGG | - | chr3_3:83148037-83148056 | Msa0478430:three_prime_UTR | 35.0% |
| AATTGTCCCTAAGATAAGCA+AGG | - | chr3_3:83148171-83148190 | Msa0478430:CDS | 35.0% | |
| TACCTACCTTGCTTATCTTA+GGG | + | chr3_3:83148180-83148199 | None:intergenic | 35.0% | |
| !! | GTAAACACATTGGAAGCATT+AGG | - | chr3_3:83148622-83148641 | Msa0478430:intron | 35.0% |
| CGACATTTAAAAAGTAACCG+AGG | + | chr3_3:83148737-83148756 | None:intergenic | 35.0% | |
| !! | GTTTGTTATGCAACAGGAAT+TGG | - | chr3_3:83149072-83149091 | Msa0478430:intron | 35.0% |
| AACTATCCTAAGTTCACTTG+TGG | + | chr3_3:83149211-83149230 | None:intergenic | 35.0% | |
| GACTTGTCCTAATGAATCTT+GGG | - | chr3_3:83149413-83149432 | Msa0478430:CDS | 35.0% | |
| AATTGTGCCCAAGATTCATT+AGG | + | chr3_3:83149423-83149442 | None:intergenic | 35.0% | |
| TCTTCAACACCACAGATTCT+TGG | - | chr3_3:83147851-83147870 | Msa0478430:three_prime_UTR | 40.0% | |
| TTGATCTTCTTCTCCCATCA+TGG | + | chr3_3:83147936-83147955 | None:intergenic | 40.0% | |
| GCCAATACAATCACCTGAAA+TGG | - | chr3_3:83148012-83148031 | Msa0478430:three_prime_UTR | 40.0% | |
| ! | GCCATTTCAGGTGATTGTAT+TGG | + | chr3_3:83148016-83148035 | None:intergenic | 40.0% |
| ! | ATGGCAGTAGTTTTCAACAC+TGG | - | chr3_3:83148031-83148050 | Msa0478430:three_prime_UTR | 40.0% |
| TTTCAACACTGGTAAGGGTA+TGG | - | chr3_3:83148042-83148061 | Msa0478430:three_prime_UTR | 40.0% | |
| AACCGATCGAAGAAACTTCA+AGG | - | chr3_3:83148073-83148092 | Msa0478430:three_prime_UTR | 40.0% | |
| GTCCTTGAAGTTTCTTCGAT+CGG | + | chr3_3:83148078-83148097 | None:intergenic | 40.0% | |
| ACAGCCTTCGAAGAATCTAA+TGG | - | chr3_3:83148096-83148115 | Msa0478430:three_prime_UTR | 40.0% | |
| TCTCTTTCGTCTTCTCCTTT+CGG | + | chr3_3:83148122-83148141 | None:intergenic | 40.0% | |
| ! | TTGCTCGTAGCATTGAAAGA+CGG | + | chr3_3:83148153-83148172 | None:intergenic | 40.0% |
| GTACCTACCTTGCTTATCTT+AGG | + | chr3_3:83148181-83148200 | None:intergenic | 40.0% | |
| ATGGACAGAACAGCTATACT+TGG | - | chr3_3:83148287-83148306 | Msa0478430:intron | 40.0% | |
| ! | CTTTGTAGTTTGAGGTAGAG+AGG | - | chr3_3:83148539-83148558 | Msa0478430:intron | 40.0% |
| !! | AGGGTTGAAATTTGTTGTGC+AGG | - | chr3_3:83148574-83148593 | Msa0478430:intron | 40.0% |
| !! | GGGTTGAAATTTGTTGTGCA+GGG | - | chr3_3:83148575-83148594 | Msa0478430:intron | 40.0% |
| GCTATCCACAGTAAACACAT+TGG | - | chr3_3:83148612-83148631 | Msa0478430:intron | 40.0% | |
| TGCTTCCAATGTGTTTACTG+TGG | + | chr3_3:83148620-83148639 | None:intergenic | 40.0% | |
| GCAACAGGAATTGGAGAAAA+AGG | - | chr3_3:83149081-83149100 | Msa0478430:intron | 40.0% | |
| !! | AAGCCTTATTCAGAAGTGCA+GGG | - | chr3_3:83149131-83149150 | Msa0478430:CDS | 40.0% |
| ATACCCTGCACTTCTGAATA+AGG | + | chr3_3:83149137-83149156 | None:intergenic | 40.0% | |
| ! | TTATTCAGAAGTGCAGGGTA+TGG | - | chr3_3:83149136-83149155 | Msa0478430:CDS | 40.0% |
| CAATAGCCACAAGTGAACTT+AGG | - | chr3_3:83149202-83149221 | Msa0478430:CDS | 40.0% | |
| CAAAAATAGCTAGGGTGTGA+TGG | - | chr3_3:83149391-83149410 | Msa0478430:CDS | 40.0% | |
| GGACTTGTCCTAATGAATCT+TGG | - | chr3_3:83149412-83149431 | Msa0478430:CDS | 40.0% | |
| TCCACATGCATACTCTTAAG+GGG | + | chr3_3:83149535-83149554 | None:intergenic | 40.0% | |
| CTCCACATGCATACTCTTAA+GGG | + | chr3_3:83149536-83149555 | None:intergenic | 40.0% | |
| TCTTCAACACCACAGATTCT+TGG | - | chr3_3:83147851-83147870 | Msa0478430:three_prime_UTR | 40.0% | |
| TTGATCTTCTTCTCCCATCA+TGG | + | chr3_3:83147936-83147955 | None:intergenic | 40.0% | |
| GCCAATACAATCACCTGAAA+TGG | - | chr3_3:83148012-83148031 | Msa0478430:three_prime_UTR | 40.0% | |
| ! | GCCATTTCAGGTGATTGTAT+TGG | + | chr3_3:83148016-83148035 | None:intergenic | 40.0% |
| ! | ATGGCAGTAGTTTTCAACAC+TGG | - | chr3_3:83148031-83148050 | Msa0478430:three_prime_UTR | 40.0% |
| TTTCAACACTGGTAAGGGTA+TGG | - | chr3_3:83148042-83148061 | Msa0478430:three_prime_UTR | 40.0% | |
| AACCGATCGAAGAAACTTCA+AGG | - | chr3_3:83148073-83148092 | Msa0478430:three_prime_UTR | 40.0% | |
| GTCCTTGAAGTTTCTTCGAT+CGG | + | chr3_3:83148078-83148097 | None:intergenic | 40.0% | |
| ACAGCCTTCGAAGAATCTAA+TGG | - | chr3_3:83148096-83148115 | Msa0478430:three_prime_UTR | 40.0% | |
| TCTCTTTCGTCTTCTCCTTT+CGG | + | chr3_3:83148122-83148141 | None:intergenic | 40.0% | |
| ! | TTGCTCGTAGCATTGAAAGA+CGG | + | chr3_3:83148153-83148172 | None:intergenic | 40.0% |
| GTACCTACCTTGCTTATCTT+AGG | + | chr3_3:83148181-83148200 | None:intergenic | 40.0% | |
| ATGGACAGAACAGCTATACT+TGG | - | chr3_3:83148287-83148306 | Msa0478430:intron | 40.0% | |
| ! | CTTTGTAGTTTGAGGTAGAG+AGG | - | chr3_3:83148539-83148558 | Msa0478430:intron | 40.0% |
| !! | AGGGTTGAAATTTGTTGTGC+AGG | - | chr3_3:83148574-83148593 | Msa0478430:intron | 40.0% |
| !! | GGGTTGAAATTTGTTGTGCA+GGG | - | chr3_3:83148575-83148594 | Msa0478430:intron | 40.0% |
| GCTATCCACAGTAAACACAT+TGG | - | chr3_3:83148612-83148631 | Msa0478430:intron | 40.0% | |
| TGCTTCCAATGTGTTTACTG+TGG | + | chr3_3:83148620-83148639 | None:intergenic | 40.0% | |
| GCAACAGGAATTGGAGAAAA+AGG | - | chr3_3:83149081-83149100 | Msa0478430:intron | 40.0% | |
| !! | AAGCCTTATTCAGAAGTGCA+GGG | - | chr3_3:83149131-83149150 | Msa0478430:CDS | 40.0% |
| ATACCCTGCACTTCTGAATA+AGG | + | chr3_3:83149137-83149156 | None:intergenic | 40.0% | |
| ! | TTATTCAGAAGTGCAGGGTA+TGG | - | chr3_3:83149136-83149155 | Msa0478430:CDS | 40.0% |
| CAATAGCCACAAGTGAACTT+AGG | - | chr3_3:83149202-83149221 | Msa0478430:CDS | 40.0% | |
| CAAAAATAGCTAGGGTGTGA+TGG | - | chr3_3:83149391-83149410 | Msa0478430:CDS | 40.0% | |
| GGACTTGTCCTAATGAATCT+TGG | - | chr3_3:83149412-83149431 | Msa0478430:CDS | 40.0% | |
| TCCACATGCATACTCTTAAG+GGG | + | chr3_3:83149535-83149554 | None:intergenic | 40.0% | |
| CTCCACATGCATACTCTTAA+GGG | + | chr3_3:83149536-83149555 | None:intergenic | 40.0% | |
| AGACTTTCCACTGTCCATGA+TGG | - | chr3_3:83147919-83147938 | Msa0478430:three_prime_UTR | 45.0% | |
| GACTTTCCACTGTCCATGAT+GGG | - | chr3_3:83147920-83147939 | Msa0478430:three_prime_UTR | 45.0% | |
| TCGGCCATTAGATTCTTCGA+AGG | + | chr3_3:83148103-83148122 | None:intergenic | 45.0% | |
| CGAAGAATCTAATGGCCGAA+AGG | - | chr3_3:83148104-83148123 | Msa0478430:three_prime_UTR | 45.0% | |
| GTCCCTAAGATAAGCAAGGT+AGG | - | chr3_3:83148175-83148194 | Msa0478430:CDS | 45.0% | |
| GACAGTTAAAAAGGAGCCGA+GGG | - | chr3_3:83148939-83148958 | Msa0478430:CDS | 45.0% | |
| !! | CAAGCCTTATTCAGAAGTGC+AGG | - | chr3_3:83149130-83149149 | Msa0478430:CDS | 45.0% |
| CCTCCACATGCATACTCTTA+AGG | + | chr3_3:83149537-83149556 | None:intergenic | 45.0% | |
| ! | CCTTAAGAGTATGCATGTGG+AGG | - | chr3_3:83149534-83149553 | Msa0478430:CDS | 45.0% |
| AGACTTTCCACTGTCCATGA+TGG | - | chr3_3:83147919-83147938 | Msa0478430:three_prime_UTR | 45.0% | |
| GACTTTCCACTGTCCATGAT+GGG | - | chr3_3:83147920-83147939 | Msa0478430:three_prime_UTR | 45.0% | |
| TCGGCCATTAGATTCTTCGA+AGG | + | chr3_3:83148103-83148122 | None:intergenic | 45.0% | |
| CGAAGAATCTAATGGCCGAA+AGG | - | chr3_3:83148104-83148123 | Msa0478430:three_prime_UTR | 45.0% | |
| GTCCCTAAGATAAGCAAGGT+AGG | - | chr3_3:83148175-83148194 | Msa0478430:CDS | 45.0% | |
| GACAGTTAAAAAGGAGCCGA+GGG | - | chr3_3:83148939-83148958 | Msa0478430:CDS | 45.0% | |
| !! | CAAGCCTTATTCAGAAGTGC+AGG | - | chr3_3:83149130-83149149 | Msa0478430:CDS | 45.0% |
| CCTCCACATGCATACTCTTA+AGG | + | chr3_3:83149537-83149556 | None:intergenic | 45.0% | |
| ! | CCTTAAGAGTATGCATGTGG+AGG | - | chr3_3:83149534-83149553 | Msa0478430:CDS | 45.0% |
| !! | ATATATAATATATATAATAG+AGG | - | chr3_3:83149177-83149196 | Msa0478430:CDS | 5.0% |
| !! | ATATATAATATATATAATAG+AGG | - | chr3_3:83149177-83149196 | Msa0478430:CDS | 5.0% |
| TCTTCTCCCATCATGGACAG+TGG | + | chr3_3:83147929-83147948 | None:intergenic | 50.0% | |
| ! | TTTGAGGTAGAGAGGAGTGC+AGG | - | chr3_3:83148547-83148566 | Msa0478430:intron | 50.0% |
| !! | ATTTGTTGTGCAGGGAAGCC+AGG | - | chr3_3:83148583-83148602 | Msa0478430:intron | 50.0% |
| ! | TTTGTTGTGCAGGGAAGCCA+GGG | - | chr3_3:83148584-83148603 | Msa0478430:intron | 50.0% |
| ACTGTGGATAGCAACAACCC+TGG | + | chr3_3:83148604-83148623 | None:intergenic | 50.0% | |
| CACAATGCAGGCTTCTTGCT+CGG | - | chr3_3:83148687-83148706 | Msa0478430:CDS | 50.0% | |
| CGACAGTTAAAAAGGAGCCG+AGG | - | chr3_3:83148938-83148957 | Msa0478430:CDS | 50.0% | |
| ! | TTCAGAAGTGCAGGGTATGG+TGG | - | chr3_3:83149139-83149158 | Msa0478430:CDS | 50.0% |
| ATGCATACTCTTAAGGGGCC+TGG | + | chr3_3:83149530-83149549 | None:intergenic | 50.0% | |
| ! | GCCCCTTAAGAGTATGCATG+TGG | - | chr3_3:83149531-83149550 | Msa0478430:intron | 50.0% |
| TCTTCTCCCATCATGGACAG+TGG | + | chr3_3:83147929-83147948 | None:intergenic | 50.0% | |
| ! | TTTGAGGTAGAGAGGAGTGC+AGG | - | chr3_3:83148547-83148566 | Msa0478430:intron | 50.0% |
| !! | ATTTGTTGTGCAGGGAAGCC+AGG | - | chr3_3:83148583-83148602 | Msa0478430:intron | 50.0% |
| ! | TTTGTTGTGCAGGGAAGCCA+GGG | - | chr3_3:83148584-83148603 | Msa0478430:intron | 50.0% |
| ACTGTGGATAGCAACAACCC+TGG | + | chr3_3:83148604-83148623 | None:intergenic | 50.0% | |
| CACAATGCAGGCTTCTTGCT+CGG | - | chr3_3:83148687-83148706 | Msa0478430:CDS | 50.0% | |
| CGACAGTTAAAAAGGAGCCG+AGG | - | chr3_3:83148938-83148957 | Msa0478430:CDS | 50.0% | |
| ! | TTCAGAAGTGCAGGGTATGG+TGG | - | chr3_3:83149139-83149158 | Msa0478430:CDS | 50.0% |
| ATGCATACTCTTAAGGGGCC+TGG | + | chr3_3:83149530-83149549 | None:intergenic | 50.0% | |
| ! | GCCCCTTAAGAGTATGCATG+TGG | - | chr3_3:83149531-83149550 | Msa0478430:intron | 50.0% |
| ! | TAGAGAGGAGTGCAGGCACA+AGG | - | chr3_3:83148554-83148573 | Msa0478430:intron | 55.0% |
| ! | AGAGAGGAGTGCAGGCACAA+GGG | - | chr3_3:83148555-83148574 | Msa0478430:intron | 55.0% |
| AATGCAGGCTTCTTGCTCGG+AGG | - | chr3_3:83148690-83148709 | Msa0478430:CDS | 55.0% | |
| GCCTAGTTGTTGCCATTGCC+AGG | - | chr3_3:83149509-83149528 | Msa0478430:intron | 55.0% | |
| GCCTGGCAATGGCAACAACT+AGG | + | chr3_3:83149513-83149532 | None:intergenic | 55.0% | |
| ACTCTTAAGGGGCCTGGCAA+TGG | + | chr3_3:83149524-83149543 | None:intergenic | 55.0% | |
| ! | TAGAGAGGAGTGCAGGCACA+AGG | - | chr3_3:83148554-83148573 | Msa0478430:intron | 55.0% |
| ! | AGAGAGGAGTGCAGGCACAA+GGG | - | chr3_3:83148555-83148574 | Msa0478430:intron | 55.0% |
| AATGCAGGCTTCTTGCTCGG+AGG | - | chr3_3:83148690-83148709 | Msa0478430:CDS | 55.0% | |
| GCCTAGTTGTTGCCATTGCC+AGG | - | chr3_3:83149509-83149528 | Msa0478430:intron | 55.0% | |
| GCCTGGCAATGGCAACAACT+AGG | + | chr3_3:83149513-83149532 | None:intergenic | 55.0% | |
| ACTCTTAAGGGGCCTGGCAA+TGG | + | chr3_3:83149524-83149543 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83147593 | 83149707 | 83147593 | ID=Msa0478430;Name=Msa0478430 |
| chr3_3 | mRNA | 83147593 | 83149707 | 83147593 | ID=Msa0478430-mRNA-1;Parent=Msa0478430;Name=Msa0478430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.4|0.33|1|0.4|0.33|6|533|312 |
| chr3_3 | exon | 83147593 | 83148212 | 83147593 | ID=Msa0478430-mRNA-1:exon:23281;Parent=Msa0478430-mRNA-1 |
| chr3_3 | exon | 83148637 | 83148753 | 83148637 | ID=Msa0478430-mRNA-1:exon:23280;Parent=Msa0478430-mRNA-1 |
| chr3_3 | exon | 83148855 | 83149013 | 83148855 | ID=Msa0478430-mRNA-1:exon:23279;Parent=Msa0478430-mRNA-1 |
| chr3_3 | exon | 83149108 | 83149328 | 83149108 | ID=Msa0478430-mRNA-1:exon:23278;Parent=Msa0478430-mRNA-1 |
| chr3_3 | exon | 83149344 | 83149523 | 83149344 | ID=Msa0478430-mRNA-1:exon:23277;Parent=Msa0478430-mRNA-1 |
| chr3_3 | exon | 83149533 | 83149707 | 83149533 | ID=Msa0478430-mRNA-1:exon:23276;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83149533 | 83149707 | 83149533 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83149344 | 83149523 | 83149344 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83149108 | 83149328 | 83149108 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83148855 | 83149013 | 83148855 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83148637 | 83148753 | 83148637 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | CDS | 83148126 | 83148212 | 83148126 | ID=Msa0478430-mRNA-1:cds;Parent=Msa0478430-mRNA-1 |
| chr3_3 | three_prime_UTR | 83147593 | 83148125 | 83147593 | ID=Msa0478430-mRNA-1:three_prime_utr;Parent=Msa0478430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
