AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0298400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298400 MtrunA17_Chr2g0321741 88.918 388 11 2 1 388 1 356 0.0 705
Msa0298400 MtrunA17_Chr3g0128111 51.705 176 78 5 14 184 36 209 8.59e-54 178
Msa0298400 MtrunA17_Chr5g0433781 51.829 164 77 2 13 174 1 164 1.32e-53 187
Msa0298400 MtrunA17_Chr3g0128151 52.326 172 78 4 1 168 4 175 1.58e-53 186
Msa0298400 MtrunA17_Chr5g0428991 54.777 157 68 3 10 163 16 172 2.61e-53 186
Msa0298400 MtrunA17_Chr2g0309891 52.532 158 72 2 13 167 1 158 4.31e-53 179
Msa0298400 MtrunA17_Chr3g0109821 50.279 179 76 5 13 179 1 178 9.57e-52 183
Msa0298400 MtrunA17_Chr6g0481091 47.674 172 83 3 13 182 1 167 1.50e-51 172
Msa0298400 MtrunA17_Chr5g0400461 46.032 189 80 4 13 181 1 187 2.76e-50 172
Msa0298400 MtrunA17_Chr4g0054791 43.961 207 97 6 13 208 1 199 8.18e-50 170
Msa0298400 MtrunA17_Chr3g0130101 49.324 148 73 2 18 163 7 154 1.50e-48 168
Msa0298400 MtrunA17_Chr2g0318081 43.407 182 99 3 3 182 1 180 7.91e-48 166
Msa0298400 MtrunA17_Chr1g0201021 53.595 153 60 3 11 162 13 155 1.01e-46 168
Msa0298400 MtrunA17_Chr4g0042561 49.057 159 75 2 12 165 3 160 1.88e-46 160
Msa0298400 MtrunA17_Chr4g0017921 48.780 164 79 3 11 171 1 162 2.28e-46 162
Msa0298400 MtrunA17_Chr8g0359921 47.170 159 79 3 13 167 9 166 9.72e-46 160
Msa0298400 MtrunA17_Chr4g0060931 42.051 195 98 4 20 201 19 211 1.88e-45 160
Msa0298400 MtrunA17_Chr8g0364791 46.405 153 80 2 13 163 1 153 2.19e-45 162
Msa0298400 MtrunA17_Chr2g0318101 46.875 160 70 4 20 165 17 175 2.47e-45 159
Msa0298400 MtrunA17_Chr7g0252971 40.580 207 101 7 11 200 1 202 2.54e-45 159
Msa0298400 MtrunA17_Chr3g0091921 44.444 180 86 3 20 186 18 196 3.72e-45 157
Msa0298400 MtrunA17_Chr5g0417791 44.134 179 93 4 20 192 5 182 1.33e-44 155
Msa0298400 MtrunA17_Chr4g0018391 48.630 146 72 2 20 163 9 153 5.33e-44 155
Msa0298400 MtrunA17_Chr3g0139331 42.222 180 96 4 17 190 10 187 6.23e-44 155
Msa0298400 MtrunA17_Chr1g0197361 47.945 146 74 2 20 163 10 155 1.23e-43 159
Msa0298400 MtrunA17_Chr8g0384721 37.903 248 139 8 14 248 3 248 1.57e-43 152
Msa0298400 MtrunA17_Chr8g0372121 38.889 198 102 6 13 201 1 188 2.20e-43 153
Msa0298400 MtrunA17_Chr3g0130731 52.027 148 65 5 20 163 9 154 3.64e-43 152
Msa0298400 MtrunA17_Chr8g0384201 44.444 153 83 2 13 163 1 153 4.01e-43 156
Msa0298400 MtrunA17_Chr6g0484441 47.917 144 73 2 20 163 7 148 4.10e-43 152
Msa0298400 MtrunA17_Chr2g0309331 50.327 153 70 4 20 167 12 163 5.76e-43 153
Msa0298400 MtrunA17_Chr4g0056541 47.945 146 73 2 20 163 9 153 7.02e-43 153
Msa0298400 MtrunA17_Chr5g0405211 40.513 195 95 5 11 186 1 193 7.75e-43 152
Msa0298400 MtrunA17_Chr7g0217711 50.000 134 66 1 21 154 22 154 8.05e-43 147
Msa0298400 MtrunA17_Chr3g0124761 47.973 148 71 3 20 163 9 154 1.06e-42 150
Msa0298400 MtrunA17_Chr1g0147421 46.784 171 80 6 4 165 7 175 1.24e-42 152
Msa0298400 MtrunA17_Chr7g0263931 46.405 153 74 3 20 165 13 164 2.03e-42 151
Msa0298400 MtrunA17_Chr8g0345671 37.770 278 143 10 21 285 14 274 3.12e-42 152
Msa0298400 MtrunA17_Chr2g0316971 49.032 155 71 4 20 167 25 178 3.71e-42 152
Msa0298400 MtrunA17_Chr3g0092671 47.260 146 75 2 20 163 7 152 4.17e-42 154
Msa0298400 MtrunA17_Chr2g0326361 45.399 163 80 4 20 175 16 176 2.11e-41 148
Msa0298400 MtrunA17_Chr1g0200561 47.586 145 73 2 20 162 21 164 3.30e-41 148
Msa0298400 MtrunA17_Chr8g0346001 44.048 168 79 3 11 163 5 172 3.89e-41 150
Msa0298400 MtrunA17_Chr1g0197351 54.688 128 57 1 16 142 40 167 5.86e-41 150
Msa0298400 MtrunA17_Chr4g0047841 41.860 172 73 4 20 165 17 187 6.10e-41 147
Msa0298400 MtrunA17_Chr7g0217721 49.254 134 67 1 21 154 22 154 1.15e-40 147
Msa0298400 MtrunA17_Chr7g0253011 43.094 181 91 5 3 175 5 181 4.63e-40 146
Msa0298400 MtrunA17_Chr6g0453451 50.376 133 65 1 20 152 22 153 9.95e-40 144
Msa0298400 MtrunA17_Chr7g0214071 47.260 146 70 3 20 163 17 157 1.10e-39 142
Msa0298400 MtrunA17_Chr4g0076731 50.794 126 60 2 18 142 54 178 1.71e-39 145
Msa0298400 MtrunA17_Chr5g0398971 45.578 147 77 2 20 163 9 155 2.72e-39 143
Msa0298400 MtrunA17_Chr8g0345691 45.625 160 70 6 16 163 2 156 2.75e-39 145
Msa0298400 MtrunA17_Chr6g0453131 42.236 161 81 4 18 167 15 174 6.11e-39 143
Msa0298400 MtrunA17_Chr8g0345711 51.471 136 61 4 11 142 5 139 1.10e-38 136
Msa0298400 MtrunA17_Chr6g0461661 46.853 143 67 4 3 142 7 143 1.49e-38 142
Msa0298400 MtrunA17_Chr8g0361731 43.210 162 79 5 18 167 14 174 1.90e-38 142
Msa0298400 MtrunA17_Chr5g0417001 40.805 174 87 5 18 180 14 182 1.42e-37 139
Msa0298400 MtrunA17_Chr2g0311661 37.433 187 100 4 19 188 22 208 1.89e-37 137
Msa0298400 MtrunA17_Chr2g0311651 45.312 128 66 1 19 142 23 150 5.43e-37 136
Msa0298400 MtrunA17_Chr2g0312321 42.675 157 85 4 9 163 2 155 6.61e-37 135
Msa0298400 MtrunA17_Chr3g0144271 52.381 126 56 3 20 142 25 149 4.48e-36 136
Msa0298400 MtrunA17_Chr4g0038751 40.667 150 81 3 19 165 16 160 9.02e-35 130
Msa0298400 MtrunA17_Chr7g0261411 48.462 130 64 2 15 142 7 135 2.14e-34 129
Msa0298400 MtrunA17_Chr2g0321631 43.506 154 77 5 20 163 6 159 2.89e-34 127
Msa0298400 MtrunA17_Chr8g0385991 40.506 158 83 3 14 163 10 164 4.97e-34 126
Msa0298400 MtrunA17_Chr5g0442771 42.446 139 76 2 18 153 18 155 6.04e-34 128
Msa0298400 MtrunA17_Chr1g0183741 46.565 131 67 2 14 142 6 135 7.83e-34 127
Msa0298400 MtrunA17_Chr7g0266701 34.241 257 135 10 17 248 3 250 1.00e-33 126
Msa0298400 MtrunA17_Chr8g0345741 51.695 118 52 5 29 142 2 118 1.92e-33 122
Msa0298400 MtrunA17_Chr8g0345731 47.656 128 61 4 21 142 27 154 7.95e-33 121
Msa0298400 MtrunA17_Chr4g0026141 44.444 153 76 6 20 163 7 159 3.31e-32 122
Msa0298400 MtrunA17_Chr8g0345721 41.176 170 66 6 6 142 23 191 3.35e-32 120
Msa0298400 MtrunA17_Chr3g0131911 37.267 161 87 4 14 163 10 167 4.80e-30 115
Msa0298400 MtrunA17_Chr8g0345701 43.537 147 62 6 14 142 3 146 1.27e-28 110
Msa0298400 MtrunA17_Chr3g0113001 40.945 127 68 2 72 191 18 144 9.18e-27 108
Msa0298400 MtrunA17_Chr4g0050701 37.600 125 67 3 20 142 13 128 9.76e-23 94.7
Msa0298400 MtrunA17_Chr3g0113031 51.389 72 35 0 83 154 4 75 5.00e-21 91.7
Msa0298400 MtrunA17_Chr7g0243371 47.945 73 36 1 72 142 17 89 9.96e-18 78.6
Msa0298400 MtrunA17_Chr8g0384351 35.616 146 70 8 20 163 12 135 1.51e-16 77.4
Msa0298400 MtrunA17_Chr7g0251661 33.333 126 79 5 21 144 13 135 2.38e-14 70.1
Msa0298400 MtrunA17_Chr3g0130321 31.496 127 78 3 20 144 9 128 2.69e-14 71.2
Msa0298400 MtrunA17_Chr7g0251651 32.540 126 80 5 21 144 21 143 2.42e-13 68.2
Msa0298400 MtrunA17_Chr7g0274971 26.368 201 125 8 24 210 11 202 1.04e-11 63.9
Msa0298400 MtrunA17_Chr3g0113011 57.143 49 20 1 19 66 19 67 4.32e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0298400 AT2G27300.1 47.525 303 106 6 5 307 1 250 3.48e-89 273
Msa0298400 AT5G22290.1 44.720 322 117 8 5 321 8 273 3.37e-83 258
Msa0298400 AT3G44290.1 49.645 282 99 8 14 295 10 248 3.39e-82 255
Msa0298400 AT3G44290.2 68.153 157 44 2 14 170 10 160 2.74e-77 238
Msa0298400 AT4G35580.1 55.758 165 71 2 12 174 3 167 2.55e-57 195
Msa0298400 AT4G35580.3 55.758 165 71 2 12 174 3 167 2.97e-57 196
Msa0298400 AT4G35580.2 55.758 165 71 2 12 174 3 167 3.19e-57 196
Msa0298400 AT1G65910.1 43.096 239 122 4 13 249 1 227 2.69e-56 195
Msa0298400 AT3G49530.2 53.750 160 71 3 13 169 8 167 6.13e-56 189
Msa0298400 AT1G33060.1 54.938 162 69 3 4 163 12 171 1.91e-55 193
Msa0298400 AT3G49530.1 53.750 160 71 3 13 169 8 167 2.01e-55 189
Msa0298400 AT1G33060.2 54.938 162 69 3 4 163 12 171 2.14e-55 193
Msa0298400 AT5G24590.2 50.838 179 80 4 7 182 2 175 3.73e-55 188
Msa0298400 AT5G17260.1 57.143 154 63 2 13 163 1 154 7.87e-55 188
Msa0298400 AT3G03200.1 55.844 154 65 2 13 163 1 154 8.92e-54 185
Msa0298400 AT3G17730.1 54.140 157 69 3 13 166 1 157 1.74e-53 178
Msa0298400 AT5G46590.1 47.701 174 87 3 13 182 1 174 6.46e-52 175
Msa0298400 AT4G17980.1 50.000 162 75 4 13 168 1 162 1.25e-49 168
Msa0298400 AT4G17980.2 50.000 162 75 4 13 168 1 162 2.66e-49 168
Msa0298400 AT1G54330.1 51.572 159 73 4 13 169 1 157 7.42e-49 167
Msa0298400 AT4G10350.1 47.778 180 84 4 20 194 11 185 3.97e-48 167
Msa0298400 AT4G27410.2 48.077 156 79 2 13 167 9 163 7.78e-48 165
Msa0298400 AT5G46590.2 49.383 162 73 4 13 170 1 157 9.38e-48 164
Msa0298400 AT3G10480.2 49.351 154 76 2 12 163 21 174 3.48e-47 167
Msa0298400 AT3G10490.1 49.020 153 75 2 14 163 23 175 4.06e-47 161
Msa0298400 AT3G10480.1 49.032 155 76 2 12 163 21 175 5.72e-47 166
Msa0298400 AT1G33280.1 46.893 177 88 4 11 183 1 175 6.30e-47 162
Msa0298400 AT5G09330.5 50.327 153 74 2 13 163 1 153 9.45e-47 167
Msa0298400 AT5G09330.2 50.327 153 74 2 13 163 1 153 9.45e-47 167
Msa0298400 AT5G09330.4 50.327 153 74 2 13 163 1 153 9.45e-47 167
Msa0298400 AT5G09330.3 50.327 153 74 2 13 163 1 153 9.45e-47 167
Msa0298400 AT5G09330.1 50.327 153 74 2 13 163 1 153 9.45e-47 167
Msa0298400 AT3G10500.1 50.658 152 73 2 14 163 5 156 1.50e-46 167
Msa0298400 AT3G15500.1 48.052 154 78 2 13 165 9 161 1.51e-46 162
Msa0298400 AT1G69490.1 48.408 157 75 2 14 165 5 160 1.51e-46 160
Msa0298400 AT5G04410.1 50.658 152 73 2 14 163 5 156 8.93e-46 166
Msa0298400 AT2G24430.2 48.701 154 76 2 17 168 15 167 1.68e-45 159
Msa0298400 AT2G24430.1 48.701 154 76 2 17 168 15 167 1.68e-45 159
Msa0298400 AT1G71930.2 42.051 195 91 4 12 187 3 194 1.73e-45 159
Msa0298400 AT1G71930.1 42.051 195 91 4 12 187 3 194 1.73e-45 159
Msa0298400 AT5G64060.1 42.286 175 94 3 13 185 1 170 2.11e-45 160
Msa0298400 AT3G10490.2 49.020 153 75 2 14 163 23 175 2.12e-45 162
Msa0298400 AT1G32510.1 44.974 189 87 5 13 184 1 189 5.46e-45 157
Msa0298400 AT4G27410.3 44.767 172 78 3 13 167 9 180 6.35e-45 157
Msa0298400 AT3G18400.1 48.611 144 73 1 20 163 7 149 6.63e-45 157
Msa0298400 AT1G52890.1 48.000 150 76 2 17 165 13 161 1.04e-44 157
Msa0298400 AT5G07680.2 49.007 151 73 2 20 167 5 154 7.01e-44 155
Msa0298400 AT5G07680.1 49.007 151 73 2 20 167 19 168 7.73e-44 155
Msa0298400 AT3G15170.1 49.673 153 71 3 16 163 18 169 1.06e-43 154
Msa0298400 AT5G39610.1 41.579 190 101 4 20 206 22 204 1.53e-43 153
Msa0298400 AT5G61430.1 46.250 160 77 3 7 163 10 163 2.09e-43 154
Msa0298400 AT3G29035.1 52.632 133 62 1 20 152 26 157 2.89e-43 153
Msa0298400 AT3G04070.2 47.273 165 73 5 16 167 8 171 8.90e-43 152
Msa0298400 AT5G08790.1 40.686 204 109 6 21 216 10 209 1.63e-42 150
Msa0298400 AT1G34190.1 52.344 128 60 1 20 146 18 145 2.30e-42 156
Msa0298400 AT1G61110.1 51.562 128 60 2 20 146 18 144 4.25e-42 150
Msa0298400 AT1G79580.3 46.369 179 79 7 1 170 1 171 4.46e-42 151
Msa0298400 AT1G79580.5 46.369 179 79 7 1 170 1 171 4.46e-42 151
Msa0298400 AT1G79580.4 46.369 179 79 7 1 170 1 171 4.46e-42 151
Msa0298400 AT1G79580.2 46.369 179 79 7 1 170 1 171 4.46e-42 151
Msa0298400 AT1G79580.1 46.369 179 79 7 1 170 1 171 4.46e-42 151
Msa0298400 AT3G04070.1 52.206 136 59 3 16 146 8 142 5.05e-42 151
Msa0298400 AT1G01720.1 46.980 149 72 3 20 163 9 155 6.30e-42 149
Msa0298400 AT1G34180.3 52.344 128 60 1 20 146 18 145 7.88e-42 152
Msa0298400 AT2G02450.1 53.175 126 57 2 18 142 51 175 8.42e-42 151
Msa0298400 AT5G66300.1 46.452 155 79 2 17 167 11 165 8.56e-42 149
Msa0298400 AT2G02450.2 53.175 126 57 2 18 142 51 175 1.18e-41 151
Msa0298400 AT4G36160.2 48.322 149 72 3 17 162 13 159 1.62e-41 150
Msa0298400 AT4G36160.1 48.322 149 72 3 17 162 9 155 1.74e-41 150
Msa0298400 AT4G36160.3 48.322 149 72 3 17 162 9 155 1.74e-41 150
Msa0298400 AT2G18060.3 45.752 153 78 3 13 162 4 154 2.39e-41 149
Msa0298400 AT2G18060.1 45.752 153 78 3 13 162 4 154 2.39e-41 149
Msa0298400 AT1G34180.1 52.344 128 60 1 20 146 18 145 2.64e-41 153
Msa0298400 AT1G32770.1 40.722 194 98 5 4 181 1 193 3.72e-41 149
Msa0298400 AT3G10480.3 40.957 188 75 3 12 163 21 208 4.66e-41 152
Msa0298400 AT3G15510.1 45.122 164 74 5 22 170 21 183 6.76e-41 148
Msa0298400 AT2G46770.1 41.117 197 97 5 4 181 1 197 9.23e-41 148
Msa0298400 AT1G12260.2 44.521 146 78 2 20 163 9 153 4.87e-40 145
Msa0298400 AT5G53950.1 57.143 126 49 4 20 142 19 142 5.91e-40 146
Msa0298400 AT1G76420.1 44.253 174 94 2 1 172 5 177 6.58e-40 145
Msa0298400 AT1G26870.1 43.293 164 76 4 18 167 16 176 8.51e-40 146
Msa0298400 AT1G77450.1 46.622 148 73 3 20 163 12 157 9.11e-40 142
Msa0298400 AT5G18270.2 42.941 170 89 4 1 163 1 169 9.20e-40 144
Msa0298400 AT2G33480.1 47.619 147 68 3 20 163 17 157 1.03e-39 142
Msa0298400 AT1G12260.1 44.521 146 78 2 20 163 9 153 1.26e-39 145
Msa0298400 AT1G62700.1 45.333 150 79 2 16 163 5 153 1.41e-39 145
Msa0298400 AT1G62700.2 45.333 150 79 2 16 163 5 153 1.41e-39 145
Msa0298400 AT5G63790.1 44.444 162 77 5 8 163 45 199 1.98e-39 143
Msa0298400 AT3G61910.1 35.749 207 110 4 1 191 1 200 2.13e-39 143
Msa0298400 AT5G63790.2 44.444 162 77 5 8 163 55 209 2.22e-39 143
Msa0298400 AT2G17040.1 46.000 150 73 3 19 165 7 151 3.61e-39 141
Msa0298400 AT5G18270.1 42.353 170 90 4 1 163 1 169 4.90e-39 142
Msa0298400 AT3G04060.1 43.636 165 86 4 3 163 7 168 6.72e-39 142
Msa0298400 AT2G33480.2 47.222 144 71 2 20 163 17 155 6.76e-39 140
Msa0298400 AT1G52880.1 47.134 157 69 4 22 165 21 176 8.22e-39 141
Msa0298400 AT1G34180.4 47.857 140 60 2 20 146 18 157 1.21e-38 144
Msa0298400 AT1G34180.2 47.857 140 60 2 20 146 18 157 3.11e-38 145
Msa0298400 AT5G62380.2 44.138 145 78 2 20 162 9 152 7.88e-38 139
Msa0298400 AT5G62380.1 44.138 145 78 2 20 162 9 152 7.88e-38 139
Msa0298400 AT5G04395.1 44.966 149 67 2 12 145 22 170 9.94e-38 135
Msa0298400 AT1G32870.3 48.630 146 69 3 3 144 28 171 1.05e-37 143
Msa0298400 AT5G13180.1 45.890 146 73 2 20 163 16 157 1.14e-37 137
Msa0298400 AT1G32870.2 51.111 135 63 2 11 144 3 135 1.35e-37 142
Msa0298400 AT1G32870.1 51.111 135 63 2 11 144 3 135 1.37e-37 142
Msa0298400 AT2G43000.1 47.581 124 64 1 19 142 19 141 1.53e-37 137
Msa0298400 AT3G12977.1 36.364 187 110 4 1 181 1 184 1.69e-37 137
Msa0298400 AT1G56010.2 39.881 168 94 5 7 168 8 174 4.54e-37 137
Msa0298400 AT5G39820.1 47.244 127 64 2 18 142 20 145 3.51e-36 135
Msa0298400 AT5G22290.2 38.428 229 80 8 98 321 2 174 3.90e-35 129
Msa0298400 AT3G12910.1 47.143 140 63 5 19 153 22 155 2.65e-33 126
Msa0298400 AT1G02230.1 41.379 174 88 7 21 188 6 171 3.36e-33 127
Msa0298400 AT4G01550.1 45.385 130 66 3 21 145 7 136 2.25e-29 119
Msa0298400 AT4G01540.4 40.805 174 91 7 21 188 7 174 3.88e-29 117
Msa0298400 AT4G01520.1 39.655 174 93 7 21 188 7 174 5.70e-29 114
Msa0298400 AT4G01540.2 40.805 174 91 7 21 188 7 174 5.99e-29 117
Msa0298400 AT4G01540.3 40.805 174 91 7 21 188 7 174 1.06e-28 116
Msa0298400 AT4G01540.1 40.805 174 91 7 21 188 7 174 1.23e-28 117
Msa0298400 AT4G10350.2 45.600 125 60 3 73 194 19 138 1.43e-28 113
Msa0298400 AT4G28530.1 41.096 146 67 3 15 142 7 151 9.06e-28 112
Msa0298400 AT5G22380.1 41.791 134 72 3 21 148 8 141 5.49e-27 107
Msa0298400 AT3G44350.2 40.000 150 83 5 21 163 8 157 3.51e-26 105
Msa0298400 AT3G04420.2 41.600 125 70 2 21 142 6 130 4.02e-26 107
Msa0298400 AT3G04420.1 41.600 125 70 2 21 142 6 130 7.02e-26 107
Msa0298400 AT5G61430.2 46.316 95 48 1 72 163 6 100 9.60e-26 105
Msa0298400 AT3G44350.1 44.094 127 66 4 21 142 8 134 1.18e-25 102
Msa0298400 AT1G02250.1 38.506 174 92 8 21 188 6 170 5.36e-25 105
Msa0298400 AT3G12977.2 44.681 94 46 2 74 163 20 111 8.13e-24 99.0
Msa0298400 AT1G02220.1 38.400 125 71 3 21 142 6 127 1.17e-22 99.0
Msa0298400 AT1G56010.1 43.000 100 52 3 74 168 8 107 1.47e-21 93.6
Msa0298400 AT2G33480.3 46.316 95 46 2 72 163 8 100 1.85e-21 92.0
Msa0298400 AT1G01010.1 37.288 177 89 9 21 186 6 171 2.08e-21 95.9
Msa0298400 AT5G64530.2 37.209 129 66 5 20 146 5 120 2.60e-20 87.4
Msa0298400 AT5G64530.1 37.209 129 66 5 20 146 5 120 1.45e-19 86.3
Msa0298400 AT3G10490.4 50.685 73 34 1 93 163 3 75 2.30e-17 83.2
Msa0298400 AT3G10490.3 50.685 73 34 1 93 163 3 75 2.30e-17 83.2
Msa0298400 AT4G28530.2 40.179 112 48 3 15 109 7 116 2.32e-17 82.4
Msa0298400 AT3G55210.1 29.697 165 100 3 12 163 5 166 2.49e-17 82.0
Msa0298400 AT3G04430.1 35.878 131 71 4 24 142 6 135 7.06e-17 79.0
Msa0298400 AT3G56530.1 30.137 146 99 2 20 163 54 198 2.55e-16 79.7
Msa0298400 AT2G43000.2 48.387 62 32 0 81 142 2 63 5.69e-14 70.5
Msa0298400 AT5G50820.1 32.283 127 73 4 20 142 19 136 2.04e-12 65.9
Msa0298400 AT2G18060.2 44.776 67 34 2 97 162 2 66 4.25e-12 66.6
Msa0298400 AT5G14000.2 30.709 127 83 2 21 145 18 141 4.26e-12 64.3
Msa0298400 AT5G14000.1 29.078 141 94 3 8 145 4 141 1.80e-11 63.5

Find 109 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCACGGCTATATTATTT+TGG 0.224338 2_3:-52370040 Msa0298400:CDS
AAATATTGTAGGAAAATTTC+AGG 0.231634 2_3:-52369988 Msa0298400:CDS
AGAATCTAAATTCACTAAAC+TGG 0.256195 2_3:-52369895 Msa0298400:three_prime_UTR
TGAGAATGTGCAAGGTTATT+TGG 0.272129 2_3:+52370224 None:intergenic
TCACTTTCATGTGAATTTAC+TGG 0.288594 2_3:+52370688 None:intergenic
ATCTAGCTAGGGTTTAATTA+AGG 0.296134 2_3:+52372308 None:intergenic
CACAACGGAGAATACGATTA+AGG 0.296370 2_3:-52370184 Msa0298400:CDS
TCTACTTGACGTTTATGATA+TGG 0.301749 2_3:-52369836 Msa0298400:three_prime_UTR
CATTCTGTCCTTTCACCCTT+AGG 0.318522 2_3:+52370977 None:intergenic
CATCAAACGATTGGTCATTC+TGG 0.319286 2_3:+52370085 None:intergenic
AAAAGAGCGCAACGTGAAAT+CGG 0.320485 2_3:-52371053 Msa0298400:CDS
ATGTATGTTTCAGGATTCTT+TGG 0.329361 2_3:-52370830 Msa0298400:intron
GATTGTTCTTTGCTTGGTTA+AGG 0.331262 2_3:+52372375 None:intergenic
TTCACTAAACTGGGTTTAAG+AGG 0.351295 2_3:-52369885 Msa0298400:three_prime_UTR
ATAACTGCTGCTTCCCCGTT+TGG 0.351801 2_3:+52370588 None:intergenic
ATTGTTCTTTGCTTGGTTAA+GGG 0.353309 2_3:+52372376 None:intergenic
AAAGATGGTACTAACCAAAA+AGG 0.355365 2_3:-52369680 Msa0298400:three_prime_UTR
CAGTTATGGTTCAGCTTCAA+TGG 0.373075 2_3:-52370572 Msa0298400:CDS
ATCACAATCACCTTTGCAAC+AGG 0.382519 2_3:-52372355 Msa0298400:five_prime_UTR
GAGCTACTGACTGTGGCTAT+TGG 0.383824 2_3:-52371087 Msa0298400:CDS
GATGGAGATAGTTGTTTCAA+AGG 0.388699 2_3:-52372217 Msa0298400:CDS
TCACTTAGGTCGTGCACCTA+AGG 0.393121 2_3:-52370993 Msa0298400:CDS
ATCTGATTGAATGAATGATT+TGG 0.404293 2_3:+52371171 None:intergenic
GATTGTGATTGTTCTTTGCT+TGG 0.406414 2_3:+52372369 None:intergenic
CACTTTCATGTGAATTTACT+GGG 0.413731 2_3:+52370689 None:intergenic
TTCTCCGTTGTGCAGTGCCT+TGG 0.417997 2_3:+52370195 None:intergenic
AGCAATGGAATTTAGAAACT+TGG 0.428246 2_3:+52369941 None:intergenic
AATAAAGAAGCTATCTAGCT+AGG 0.435379 2_3:+52372296 None:intergenic
AAAGAGAGGTGGGAAGAAGA+TGG 0.435629 2_3:-52372235 Msa0298400:exon
AAACAAGTTAGAAATATTGT+AGG 0.438564 2_3:-52369999 Msa0298400:CDS
GCTTTGTAAATATGAACCTT+GGG 0.442017 2_3:-52372055 Msa0298400:CDS
AAATCGGGTTCTAATGTCAT+AGG 0.442652 2_3:-52371037 Msa0298400:CDS
GGGTGGCAAGGTAAGGCAAG+TGG 0.449987 2_3:+52372396 None:intergenic
AAAGAGCGCAACGTGAAATC+GGG 0.454109 2_3:-52371052 Msa0298400:CDS
AGCTTTGTAAATATGAACCT+TGG 0.454874 2_3:-52372056 Msa0298400:CDS
GCTGCTTCGTCTATGTTCCC+TGG 0.458229 2_3:-52372177 Msa0298400:CDS
CGAACTTTGGTGTTTCACTT+AGG 0.463686 2_3:-52371007 Msa0298400:CDS
GCCGGTCTCCTAACCTCAAA+AGG 0.467399 2_3:-52369646 None:intergenic
ATTGTTATGCTGAGATACTA+AGG 0.473886 2_3:-52370301 Msa0298400:CDS
GGTTGATGGTAGTTCCAAAC+GGG 0.476342 2_3:-52370602 Msa0298400:CDS
AGCAAATATCATCAAACGAT+TGG 0.476940 2_3:+52370076 None:intergenic
TACTGGAGGTTCTAGAAAGA+TGG 0.477224 2_3:-52369695 Msa0298400:three_prime_UTR
GTGGCAAGGTAAGGCAAGTG+GGG 0.480931 2_3:+52372398 None:intergenic
AAACGGGGAAGCAGCAGTTA+TGG 0.485441 2_3:-52370586 Msa0298400:CDS
ATCAAAACTGATTCTGTGAG+AGG 0.493317 2_3:-52369763 Msa0298400:three_prime_UTR
TGACGTTTATGATATGGCTC+TGG 0.497614 2_3:-52369830 Msa0298400:three_prime_UTR
TGGTTAAGGGTGGCAAGGTA+AGG 0.499345 2_3:+52372389 None:intergenic
TCTGGCAAAGAAGCTACTCT+TGG 0.501988 2_3:+52370103 None:intergenic
ACAACGGAGAATACGATTAA+GGG 0.503506 2_3:-52370183 Msa0298400:CDS
GGTGGCAAGGTAAGGCAAGT+GGG 0.504045 2_3:+52372397 None:intergenic
GAACAAGAAAAGGAGGTTGA+TGG 0.507935 2_3:-52370616 Msa0298400:CDS
CGGTACTGATCATAGAGAAA+GGG 0.508013 2_3:-52370647 Msa0298400:CDS
ATAAAGAAGCTATCTAGCTA+GGG 0.511916 2_3:+52372297 None:intergenic
AGACTCTTCGGGCCAGCTAA+AGG 0.513022 2_3:-52370491 Msa0298400:intron
TGGCAAGGTAAGGCAAGTGG+GGG 0.514151 2_3:+52372399 None:intergenic
GGGTGTCTGCGAACAAGAAA+AGG 0.514695 2_3:-52370626 Msa0298400:CDS
CATAGGTACAAAGCGAACTT+TGG 0.517811 2_3:-52371020 Msa0298400:CDS
CACTTAGGTCGTGCACCTAA+GGG 0.525784 2_3:-52370992 Msa0298400:CDS
AATGAGTAAAGACAAAGAAG+TGG 0.532475 2_3:+52372442 None:intergenic
TCACTTTCATGTGAATGTAC+AGG 0.533418 2_3:+52370730 None:intergenic
ATTATTATTTGTGTGTTGAG+AGG 0.533539 2_3:-52372262 Msa0298400:five_prime_UTR
GCGGTACTGATCATAGAGAA+AGG 0.535249 2_3:-52370648 Msa0298400:CDS
CTGTGTCAGTGACAGGTCTC+CGG 0.535633 2_3:-52370939 Msa0298400:CDS
CGTTGTGCAGTGCCTTGGCA+TGG 0.537314 2_3:+52370200 None:intergenic
TGGTTGTTTGTCGTCTCAAG+AGG 0.540094 2_3:-52370810 Msa0298400:CDS
GTTCTTTGCTTGGTTAAGGG+TGG 0.542208 2_3:+52372379 None:intergenic
CGTGGAAGAAAATATCCAAA+TGG 0.543612 2_3:-52371124 Msa0298400:CDS
AGGTTGATGGTAGTTCCAAA+CGG 0.545938 2_3:-52370603 Msa0298400:CDS
GAATCTAAATTCACTAAACT+GGG 0.548189 2_3:-52369894 Msa0298400:three_prime_UTR
ACGAGTACTGTGTCAGTGAC+AGG 0.551156 2_3:-52370946 Msa0298400:CDS
TTGCTTGGTTAAGGGTGGCA+AGG 0.552854 2_3:+52372384 None:intergenic
TGTCAGTGACAGGTCTCCGG+TGG 0.553996 2_3:-52370936 Msa0298400:CDS
GAAATCAACTCTTCATCAGT+AGG 0.554061 2_3:+52372141 None:intergenic
TGTGGCTATTGGAAAGCCAC+TGG 0.560417 2_3:-52371076 Msa0298400:CDS
CAAAGAAGCTACTCTTGGAC+TGG 0.563143 2_3:+52370108 None:intergenic
TATGAACCTTGGGATTTACC+AGG 0.564230 2_3:-52372045 Msa0298400:intron
TGTTATGTAGATGGATGAAG+AGG 0.570365 2_3:-52370324 Msa0298400:intron
TCTTTGACTTACATTTCAGA+AGG 0.572409 2_3:+52369732 None:intergenic
TCAAAACTGATTCTGTGAGA+GGG 0.579783 2_3:-52369762 Msa0298400:three_prime_UTR
AGTGATTGTGCTATCTCAGA+AGG 0.585022 2_3:-52370670 Msa0298400:CDS
GTCGTGCACCTAAGGGTGAA+AGG 0.588146 2_3:-52370985 Msa0298400:CDS
CTAAGGGTGAAAGGACAGAA+TGG 0.589250 2_3:-52370976 Msa0298400:CDS
AAGTGTTCAAGTTATTTCTG+AGG 0.592202 2_3:-52372082 Msa0298400:CDS
ATATACAAAACCTGTTGCAA+AGG 0.595051 2_3:+52372345 None:intergenic
TTAGGAGACCGGCAACTGAA+AGG 0.595434 2_3:+52369656 None:intergenic
GATGAATCATCAATGTCTCA+AGG 0.597395 2_3:-52370260 Msa0298400:CDS
ACATTCAGATTATTACCCAC+CGG 0.609190 2_3:+52370920 None:intergenic
TGGTTCTTCTTCTCTCCCCG+TGG 0.613681 2_3:-52371142 Msa0298400:CDS
GCTGCGCGGTACAACAGCAA+TGG 0.617053 2_3:+52369926 None:intergenic
TAGGACAGAATCTAAAACCA+GGG 0.617924 2_3:+52372160 None:intergenic
ATATCATAAACGTCAAGTAG+AGG 0.618734 2_3:+52369838 None:intergenic
ACCTTACCTGGTAAATCCCA+AGG 0.619123 2_3:+52372039 None:intergenic
GCACATTCTCATCCATGCCA+AGG 0.629279 2_3:-52370212 Msa0298400:CDS
GCTCCTGGTTGAGAATGTGT+TGG 0.632511 2_3:+52370152 None:intergenic
GTAGGACAGAATCTAAAACC+AGG 0.635124 2_3:+52372159 None:intergenic
TCATTCAATCAGATAACGAG+TGG 0.635826 2_3:-52371162 Msa0298400:CDS
ATTGCTGTTGTACCGCGCAG+CGG 0.645129 2_3:-52369924 Msa0298400:three_prime_UTR
GTCAGTGACAGGTCTCCGGT+GGG 0.645594 2_3:-52370935 Msa0298400:CDS
AATCAGCGACCAGCTAATGA+CGG 0.647955 2_3:-52370523 Msa0298400:CDS
AGTAAAAGAGCTACTGACTG+TGG 0.648863 2_3:-52371094 Msa0298400:CDS
GGTACTGATCATAGAGAAAG+GGG 0.649597 2_3:-52370646 Msa0298400:CDS
TCACATGAAAGTGATTGTGC+TGG 0.661055 2_3:-52370721 Msa0298400:CDS
AAACCAACACATTCTCAACC+AGG 0.668307 2_3:-52370155 Msa0298400:CDS
GATTCTCTATGTCCGCTGCG+CGG 0.682997 2_3:+52369912 None:intergenic
TGTCTGCGAACAAGAAAAGG+AGG 0.695006 2_3:-52370623 Msa0298400:CDS
GATTGTGCTATCTCAGAAGG+CGG 0.697615 2_3:-52370667 Msa0298400:CDS
GGCATGGATGAGAATGTGCA+AGG 0.698005 2_3:+52370216 None:intergenic
CATGCCAAGGCACTGCACAA+CGG 0.707247 2_3:-52370199 Msa0298400:CDS
GTTGATGGTAGTTCCAAACG+GGG 0.760252 2_3:-52370601 Msa0298400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAGTTTTAAATATT+TGG - chr2_3:52370098-52370117 Msa0298400:CDS 10.0%
!! TTATTACCTTAGAAAAAAAT+TGG - chr2_3:52369972-52369991 Msa0298400:exon 15.0%
!!! ATACTTAGAATAGTTTTTTT+TGG - chr2_3:52370177-52370196 Msa0298400:CDS 15.0%
!!! ATAGTTTTTTTTGGCATATT+TGG - chr2_3:52370186-52370205 Msa0298400:CDS 20.0%
!!! ATTTTTCATATGTTGAAACT+TGG + chr2_3:52370414-52370433 None:intergenic 20.0%
!! AACATTTCTCAAATTATTAC+CGG + chr2_3:52370786-52370805 None:intergenic 20.0%
!!! CTTGTTTTTTAACATTCATA+GGG + chr2_3:52371207-52371226 None:intergenic 20.0%
!!! TCTTGTTTTTTAACATTCAT+AGG + chr2_3:52371208-52371227 None:intergenic 20.0%
!! CATAACAATATCATCATAAA+AGG + chr2_3:52371753-52371772 None:intergenic 20.0%
!!! ATATTATTTTGGTCTTCATT+TGG - chr2_3:52372061-52372080 Msa0298400:CDS 20.0%
!! AAACAAGTTAGAAATATTGT+AGG - chr2_3:52372091-52372110 Msa0298400:CDS 20.0%
!! AAATATTGTAGGAAAATTTC+AGG - chr2_3:52372102-52372121 Msa0298400:CDS 20.0%
!!! TATTTTTGGATGATATTTTG+TGG - chr2_3:52372288-52372307 Msa0298400:five_prime_UTR 20.0%
! ATTATTATTTGTGTGTTGAG+AGG - chr2_3:52369828-52369847 Msa0298400:three_prime_UTR 25.0%
! TACCTTAGAAAAAAATTGGA+TGG - chr2_3:52369976-52369995 Msa0298400:exon 25.0%
!!! TTTTTTTTGGCATATTTGGA+AGG - chr2_3:52370190-52370209 Msa0298400:CDS 25.0%
!!! CATCATTTTAATCATGCTTT+TGG - chr2_3:52370295-52370314 Msa0298400:CDS 25.0%
!!! TGAGCATTGAAAATGTTATT+TGG - chr2_3:52370446-52370465 Msa0298400:intron 25.0%
! CATTGTATGAATTTCATGTA+GGG - chr2_3:52370614-52370633 Msa0298400:CDS 25.0%
!! ATAATAATGAGAGGCATAAA+TGG + chr2_3:52370641-52370660 None:intergenic 25.0%
!! AAATTTTCTGCTGAGTTAAT+TGG + chr2_3:52370865-52370884 None:intergenic 25.0%
! ATCTGATTGAATGAATGATT+TGG + chr2_3:52370922-52370941 None:intergenic 25.0%
!!! TTGTTTGTTATGTATGTTTC+AGG - chr2_3:52371251-52371270 Msa0298400:intron 25.0%
!! ATCAATTTTATACCTTTAGC+TGG + chr2_3:52371614-52371633 None:intergenic 25.0%
! TGATGATATTGTTATGTAGA+TGG - chr2_3:52371757-52371776 Msa0298400:intron 25.0%
! AGAATCTAAATTCACTAAAC+TGG - chr2_3:52372195-52372214 Msa0298400:CDS 25.0%
! GAATCTAAATTCACTAAACT+GGG - chr2_3:52372196-52372215 Msa0298400:CDS 25.0%
AATGAGTAAAGACAAAGAAG+TGG + chr2_3:52369651-52369670 None:intergenic 30.0%
ATTGTTCTTTGCTTGGTTAA+GGG + chr2_3:52369717-52369736 None:intergenic 30.0%
ATATACAAAACCTGTTGCAA+AGG + chr2_3:52369748-52369767 None:intergenic 30.0%
ATCTAGCTAGGGTTTAATTA+AGG + chr2_3:52369785-52369804 None:intergenic 30.0%
ATAAAGAAGCTATCTAGCTA+GGG + chr2_3:52369796-52369815 None:intergenic 30.0%
AATAAAGAAGCTATCTAGCT+AGG + chr2_3:52369797-52369816 None:intergenic 30.0%
!!! GACCATCCAATTTTTTTCTA+AGG + chr2_3:52369981-52370000 None:intergenic 30.0%
!! AAGTGTTCAAGTTATTTCTG+AGG - chr2_3:52370008-52370027 Msa0298400:CDS 30.0%
! AGCTTTGTAAATATGAACCT+TGG - chr2_3:52370034-52370053 Msa0298400:CDS 30.0%
GCTTTGTAAATATGAACCTT+GGG - chr2_3:52370035-52370054 Msa0298400:CDS 30.0%
! CAACATACATATTTTCTGTG+TGG + chr2_3:52370474-52370493 None:intergenic 30.0%
CACACAGAAAATATGTATGT+TGG - chr2_3:52370472-52370491 Msa0298400:intron 30.0%
ACAGAAAATATGTATGTTGG+TGG - chr2_3:52370475-52370494 Msa0298400:intron 30.0%
CAGAAAATATGTATGTTGGT+GGG - chr2_3:52370476-52370495 Msa0298400:intron 30.0%
AAATAAATAAGAATCTCCCC+AGG + chr2_3:52370503-52370522 None:intergenic 30.0%
CAATATAAGTGTACAAACAG+AGG - chr2_3:52370561-52370580 Msa0298400:CDS 30.0%
GCATTGTATGAATTTCATGT+AGG - chr2_3:52370613-52370632 Msa0298400:CDS 30.0%
! ATATGTGTAGGTTTTTCATG+GGG + chr2_3:52370671-52370690 None:intergenic 30.0%
! CATATGTGTAGGTTTTTCAT+GGG + chr2_3:52370672-52370691 None:intergenic 30.0%
! ACATATGTGTAGGTTTTTCA+TGG + chr2_3:52370673-52370692 None:intergenic 30.0%
! ATTTGGATATTTTCTTCCAC+GGG + chr2_3:52370967-52370986 None:intergenic 30.0%
! CATTTGGATATTTTCTTCCA+CGG + chr2_3:52370968-52370987 None:intergenic 30.0%
! CTTTTACTTTGTGAACCATT+TGG + chr2_3:52370984-52371003 None:intergenic 30.0%
! TTTTTAACATTCATAGGGAG+AGG + chr2_3:52371202-52371221 None:intergenic 30.0%
ATGTATGTTTCAGGATTCTT+TGG - chr2_3:52371260-52371279 Msa0298400:intron 30.0%
CACTTTCATGTGAATTTACT+GGG + chr2_3:52371404-52371423 None:intergenic 30.0%
TCACTTTCATGTGAATTTAC+TGG + chr2_3:52371405-52371424 None:intergenic 30.0%
ATTGTTATGCTGAGATACTA+AGG - chr2_3:52371789-52371808 Msa0298400:intron 30.0%
AGCAAATATCATCAAACGAT+TGG + chr2_3:52372017-52372036 None:intergenic 30.0%
! TTTCTTCATTTTCACTCTCA+CGG - chr2_3:52372036-52372055 Msa0298400:intron 30.0%
!!! TTATTTTGGTCTTCATTTGG+TGG - chr2_3:52372064-52372083 Msa0298400:CDS 30.0%
AGCAATGGAATTTAGAAACT+TGG + chr2_3:52372152-52372171 None:intergenic 30.0%
ATATCATAAACGTCAAGTAG+AGG + chr2_3:52372255-52372274 None:intergenic 30.0%
TCTACTTGACGTTTATGATA+TGG - chr2_3:52372254-52372273 Msa0298400:five_prime_UTR 30.0%
! TCTTTGACTTACATTTCAGA+AGG + chr2_3:52372361-52372380 None:intergenic 30.0%
! AGATGACTGATATTTTGTAC+TGG - chr2_3:52372378-52372397 Msa0298400:five_prime_UTR 30.0%
AAAGATGGTACTAACCAAAA+AGG - chr2_3:52372410-52372429 Msa0298400:five_prime_UTR 30.0%
GATTGTTCTTTGCTTGGTTA+AGG + chr2_3:52369718-52369737 None:intergenic 35.0%
GATTGTGATTGTTCTTTGCT+TGG + chr2_3:52369724-52369743 None:intergenic 35.0%
TGTTGAGAGGAAAAAAAGAG+AGG - chr2_3:52369841-52369860 Msa0298400:three_prime_UTR 35.0%
! GATGGAGATAGTTGTTTCAA+AGG - chr2_3:52369873-52369892 Msa0298400:three_prime_UTR 35.0%
! TAGGACAGAATCTAAAACCA+GGG + chr2_3:52369933-52369952 None:intergenic 35.0%
GAAATCAACTCTTCATCAGT+AGG + chr2_3:52369952-52369971 None:intergenic 35.0%
GTGTGGGATTGTGAATTATT+GGG - chr2_3:52370212-52370231 Msa0298400:CDS 35.0%
! ATTAGCTTAGCTGGAATTGT+TGG - chr2_3:52370238-52370257 Msa0298400:CDS 35.0%
! CATTTTCAATGCTCAAAACG+TGG + chr2_3:52370441-52370460 None:intergenic 35.0%
! TATGTGTAGGTTTTTCATGG+GGG + chr2_3:52370670-52370689 None:intergenic 35.0%
TAGTGATAAGGAAACTACTC+AGG + chr2_3:52370697-52370716 None:intergenic 35.0%
! GATTGAATGAATGATTTGGC+TGG + chr2_3:52370918-52370937 None:intergenic 35.0%
TCATTCAATCAGATAACGAG+TGG - chr2_3:52370928-52370947 Msa0298400:CDS 35.0%
! TTTGGATATTTTCTTCCACG+GGG + chr2_3:52370966-52370985 None:intergenic 35.0%
CGTGGAAGAAAATATCCAAA+TGG - chr2_3:52370966-52370985 Msa0298400:CDS 35.0%
! AAATCGGGTTCTAATGTCAT+AGG - chr2_3:52371053-52371072 Msa0298400:CDS 35.0%
ACATTCAGATTATTACCCAC+CGG + chr2_3:52371173-52371192 None:intergenic 35.0%
TCACTTTCATGTGAATGTAC+AGG + chr2_3:52371363-52371382 None:intergenic 35.0%
CGTGTAATGTACTCATTCTA+CGG + chr2_3:52371667-52371686 None:intergenic 35.0%
! CTAGATTCAGCTTTTTGCAT+CGG - chr2_3:52371699-52371718 Msa0298400:intron 35.0%
TGTTATGTAGATGGATGAAG+AGG - chr2_3:52371766-52371785 Msa0298400:intron 35.0%
GATGAATCATCAATGTCTCA+AGG - chr2_3:52371830-52371849 Msa0298400:intron 35.0%
TGAGAATGTGCAAGGTTATT+TGG + chr2_3:52371869-52371888 None:intergenic 35.0%
ACAACGGAGAATACGATTAA+GGG - chr2_3:52371907-52371926 Msa0298400:intron 35.0%
! CTCTCACGGCTATATTATTT+TGG - chr2_3:52372050-52372069 Msa0298400:CDS 35.0%
TTCACTAAACTGGGTTTAAG+AGG - chr2_3:52372205-52372224 Msa0298400:CDS 35.0%
! ATCAAAACTGATTCTGTGAG+AGG - chr2_3:52372327-52372346 Msa0298400:five_prime_UTR 35.0%
! TCAAAACTGATTCTGTGAGA+GGG - chr2_3:52372328-52372347 Msa0298400:five_prime_UTR 35.0%
! TGACTGATATTTTGTACTGG+AGG - chr2_3:52372381-52372400 Msa0298400:five_prime_UTR 35.0%
ATCACAATCACCTTTGCAAC+AGG - chr2_3:52369735-52369754 Msa0298400:three_prime_UTR 40.0%
TGAGAGGAAAAAAAGAGAGG+TGG - chr2_3:52369844-52369863 Msa0298400:three_prime_UTR 40.0%
GAGAGGAAAAAAAGAGAGGT+GGG - chr2_3:52369845-52369864 Msa0298400:three_prime_UTR 40.0%
! GTAGGACAGAATCTAAAACC+AGG + chr2_3:52369934-52369953 None:intergenic 40.0%
TATGAACCTTGGGATTTACC+AGG - chr2_3:52370045-52370064 Msa0298400:CDS 40.0%
AAAGAAAGAGACACCTTACC+TGG + chr2_3:52370066-52370085 None:intergenic 40.0%
TTTCATGTGTTGTGTGTCGT+TGG - chr2_3:52370147-52370166 Msa0298400:CDS 40.0%
TTTGGCATATTTGGAAGGTG+TGG - chr2_3:52370195-52370214 Msa0298400:CDS 40.0%
! TTGGCATATTTGGAAGGTGT+GGG - chr2_3:52370196-52370215 Msa0298400:CDS 40.0%
GGTGTGGGATTGTGAATTAT+TGG - chr2_3:52370211-52370230 Msa0298400:CDS 40.0%
!! ATTGGGTTGATTAGCTTAGC+TGG - chr2_3:52370229-52370248 Msa0298400:CDS 40.0%
CATATGTTGAAACTTGGCAC+AGG + chr2_3:52370408-52370427 None:intergenic 40.0%
GTACAAACAGAGGACTTTCT+TGG - chr2_3:52370571-52370590 Msa0298400:CDS 40.0%
GGGGTCAACATAATAATGAG+AGG + chr2_3:52370650-52370669 None:intergenic 40.0%
! ATGTGTAGGTTTTTCATGGG+GGG + chr2_3:52370669-52370688 None:intergenic 40.0%
! TGTTAACGCATTTAGGGTGA+GGG + chr2_3:52370724-52370743 None:intergenic 40.0%
!! TGTCGGTGTTAACGCATTTA+GGG + chr2_3:52370730-52370749 None:intergenic 40.0%
TCGTGTCTATGTCAATGTGT+CGG + chr2_3:52370747-52370766 None:intergenic 40.0%
CGATAGTCATACATTGACAC+CGG - chr2_3:52370764-52370783 Msa0298400:CDS 40.0%
! AGTAAAAGAGCTACTGACTG+TGG - chr2_3:52370996-52371015 Msa0298400:CDS 40.0%
! AAAAGAGCGCAACGTGAAAT+CGG - chr2_3:52371037-52371056 Msa0298400:CDS 40.0%
CATAGGTACAAAGCGAACTT+TGG - chr2_3:52371070-52371089 Msa0298400:CDS 40.0%
!! CGAACTTTGGTGTTTCACTT+AGG - chr2_3:52371083-52371102 Msa0298400:CDS 40.0%
TAACATTCATAGGGAGAGGA+AGG + chr2_3:52371198-52371217 None:intergenic 40.0%
TCACATGAAAGTGATTGTGC+TGG - chr2_3:52371369-52371388 Msa0298400:intron 40.0%
AGTGATTGTGCTATCTCAGA+AGG - chr2_3:52371420-52371439 Msa0298400:intron 40.0%
!! CGGTACTGATCATAGAGAAA+GGG - chr2_3:52371443-52371462 Msa0298400:intron 40.0%
!! GGTACTGATCATAGAGAAAG+GGG - chr2_3:52371444-52371463 Msa0298400:intron 40.0%
GAACAAGAAAAGGAGGTTGA+TGG - chr2_3:52371474-52371493 Msa0298400:intron 40.0%
!! AGGTTGATGGTAGTTCCAAA+CGG - chr2_3:52371487-52371506 Msa0298400:intron 40.0%
CAGTTATGGTTCAGCTTCAA+TGG - chr2_3:52371518-52371537 Msa0298400:intron 40.0%
GTCAAAAAACCGTCATTAGC+TGG + chr2_3:52371579-52371598 None:intergenic 40.0%
!!! CGGTTTTTTGACAGACTCTT+CGG - chr2_3:52371587-52371606 Msa0298400:intron 40.0%
!!! GGTTTTTTGACAGACTCTTC+GGG - chr2_3:52371588-52371607 Msa0298400:intron 40.0%
CACAACGGAGAATACGATTA+AGG - chr2_3:52371906-52371925 Msa0298400:intron 40.0%
AAACCAACACATTCTCAACC+AGG - chr2_3:52371935-52371954 Msa0298400:intron 40.0%
! CATCAAACGATTGGTCATTC+TGG + chr2_3:52372008-52372027 None:intergenic 40.0%
TGACGTTTATGATATGGCTC+TGG - chr2_3:52372260-52372279 Msa0298400:five_prime_UTR 40.0%
!!! TGGCTCTGGAAGTGTATTTT+TGG - chr2_3:52372274-52372293 Msa0298400:five_prime_UTR 40.0%
!! TACTGGAGGTTCTAGAAAGA+TGG - chr2_3:52372395-52372414 Msa0298400:five_prime_UTR 40.0%
AAAAAGGACCTTTCAGTTGC+CGG - chr2_3:52372426-52372445 Msa0298400:five_prime_UTR 40.0%
GTTCTTTGCTTGGTTAAGGG+TGG + chr2_3:52369714-52369733 None:intergenic 45.0%
AAAGAGAGGTGGGAAGAAGA+TGG - chr2_3:52369855-52369874 Msa0298400:three_prime_UTR 45.0%
ACCTTGGGATTTACCAGGTA+AGG - chr2_3:52370050-52370069 Msa0298400:CDS 45.0%
ACCTTACCTGGTAAATCCCA+AGG + chr2_3:52370054-52370073 None:intergenic 45.0%
ATTGAAACCCTAGCCTGTGT+TGG - chr2_3:52370320-52370339 Msa0298400:intron 45.0%
TCATTCCGTGATACCAACAC+AGG + chr2_3:52370336-52370355 None:intergenic 45.0%
! TTGGCACAGGTTTGGTATCA+CGG + chr2_3:52370395-52370414 None:intergenic 45.0%
GTTGAAACTTGGCACAGGTT+TGG + chr2_3:52370403-52370422 None:intergenic 45.0%
! ATATGTATGTTGGTGGGACC+TGG - chr2_3:52370482-52370501 Msa0298400:intron 45.0%
! TATGTATGTTGGTGGGACCT+GGG - chr2_3:52370483-52370502 Msa0298400:intron 45.0%
CTACTCAGGCACATATGTGT+AGG + chr2_3:52370683-52370702 None:intergenic 45.0%
GGTGAGGGGATTTAGTGATA+AGG + chr2_3:52370709-52370728 None:intergenic 45.0%
! GTTAACGCATTTAGGGTGAG+GGG + chr2_3:52370723-52370742 None:intergenic 45.0%
! GTGTTAACGCATTTAGGGTG+AGG + chr2_3:52370725-52370744 None:intergenic 45.0%
!! GTGTCGGTGTTAACGCATTT+AGG + chr2_3:52370731-52370750 None:intergenic 45.0%
! AAAGAGCGCAACGTGAAATC+GGG - chr2_3:52371038-52371057 Msa0298400:CDS 45.0%
CATTCTGTCCTTTCACCCTT+AGG + chr2_3:52371116-52371135 None:intergenic 45.0%
CTAAGGGTGAAAGGACAGAA+TGG - chr2_3:52371114-52371133 Msa0298400:CDS 45.0%
TGGTTGTTTGTCGTCTCAAG+AGG - chr2_3:52371280-52371299 Msa0298400:intron 45.0%
GATTGTGCTATCTCAGAAGG+CGG - chr2_3:52371423-52371442 Msa0298400:intron 45.0%
!! GCGGTACTGATCATAGAGAA+AGG - chr2_3:52371442-52371461 Msa0298400:intron 45.0%
TGTCTGCGAACAAGAAAAGG+AGG - chr2_3:52371467-52371486 Msa0298400:intron 45.0%
!! GGTTGATGGTAGTTCCAAAC+GGG - chr2_3:52371488-52371507 Msa0298400:intron 45.0%
!! GTTGATGGTAGTTCCAAACG+GGG - chr2_3:52371489-52371508 Msa0298400:intron 45.0%
AATCAGCGACCAGCTAATGA+CGG - chr2_3:52371567-52371586 Msa0298400:intron 45.0%
!! GTTTTTGAGAAACGAGCTCC+TGG + chr2_3:52371956-52371975 None:intergenic 45.0%
CAAAGAAGCTACTCTTGGAC+TGG + chr2_3:52371985-52372004 None:intergenic 45.0%
TCTGGCAAAGAAGCTACTCT+TGG + chr2_3:52371990-52372009 None:intergenic 45.0%
! GGCAACTGAAAGGTCCTTTT+TGG + chr2_3:52372427-52372446 None:intergenic 45.0%
TGGTTAAGGGTGGCAAGGTA+AGG + chr2_3:52369704-52369723 None:intergenic 50.0%
TTGCTTGGTTAAGGGTGGCA+AGG + chr2_3:52369709-52369728 None:intergenic 50.0%
CGTGATACCAACACAGGCTA+GGG + chr2_3:52370330-52370349 None:intergenic 50.0%
! CCTAGCCTGTGTTGGTATCA+CGG - chr2_3:52370328-52370347 Msa0298400:intron 50.0%
! ATGTATGTTGGTGGGACCTG+GGG - chr2_3:52370484-52370503 Msa0298400:intron 50.0%
! GAGCTACTGACTGTGGCTAT+TGG - chr2_3:52371003-52371022 Msa0298400:CDS 50.0%
TGTGGCTATTGGAAAGCCAC+TGG - chr2_3:52371014-52371033 Msa0298400:CDS 50.0%
TCACTTAGGTCGTGCACCTA+AGG - chr2_3:52371097-52371116 Msa0298400:CDS 50.0%
CACTTAGGTCGTGCACCTAA+GGG - chr2_3:52371098-52371117 Msa0298400:CDS 50.0%
! ACGAGTACTGTGTCAGTGAC+AGG - chr2_3:52371144-52371163 Msa0298400:CDS 50.0%
GGGTGTCTGCGAACAAGAAA+AGG - chr2_3:52371464-52371483 Msa0298400:intron 50.0%
! ATAACTGCTGCTTCCCCGTT+TGG + chr2_3:52371505-52371524 None:intergenic 50.0%
AAACGGGGAAGCAGCAGTTA+TGG - chr2_3:52371504-52371523 Msa0298400:intron 50.0%
GGCATGGATGAGAATGTGCA+AGG + chr2_3:52371877-52371896 None:intergenic 50.0%
GCACATTCTCATCCATGCCA+AGG - chr2_3:52371878-52371897 Msa0298400:intron 50.0%
GCTCCTGGTTGAGAATGTGT+TGG + chr2_3:52371941-52371960 None:intergenic 50.0%
TTAGGAGACCGGCAACTGAA+AGG + chr2_3:52372437-52372456 None:intergenic 50.0%
! GGTAAGGCAAGTGGGGGTAT+GGG + chr2_3:52369688-52369707 None:intergenic 55.0%
AGGTAAGGCAAGTGGGGGTA+TGG + chr2_3:52369689-52369708 None:intergenic 55.0%
TGGCAAGGTAAGGCAAGTGG+GGG + chr2_3:52369694-52369713 None:intergenic 55.0%
GTGGCAAGGTAAGGCAAGTG+GGG + chr2_3:52369695-52369714 None:intergenic 55.0%
GGTGGCAAGGTAAGGCAAGT+GGG + chr2_3:52369696-52369715 None:intergenic 55.0%
GCTGCTTCGTCTATGTTCCC+TGG - chr2_3:52369913-52369932 Msa0298400:three_prime_UTR 55.0%
CCGTGATACCAACACAGGCT+AGG + chr2_3:52370331-52370350 None:intergenic 55.0%
! GCACAGGTTTGGTATCACGG+TGG + chr2_3:52370392-52370411 None:intergenic 55.0%
TGGTTCTTCTTCTCTCCCCG+TGG - chr2_3:52370948-52370967 Msa0298400:CDS 55.0%
! CACGTTGCGCTCTTTTCCAG+TGG + chr2_3:52371033-52371052 None:intergenic 55.0%
GTCGTGCACCTAAGGGTGAA+AGG - chr2_3:52371105-52371124 Msa0298400:CDS 55.0%
CTGTGTCAGTGACAGGTCTC+CGG - chr2_3:52371151-52371170 Msa0298400:CDS 55.0%
AGACTCTTCGGGCCAGCTAA+AGG - chr2_3:52371599-52371618 Msa0298400:intron 55.0%
!! CATGCCAAGGCACTGCACAA+CGG - chr2_3:52371891-52371910 Msa0298400:intron 55.0%
TTCTCCGTTGTGCAGTGCCT+TGG + chr2_3:52371898-52371917 None:intergenic 55.0%
! ATTGCTGTTGTACCGCGCAG+CGG - chr2_3:52372166-52372185 Msa0298400:CDS 55.0%
GATTCTCTATGTCCGCTGCG+CGG + chr2_3:52372181-52372200 None:intergenic 55.0%
! AGTGGGGGTATGGGAAGGGT+CGG + chr2_3:52369679-52369698 None:intergenic 60.0%
! GGCAAGTGGGGGTATGGGAA+GGG + chr2_3:52369683-52369702 None:intergenic 60.0%
! AGGCAAGTGGGGGTATGGGA+AGG + chr2_3:52369684-52369703 None:intergenic 60.0%
GGGTGGCAAGGTAAGGCAAG+TGG + chr2_3:52369697-52369716 None:intergenic 60.0%
TGTCAGTGACAGGTCTCCGG+TGG - chr2_3:52371154-52371173 Msa0298400:CDS 60.0%
GTCAGTGACAGGTCTCCGGT+GGG - chr2_3:52371155-52371174 Msa0298400:CDS 60.0%
CGTTGTGCAGTGCCTTGGCA+TGG + chr2_3:52371893-52371912 None:intergenic 60.0%
GCTGCGCGGTACAACAGCAA+TGG + chr2_3:52372167-52372186 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 52369648 52372464 52369648 ID=Msa0298400;Name=Msa0298400
chr2_3 mRNA 52369648 52372464 52369648 ID=Msa0298400-mRNA-1;Parent=Msa0298400;Name=Msa0298400-mRNA-1;_AED=0.21;_eAED=0.21;_QI=226|0.66|0.75|1|1|1|4|335|388
chr2_3 exon 52369648 52370336 52369648 ID=Msa0298400-mRNA-1:exon:16725;Parent=Msa0298400-mRNA-1
chr2_3 exon 52370492 52370839 52370492 ID=Msa0298400-mRNA-1:exon:16724;Parent=Msa0298400-mRNA-1
chr2_3 exon 52370922 52371193 52370922 ID=Msa0298400-mRNA-1:exon:16723;Parent=Msa0298400-mRNA-1
chr2_3 exon 52372046 52372464 52372046 ID=Msa0298400-mRNA-1:exon:16722;Parent=Msa0298400-mRNA-1
chr2_3 five_prime_UTR 52372239 52372464 52372239 ID=Msa0298400-mRNA-1:five_prime_utr;Parent=Msa0298400-mRNA-1
chr2_3 CDS 52372046 52372238 52372046 ID=Msa0298400-mRNA-1:cds;Parent=Msa0298400-mRNA-1
chr2_3 CDS 52370922 52371193 52370922 ID=Msa0298400-mRNA-1:cds;Parent=Msa0298400-mRNA-1
chr2_3 CDS 52370492 52370839 52370492 ID=Msa0298400-mRNA-1:cds;Parent=Msa0298400-mRNA-1
chr2_3 CDS 52369983 52370336 52369983 ID=Msa0298400-mRNA-1:cds;Parent=Msa0298400-mRNA-1
chr2_3 three_prime_UTR 52369648 52369982 52369648 ID=Msa0298400-mRNA-1:three_prime_utr;Parent=Msa0298400-mRNA-1
Gene Sequence

>Msa0298400

ATGGAGATAGTTGTTTCAAAGGAAGCTCAGATGTCTATTGCTGCTTCGTCTATGTTCCCTGGTTTTAGATTCTGTCCTACTGATGAAGAGTTGATTTCTTATTACCTTAGAAAAAAATTGGATGGTCATGAAGAAAGTGTTCAAGTTATTTCTGAGGTTGAGCTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAATATCCAAATGGTTCACAAAGTAAAAGAGCTACTGACTGTGGCTATTGGAAAGCCACTGGAAAAGAGCGCAACGTGAAATCGGGTTCTAATGTCATAGGTACAAAGCGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAGGGTGAAAGGACAGAATGGATTATGCACGAGTACTGTGTCAGTGACAGGTCTCCGGTGGGTAATAATCTGAATGATTCTTTGGTTGTTTGTCGTCTCAAGAGGAACACAGAGTTTCGTGTTAACGATGTTTCAAATAGAGCATCTTCAAGTCAAATAAATCCTGTACATTCACATGAAAGTGATTGTGCTGGTCAAATAAACCCAGTAAATTCACATGAAAGTGATTGTGCTATCTCAGAAGGCGGTACTGATCATAGAGAAAGGGGTGTCTGCGAACAAGAAAAGGAGGTTGATGGTAGTTCCAAACGGGGAAGCAGCAGTTATGGTTCAGCTTCAATGGAACAAATCGATTCTGTGTCTGAATCAAATCAGCGACCAGCTAATGACGGTTTTTTGACAGACTCTTCGGGCCAGCTAAAGATGGATGAAGAGGATTGTTATGCTGAGATACTAAGGAATGATATCATAAAATTAGATGAATCATCAATGTCTCAAGGAGCTCAAACAAGACCAAATAACCTTGCACATTCTCATCCATGCCAAGGCACTGCACAACGGAGAATACGATTAAGGGTTGCGAAACCAACACATTCTCAACCAGGAGCTCGTTTCTCAAAAACAAAGCACCAGTCCAAGAGTAGCTTCTTTGCCAGAATGACCAATCGTTTGATGATATTTGCTTTCTTCATTTTCACTCTCACGGCTATATTATTTTGGTCTTCATTTGGTGGTCACAAACAAGTTAGAAATATTGTAGGAAAATTTCAGGTGTAA
Protein sequence

>Msa0298400

MEIVVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVSDRSPVGNNLNDSLVVCRLKRNTEFRVNDVSNRASSSQINPVHSHESDCAGQINPVNSHESDCAISEGGTDHRERGVCEQEKEVDGSSKRGSSSYGSASMEQIDSVSESNQRPANDGFLTDSSGQLKMDEEDCYAEILRNDIIKLDESSMSQGAQTRPNNLAHSHPCQGTAQRRIRLRVAKPTHSQPGARFSKTKHQSKSSFFARMTNRLMIFAFFIFTLTAILFWSSFGGHKQVRNIVGKFQV*