Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478190 | XP_013462064.1 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478190 | sp|Q94AA4|PFKA3_ARATH | 81.458 | 480 | 85 | 3 | 1 | 480 | 1 | 476 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478190 | A0A072V223 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009290 | Msa0478190 | 0.823613 | 1.260471e-53 | -8.615850e-47 |
| Msa0021400 | Msa0478190 | 0.821625 | 3.655439e-53 | -8.615850e-47 |
| Msa0029700 | Msa0478190 | 0.854344 | 1.310521e-61 | -8.615850e-47 |
| Msa0039750 | Msa0478190 | 0.807060 | 6.078189e-50 | -8.615850e-47 |
| Msa0064960 | Msa0478190 | 0.819377 | 1.199300e-52 | -8.615850e-47 |
| Msa0072440 | Msa0478190 | 0.848531 | 5.774856e-60 | -8.615850e-47 |
| Msa0080020 | Msa0478190 | 0.865268 | 6.677786e-65 | -8.615850e-47 |
| Msa0098240 | Msa0478190 | 0.849325 | 3.477000e-60 | -8.615850e-47 |
| Msa0103830 | Msa0478190 | 0.844239 | 8.549684e-59 | -8.615850e-47 |
| Msa0110240 | Msa0478190 | 0.860444 | 2.057080e-63 | -8.615850e-47 |
| Msa0120860 | Msa0478190 | 0.849417 | 3.277869e-60 | -8.615850e-47 |
| Msa0124960 | Msa0478190 | 0.857895 | 1.194572e-62 | -8.615850e-47 |
| Msa0154730 | Msa0478190 | 0.861506 | 9.778242e-64 | -8.615850e-47 |
| Msa0156530 | Msa0478190 | 0.837650 | 4.586755e-57 | -8.615850e-47 |
| Msa0173600 | Msa0478190 | -0.801806 | 7.569203e-49 | -8.615850e-47 |
| Msa0186190 | Msa0478190 | 0.883902 | 3.027316e-71 | -8.615850e-47 |
| Msa0219280 | Msa0478190 | 0.801940 | 7.101534e-49 | -8.615850e-47 |
| Msa0227790 | Msa0478190 | 0.827278 | 1.708545e-54 | -8.615850e-47 |
| Msa0373550 | Msa0478190 | 0.808172 | 3.528881e-50 | -8.615850e-47 |
| Msa0376860 | Msa0478190 | 0.817064 | 4.002744e-52 | -8.615850e-47 |
| Msa0383930 | Msa0478190 | 0.946938 | 1.770760e-105 | -8.615850e-47 |
| Msa0384590 | Msa0478190 | 0.866986 | 1.908055e-65 | -8.615850e-47 |
| Msa0388210 | Msa0478190 | 0.828875 | 7.048814e-55 | -8.615850e-47 |
| Msa0422070 | Msa0478190 | 0.815530 | 8.819474e-52 | -8.615850e-47 |
| Msa0434370 | Msa0478190 | 0.948103 | 1.830510e-106 | -8.615850e-47 |
| Msa0434660 | Msa0478190 | 0.850513 | 1.617537e-60 | -8.615850e-47 |
| Msa0478130 | Msa0478190 | 0.985893 | 5.284420e-165 | -8.615850e-47 |
| Msa0478190 | Msa0514540 | 0.837705 | 4.439397e-57 | -8.615850e-47 |
| Msa0478190 | Msa0522290 | 0.850824 | 1.322911e-60 | -8.615850e-47 |
| Msa0478190 | Msa0522540 | 0.856534 | 3.015466e-62 | -8.615850e-47 |
| Msa0478190 | Msa0548420 | 0.823297 | 1.494505e-53 | -8.615850e-47 |
| Msa0478190 | Msa0570600 | 0.812246 | 4.668127e-51 | -8.615850e-47 |
| Msa0478190 | Msa0603310 | 0.813699 | 2.242755e-51 | -8.615850e-47 |
| Msa0478190 | Msa0615780 | 0.804492 | 2.104909e-49 | -8.615850e-47 |
| Msa0478190 | Msa0644340 | 0.808209 | 3.466215e-50 | -8.615850e-47 |
| Msa0478190 | Msa0655200 | 0.811743 | 6.010674e-51 | -8.615850e-47 |
| Msa0478190 | Msa0684150 | 0.803036 | 4.222311e-49 | -8.615850e-47 |
| Msa0478190 | Msa0695140 | 0.827171 | 1.812729e-54 | -8.615850e-47 |
| Msa0478190 | Msa0700410 | 0.813095 | 3.043767e-51 | -8.615850e-47 |
| Msa0478190 | Msa0707860 | -0.807369 | 5.228885e-50 | -8.615850e-47 |
| Msa0478190 | Msa0721930 | 0.803779 | 2.961832e-49 | -8.615850e-47 |
| Msa0478190 | Msa0762930 | 0.806042 | 9.965799e-50 | -8.615850e-47 |
| Msa0478190 | Msa0805390 | 0.823689 | 1.210160e-53 | -8.615850e-47 |
| Msa0478190 | Msa0921860 | 0.811851 | 5.693093e-51 | -8.615850e-47 |
| Msa0478190 | Msa0958830 | 0.841525 | 4.507909e-58 | -8.615850e-47 |
| Msa0478190 | Msa0970040 | 0.807592 | 4.689349e-50 | -8.615850e-47 |
| Msa0478190 | Msa1002970 | -0.806467 | 8.111561e-50 | -8.615850e-47 |
| Msa0478190 | Msa1026970 | 0.859174 | 4.964377e-63 | -8.615850e-47 |
| Msa0478190 | Msa1088400 | -0.810215 | 1.287723e-50 | -8.615850e-47 |
| Msa0478190 | Msa1111900 | 0.874232 | 7.932548e-68 | -8.615850e-47 |
| Msa0478190 | Msa1133760 | 0.861592 | 9.206790e-64 | -8.615850e-47 |
| Msa0478190 | Msa1146980 | 0.810811 | 9.575217e-51 | -8.615850e-47 |
| Msa0478190 | Msa1154310 | 0.861039 | 1.357182e-63 | -8.615850e-47 |
| Msa0478190 | Msa1197720 | 0.868765 | 5.117386e-66 | -8.615850e-47 |
| Msa0478190 | Msa1204240 | 0.801239 | 9.891826e-49 | -8.615850e-47 |
| Msa0478190 | Msa1251410 | 0.852929 | 3.342134e-61 | -8.615850e-47 |
| Msa0478190 | Msa1292140 | 0.801064 | 1.074173e-48 | -8.615850e-47 |
| Msa0478190 | Msa1361580 | -0.804308 | 2.299073e-49 | -8.615850e-47 |
| Msa0478190 | Msa1403940 | 0.847645 | 1.014540e-59 | -8.615850e-47 |
| Msa0478190 | Msa1429810 | 0.820083 | 8.270334e-53 | -8.615850e-47 |
| Msa0478190 | Msa1434300 | 0.835146 | 1.988867e-56 | -8.615850e-47 |
| Msa0258910 | Msa0478190 | 0.812481 | 4.148914e-51 | -8.615850e-47 |
| Msa0261460 | Msa0478190 | 0.810995 | 8.732804e-51 | -8.615850e-47 |
| Msa0261480 | Msa0478190 | 0.853883 | 1.780369e-61 | -8.615850e-47 |
| Msa0298400 | Msa0478190 | 0.815335 | 9.747736e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478190 | MtrunA17_Chr3g0140611 | 98.459 | 519 | 8 | 0 | 1 | 519 | 1 | 519 | 0.0 | 1060 |
| Msa0478190 | MtrunA17_Chr6g0487421 | 82.051 | 468 | 84 | 0 | 8 | 475 | 4 | 471 | 0.0 | 815 |
| Msa0478190 | MtrunA17_Chr8g0389631 | 82.301 | 452 | 79 | 1 | 7 | 457 | 6 | 457 | 0.0 | 792 |
| Msa0478190 | MtrunA17_Chr2g0330871 | 76.392 | 449 | 104 | 2 | 19 | 466 | 18 | 465 | 0.0 | 719 |
| Msa0478190 | MtrunA17_Chr1g0196891 | 72.383 | 449 | 123 | 1 | 16 | 464 | 82 | 529 | 0.0 | 700 |
| Msa0478190 | MtrunA17_Chr4g0076591 | 50.228 | 438 | 190 | 6 | 21 | 455 | 27 | 439 | 7.89e-151 | 438 |
| Msa0478190 | MtrunA17_Chr8g0367681 | 53.704 | 378 | 167 | 4 | 79 | 454 | 158 | 529 | 2.60e-134 | 399 |
| Msa0478190 | MtrunA17_Chr5g0412481 | 51.979 | 379 | 174 | 4 | 78 | 454 | 161 | 533 | 9.13e-132 | 393 |
| Msa0478190 | MtrunA17_Chr4g0030501 | 64.815 | 54 | 19 | 0 | 356 | 409 | 8 | 61 | 1.14e-17 | 78.2 |
| Msa0478190 | MtrunA17_Chr2g0289271 | 26.842 | 190 | 132 | 3 | 97 | 279 | 98 | 287 | 1.90e-11 | 66.6 |
| Msa0478190 | MtrunA17_Chr4g0075371 | 27.083 | 192 | 129 | 3 | 97 | 279 | 102 | 291 | 2.38e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478190 | AT4G26270.1 | 81.458 | 480 | 85 | 3 | 1 | 480 | 1 | 476 | 0.0 | 820 |
| Msa0478190 | AT5G56630.1 | 81.224 | 474 | 85 | 4 | 1 | 474 | 1 | 470 | 0.0 | 795 |
| Msa0478190 | AT4G29220.1 | 82.353 | 459 | 78 | 2 | 1 | 458 | 1 | 457 | 0.0 | 791 |
| Msa0478190 | AT4G32840.1 | 82.018 | 456 | 79 | 1 | 1 | 456 | 1 | 453 | 0.0 | 790 |
| Msa0478190 | AT5G61580.1 | 76.082 | 439 | 105 | 0 | 16 | 454 | 66 | 504 | 0.0 | 723 |
| Msa0478190 | AT5G61580.2 | 76.082 | 439 | 104 | 1 | 16 | 454 | 66 | 503 | 0.0 | 717 |
| Msa0478190 | AT5G47810.1 | 55.263 | 418 | 184 | 2 | 39 | 453 | 21 | 438 | 2.30e-167 | 481 |
| Msa0478190 | AT2G22480.1 | 53.968 | 378 | 166 | 4 | 79 | 454 | 166 | 537 | 5.97e-138 | 409 |
| Msa0478190 | AT4G04040.1 | 27.670 | 206 | 141 | 4 | 82 | 279 | 86 | 291 | 2.69e-12 | 69.7 |
| Msa0478190 | AT1G12000.1 | 27.083 | 192 | 129 | 3 | 97 | 279 | 100 | 289 | 4.25e-11 | 65.9 |
Find 148 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTCCACCAAATACAATTT+TGG | 0.181586 | 3_3:-82643655 | None:intergenic |
| CGGCGATCTGCCGACGTGTC+TGG | 0.196570 | 3_3:-82637876 | None:intergenic |
| TACTTCAAGATGTTGGTTTA+TGG | 0.202635 | 3_3:+82642152 | Msa0478190:CDS |
| TTCAACATGTGCTGCATTAA+TGG | 0.206437 | 3_3:-82641682 | None:intergenic |
| CTTTATTTGATGAACATCTT+TGG | 0.232102 | 3_3:-82643440 | None:intergenic |
| TTGTATTCCAAAATTGTATT+TGG | 0.240105 | 3_3:+82643648 | Msa0478190:three_prime_UTR |
| GAATCGTTCCTCCACGCTTA+TGG | 0.286336 | 3_3:-82639752 | None:intergenic |
| TTTATTTGATGAACATCTTT+GGG | 0.300163 | 3_3:-82643439 | None:intergenic |
| TACCGGGATGTCATTATCTA+TGG | 0.300219 | 3_3:-82641478 | None:intergenic |
| CTTACTCAGCTGATTAAGTT+TGG | 0.303852 | 3_3:+82643859 | Msa0478190:three_prime_UTR |
| TGGATGTCATTGACCACTTT+AGG | 0.304572 | 3_3:-82639732 | None:intergenic |
| TTGGTTCAGGTTTATATCAT+TGG | 0.329391 | 3_3:+82639992 | Msa0478190:intron |
| TGTTTCCAGAAGCATCCTTC+TGG | 0.336049 | 3_3:-82642126 | None:intergenic |
| CAGGCAGTACTTTGTGCATA+TGG | 0.344963 | 3_3:+82638414 | Msa0478190:intron |
| CTTGCTCAGAGTGCAGTTCA+TGG | 0.350658 | 3_3:+82642930 | Msa0478190:CDS |
| ACCCTTCCCTTCAAGGTAGA+AGG | 0.353106 | 3_3:-82641993 | None:intergenic |
| GGTGCAATGGCTGGGTATAC+TGG | 0.356523 | 3_3:+82642951 | Msa0478190:CDS |
| CACAACGTTGTTCATCTTCT+CGG | 0.359054 | 3_3:-82643356 | None:intergenic |
| AAGCGTGGAGGAACGATTCT+TGG | 0.367428 | 3_3:+82639756 | Msa0478190:CDS |
| CTAAAACTCTTGTAGAGATA+AGG | 0.374950 | 3_3:-82643963 | None:intergenic |
| CCGACGTGTCTGGGTGGGTC+TGG | 0.375082 | 3_3:-82637866 | None:intergenic |
| GGATTAGATCGAAGTGGATT+AGG | 0.375412 | 3_3:-82638272 | None:intergenic |
| GCCATTGTTCTTAAATATAT+AGG | 0.384279 | 3_3:+82642753 | Msa0478190:CDS |
| AAAGTCCACCCTTCCCTTCA+AGG | 0.386654 | 3_3:-82642000 | None:intergenic |
| ATCTAGTAACTTACGTTGAA+TGG | 0.388848 | 3_3:-82643014 | None:intergenic |
| TCCCTTCTAACAACTGAGTC+AGG | 0.397166 | 3_3:-82643477 | None:intergenic |
| TCCCTGACTCAGTTGTTAGA+AGG | 0.398852 | 3_3:+82643475 | Msa0478190:CDS |
| GAAAGAGAAAGAAAGAAGAA+AGG | 0.399998 | 3_3:-82637961 | None:intergenic |
| CATTGGTGTTGTAAAGCTAA+TGG | 0.401351 | 3_3:+82641725 | Msa0478190:CDS |
| CGTCGAAAATGAACACCTCT+TGG | 0.402495 | 3_3:-82638981 | None:intergenic |
| CCTGATTAATTCCCCGATCC+TGG | 0.409242 | 3_3:-82639824 | None:intergenic |
| TTCATATAATGAAGTTTCAT+AGG | 0.409709 | 3_3:+82643759 | Msa0478190:three_prime_UTR |
| GGCGATCTGCCGACGTGTCT+GGG | 0.409791 | 3_3:-82637875 | None:intergenic |
| TAGGTTATCGACAGGTCCTT+TGG | 0.411323 | 3_3:+82641627 | Msa0478190:intron |
| ATTCCCACTCAGTTGATAGA+AGG | 0.412182 | 3_3:+82643544 | Msa0478190:CDS |
| AGTTGACAGCATCCAGGATC+GGG | 0.419001 | 3_3:+82639812 | Msa0478190:CDS |
| TATTCCAAAATTGTATTTGG+TGG | 0.424483 | 3_3:+82643651 | Msa0478190:three_prime_UTR |
| TTTACACAGGGTGGTTATAG+AGG | 0.429359 | 3_3:+82639678 | Msa0478190:intron |
| GCAGTTCATGGTGCAATGGC+TGG | 0.433123 | 3_3:+82642942 | Msa0478190:CDS |
| CCAGGATCGGGGAATTAATC+AGG | 0.433988 | 3_3:+82639824 | Msa0478190:CDS |
| GGGTATACTGGATTCACTGC+TGG | 0.434313 | 3_3:+82642963 | Msa0478190:CDS |
| TAGGTTGTTGTTCACAAAGA+TGG | 0.437604 | 3_3:+82638957 | Msa0478190:intron |
| GAGTCACCCTTCTACCTTGA+AGG | 0.442197 | 3_3:+82641986 | Msa0478190:CDS |
| CAGATCCAACTTACATGATC+CGG | 0.445131 | 3_3:+82642865 | Msa0478190:intron |
| ACATGTGGTGGTCTCTGCCC+TGG | 0.450770 | 3_3:+82639154 | Msa0478190:CDS |
| GATTCTTTAGAGTGAAGAAA+TGG | 0.453915 | 3_3:+82638058 | Msa0478190:exon |
| CTGGCCTCAACACTGTCATA+AGG | 0.454068 | 3_3:+82639173 | Msa0478190:CDS |
| ATGGACCAGAAGGATGCTTC+TGG | 0.455785 | 3_3:+82642121 | Msa0478190:CDS |
| GGTGTGTCTAATTAAAGTAC+TGG | 0.459268 | 3_3:+82643735 | Msa0478190:three_prime_UTR |
| TGGCCTCAACACTGTCATAA+GGG | 0.467515 | 3_3:+82639174 | Msa0478190:CDS |
| TTTATGAATTTATTACGAAA+AGG | 0.468687 | 3_3:+82642020 | Msa0478190:CDS |
| GTTTATATCATTGGAGGAGA+TGG | 0.470046 | 3_3:+82640001 | Msa0478190:CDS |
| TGGCGATGCTGGTTACATAC+TGG | 0.471787 | 3_3:+82638118 | Msa0478190:CDS |
| AAGATCGTCCATGGCGATGC+TGG | 0.471954 | 3_3:+82638107 | Msa0478190:CDS |
| AACAAGCTACTTCAAGATGT+TGG | 0.473799 | 3_3:+82642145 | Msa0478190:CDS |
| GGATGACACCGTTCCTCAAA+AGG | 0.474449 | 3_3:+82638435 | Msa0478190:CDS |
| CTTATGACAGTGTTGAGGCC+AGG | 0.477976 | 3_3:-82639172 | None:intergenic |
| ACGTGCAGGACCTCGACAAA+AGG | 0.478582 | 3_3:+82639001 | Msa0478190:CDS |
| TTCACTGCTGGACTTGTGAA+TGG | 0.485445 | 3_3:+82642975 | Msa0478190:CDS |
| AGCGTGGAGGAACGATTCTT+GGG | 0.486903 | 3_3:+82639757 | Msa0478190:CDS |
| AAAGAAGAAAGGAAAGAGAG+TGG | 0.487272 | 3_3:-82637950 | None:intergenic |
| TACTTAACAACCGAGTAAGC+TGG | 0.487814 | 3_3:-82638293 | None:intergenic |
| GCTGAAAGAAAGTGGACATA+TGG | 0.488751 | 3_3:+82642042 | Msa0478190:CDS |
| GGTCTGAAAGTAGCAATTGC+TGG | 0.489039 | 3_3:+82641444 | Msa0478190:CDS |
| ATCTGCCGACGTGTCTGGGT+GGG | 0.491065 | 3_3:-82637871 | None:intergenic |
| TCAAGGTAGAAGGGTGACTC+TGG | 0.491308 | 3_3:-82641983 | None:intergenic |
| CATTACTTTAACTCCTAAAG+TGG | 0.494917 | 3_3:+82639719 | Msa0478190:CDS |
| AAGCTAATGGGTCGTTATAG+TGG | 0.497189 | 3_3:+82641738 | Msa0478190:CDS |
| TCGATCTAATCCAGCTTACT+CGG | 0.498259 | 3_3:+82638283 | Msa0478190:CDS |
| GTTCAGGTTTATATCATTGG+AGG | 0.500202 | 3_3:+82639995 | Msa0478190:intron |
| GTCGAAAATGAACACCTCTT+GGG | 0.504803 | 3_3:-82638980 | None:intergenic |
| TTATGACAGTGTTGAGGCCA+GGG | 0.506099 | 3_3:-82639171 | None:intergenic |
| TACGGTGTCGACAAAGTCCT+TGG | 0.508087 | 3_3:+82639223 | Msa0478190:CDS |
| TAGAGTGAAGAAATGGCGTC+AGG | 0.520087 | 3_3:+82638065 | Msa0478190:exon |
| TCAAGAAATAAAATTAGATA+AGG | 0.522244 | 3_3:+82643623 | Msa0478190:exon |
| ATGCATTGCTTGGAATTGCC+CGG | 0.523008 | 3_3:-82642884 | None:intergenic |
| ATTGGTGTTGTAAAGCTAAT+GGG | 0.524626 | 3_3:+82641726 | Msa0478190:CDS |
| TGTTTGATTAGGTTATCGAC+AGG | 0.526843 | 3_3:+82641619 | Msa0478190:intron |
| GGGTCTGGACCGTTCGTGTG+TGG | 0.533568 | 3_3:-82637851 | None:intergenic |
| ACACTGTCTGATGCATTGCT+TGG | 0.537565 | 3_3:-82642894 | None:intergenic |
| TGGCAGTGAGGATGCGAAGA+AGG | 0.537731 | 3_3:+82643513 | Msa0478190:CDS |
| ATGGATATCTCATAAGATCA+AGG | 0.539762 | 3_3:+82642171 | Msa0478190:CDS |
| CCCTGACTCAGTTGTTAGAA+GGG | 0.543143 | 3_3:+82643476 | Msa0478190:CDS |
| ACCCTTCTACCTTGAAGGGA+AGG | 0.543653 | 3_3:+82641991 | Msa0478190:CDS |
| AGGAGCTGCTGTGATTTATG+AGG | 0.550657 | 3_3:+82640033 | Msa0478190:CDS |
| CCCTTCCCTTCAAGGTAGAA+GGG | 0.551850 | 3_3:-82641992 | None:intergenic |
| TAGTTGACAGCATCCAGGAT+CGG | 0.553341 | 3_3:+82639811 | Msa0478190:CDS |
| ATTGCCCGGATCATGTAAGT+TGG | 0.554329 | 3_3:-82642870 | None:intergenic |
| ACGAAAAGGCTGAAAGAAAG+TGG | 0.554398 | 3_3:+82642034 | Msa0478190:CDS |
| CAAGATAGTTGACAGCATCC+AGG | 0.555399 | 3_3:+82639806 | Msa0478190:CDS |
| TTCCCACTCAGTTGATAGAA+GGG | 0.555630 | 3_3:+82643545 | Msa0478190:CDS |
| ACGATTCTTGGGACATCCCG+AGG | 0.556156 | 3_3:+82639768 | Msa0478190:CDS |
| ATAGTTATAGCTGAGGGAGC+AGG | 0.560671 | 3_3:+82642067 | Msa0478190:CDS |
| AGATCCAACTTACATGATCC+GGG | 0.560914 | 3_3:+82642866 | Msa0478190:intron |
| TGTGGTCTTTCTTACATGTA+CGG | 0.563095 | 3_3:+82639205 | Msa0478190:CDS |
| AACCATAGATAATGACATCC+CGG | 0.563261 | 3_3:+82641476 | Msa0478190:CDS |
| CATGCAAGACATGGACCAGA+AGG | 0.565078 | 3_3:+82642111 | Msa0478190:CDS |
| CACTTTAGGAGTTAAAGTAA+TGG | 0.565776 | 3_3:-82639718 | None:intergenic |
| CGATTCTTGGGACATCCCGA+GGG | 0.578094 | 3_3:+82639769 | Msa0478190:CDS |
| TACAGAAAGCATGCAAGACA+TGG | 0.580338 | 3_3:+82642102 | Msa0478190:CDS |
| AGTCACCCTTCTACCTTGAA+GGG | 0.585876 | 3_3:+82641987 | Msa0478190:CDS |
| GAAGGGAGCAATTGCAATGG+TGG | 0.587091 | 3_3:+82643493 | Msa0478190:CDS |
| CAGTTCATGGTGCAATGGCT+GGG | 0.590436 | 3_3:+82642943 | Msa0478190:CDS |
| ACCTATATATTTAAGAACAA+TGG | 0.594094 | 3_3:-82642754 | None:intergenic |
| GCTTGTATTGTCACATGTGG+TGG | 0.594598 | 3_3:+82639142 | Msa0478190:CDS |
| CCCTTCTACCTTGAAGGGAA+GGG | 0.594930 | 3_3:+82641992 | Msa0478190:CDS |
| TTCTACCTTGAAGGGAAGGG+TGG | 0.595567 | 3_3:+82641995 | Msa0478190:CDS |
| TTGTGATTACTGACAGAATG+TGG | 0.596485 | 3_3:+82643374 | Msa0478190:CDS |
| GTATGTAACCAGCATCGCCA+TGG | 0.602485 | 3_3:-82638115 | None:intergenic |
| TCCCCTTCTATCAACTGAGT+GGG | 0.604482 | 3_3:-82643547 | None:intergenic |
| AGGAAGATTTGGAACGTAGT+CGG | 0.608157 | 3_3:-82638159 | None:intergenic |
| GTCAATGACATCCATAAGCG+TGG | 0.610080 | 3_3:+82639741 | Msa0478190:CDS |
| TTCTTGGGACATCCCGAGGG+GGG | 0.614995 | 3_3:+82639772 | Msa0478190:CDS |
| TCACAGATGAAGATCGTCCA+TGG | 0.624098 | 3_3:+82638098 | Msa0478190:CDS |
| GAAAGTGTTGAGAATGGCAT+TGG | 0.625093 | 3_3:+82641708 | Msa0478190:CDS |
| TTTCCCTTATGACAGTGTTG+AGG | 0.626794 | 3_3:-82639177 | None:intergenic |
| AGCCACTCACATCTATGCCA+AGG | 0.627188 | 3_3:-82639240 | None:intergenic |
| GAGTGCAGTTCATGGTGCAA+TGG | 0.628896 | 3_3:+82642938 | Msa0478190:CDS |
| ATTCTTGGGACATCCCGAGG+GGG | 0.629130 | 3_3:+82639771 | Msa0478190:CDS |
| GATCTGCCGACGTGTCTGGG+TGG | 0.630440 | 3_3:-82637872 | None:intergenic |
| ATTGCTTGTATTGTCACATG+TGG | 0.630601 | 3_3:+82639139 | Msa0478190:CDS |
| ATGGTCATAGTTATAGCTGA+GGG | 0.632087 | 3_3:+82642061 | Msa0478190:CDS |
| TACTCTTGCTAGTAGAGATG+TGG | 0.632402 | 3_3:+82641946 | Msa0478190:CDS |
| CCCTTCTAACAACTGAGTCA+GGG | 0.632890 | 3_3:-82643476 | None:intergenic |
| AACTGCGGTATCAAAACCAA+AGG | 0.633694 | 3_3:-82641643 | None:intergenic |
| GTCCCCTTCTATCAACTGAG+TGG | 0.636892 | 3_3:-82643548 | None:intergenic |
| TATGGTCATAGTTATAGCTG+AGG | 0.638112 | 3_3:+82642060 | Msa0478190:CDS |
| AGCTGATTAAGTTTGGCACA+AGG | 0.638717 | 3_3:+82643866 | Msa0478190:three_prime_UTR |
| GGAACGTAGTCGGAGAGATG+AGG | 0.638776 | 3_3:-82638149 | None:intergenic |
| GAAGCTGAAAGTGTTGAGAA+TGG | 0.642124 | 3_3:+82641702 | Msa0478190:CDS |
| CATCCATCTCCACACACGAA+CGG | 0.642556 | 3_3:+82637842 | None:intergenic |
| TCCCACTCAGTTGATAGAAG+GGG | 0.643504 | 3_3:+82643546 | Msa0478190:CDS |
| TTATCATACAGGAAGTTAGA+CGG | 0.646291 | 3_3:+82641418 | Msa0478190:intron |
| TAAGCTGGATTAGATCGAAG+TGG | 0.651196 | 3_3:-82638278 | None:intergenic |
| GTTGACAGCATCCAGGATCG+GGG | 0.664069 | 3_3:+82639813 | Msa0478190:CDS |
| GTTCACAAAGATGGCCCAAG+AGG | 0.667902 | 3_3:+82638966 | Msa0478190:CDS |
| GATTCTTGGGACATCCCGAG+GGG | 0.672975 | 3_3:+82639770 | Msa0478190:CDS |
| GTAAGAGACTACTTGTGTGA+AGG | 0.674286 | 3_3:-82643841 | None:intergenic |
| TTAGAAGGGAGCAATTGCAA+TGG | 0.676659 | 3_3:+82643490 | Msa0478190:CDS |
| TGCAACTGTCACTGTCAGCG+AGG | 0.681592 | 3_3:-82643600 | None:intergenic |
| GGAGGAGATGGAACACAGCG+AGG | 0.687653 | 3_3:+82640013 | Msa0478190:CDS |
| ATACAGGAAGTTAGACGGCG+AGG | 0.691856 | 3_3:+82641423 | Msa0478190:intron |
| ACGTTGAGCCTCCTCAACTG+CGG | 0.700198 | 3_3:-82641658 | None:intergenic |
| TGTGATTACTGACAGAATGT+GGG | 0.717274 | 3_3:+82643375 | Msa0478190:CDS |
| CAATTGCAATGGTGGCAGTG+AGG | 0.727536 | 3_3:+82643501 | Msa0478190:CDS |
| GTCATAAGGGAAATTGTGTG+TGG | 0.728717 | 3_3:+82639187 | Msa0478190:CDS |
| AATGACATCCATAAGCGTGG+AGG | 0.732879 | 3_3:+82639744 | Msa0478190:CDS |
| CCAGACCCACCCAGACACGT+CGG | 0.742227 | 3_3:+82637866 | Msa0478190:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAATAAATATAAAAAAAC+TGG | - | chr3_3:82642610-82642629 | None:intergenic | 10.0% |
| !! | AAAAACCATAAATAAAAAAT+TGG | - | chr3_3:82643266-82643285 | None:intergenic | 10.0% |
| !!! | TACTATTTTTTCTTTGTTTT+TGG | - | chr3_3:82638022-82638041 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTTGTAAATTAC+TGG | + | chr3_3:82639389-82639408 | Msa0478190:intron | 15.0% |
| !! | TAATAGAATATTCCTTTATT+TGG | + | chr3_3:82640078-82640097 | Msa0478190:intron | 15.0% |
| !! | TACAGAATTCAAAATTAATT+TGG | - | chr3_3:82640274-82640293 | None:intergenic | 15.0% |
| !! | TCCTAAAAATTAAAAAGAAA+CGG | - | chr3_3:82640909-82640928 | None:intergenic | 15.0% |
| !! | AATGAAATAATAAATGATTC+GGG | - | chr3_3:82641006-82641025 | None:intergenic | 15.0% |
| !! | GAATGAAATAATAAATGATT+CGG | - | chr3_3:82641007-82641026 | None:intergenic | 15.0% |
| !! | ATTGAAATTTGAATATTACA+AGG | + | chr3_3:82641090-82641109 | Msa0478190:intron | 15.0% |
| !! | TTTATGAATTTATTACGAAA+AGG | + | chr3_3:82642020-82642039 | Msa0478190:CDS | 15.0% |
| !!! | TTATGCTATATAATTTGTTT+AGG | - | chr3_3:82642269-82642288 | None:intergenic | 15.0% |
| !! | TAAAAAAACTAATCCAAATA+GGG | - | chr3_3:82642393-82642412 | None:intergenic | 15.0% |
| !! | ATAAAAATTAAGATGTAGAA+TGG | + | chr3_3:82642430-82642449 | Msa0478190:intron | 15.0% |
| !! | AAGTTGAATGTTTATTAAAA+GGG | - | chr3_3:82642696-82642715 | None:intergenic | 15.0% |
| !! | TCAAGAAATAAAATTAGATA+AGG | + | chr3_3:82643623-82643642 | Msa0478190:exon | 15.0% |
| !!! | TTTTTGGATTTTCGAATTAA+CGG | - | chr3_3:82638006-82638025 | None:intergenic | 20.0% |
| !! | CAAATGTAACTGAAAAAATT+GGG | - | chr3_3:82638205-82638224 | None:intergenic | 20.0% |
| !! | AAAAGTAGAAAATCAACATT+TGG | - | chr3_3:82638386-82638405 | None:intergenic | 20.0% |
| !!! | TTTAAAGTAACAAACATGAA+TGG | - | chr3_3:82638658-82638677 | None:intergenic | 20.0% |
| !!! | CTGAATGTTTGTTATTATTA+CGG | + | chr3_3:82638842-82638861 | Msa0478190:intron | 20.0% |
| !! | TTGAAAAGAAGAAAAAACAA+GGG | - | chr3_3:82640550-82640569 | None:intergenic | 20.0% |
| !! | TTTGAAAAGAAGAAAAAACA+AGG | - | chr3_3:82640551-82640570 | None:intergenic | 20.0% |
| !!! | TCCGTTTCTTTTTAATTTTT+AGG | + | chr3_3:82640905-82640924 | Msa0478190:intron | 20.0% |
| !! | ATGAAATAATAAATGATTCG+GGG | - | chr3_3:82641005-82641024 | None:intergenic | 20.0% |
| !! | AATTTGAATATTACAAGGAA+CGG | + | chr3_3:82641095-82641114 | Msa0478190:intron | 20.0% |
| !! | CAAAATAGAAAACATATGTA+CGG | - | chr3_3:82641324-82641343 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCGTGTTGTAA+TGG | + | chr3_3:82641889-82641908 | Msa0478190:intron | 20.0% |
| !!! | TATATAATTTGTTTAGGAAG+AGG | - | chr3_3:82642263-82642282 | None:intergenic | 20.0% |
| !! | AAAAAAACTAATCCAAATAG+GGG | - | chr3_3:82642392-82642411 | None:intergenic | 20.0% |
| !! | CTAAAAAAACTAATCCAAAT+AGG | - | chr3_3:82642394-82642413 | None:intergenic | 20.0% |
| !!! | CAAGTTGAATGTTTATTAAA+AGG | - | chr3_3:82642697-82642716 | None:intergenic | 20.0% |
| !! | ACCTATATATTTAAGAACAA+TGG | - | chr3_3:82642757-82642776 | None:intergenic | 20.0% |
| !! | TGTTATTGATATATATCAAG+TGG | + | chr3_3:82643089-82643108 | Msa0478190:intron | 20.0% |
| !! | ATAAAAAATTGGATGCAAAT+AGG | - | chr3_3:82643255-82643274 | None:intergenic | 20.0% |
| !!! | TGCATCCAATTTTTTATTTA+TGG | + | chr3_3:82643258-82643277 | Msa0478190:intron | 20.0% |
| !! | TTTATTTGATGAACATCTTT+GGG | - | chr3_3:82643442-82643461 | None:intergenic | 20.0% |
| !!! | AAATACAATTTTGGAATACA+AGG | - | chr3_3:82643649-82643668 | None:intergenic | 20.0% |
| !! | TTGTATTCCAAAATTGTATT+TGG | + | chr3_3:82643648-82643667 | Msa0478190:three_prime_UTR | 20.0% |
| !!! | AGGCTTATTTTTGTAAAATT+TGG | + | chr3_3:82643712-82643731 | Msa0478190:three_prime_UTR | 20.0% |
| !!! | GGCTTATTTTTGTAAAATTT+GGG | + | chr3_3:82643713-82643732 | Msa0478190:three_prime_UTR | 20.0% |
| !!! | GCTTATTTTTGTAAAATTTG+GGG | + | chr3_3:82643714-82643733 | Msa0478190:three_prime_UTR | 20.0% |
| !! | TTCATATAATGAAGTTTCAT+AGG | + | chr3_3:82643759-82643778 | Msa0478190:three_prime_UTR | 20.0% |
| !!! | TTACAGACATTTTATGAAAT+GGG | - | chr3_3:82643808-82643827 | None:intergenic | 20.0% |
| !!! | ATTACAGACATTTTATGAAA+TGG | - | chr3_3:82643809-82643828 | None:intergenic | 20.0% |
| !!! | GAAACGTTTGCTTATTTTTT+CGG | - | chr3_3:82637899-82637918 | None:intergenic | 25.0% |
| ! | GCAAATGTAACTGAAAAAAT+TGG | - | chr3_3:82638206-82638225 | None:intergenic | 25.0% |
| !! | TTTGGAATAACTAACACATT+TGG | - | chr3_3:82638368-82638387 | None:intergenic | 25.0% |
| !!! | TTTCTACTTTTTGTGATTTC+AGG | + | chr3_3:82638395-82638414 | Msa0478190:intron | 25.0% |
| ! | AATGAAGAAAATGAACAAAC+AGG | - | chr3_3:82638491-82638510 | None:intergenic | 25.0% |
| !! | GTAAGAAGACTTTTTAATGA+CGG | + | chr3_3:82638747-82638766 | Msa0478190:intron | 25.0% |
| ! | TACCTATACAACAATTTACT+AGG | - | chr3_3:82639098-82639117 | None:intergenic | 25.0% |
| !!! | CTCTTTTAACTTATTCTCAT+TGG | + | chr3_3:82639268-82639287 | Msa0478190:intron | 25.0% |
| !!! | TTCAATTACTTTTGTCCATT+TGG | - | chr3_3:82639480-82639499 | None:intergenic | 25.0% |
| ! | TAAAATTAGATATAGCTCAG+TGG | - | chr3_3:82639662-82639681 | None:intergenic | 25.0% |
| !! | AGCTATATCTAATTTTACAC+AGG | + | chr3_3:82639665-82639684 | Msa0478190:intron | 25.0% |
| !! | GCTATATCTAATTTTACACA+GGG | + | chr3_3:82639666-82639685 | Msa0478190:intron | 25.0% |
| !! | TTGGAAACTTTTGTAGAATA+TGG | - | chr3_3:82639871-82639890 | None:intergenic | 25.0% |
| !! | ATATCAATGTTAACTTGAGT+AGG | + | chr3_3:82639933-82639952 | Msa0478190:intron | 25.0% |
| ! | TCTTCACAATACAATTGATT+AGG | + | chr3_3:82640244-82640263 | Msa0478190:intron | 25.0% |
| ! | CATTTAAATAAGTTACTGAC+AGG | + | chr3_3:82640390-82640409 | Msa0478190:intron | 25.0% |
| !!! | CCATTCAAATTTCACTTTTA+TGG | - | chr3_3:82640754-82640773 | None:intergenic | 25.0% |
| ! | CCATAAAAGTGAAATTTGAA+TGG | + | chr3_3:82640751-82640770 | Msa0478190:intron | 25.0% |
| !! | TGTATATGATTTTCACTTGA+AGG | - | chr3_3:82640793-82640812 | None:intergenic | 25.0% |
| !! | GCATTTGAAGTTTAAGATTA+AGG | - | chr3_3:82640817-82640836 | None:intergenic | 25.0% |
| ! | GTAGATATATAACAAGGAAA+CGG | - | chr3_3:82640843-82640862 | None:intergenic | 25.0% |
| ! | ACTTCAGTAGATATATAACA+AGG | - | chr3_3:82640849-82640868 | None:intergenic | 25.0% |
| !! | TGAACATAATCGTGAATTTT+TGG | + | chr3_3:82640872-82640891 | Msa0478190:intron | 25.0% |
| ! | AATTAAAAAGAAACGGATAG+TGG | - | chr3_3:82640902-82640921 | None:intergenic | 25.0% |
| !!! | ACAAAATTTGTTGATCATCT+TGG | - | chr3_3:82640945-82640964 | None:intergenic | 25.0% |
| ! | AAATATTGAAAAGGAACAGT+GGG | + | chr3_3:82641161-82641180 | Msa0478190:intron | 25.0% |
| !! | ATGTCATTATCTATGGTTTT+TGG | - | chr3_3:82641474-82641493 | None:intergenic | 25.0% |
| !!! | GATTAGTTTTTTTAGCAGAT+GGG | + | chr3_3:82642399-82642418 | Msa0478190:intron | 25.0% |
| !! | TATTTAGTATCTTCTGAAAG+TGG | - | chr3_3:82642536-82642555 | None:intergenic | 25.0% |
| !!! | ATAATTTTTTGTGCATTGAG+TGG | - | chr3_3:82642569-82642588 | None:intergenic | 25.0% |
| ! | GCCATTGTTCTTAAATATAT+AGG | + | chr3_3:82642753-82642772 | Msa0478190:CDS | 25.0% |
| ! | ATACAACGAATAGATCAAAA+TGG | - | chr3_3:82642804-82642823 | None:intergenic | 25.0% |
| ! | AAAACGAACTTGATTTATAC+AGG | - | chr3_3:82643189-82643208 | None:intergenic | 25.0% |
| !! | CTTTATTTGATGAACATCTT+TGG | - | chr3_3:82643443-82643462 | None:intergenic | 25.0% |
| ! | TATTCCAAAATTGTATTTGG+TGG | + | chr3_3:82643651-82643670 | Msa0478190:three_prime_UTR | 25.0% |
| GAAAGAGAAAGAAAGAAGAA+AGG | - | chr3_3:82637964-82637983 | None:intergenic | 30.0% | |
| !! | GATTCTTTAGAGTGAAGAAA+TGG | + | chr3_3:82638058-82638077 | Msa0478190:exon | 30.0% |
| GAGAAAAATACAGGAAGATT+TGG | - | chr3_3:82638173-82638192 | None:intergenic | 30.0% | |
| AGAAAGAGAGAGAAAAATAC+AGG | - | chr3_3:82638182-82638201 | None:intergenic | 30.0% | |
| !! | ATATAGAACCTTTTGAGGAA+CGG | - | chr3_3:82638446-82638465 | None:intergenic | 30.0% |
| ! | AACAGATATAGAACCTTTTG+AGG | - | chr3_3:82638451-82638470 | None:intergenic | 30.0% |
| CATCAGTTAGTAATCAATCA+AGG | - | chr3_3:82638789-82638808 | None:intergenic | 30.0% | |
| ACTAACTGATGCTTACATTA+AGG | + | chr3_3:82638798-82638817 | Msa0478190:intron | 30.0% | |
| TTTACTGAAATCAGAGAAAG+AGG | + | chr3_3:82638872-82638891 | Msa0478190:intron | 30.0% | |
| ! | TTGTTTGTACACGTGTTATT+AGG | + | chr3_3:82639036-82639055 | Msa0478190:intron | 30.0% |
| GACCTAGTAAATTGTTGTAT+AGG | + | chr3_3:82639093-82639112 | Msa0478190:intron | 30.0% | |
| ! | CATTACATTATTTGTTGCTC+TGG | + | chr3_3:82639292-82639311 | Msa0478190:intron | 30.0% |
| TTCACAAATGGAAAAGGATA+TGG | - | chr3_3:82639449-82639468 | None:intergenic | 30.0% | |
| ! | TATCCTTTTCCATTTGTGAA+AGG | + | chr3_3:82639449-82639468 | Msa0478190:intron | 30.0% |
| !!! | CACTTTACTTTTTGTCACAT+CGG | + | chr3_3:82639596-82639615 | Msa0478190:intron | 30.0% |
| AGTTGCATTTCTTGATTCAT+TGG | + | chr3_3:82639631-82639650 | Msa0478190:intron | 30.0% | |
| ! | ATATCTAATTTTACACAGGG+TGG | + | chr3_3:82639669-82639688 | Msa0478190:intron | 30.0% |
| ! | CACTTTAGGAGTTAAAGTAA+TGG | - | chr3_3:82639721-82639740 | None:intergenic | 30.0% |
| CATTACTTTAACTCCTAAAG+TGG | + | chr3_3:82639719-82639738 | Msa0478190:CDS | 30.0% | |
| TTTCCAATGATACTGAATGA+TGG | + | chr3_3:82639884-82639903 | Msa0478190:intron | 30.0% | |
| ATTCCATCATTCAGTATCAT+TGG | - | chr3_3:82639890-82639909 | None:intergenic | 30.0% | |
| !! | ATTTTCACTGTTTGGGTTAT+TGG | + | chr3_3:82639973-82639992 | Msa0478190:intron | 30.0% |
| ! | TTGGTTCAGGTTTATATCAT+TGG | + | chr3_3:82639992-82640011 | Msa0478190:intron | 30.0% |
| !!! | TATGCTCTTATTTTCCTTAC+TGG | - | chr3_3:82640107-82640126 | None:intergenic | 30.0% |
| ! | CTTTAGCTCAAATTTGGAAA+AGG | - | chr3_3:82640435-82640454 | None:intergenic | 30.0% |
| ! | CAACAACTTTAGCTCAAATT+TGG | - | chr3_3:82640441-82640460 | None:intergenic | 30.0% |
| CAAATTTGAGCTAAAGTTGT+TGG | + | chr3_3:82640439-82640458 | Msa0478190:intron | 30.0% | |
| AAGAAGAAAAAACAAGGGAA+GGG | - | chr3_3:82640545-82640564 | None:intergenic | 30.0% | |
| AAAGAAGAAAAAACAAGGGA+AGG | - | chr3_3:82640546-82640565 | None:intergenic | 30.0% | |
| TTTGGAAATAAGAAAGAACC+GGG | - | chr3_3:82640708-82640727 | None:intergenic | 30.0% | |
| GTTTGGAAATAAGAAAGAAC+CGG | - | chr3_3:82640709-82640728 | None:intergenic | 30.0% | |
| ATATATAACAAGGAAACGGA+AGG | - | chr3_3:82640839-82640858 | None:intergenic | 30.0% | |
| ! | ATTCGGGGTATTATAAGAAA+GGG | - | chr3_3:82640990-82641009 | None:intergenic | 30.0% |
| TTCTCTTTGCAATAAATCAC+TGG | + | chr3_3:82641034-82641053 | Msa0478190:intron | 30.0% | |
| TCTCTTTGCAATAAATCACT+GGG | + | chr3_3:82641035-82641054 | Msa0478190:intron | 30.0% | |
| !!! | AACCGAGGAACATAATTTTT+TGG | + | chr3_3:82641131-82641150 | Msa0478190:intron | 30.0% |
| TGCCAAAAAATTATGTTCCT+CGG | - | chr3_3:82641136-82641155 | None:intergenic | 30.0% | |
| GGCAAATGCAAATATTGAAA+AGG | + | chr3_3:82641152-82641171 | Msa0478190:intron | 30.0% | |
| CAAATATTGAAAAGGAACAG+TGG | + | chr3_3:82641160-82641179 | Msa0478190:intron | 30.0% | |
| ACTACATTAGTGCAATATGT+TGG | + | chr3_3:82641192-82641211 | Msa0478190:intron | 30.0% | |
| !! | CAATATGTTGGTTTCCAAAA+AGG | + | chr3_3:82641204-82641223 | Msa0478190:intron | 30.0% |
| ! | TTCTTGGCATCTTTTTAACA+TGG | + | chr3_3:82641368-82641387 | Msa0478190:intron | 30.0% |
| ! | TCTTGGCATCTTTTTAACAT+GGG | + | chr3_3:82641369-82641388 | Msa0478190:intron | 30.0% |
| ! | TAAGCATTCTGAGCATATTT+TGG | + | chr3_3:82641395-82641414 | Msa0478190:intron | 30.0% |
| !!! | GCATATTTTGGTTATCATAC+AGG | + | chr3_3:82641407-82641426 | Msa0478190:intron | 30.0% |
| TTATCATACAGGAAGTTAGA+CGG | + | chr3_3:82641418-82641437 | Msa0478190:intron | 30.0% | |
| ! | TAACCTTGTCATTTGAGTTA+CGG | + | chr3_3:82641540-82641559 | Msa0478190:intron | 30.0% |
| ! | CGTTTTTCTTCTGTTTGATT+AGG | + | chr3_3:82641608-82641627 | Msa0478190:intron | 30.0% |
| !! | ATTGGTGTTGTAAAGCTAAT+GGG | + | chr3_3:82641726-82641745 | Msa0478190:CDS | 30.0% |
| !! | TACTTCAAGATGTTGGTTTA+TGG | + | chr3_3:82642152-82642171 | Msa0478190:CDS | 30.0% |
| ATGGATATCTCATAAGATCA+AGG | + | chr3_3:82642171-82642190 | Msa0478190:CDS | 30.0% | |
| TTAACTAGTTAACCTGTAGT+TGG | - | chr3_3:82642343-82642362 | None:intergenic | 30.0% | |
| !!! | GGATTAGTTTTTTTAGCAGA+TGG | + | chr3_3:82642398-82642417 | Msa0478190:intron | 30.0% |
| !! | AACATTCAACTTGCTGAAAT+AGG | + | chr3_3:82642704-82642723 | Msa0478190:intron | 30.0% |
| ! | GAAATAGGATCATTTTGCAA+AGG | + | chr3_3:82642719-82642738 | Msa0478190:intron | 30.0% |
| ! | TTTTGCAAAGGAGAATAAGA+TGG | + | chr3_3:82642731-82642750 | Msa0478190:CDS | 30.0% |
| TATGGCTAGATTTCTTAACT+GGG | + | chr3_3:82642834-82642853 | Msa0478190:intron | 30.0% | |
| ATCTAGTAACTTACGTTGAA+TGG | - | chr3_3:82643017-82643036 | None:intergenic | 30.0% | |
| TGCACAATAACAAATGCTTA+AGG | + | chr3_3:82643227-82643246 | Msa0478190:intron | 30.0% | |
| ! | AACTCCACCAAATACAATTT+TGG | - | chr3_3:82643658-82643677 | None:intergenic | 30.0% |
| CTAAAACTCTTGTAGAGATA+AGG | - | chr3_3:82643966-82643985 | None:intergenic | 30.0% | |
| AAAGAAGAAAGGAAAGAGAG+TGG | - | chr3_3:82637953-82637972 | None:intergenic | 35.0% | |
| ACATGAATGGTTGTGATTTG+CGG | - | chr3_3:82638645-82638664 | None:intergenic | 35.0% | |
| ACTTTATTGTCCCTTTCCAT+AGG | + | chr3_3:82638938-82638957 | Msa0478190:intron | 35.0% | |
| TGAACAACAACCTATGGAAA+GGG | - | chr3_3:82638951-82638970 | None:intergenic | 35.0% | |
| TCTTTGTGAACAACAACCTA+TGG | - | chr3_3:82638957-82638976 | None:intergenic | 35.0% | |
| ! | TAGGTTGTTGTTCACAAAGA+TGG | + | chr3_3:82638957-82638976 | Msa0478190:intron | 35.0% |
| ATTGCTTGTATTGTCACATG+TGG | + | chr3_3:82639139-82639158 | Msa0478190:CDS | 35.0% | |
| TGTGGTCTTTCTTACATGTA+CGG | + | chr3_3:82639205-82639224 | Msa0478190:CDS | 35.0% | |
| ATGCCTTTCACAAATGGAAA+AGG | - | chr3_3:82639455-82639474 | None:intergenic | 35.0% | |
| GAGTGAACTAAACAAACCTT+TGG | + | chr3_3:82639549-82639568 | Msa0478190:intron | 35.0% | |
| CGATGTGACAAAAAGTAAAG+TGG | - | chr3_3:82639598-82639617 | None:intergenic | 35.0% | |
| AGTAGGTTATTGTCATGACA+TGG | + | chr3_3:82639950-82639969 | Msa0478190:intron | 35.0% | |
| ! | TGACATGGATTTTCACTGTT+TGG | + | chr3_3:82639965-82639984 | Msa0478190:intron | 35.0% |
| ! | GACATGGATTTTCACTGTTT+GGG | + | chr3_3:82639966-82639985 | Msa0478190:intron | 35.0% |
| ! | GTTCAGGTTTATATCATTGG+AGG | + | chr3_3:82639995-82640014 | Msa0478190:intron | 35.0% |
| GTTTATATCATTGGAGGAGA+TGG | + | chr3_3:82640001-82640020 | Msa0478190:CDS | 35.0% | |
| CCTTACTGGAATCCAAATAA+AGG | - | chr3_3:82640093-82640112 | None:intergenic | 35.0% | |
| ! | CCTTTATTTGGATTCCAGTA+AGG | + | chr3_3:82640090-82640109 | Msa0478190:intron | 35.0% |
| ! | TGCAAATGATGATAGTGTAG+TGG | + | chr3_3:82640574-82640593 | Msa0478190:intron | 35.0% |
| GTTAGTTAACCAATGTCTTC+TGG | + | chr3_3:82640602-82640621 | Msa0478190:intron | 35.0% | |
| AAACAGTTTCCAGAAGACAT+TGG | - | chr3_3:82640614-82640633 | None:intergenic | 35.0% | |
| TTGGAAATAAGAAAGAACCG+GGG | - | chr3_3:82640707-82640726 | None:intergenic | 35.0% | |
| ! | ATGATTTTCACTTGAAGGCA+TGG | - | chr3_3:82640788-82640807 | None:intergenic | 35.0% |
| ! | GATTCGGGGTATTATAAGAA+AGG | - | chr3_3:82640991-82641010 | None:intergenic | 35.0% |
| CTCTTTGCAATAAATCACTG+GGG | + | chr3_3:82641036-82641055 | Msa0478190:intron | 35.0% | |
| TCTTTGCAATAAATCACTGG+GGG | + | chr3_3:82641037-82641056 | Msa0478190:intron | 35.0% | |
| TTGAATATTACAAGGAACGG+AGG | + | chr3_3:82641098-82641117 | Msa0478190:intron | 35.0% | |
| GGAGGAATTAAAAATAACCG+AGG | + | chr3_3:82641116-82641135 | Msa0478190:intron | 35.0% | |
| !! | TATGTTGGTTTCCAAAAAGG+TGG | + | chr3_3:82641207-82641226 | Msa0478190:intron | 35.0% |
| ! | TTCCAAAAAGGTGGTTTGTA+TGG | + | chr3_3:82641216-82641235 | Msa0478190:intron | 35.0% |
| ! | AACCATACAAACCACCTTTT+TGG | - | chr3_3:82641221-82641240 | None:intergenic | 35.0% |
| ! | AAAAGGTGGTTTGTATGGTT+CGG | + | chr3_3:82641221-82641240 | Msa0478190:intron | 35.0% |
| ! | TAGGTCAAGCTTTATGTTCA+AGG | + | chr3_3:82641264-82641283 | Msa0478190:intron | 35.0% |
| TTTATGTTCAAGGAACAGCT+GGG | + | chr3_3:82641274-82641293 | Msa0478190:intron | 35.0% | |
| !! | GATTGACTTGTTATCGTTCT+TGG | + | chr3_3:82641352-82641371 | Msa0478190:intron | 35.0% |
| AACCATAGATAATGACATCC+CGG | + | chr3_3:82641476-82641495 | Msa0478190:CDS | 35.0% | |
| AAATGACAAGGTTAGAGTTC+TGG | - | chr3_3:82641534-82641553 | None:intergenic | 35.0% | |
| TAACCGTAACTCAAATGACA+AGG | - | chr3_3:82641546-82641565 | None:intergenic | 35.0% | |
| TGTTTGATTAGGTTATCGAC+AGG | + | chr3_3:82641619-82641638 | Msa0478190:intron | 35.0% | |
| TTCAACATGTGCTGCATTAA+TGG | - | chr3_3:82641685-82641704 | None:intergenic | 35.0% | |
| !! | CATTGGTGTTGTAAAGCTAA+TGG | + | chr3_3:82641725-82641744 | Msa0478190:CDS | 35.0% |
| TAGGGTTCAATTAAACTCAG+AGG | - | chr3_3:82641807-82641826 | None:intergenic | 35.0% | |
| !! | GTAATGGATTCTATAACTGC+AGG | + | chr3_3:82641905-82641924 | Msa0478190:intron | 35.0% |
| TATGGTCATAGTTATAGCTG+AGG | + | chr3_3:82642060-82642079 | Msa0478190:CDS | 35.0% | |
| ATGGTCATAGTTATAGCTGA+GGG | + | chr3_3:82642061-82642080 | Msa0478190:CDS | 35.0% | |
| AACAAGCTACTTCAAGATGT+TGG | + | chr3_3:82642145-82642164 | Msa0478190:CDS | 35.0% | |
| GTTGTTTGTGTATATCTACG+AGG | + | chr3_3:82642290-82642309 | Msa0478190:intron | 35.0% | |
| TACGAGGAATTAAGAACTCA+AGG | + | chr3_3:82642306-82642325 | Msa0478190:intron | 35.0% | |
| GATTCATTGATACCCCTATT+TGG | + | chr3_3:82642377-82642396 | Msa0478190:intron | 35.0% | |
| CGAATAGATCAAAATGGAAG+AGG | - | chr3_3:82642798-82642817 | None:intergenic | 35.0% | |
| CGTTGTATCTTAGACTACTA+TGG | + | chr3_3:82642816-82642835 | Msa0478190:intron | 35.0% | |
| CTATGGCTAGATTTCTTAAC+TGG | + | chr3_3:82642833-82642852 | Msa0478190:intron | 35.0% | |
| TCAGATTATAAAACTGTGCG+AGG | - | chr3_3:82643042-82643061 | None:intergenic | 35.0% | |
| ATATGCTACTGTTGTTGAGA+TGG | + | chr3_3:82643151-82643170 | Msa0478190:intron | 35.0% | |
| TTGTGATTACTGACAGAATG+TGG | + | chr3_3:82643374-82643393 | Msa0478190:CDS | 35.0% | |
| TGTGATTACTGACAGAATGT+GGG | + | chr3_3:82643375-82643394 | Msa0478190:CDS | 35.0% | |
| ! | TCTTTGGGTTTCAAAAAGCT+TGG | - | chr3_3:82643427-82643446 | None:intergenic | 35.0% |
| ! | GAAGTTTTGCTGGAATGATT+AGG | + | chr3_3:82643692-82643711 | Msa0478190:three_prime_UTR | 35.0% |
| GGTGTGTCTAATTAAAGTAC+TGG | + | chr3_3:82643735-82643754 | Msa0478190:three_prime_UTR | 35.0% | |
| CTTACTCAGCTGATTAAGTT+TGG | + | chr3_3:82643859-82643878 | Msa0478190:three_prime_UTR | 35.0% | |
| ! | AGGAAGATTTGGAACGTAGT+CGG | - | chr3_3:82638162-82638181 | None:intergenic | 40.0% |
| ! | GGATTAGATCGAAGTGGATT+AGG | - | chr3_3:82638275-82638294 | None:intergenic | 40.0% |
| ! | TAAGCTGGATTAGATCGAAG+TGG | - | chr3_3:82638281-82638300 | None:intergenic | 40.0% |
| TCGATCTAATCCAGCTTACT+CGG | + | chr3_3:82638283-82638302 | Msa0478190:CDS | 40.0% | |
| TACTTAACAACCGAGTAAGC+TGG | - | chr3_3:82638296-82638315 | None:intergenic | 40.0% | |
| ATGCATAGTAAACACGATCG+AGG | - | chr3_3:82638521-82638540 | None:intergenic | 40.0% | |
| GTGAACAACAACCTATGGAA+AGG | - | chr3_3:82638952-82638971 | None:intergenic | 40.0% | |
| GTCGAAAATGAACACCTCTT+GGG | - | chr3_3:82638983-82639002 | None:intergenic | 40.0% | |
| ! | AGCGAAATAACCTTTTGTCG+AGG | - | chr3_3:82639014-82639033 | None:intergenic | 40.0% |
| TTTCCCTTATGACAGTGTTG+AGG | - | chr3_3:82639180-82639199 | None:intergenic | 40.0% | |
| GTCATAAGGGAAATTGTGTG+TGG | + | chr3_3:82639187-82639206 | Msa0478190:CDS | 40.0% | |
| GTGAAGTACATCTTTGTCTC+TGG | + | chr3_3:82639359-82639378 | Msa0478190:intron | 40.0% | |
| TTTGCACAAGTTTGGAAACC+TGG | + | chr3_3:82639422-82639441 | Msa0478190:intron | 40.0% | |
| AATGGAAAAGGATATGGTCC+AGG | - | chr3_3:82639443-82639462 | None:intergenic | 40.0% | |
| TTGGTCATGCCTTTCACAAA+TGG | - | chr3_3:82639461-82639480 | None:intergenic | 40.0% | |
| ! | TTGTGAAAGGCATGACCAAA+TGG | + | chr3_3:82639462-82639481 | Msa0478190:intron | 40.0% |
| AGTGACTTCACGAAAACCAA+AGG | - | chr3_3:82639568-82639587 | None:intergenic | 40.0% | |
| TTTACACAGGGTGGTTATAG+AGG | + | chr3_3:82639678-82639697 | Msa0478190:intron | 40.0% | |
| TGGATGTCATTGACCACTTT+AGG | - | chr3_3:82639735-82639754 | None:intergenic | 40.0% | |
| !! | ACTGTTTGGGTTATTGGTTC+AGG | + | chr3_3:82639979-82639998 | Msa0478190:intron | 40.0% |
| CTGCTGTGATTTATGAGGTA+TGG | + | chr3_3:82640038-82640057 | Msa0478190:intron | 40.0% | |
| TATGAGGTATGGTGATTCAG+AGG | + | chr3_3:82640049-82640068 | Msa0478190:intron | 40.0% | |
| TATCAGTGCTATCTCTGTGA+GGG | - | chr3_3:82640349-82640368 | None:intergenic | 40.0% | |
| TTATCAGTGCTATCTCTGTG+AGG | - | chr3_3:82640350-82640369 | None:intergenic | 40.0% | |
| GTTGGTTGACTAATGTCTTC+TGG | + | chr3_3:82640457-82640476 | Msa0478190:intron | 40.0% | |
| !! | GACTAATGTCTTCTGGAATG+TGG | + | chr3_3:82640464-82640483 | Msa0478190:intron | 40.0% |
| AGAAAAAACAAGGGAAGGGT+GGG | - | chr3_3:82640541-82640560 | None:intergenic | 40.0% | |
| AAGAAAAAACAAGGGAAGGG+TGG | - | chr3_3:82640542-82640561 | None:intergenic | 40.0% | |
| TGGAAATAAGAAAGAACCGG+GGG | - | chr3_3:82640706-82640725 | None:intergenic | 40.0% | |
| CATAAAGCTTGACCTATCAG+AGG | - | chr3_3:82641260-82641279 | None:intergenic | 40.0% | |
| CTTTATGTTCAAGGAACAGC+TGG | + | chr3_3:82641273-82641292 | Msa0478190:intron | 40.0% | |
| TACCGGGATGTCATTATCTA+TGG | - | chr3_3:82641481-82641500 | None:intergenic | 40.0% | |
| ACATAGAGATTGAGCATACC+GGG | - | chr3_3:82641497-82641516 | None:intergenic | 40.0% | |
| GACATAGAGATTGAGCATAC+CGG | - | chr3_3:82641498-82641517 | None:intergenic | 40.0% | |
| TACGGTTACATCTGATGAGT+CGG | + | chr3_3:82641558-82641577 | Msa0478190:intron | 40.0% | |
| AACTGCGGTATCAAAACCAA+AGG | - | chr3_3:82641646-82641665 | None:intergenic | 40.0% | |
| !! | GAAGCTGAAAGTGTTGAGAA+TGG | + | chr3_3:82641702-82641721 | Msa0478190:CDS | 40.0% |
| !! | GAAAGTGTTGAGAATGGCAT+TGG | + | chr3_3:82641708-82641727 | Msa0478190:CDS | 40.0% |
| ! | AAGCTAATGGGTCGTTATAG+TGG | + | chr3_3:82641738-82641757 | Msa0478190:CDS | 40.0% |
| TACTCTTGCTAGTAGAGATG+TGG | + | chr3_3:82641946-82641965 | Msa0478190:CDS | 40.0% | |
| ACGAAAAGGCTGAAAGAAAG+TGG | + | chr3_3:82642034-82642053 | Msa0478190:CDS | 40.0% | |
| GCTGAAAGAAAGTGGACATA+TGG | + | chr3_3:82642042-82642061 | Msa0478190:CDS | 40.0% | |
| ! | TACAGAAAGCATGCAAGACA+TGG | + | chr3_3:82642102-82642121 | Msa0478190:CDS | 40.0% |
| GAGGAATTAAGAACTCAAGG+AGG | + | chr3_3:82642309-82642328 | Msa0478190:intron | 40.0% | |
| ! | GTATCTTCTGAAAGTGGAGA+AGG | - | chr3_3:82642530-82642549 | None:intergenic | 40.0% |
| CAGATCCAACTTACATGATC+CGG | + | chr3_3:82642865-82642884 | Msa0478190:intron | 40.0% | |
| AGATCCAACTTACATGATCC+GGG | + | chr3_3:82642866-82642885 | Msa0478190:intron | 40.0% | |
| CACAACGTTGTTCATCTTCT+CGG | - | chr3_3:82643359-82643378 | None:intergenic | 40.0% | |
| TTAGAAGGGAGCAATTGCAA+TGG | + | chr3_3:82643490-82643509 | Msa0478190:CDS | 40.0% | |
| !! | ATTCCCACTCAGTTGATAGA+AGG | + | chr3_3:82643544-82643563 | Msa0478190:CDS | 40.0% |
| !! | TTCCCACTCAGTTGATAGAA+GGG | + | chr3_3:82643545-82643564 | Msa0478190:CDS | 40.0% |
| ! | GTGACATGATGAAGTTTTGC+TGG | + | chr3_3:82643682-82643701 | Msa0478190:three_prime_UTR | 40.0% |
| GTAAGAGACTACTTGTGTGA+AGG | - | chr3_3:82643844-82643863 | None:intergenic | 40.0% | |
| AGCTGATTAAGTTTGGCACA+AGG | + | chr3_3:82643866-82643885 | Msa0478190:three_prime_UTR | 40.0% | |
| TAGAGTGAAGAAATGGCGTC+AGG | + | chr3_3:82638065-82638084 | Msa0478190:exon | 45.0% | |
| TCACAGATGAAGATCGTCCA+TGG | + | chr3_3:82638098-82638117 | Msa0478190:CDS | 45.0% | |
| CAGGCAGTACTTTGTGCATA+TGG | + | chr3_3:82638414-82638433 | Msa0478190:intron | 45.0% | |
| CGTCGAAAATGAACACCTCT+TGG | - | chr3_3:82638984-82639003 | None:intergenic | 45.0% | |
| GCTTGTATTGTCACATGTGG+TGG | + | chr3_3:82639142-82639161 | Msa0478190:CDS | 45.0% | |
| ! | TTATGACAGTGTTGAGGCCA+GGG | - | chr3_3:82639174-82639193 | None:intergenic | 45.0% |
| TGGCCTCAACACTGTCATAA+GGG | + | chr3_3:82639174-82639193 | Msa0478190:CDS | 45.0% | |
| GTCAATGACATCCATAAGCG+TGG | + | chr3_3:82639741-82639760 | Msa0478190:CDS | 45.0% | |
| AATGACATCCATAAGCGTGG+AGG | + | chr3_3:82639744-82639763 | Msa0478190:CDS | 45.0% | |
| CAAGATAGTTGACAGCATCC+AGG | + | chr3_3:82639806-82639825 | Msa0478190:CDS | 45.0% | |
| TAGTTGACAGCATCCAGGAT+CGG | + | chr3_3:82639811-82639830 | Msa0478190:CDS | 45.0% | |
| AGGAGCTGCTGTGATTTATG+AGG | + | chr3_3:82640033-82640052 | Msa0478190:CDS | 45.0% | |
| AAAAAACAAGGGAAGGGTGG+GGG | - | chr3_3:82640539-82640558 | None:intergenic | 45.0% | |
| GAAAAAACAAGGGAAGGGTG+GGG | - | chr3_3:82640540-82640559 | None:intergenic | 45.0% | |
| AAATAAGAAAGAACCGGGGG+GGG | - | chr3_3:82640703-82640722 | None:intergenic | 45.0% | |
| GAAATAAGAAAGAACCGGGG+GGG | - | chr3_3:82640704-82640723 | None:intergenic | 45.0% | |
| GGAAATAAGAAAGAACCGGG+GGG | - | chr3_3:82640705-82640724 | None:intergenic | 45.0% | |
| CTATCATCGCTTGCACTGTT+TGG | - | chr3_3:82640726-82640745 | None:intergenic | 45.0% | |
| ACTACCTCAGTACCTCTGAT+AGG | + | chr3_3:82641245-82641264 | Msa0478190:intron | 45.0% | |
| !! | TTGACCTATCAGAGGTACTG+AGG | - | chr3_3:82641252-82641271 | None:intergenic | 45.0% |
| GGTCTGAAAGTAGCAATTGC+TGG | + | chr3_3:82641444-82641463 | Msa0478190:CDS | 45.0% | |
| TAGGTTATCGACAGGTCCTT+TGG | + | chr3_3:82641627-82641646 | Msa0478190:intron | 45.0% | |
| !!! | TGGTTTTGATACCGCAGTTG+AGG | + | chr3_3:82641647-82641666 | Msa0478190:CDS | 45.0% |
| ! | TTTTGATACCGCAGTTGAGG+AGG | + | chr3_3:82641650-82641669 | Msa0478190:CDS | 45.0% |
| ACGTTTGGATGGAGGAAGTA+GGG | - | chr3_3:82641825-82641844 | None:intergenic | 45.0% | |
| TACGTTTGGATGGAGGAAGT+AGG | - | chr3_3:82641826-82641845 | None:intergenic | 45.0% | |
| AGTCACCCTTCTACCTTGAA+GGG | + | chr3_3:82641987-82642006 | Msa0478190:CDS | 45.0% | |
| ATAGTTATAGCTGAGGGAGC+AGG | + | chr3_3:82642067-82642086 | Msa0478190:CDS | 45.0% | |
| !! | TGTTTCCAGAAGCATCCTTC+TGG | - | chr3_3:82642129-82642148 | None:intergenic | 45.0% |
| ! | CGGATCATGTAAGTTGGATC+TGG | - | chr3_3:82642867-82642886 | None:intergenic | 45.0% |
| ATTGCCCGGATCATGTAAGT+TGG | - | chr3_3:82642873-82642892 | None:intergenic | 45.0% | |
| ATGCATTGCTTGGAATTGCC+CGG | - | chr3_3:82642887-82642906 | None:intergenic | 45.0% | |
| ACACTGTCTGATGCATTGCT+TGG | - | chr3_3:82642897-82642916 | None:intergenic | 45.0% | |
| TTCACTGCTGGACTTGTGAA+TGG | + | chr3_3:82642975-82642994 | Msa0478190:CDS | 45.0% | |
| CATCTTCTCGGTGATTCTCT+GGG | - | chr3_3:82643347-82643366 | None:intergenic | 45.0% | |
| TCATCTTCTCGGTGATTCTC+TGG | - | chr3_3:82643348-82643367 | None:intergenic | 45.0% | |
| TGGGTTTCAAAAAGCTTGGC+TGG | - | chr3_3:82643423-82643442 | None:intergenic | 45.0% | |
| TCCCTGACTCAGTTGTTAGA+AGG | + | chr3_3:82643475-82643494 | Msa0478190:CDS | 45.0% | |
| CCCTTCTAACAACTGAGTCA+GGG | - | chr3_3:82643479-82643498 | None:intergenic | 45.0% | |
| CCCTGACTCAGTTGTTAGAA+GGG | + | chr3_3:82643476-82643495 | Msa0478190:CDS | 45.0% | |
| TCCCTTCTAACAACTGAGTC+AGG | - | chr3_3:82643480-82643499 | None:intergenic | 45.0% | |
| !! | TCCCACTCAGTTGATAGAAG+GGG | + | chr3_3:82643546-82643565 | Msa0478190:CDS | 45.0% |
| TCCCCTTCTATCAACTGAGT+GGG | - | chr3_3:82643550-82643569 | None:intergenic | 45.0% | |
| GTATGTAACCAGCATCGCCA+TGG | - | chr3_3:82638118-82638137 | None:intergenic | 50.0% | |
| ! | TGGCGATGCTGGTTACATAC+TGG | + | chr3_3:82638118-82638137 | Msa0478190:CDS | 50.0% |
| GGATGACACCGTTCCTCAAA+AGG | + | chr3_3:82638435-82638454 | Msa0478190:CDS | 50.0% | |
| GTTCACAAAGATGGCCCAAG+AGG | + | chr3_3:82638966-82638985 | Msa0478190:CDS | 50.0% | |
| ! | GGTGTTCATTTTCGACGTGC+AGG | + | chr3_3:82638987-82639006 | Msa0478190:CDS | 50.0% |
| ! | CTTATGACAGTGTTGAGGCC+AGG | - | chr3_3:82639175-82639194 | None:intergenic | 50.0% |
| CTGGCCTCAACACTGTCATA+AGG | + | chr3_3:82639173-82639192 | Msa0478190:CDS | 50.0% | |
| !! | TACGGTGTCGACAAAGTCCT+TGG | + | chr3_3:82639223-82639242 | Msa0478190:CDS | 50.0% |
| GTCCTTGGCATAGATGTGAG+TGG | + | chr3_3:82639238-82639257 | Msa0478190:intron | 50.0% | |
| AGCCACTCACATCTATGCCA+AGG | - | chr3_3:82639243-82639262 | None:intergenic | 50.0% | |
| TGCACAGTCTGATGTGTGCT+AGG | + | chr3_3:82639317-82639336 | Msa0478190:intron | 50.0% | |
| CAGTCTGATGTGTGCTAGGA+AGG | + | chr3_3:82639321-82639340 | Msa0478190:intron | 50.0% | |
| GCGTGCTCTTTGCACAAGTT+TGG | + | chr3_3:82639414-82639433 | Msa0478190:intron | 50.0% | |
| GAATCGTTCCTCCACGCTTA+TGG | - | chr3_3:82639755-82639774 | None:intergenic | 50.0% | |
| AAGCGTGGAGGAACGATTCT+TGG | + | chr3_3:82639756-82639775 | Msa0478190:CDS | 50.0% | |
| AGCGTGGAGGAACGATTCTT+GGG | + | chr3_3:82639757-82639776 | Msa0478190:CDS | 50.0% | |
| AGTTGACAGCATCCAGGATC+GGG | + | chr3_3:82639812-82639831 | Msa0478190:CDS | 50.0% | |
| CCTGATTAATTCCCCGATCC+TGG | - | chr3_3:82639827-82639846 | None:intergenic | 50.0% | |
| CCAGGATCGGGGAATTAATC+AGG | + | chr3_3:82639824-82639843 | Msa0478190:CDS | 50.0% | |
| AATAAGAAAGAACCGGGGGG+GGG | - | chr3_3:82640702-82640721 | None:intergenic | 50.0% | |
| ATACAGGAAGTTAGACGGCG+AGG | + | chr3_3:82641423-82641442 | Msa0478190:intron | 50.0% | |
| TCAAGGTAGAAGGGTGACTC+TGG | - | chr3_3:82641986-82642005 | None:intergenic | 50.0% | |
| GAGTCACCCTTCTACCTTGA+AGG | + | chr3_3:82641986-82642005 | Msa0478190:CDS | 50.0% | |
| ACCCTTCTACCTTGAAGGGA+AGG | + | chr3_3:82641991-82642010 | Msa0478190:CDS | 50.0% | |
| CCCTTCCCTTCAAGGTAGAA+GGG | - | chr3_3:82641995-82642014 | None:intergenic | 50.0% | |
| CCCTTCTACCTTGAAGGGAA+GGG | + | chr3_3:82641992-82642011 | Msa0478190:CDS | 50.0% | |
| ACCCTTCCCTTCAAGGTAGA+AGG | - | chr3_3:82641996-82642015 | None:intergenic | 50.0% | |
| TTCTACCTTGAAGGGAAGGG+TGG | + | chr3_3:82641995-82642014 | Msa0478190:CDS | 50.0% | |
| AAAGTCCACCCTTCCCTTCA+AGG | - | chr3_3:82642003-82642022 | None:intergenic | 50.0% | |
| CATGCAAGACATGGACCAGA+AGG | + | chr3_3:82642111-82642130 | Msa0478190:CDS | 50.0% | |
| ATGGACCAGAAGGATGCTTC+TGG | + | chr3_3:82642121-82642140 | Msa0478190:CDS | 50.0% | |
| GTGCATTGAGTGGTATGCAG+AGG | - | chr3_3:82642559-82642578 | None:intergenic | 50.0% | |
| CTTGCTCAGAGTGCAGTTCA+TGG | + | chr3_3:82642930-82642949 | Msa0478190:CDS | 50.0% | |
| GAGTGCAGTTCATGGTGCAA+TGG | + | chr3_3:82642938-82642957 | Msa0478190:CDS | 50.0% | |
| CAGTTCATGGTGCAATGGCT+GGG | + | chr3_3:82642943-82642962 | Msa0478190:CDS | 50.0% | |
| GGGTATACTGGATTCACTGC+TGG | + | chr3_3:82642963-82642982 | Msa0478190:CDS | 50.0% | |
| GAAGGGAGCAATTGCAATGG+TGG | + | chr3_3:82643493-82643512 | Msa0478190:CDS | 50.0% | |
| CAATTGCAATGGTGGCAGTG+AGG | + | chr3_3:82643501-82643520 | Msa0478190:CDS | 50.0% | |
| GTCCCCTTCTATCAACTGAG+TGG | - | chr3_3:82643551-82643570 | None:intergenic | 50.0% | |
| AAGATCGTCCATGGCGATGC+TGG | + | chr3_3:82638107-82638126 | Msa0478190:CDS | 55.0% | |
| GGAACGTAGTCGGAGAGATG+AGG | - | chr3_3:82638152-82638171 | None:intergenic | 55.0% | |
| ACGTGCAGGACCTCGACAAA+AGG | + | chr3_3:82639001-82639020 | Msa0478190:CDS | 55.0% | |
| ACGATTCTTGGGACATCCCG+AGG | + | chr3_3:82639768-82639787 | Msa0478190:CDS | 55.0% | |
| CGATTCTTGGGACATCCCGA+GGG | + | chr3_3:82639769-82639788 | Msa0478190:CDS | 55.0% | |
| GATTCTTGGGACATCCCGAG+GGG | + | chr3_3:82639770-82639789 | Msa0478190:CDS | 55.0% | |
| ATTCTTGGGACATCCCGAGG+GGG | + | chr3_3:82639771-82639790 | Msa0478190:CDS | 55.0% | |
| GTTGACAGCATCCAGGATCG+GGG | + | chr3_3:82639813-82639832 | Msa0478190:CDS | 55.0% | |
| ATAAGAAAGAACCGGGGGGG+GGG | - | chr3_3:82640701-82640720 | None:intergenic | 55.0% | |
| ACGTTGAGCCTCCTCAACTG+CGG | - | chr3_3:82641661-82641680 | None:intergenic | 55.0% | |
| GAGGAGCTCTCACCAACTAC+AGG | + | chr3_3:82642328-82642347 | Msa0478190:intron | 55.0% | |
| GCAGTTCATGGTGCAATGGC+TGG | + | chr3_3:82642942-82642961 | Msa0478190:CDS | 55.0% | |
| GGTGCAATGGCTGGGTATAC+TGG | + | chr3_3:82642951-82642970 | Msa0478190:CDS | 55.0% | |
| TGGCAGTGAGGATGCGAAGA+AGG | + | chr3_3:82643513-82643532 | Msa0478190:CDS | 55.0% | |
| TGCAACTGTCACTGTCAGCG+AGG | - | chr3_3:82643603-82643622 | None:intergenic | 55.0% | |
| ATCTGCCGACGTGTCTGGGT+GGG | - | chr3_3:82637874-82637893 | None:intergenic | 60.0% | |
| ACATGTGGTGGTCTCTGCCC+TGG | + | chr3_3:82639154-82639173 | Msa0478190:CDS | 60.0% | |
| TTCTTGGGACATCCCGAGGG+GGG | + | chr3_3:82639772-82639791 | Msa0478190:CDS | 60.0% | |
| TGCCAGTATCATGCCCCCCT+CGG | - | chr3_3:82639788-82639807 | None:intergenic | 60.0% | |
| GGAGGAGATGGAACACAGCG+AGG | + | chr3_3:82640013-82640032 | Msa0478190:CDS | 60.0% | |
| TAAGAAAGAACCGGGGGGGG+GGG | - | chr3_3:82640700-82640719 | None:intergenic | 60.0% | |
| GGGTCTGGACCGTTCGTGTG+TGG | - | chr3_3:82637854-82637873 | None:intergenic | 65.0% | |
| CCAGACCCACCCAGACACGT+CGG | + | chr3_3:82637866-82637885 | Msa0478190:five_prime_UTR | 65.0% | |
| GATCTGCCGACGTGTCTGGG+TGG | - | chr3_3:82637875-82637894 | None:intergenic | 65.0% | |
| GGCGATCTGCCGACGTGTCT+GGG | - | chr3_3:82637878-82637897 | None:intergenic | 65.0% | |
| ! | TCCCGAGGGGGGCATGATAC+TGG | + | chr3_3:82639783-82639802 | Msa0478190:CDS | 65.0% |
| GCCAGTATCATGCCCCCCTC+GGG | - | chr3_3:82639787-82639806 | None:intergenic | 65.0% | |
| AAGAAAGAACCGGGGGGGGG+GGG | - | chr3_3:82640699-82640718 | None:intergenic | 65.0% | |
| CCGACGTGTCTGGGTGGGTC+TGG | - | chr3_3:82637869-82637888 | None:intergenic | 70.0% | |
| CGGCGATCTGCCGACGTGTC+TGG | - | chr3_3:82637879-82637898 | None:intergenic | 70.0% | |
| AGAAAGAACCGGGGGGGGGG+GGG | - | chr3_3:82640698-82640717 | None:intergenic | 70.0% | |
| AAAGAACCGGGGGGGGGGGG+GGG | - | chr3_3:82640696-82640715 | None:intergenic | 75.0% | |
| GAAAGAACCGGGGGGGGGGG+GGG | - | chr3_3:82640697-82640716 | None:intergenic | 75.0% | |
| ! | AAGAACCGGGGGGGGGGGGG+GGG | - | chr3_3:82640695-82640714 | None:intergenic | 80.0% |
| ! | AGAACCGGGGGGGGGGGGGG+GGG | - | chr3_3:82640694-82640713 | None:intergenic | 85.0% |
| ! | AACCGGGGGGGGGGGGGGGG+GGG | - | chr3_3:82640692-82640711 | None:intergenic | 90.0% |
| ! | GAACCGGGGGGGGGGGGGGG+GGG | - | chr3_3:82640693-82640712 | None:intergenic | 90.0% |
| ! | TGCCCCCCCCCCCCCCCCCC+CGG | + | chr3_3:82640687-82640706 | Msa0478190:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 82637850 | 82644029 | 82637850 | ID=Msa0478190;Name=Msa0478190 |
| chr3_3 | mRNA | 82637850 | 82644029 | 82637850 | ID=Msa0478190-mRNA-1;Parent=Msa0478190;Name=Msa0478190-mRNA-1;_AED=0.09;_eAED=0.09;_QI=227|1|1|1|1|1|13|396|519 |
| chr3_3 | exon | 82637850 | 82638181 | 82637850 | ID=Msa0478190-mRNA-1:exon:23088;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82638266 | 82638312 | 82638266 | ID=Msa0478190-mRNA-1:exon:23089;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82638417 | 82638456 | 82638417 | ID=Msa0478190-mRNA-1:exon:23090;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82638960 | 82639022 | 82638960 | ID=Msa0478190-mRNA-1:exon:23091;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82639115 | 82639252 | 82639115 | ID=Msa0478190-mRNA-1:exon:23092;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82639687 | 82639845 | 82639687 | ID=Msa0478190-mRNA-1:exon:23093;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82640001 | 82640054 | 82640001 | ID=Msa0478190-mRNA-1:exon:23094;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82641429 | 82641497 | 82641429 | ID=Msa0478190-mRNA-1:exon:23095;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82641630 | 82641759 | 82641630 | ID=Msa0478190-mRNA-1:exon:23096;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82641927 | 82642192 | 82641927 | ID=Msa0478190-mRNA-1:exon:23097;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82642726 | 82642774 | 82642726 | ID=Msa0478190-mRNA-1:exon:23098;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82642868 | 82643022 | 82642868 | ID=Msa0478190-mRNA-1:exon:23099;Parent=Msa0478190-mRNA-1 |
| chr3_3 | exon | 82643349 | 82644029 | 82643349 | ID=Msa0478190-mRNA-1:exon:23100;Parent=Msa0478190-mRNA-1 |
| chr3_3 | five_prime_UTR | 82637850 | 82638076 | 82637850 | ID=Msa0478190-mRNA-1:five_prime_utr;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82638077 | 82638181 | 82638077 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82638266 | 82638312 | 82638266 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82638417 | 82638456 | 82638417 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82638960 | 82639022 | 82638960 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82639115 | 82639252 | 82639115 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82639687 | 82639845 | 82639687 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82640001 | 82640054 | 82640001 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82641429 | 82641497 | 82641429 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82641630 | 82641759 | 82641630 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82641927 | 82642192 | 82641927 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82642726 | 82642774 | 82642726 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82642868 | 82643022 | 82642868 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | CDS | 82643349 | 82643633 | 82643349 | ID=Msa0478190-mRNA-1:cds;Parent=Msa0478190-mRNA-1 |
| chr3_3 | three_prime_UTR | 82643634 | 82644029 | 82643634 | ID=Msa0478190-mRNA-1:three_prime_utr;Parent=Msa0478190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
