AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0473490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473490 MtrunA17_Chr3g0129351 96.096 333 13 0 1 333 1 333 0.0 660
Msa0473490 MtrunA17_Chr7g0263181 37.011 281 152 6 60 324 100 371 3.17e-51 174
Msa0473490 MtrunA17_Chr8g0375201 38.743 191 117 0 115 305 107 297 1.87e-41 146
Msa0473490 MtrunA17_Chr1g0182131 33.333 210 134 4 104 310 132 338 3.66e-26 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0473490 AT4G39470.1 54.513 277 120 2 62 333 66 341 1.04e-102 305
Msa0473490 AT3G18420.1 36.992 246 142 4 74 306 55 300 2.42e-42 149
Msa0473490 AT2G37400.1 39.896 193 115 1 123 314 129 321 1.05e-37 137
Msa0473490 AT3G53560.1 40.000 195 112 2 123 314 129 321 2.06e-37 137
Msa0473490 AT3G53560.2 39.320 206 119 3 112 314 167 369 3.95e-37 137
Msa0473490 AT5G02590.1 39.691 194 115 2 115 307 120 312 6.46e-37 135
Msa0473490 AT3G09490.1 35.814 215 130 3 92 303 84 293 1.49e-30 118

Find 89 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATTGTATTTGGAAATTT+TGG 0.111951 3_3:-76097601 Msa0473490:CDS
TGTTGATTCAGCTGAAATTT+TGG 0.183578 3_3:-76097820 Msa0473490:CDS
TAAGGCTAAAGGATTGTATT+TGG 0.219222 3_3:-76097610 Msa0473490:CDS
AACAAGTGCATAGTGATAAA+TGG 0.231649 3_3:+76097994 None:intergenic
GAGCTTTCTCCTATGGTGTT+TGG 0.260274 3_3:+76094956 None:intergenic
ATACAGTCTTCTAGATAAAA+AGG 0.263949 3_3:-76095886 Msa0473490:CDS
AGCTTTCTCCTATGGTGTTT+GGG 0.278495 3_3:+76094957 None:intergenic
AGAAGGGAATTGGGAAGATT+TGG 0.279074 3_3:+76098086 None:intergenic
AAGCAATCTGAATTGTGAAT+TGG 0.312107 3_3:-76094880 Msa0473490:three_prime_UTR
AAAATTGTGGAGGGTGTTAA+TGG 0.334111 3_3:+76097963 None:intergenic
TGGTTGTGTATGGGAAAATT+AGG 0.344777 3_3:-76097749 Msa0473490:CDS
GTGTGCTTTGCAGGGTGATT+TGG 0.355123 3_3:-76096178 Msa0473490:intron
CCCTTCTGTGGAAACTCTTC+AGG 0.358106 3_3:+76095822 None:intergenic
AGCCTCCACTCAACCTCATT+TGG 0.359412 3_3:+76097672 None:intergenic
TCGTGGCAAAAGAAGGGAAT+TGG 0.399875 3_3:+76098076 None:intergenic
AGGAAAGTGCACAGATCAAT+TGG 0.421291 3_3:+76095026 None:intergenic
ATTGTTGAAGTGAAATTGAT+AGG 0.431111 3_3:+76098033 None:intergenic
AATTCCTTCTGAAACTGTAC+TGG 0.436247 3_3:+76095759 None:intergenic
GAATTGGGATAGATATGTTA+TGG 0.437245 3_3:-76094864 Msa0473490:three_prime_UTR
AGCAATCTGAATTGTGAATT+GGG 0.443446 3_3:-76094879 Msa0473490:three_prime_UTR
TGATGACCAGATTGGTTACC+AGG 0.455806 3_3:+76094919 None:intergenic
TATTTACTTGATGACCAGAT+TGG 0.467712 3_3:+76094911 None:intergenic
ACAAGTGCATAGTGATAAAT+GGG 0.468344 3_3:+76097995 None:intergenic
GCTCTTAAAGTGGTTGTGTA+TGG 0.470707 3_3:-76097759 Msa0473490:CDS
TTGCAGGGTGATTTGGAGGA+GGG 0.472903 3_3:-76096171 Msa0473490:intron
TTACGGAGGAGAGAAATATA+AGG 0.473332 3_3:-76096340 Msa0473490:CDS
CCAAGCTGAGCTTTCTCCTA+TGG 0.478295 3_3:+76094949 None:intergenic
TACGAATTCGTGGCAAAAGA+AGG 0.481369 3_3:+76098069 None:intergenic
TTTGCAGGGTGATTTGGAGG+AGG 0.482427 3_3:-76096172 Msa0473490:intron
AGTGAACCTGGTAACCAATC+TGG 0.485601 3_3:-76094925 Msa0473490:three_prime_UTR
TGCACAAATGCGTGTTGTAC+AGG 0.487235 3_3:-76096309 Msa0473490:intron
TGCTTTGCAGGGTGATTTGG+AGG 0.487354 3_3:-76096175 Msa0473490:intron
AAAAGAGTGTAAAATCAATT+GGG 0.495076 3_3:+76094835 None:intergenic
GATATCACCTTAGCAGCAAA+AGG 0.497307 3_3:-76095789 Msa0473490:CDS
TTCAGCATTTCAAATACAGC+AGG 0.497693 3_3:+76096398 None:intergenic
GACAATGGGGTATTTGAGTA+AGG 0.500527 3_3:-76097628 Msa0473490:CDS
CTCTTAAAGTGGTTGTGTAT+GGG 0.502104 3_3:-76097758 Msa0473490:CDS
GATCCGCTGATGCGAGTCAA+GGG 0.502120 3_3:-76095062 Msa0473490:three_prime_UTR
CGTGGCAAAAGAAGGGAATT+GGG 0.502308 3_3:+76098077 None:intergenic
AAGCTGAGAAGTTTGTGAAG+AGG 0.509773 3_3:-76097710 Msa0473490:CDS
TTGTTGAAGTGAAATTGATA+GGG 0.520583 3_3:+76098034 None:intergenic
AATTGGGATAGATATGTTAT+GGG 0.523293 3_3:-76094863 Msa0473490:three_prime_UTR
GCTCAGCTTGGTAGTGAACC+TGG 0.526391 3_3:-76094937 Msa0473490:three_prime_UTR
GGATCCGCTGATGCGAGTCA+AGG 0.534583 3_3:-76095063 Msa0473490:three_prime_UTR
AAACTCACCTGGCAAAGATA+AGG 0.536373 3_3:+76096099 None:intergenic
GGGTATTTGAGTAAGGCTAA+AGG 0.536389 3_3:-76097621 Msa0473490:CDS
GCATTGTGTTATGAGACAAT+GGG 0.536548 3_3:-76097642 Msa0473490:CDS
AAACACAGTTGTTGTCAAAG+AGG 0.536808 3_3:-76094990 Msa0473490:three_prime_UTR
GCCTGAAGAGTTTCCACAGA+AGG 0.536929 3_3:-76095823 Msa0473490:CDS
AAATGTTGAGGCTCTTAAAG+TGG 0.543541 3_3:-76097769 Msa0473490:CDS
GGATAGATATGTTATGGGAT+AGG 0.544147 3_3:-76094858 Msa0473490:three_prime_UTR
TATTAATGAAAACAAAGTTA+CGG 0.545367 3_3:-76096357 Msa0473490:CDS
GGTACTGAAACTGCAAAAGC+GGG 0.549723 3_3:+76097846 None:intergenic
TAGTCTTTCCCAAACACCAT+AGG 0.557118 3_3:-76094965 Msa0473490:three_prime_UTR
CCTGAAGAGTTTCCACAGAA+GGG 0.557973 3_3:-76095822 Msa0473490:CDS
AAGTTGGTTAAAGTTGTTTG+AGG 0.558821 3_3:+76097936 None:intergenic
GGAGGGTGTTAATGGAGTGC+GGG 0.560063 3_3:+76097971 None:intergenic
ATTCCTTCTGAAACTGTACT+GGG 0.561008 3_3:+76095760 None:intergenic
TGCATTGTGTTATGAGACAA+TGG 0.562265 3_3:-76097643 Msa0473490:CDS
GATTGATGAGGAACCAAATG+AGG 0.565692 3_3:-76097685 Msa0473490:CDS
TGGAGGGTGTTAATGGAGTG+CGG 0.568184 3_3:+76097970 None:intergenic
TCATCAAGAAATCCCTTCTG+TGG 0.572197 3_3:+76095810 None:intergenic
TGAAGAGCTCTAACAAGAAG+AGG 0.582607 3_3:+76097570 None:intergenic
AGGAACCAAATGAGGTTGAG+TGG 0.584513 3_3:-76097677 Msa0473490:CDS
ACGAATTCGTGGCAAAAGAA+GGG 0.586466 3_3:+76098070 None:intergenic
TTATTGCAGATACGAATTCG+TGG 0.587857 3_3:+76098059 None:intergenic
AACCCCTTGACTCGCATCAG+CGG 0.589559 3_3:+76095059 None:intergenic
CCATAGGAGAAAGCTCAGCT+TGG 0.594126 3_3:-76094949 Msa0473490:three_prime_UTR
AGGTACTGAAACTGCAAAAG+CGG 0.602398 3_3:+76097845 None:intergenic
TGTTGAAGTGAAATTGATAG+GGG 0.604513 3_3:+76098035 None:intergenic
TGTGAAGAGGTTGATTGATG+AGG 0.608344 3_3:-76097697 Msa0473490:CDS
TGTTTGAGGTGAGAAAATTG+TGG 0.610889 3_3:+76097950 None:intergenic
ATCCCCAGTACAGTTTCAGA+AGG 0.615032 3_3:-76095763 Msa0473490:CDS
GAAGGATTCAAGAAATGTTG+AGG 0.622010 3_3:-76097781 Msa0473490:CDS
TGTATGGGAAAATTAGGAGA+GGG 0.623027 3_3:-76097743 Msa0473490:CDS
ATTTCAGCTGAATCAACAGA+AGG 0.625556 3_3:+76097825 None:intergenic
TGAGGTGAGAAAATTGTGGA+GGG 0.628555 3_3:+76097954 None:intergenic
ATCCGCTGATGCGAGTCAAG+GGG 0.635859 3_3:-76095061 Msa0473490:three_prime_UTR
TGAGTAGATGAAGAGAGTGG+TGG 0.640354 3_3:+76098118 None:intergenic
TTCTGAGTAGATGAAGAGAG+TGG 0.641757 3_3:+76098115 None:intergenic
GTGTATGGGAAAATTAGGAG+AGG 0.651978 3_3:-76097744 Msa0473490:CDS
AGATAAGGCCTAAAATCTCG+AGG 0.652081 3_3:+76096114 None:intergenic
TGTATTTGAAATGCTGAACA+AGG 0.665874 3_3:-76096393 Msa0473490:CDS
TTGAGGTGAGAAAATTGTGG+AGG 0.671928 3_3:+76097953 None:intergenic
ATAGTGATAAATGGGTAGCA+CGG 0.676425 3_3:+76098003 None:intergenic
AACCAAATGAGGTTGAGTGG+AGG 0.677766 3_3:-76097674 Msa0473490:CDS
TAATGAAAACAAAGTTACGG+AGG 0.686188 3_3:-76096354 Msa0473490:CDS
TTCCTTCTGAAACTGTACTG+GGG 0.733749 3_3:+76095761 None:intergenic
CATTGTGTTATGAGACAATG+GGG 0.737873 3_3:-76097641 Msa0473490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAATTTTGATTAGAAATT+TGG - chr3_3:76095529-76095548 Msa0473490:intron 15.0%
!!! TAATACAATTACTATTTTGA+CGG + chr3_3:76096403-76096422 None:intergenic 15.0%
!! TATTAATGAAAACAAAGTTA+CGG - chr3_3:76096597-76096616 Msa0473490:intron 15.0%
!!! TTATTTTCAAAACAATTTCT+TGG + chr3_3:76097650-76097669 None:intergenic 15.0%
!! AATAATTGTAGAAAAAAACT+CGG - chr3_3:76097869-76097888 Msa0473490:CDS 15.0%
!!! AAAGTTTCATTTTTTCTCAT+TGG - chr3_3:76095051-76095070 Msa0473490:three_prime_UTR 20.0%
!!! AAGTTTCATTTTTTCTCATT+GGG - chr3_3:76095052-76095071 Msa0473490:three_prime_UTR 20.0%
!!! TATATCTGTTTTTGTTTTGA+TGG - chr3_3:76095426-76095445 Msa0473490:intron 20.0%
!!! TTTTGATTATGTTGAAAAGT+TGG - chr3_3:76095479-76095498 Msa0473490:intron 20.0%
!!! ATATGAATGCTTTTTTGTTT+AGG - chr3_3:76095502-76095521 Msa0473490:intron 20.0%
!!! ACTAAGTTGAAAAGAATTTA+TGG + chr3_3:76095673-76095692 None:intergenic 20.0%
!! AATAAAGAGTTAAGAACTTA+GGG + chr3_3:76095985-76096004 None:intergenic 20.0%
!! AAATAAAGAGTTAAGAACTT+AGG + chr3_3:76095986-76096005 None:intergenic 20.0%
!! CAAAACAATATAAGCATAAT+AGG + chr3_3:76096090-76096109 None:intergenic 20.0%
!! TTTATGTGATGAATATTAGA+CGG - chr3_3:76096159-76096178 Msa0473490:CDS 20.0%
!!! TAATATAGTTCTGTAAGATA+TGG - chr3_3:76096970-76096989 Msa0473490:intron 20.0%
!! CAATACAATAATTTCATGAA+TGG + chr3_3:76097016-76097035 None:intergenic 20.0%
!!! ATTTTTACCTTTCCTATTTT+TGG + chr3_3:76097239-76097258 None:intergenic 20.0%
!! AATAGGAAAGGTAAAAATAT+AGG - chr3_3:76097241-76097260 Msa0473490:intron 20.0%
!! AATAAAGAACTACTTATTGT+AGG - chr3_3:76097665-76097684 Msa0473490:CDS 20.0%
!! ATAATTGTAGAAAAAAACTC+GGG - chr3_3:76097870-76097889 Msa0473490:CDS 20.0%
!!! AAAAGAGTGTAAAATCAATT+GGG + chr3_3:76098122-76098141 None:intergenic 20.0%
!!! AAAAAGAGTGTAAAATCAAT+TGG + chr3_3:76098123-76098142 None:intergenic 20.0%
!!! TTTTTTCCCTTCAATCAAAA+TGG - chr3_3:76094801-76094820 Msa0473490:three_prime_UTR 25.0%
! TTGTTGAAGTGAAATTGATA+GGG + chr3_3:76094923-76094942 None:intergenic 25.0%
! ATTGTTGAAGTGAAATTGAT+AGG + chr3_3:76094924-76094943 None:intergenic 25.0%
!! AACTTTTTGTGAAATGAAGT+TGG + chr3_3:76095037-76095056 None:intergenic 25.0%
!! AGGATTGTATTTGGAAATTT+TGG - chr3_3:76095353-76095372 Msa0473490:intron 25.0%
!!! ATTTGGAAATTTTGGAGAAT+TGG - chr3_3:76095361-76095380 Msa0473490:intron 25.0%
! TTTGATGGAATTATGAATGT+TGG - chr3_3:76095441-76095460 Msa0473490:intron 25.0%
!!! ACATTGATAATTGTTGACTT+AGG - chr3_3:76095565-76095584 Msa0473490:intron 25.0%
!!! CATTGATAATTGTTGACTTA+GGG - chr3_3:76095566-76095585 Msa0473490:intron 25.0%
!!! TAGTTGTGAGAATGTTTTAA+AGG - chr3_3:76095621-76095640 Msa0473490:intron 25.0%
!!! AGTTGTGAGAATGTTTTAAA+GGG - chr3_3:76095622-76095641 Msa0473490:intron 25.0%
!!! TGTTTTTTCATAAGTTATCG+TGG + chr3_3:76095708-76095727 None:intergenic 25.0%
! ATGCAATCATATTTGCATAA+AGG + chr3_3:76095934-76095953 None:intergenic 25.0%
! TCACATAAATTTACAATCAC+AGG + chr3_3:76096148-76096167 None:intergenic 25.0%
!!! ATAGCTGTTATTTTGACAAT+TGG + chr3_3:76096202-76096221 None:intergenic 25.0%
! AATTGTCAAAATAACAGCTA+TGG - chr3_3:76096201-76096220 Msa0473490:intron 25.0%
! AATCTGAATCCAAAGTAAAA+TGG + chr3_3:76096299-76096318 None:intergenic 25.0%
!!! GTCTTTTTGGAGTAATTATT+TGG - chr3_3:76096739-76096758 Msa0473490:intron 25.0%
! AGAACAAAAATTAAAGTCAG+AGG + chr3_3:76096910-76096929 None:intergenic 25.0%
! ATGTTAAAAGAATATGTTGC+AGG - chr3_3:76097038-76097057 Msa0473490:intron 25.0%
! TGTTAAAAGAATATGTTGCA+GGG - chr3_3:76097039-76097058 Msa0473490:intron 25.0%
! ATACAGTCTTCTAGATAAAA+AGG - chr3_3:76097068-76097087 Msa0473490:intron 25.0%
!! TCAATTTTCTGACCAAAAAT+AGG - chr3_3:76097224-76097243 Msa0473490:intron 25.0%
!!! TGTGTTTCACATTTTTAAGT+AGG - chr3_3:76097500-76097519 Msa0473490:intron 25.0%
! AGGATTAGAAAGAATAAAAG+AGG - chr3_3:76097685-76097704 Msa0473490:CDS 25.0%
! GGATTAGAAAGAATAAAAGA+GGG - chr3_3:76097686-76097705 Msa0473490:CDS 25.0%
! AATTGGGATAGATATGTTAT+GGG - chr3_3:76098091-76098110 Msa0473490:CDS 25.0%
!! AGTAGATTAAAAAGCATATG+CGG + chr3_3:76098148-76098167 None:intergenic 25.0%
!!! TAGAAGCCATTTTGATTGAA+GGG + chr3_3:76094810-76094829 None:intergenic 30.0%
TGTTGAAGTGAAATTGATAG+GGG + chr3_3:76094922-76094941 None:intergenic 30.0%
ACAAGTGCATAGTGATAAAT+GGG + chr3_3:76094962-76094981 None:intergenic 30.0%
AACAAGTGCATAGTGATAAA+TGG + chr3_3:76094963-76094982 None:intergenic 30.0%
! AAGTTGGTTAAAGTTGTTTG+AGG + chr3_3:76095021-76095040 None:intergenic 30.0%
!!! TGTTGATTCAGCTGAAATTT+TGG - chr3_3:76095134-76095153 Msa0473490:intron 30.0%
!! AATTTTGGAGGAGAAGATTT+TGG - chr3_3:76095149-76095168 Msa0473490:intron 30.0%
TAAGGCTAAAGGATTGTATT+TGG - chr3_3:76095344-76095363 Msa0473490:intron 30.0%
AATATGATTGCATGTTGACA+TGG - chr3_3:76095941-76095960 Msa0473490:intron 30.0%
TAAAACCCATGTATGAATTC+TGG - chr3_3:76096032-76096051 Msa0473490:intron 30.0%
AACATCCAGAATTCATACAT+GGG + chr3_3:76096040-76096059 None:intergenic 30.0%
TTGAGCCTTAGTATGTATTT+CGG - chr3_3:76096115-76096134 Msa0473490:CDS 30.0%
TACTTTGGATTCAGATTTGA+AGG - chr3_3:76096302-76096321 Msa0473490:intron 30.0%
! GGTAAATTGATTTCATGACA+TGG + chr3_3:76096431-76096450 None:intergenic 30.0%
TGTCATGAAATCAATTTACC+AGG - chr3_3:76096431-76096450 Msa0473490:CDS 30.0%
! TGTATTTGAAATGCTGAACA+AGG - chr3_3:76096561-76096580 Msa0473490:intron 30.0%
TAATGAAAACAAAGTTACGG+AGG - chr3_3:76096600-76096619 Msa0473490:intron 30.0%
! AACCATGAACAATGTCTTTT+TGG - chr3_3:76096726-76096745 Msa0473490:intron 30.0%
! ATCAAAATCCTCGAGATTTT+AGG - chr3_3:76096832-76096851 Msa0473490:intron 30.0%
TTTCTGACCAAAAATAGGAA+AGG - chr3_3:76097229-76097248 Msa0473490:intron 30.0%
TAAAGTAAGATGTAGACAAG+AGG - chr3_3:76097364-76097383 Msa0473490:intron 30.0%
AAAGTAAGATGTAGACAAGA+GGG - chr3_3:76097365-76097384 Msa0473490:intron 30.0%
TCATAGCATTTCTCAATCAA+CGG + chr3_3:76097567-76097586 None:intergenic 30.0%
AGAAATGCTATGAGAAATGT+TGG - chr3_3:76097574-76097593 Msa0473490:CDS 30.0%
TCAATGACTCTATTGTAGAA+GGG + chr3_3:76097733-76097752 None:intergenic 30.0%
ATCAATGACTCTATTGTAGA+AGG + chr3_3:76097734-76097753 None:intergenic 30.0%
! AGGACACAATTAATTTTGAG+GGG + chr3_3:76097816-76097835 None:intergenic 30.0%
! GAGGACACAATTAATTTTGA+GGG + chr3_3:76097817-76097836 None:intergenic 30.0%
! TGAGGACACAATTAATTTTG+AGG + chr3_3:76097818-76097837 None:intergenic 30.0%
CAAAATTAATTGTGTCCTCA+AGG - chr3_3:76097818-76097837 Msa0473490:CDS 30.0%
TTTAATAGATTGCAACCTTG+AGG + chr3_3:76097836-76097855 None:intergenic 30.0%
!!! AACAACTGTGTTTTGATAAG+TGG + chr3_3:76097957-76097976 None:intergenic 30.0%
! TATTTACTTGATGACCAGAT+TGG + chr3_3:76098046-76098065 None:intergenic 30.0%
AAGCAATCTGAATTGTGAAT+TGG - chr3_3:76098074-76098093 Msa0473490:CDS 30.0%
AGCAATCTGAATTGTGAATT+GGG - chr3_3:76098075-76098094 Msa0473490:CDS 30.0%
GAATTGGGATAGATATGTTA+TGG - chr3_3:76098090-76098109 Msa0473490:CDS 30.0%
!!! GTAGAAGCCATTTTGATTGA+AGG + chr3_3:76094811-76094830 None:intergenic 35.0%
TTATTGCAGATACGAATTCG+TGG + chr3_3:76094898-76094917 None:intergenic 35.0%
ATAGTGATAAATGGGTAGCA+CGG + chr3_3:76094954-76094973 None:intergenic 35.0%
!! AAAATTGTGGAGGGTGTTAA+TGG + chr3_3:76094994-76095013 None:intergenic 35.0%
! TGTTTGAGGTGAGAAAATTG+TGG + chr3_3:76095007-76095026 None:intergenic 35.0%
ATTTCAGCTGAATCAACAGA+AGG + chr3_3:76095132-76095151 None:intergenic 35.0%
! TGATTCAGCTGAAATTTTGG+AGG - chr3_3:76095137-76095156 Msa0473490:intron 35.0%
GAAGGATTCAAGAAATGTTG+AGG - chr3_3:76095173-76095192 Msa0473490:intron 35.0%
AAATGTTGAGGCTCTTAAAG+TGG - chr3_3:76095185-76095204 Msa0473490:intron 35.0%
CTCTTAAAGTGGTTGTGTAT+GGG - chr3_3:76095196-76095215 Msa0473490:intron 35.0%
TGGTTGTGTATGGGAAAATT+AGG - chr3_3:76095205-76095224 Msa0473490:intron 35.0%
TGTATGGGAAAATTAGGAGA+GGG - chr3_3:76095211-76095230 Msa0473490:intron 35.0%
TGCATTGTGTTATGAGACAA+TGG - chr3_3:76095311-76095330 Msa0473490:intron 35.0%
GCATTGTGTTATGAGACAAT+GGG - chr3_3:76095312-76095331 Msa0473490:intron 35.0%
CATTGTGTTATGAGACAATG+GGG - chr3_3:76095313-76095332 Msa0473490:intron 35.0%
! AAACAAGTTGTGTTGCTGAT+TGG - chr3_3:76095832-76095851 Msa0473490:CDS 35.0%
! GATTGGTAATCATGGCTATT+AGG - chr3_3:76095849-76095868 Msa0473490:CDS 35.0%
CAACATCCAGAATTCATACA+TGG + chr3_3:76096041-76096060 None:intergenic 35.0%
TGAGCCTTAGTATGTATTTC+GGG - chr3_3:76096116-76096135 Msa0473490:CDS 35.0%
TCTTCCCGAAATACATACTA+AGG + chr3_3:76096123-76096142 None:intergenic 35.0%
TTAGTATGTATTTCGGGAAG+AGG - chr3_3:76096122-76096141 Msa0473490:CDS 35.0%
! AACTGTGCAGTGTTGTTAAA+TGG - chr3_3:76096229-76096248 Msa0473490:intron 35.0%
CTGAATCCAAAGTAAAATGG+CGG + chr3_3:76096296-76096315 None:intergenic 35.0%
TTTGGATTCAGATTTGAAGG+TGG - chr3_3:76096305-76096324 Msa0473490:intron 35.0%
TTTGCTAGATGCTTCTTTGA+CGG - chr3_3:76096328-76096347 Msa0473490:CDS 35.0%
!!! ACTATTTTGACGGCATTTTG+TGG + chr3_3:76096393-76096412 None:intergenic 35.0%
AACAAACAAATTGAGTGTCC+TGG + chr3_3:76096452-76096471 None:intergenic 35.0%
! AGTGATACTCTCTTTTCTAC+AGG - chr3_3:76096498-76096517 Msa0473490:intron 35.0%
! GTGATACTCTCTTTTCTACA+GGG - chr3_3:76096499-76096518 Msa0473490:intron 35.0%
GTGATGCACAAAAACAATGA+GGG - chr3_3:76096532-76096551 Msa0473490:intron 35.0%
TTCAGCATTTCAAATACAGC+AGG + chr3_3:76096559-76096578 None:intergenic 35.0%
TTACGGAGGAGAGAAATATA+AGG - chr3_3:76096614-76096633 Msa0473490:intron 35.0%
AACTCGTAGTAGATAAGCAA+AGG + chr3_3:76096699-76096718 None:intergenic 35.0%
CTCCAAAAAGACATTGTTCA+TGG + chr3_3:76096731-76096750 None:intergenic 35.0%
ATAACATATGTGTGCTTTGC+AGG - chr3_3:76096767-76096786 Msa0473490:intron 35.0%
TAACATATGTGTGCTTTGCA+GGG - chr3_3:76096768-76096787 Msa0473490:intron 35.0%
CAGTCTTCTAGATAAAAAGG+AGG - chr3_3:76097071-76097090 Msa0473490:intron 35.0%
!! ATTCCTTCTGAAACTGTACT+GGG + chr3_3:76097197-76097216 None:intergenic 35.0%
!! AATTCCTTCTGAAACTGTAC+TGG + chr3_3:76097198-76097217 None:intergenic 35.0%
TTCCCTTTATTCTAATGTCC+TGG - chr3_3:76097781-76097800 Msa0473490:CDS 35.0%
CACCAGGACATTAGAATAAA+GGG + chr3_3:76097786-76097805 None:intergenic 35.0%
TCACCAGGACATTAGAATAA+AGG + chr3_3:76097787-76097806 None:intergenic 35.0%
AAACACAGTTGTTGTCAAAG+AGG - chr3_3:76097964-76097983 Msa0473490:CDS 35.0%
GGATAGATATGTTATGGGAT+AGG - chr3_3:76098096-76098115 Msa0473490:CDS 35.0%
TTCTGAGTAGATGAAGAGAG+TGG + chr3_3:76094842-76094861 None:intergenic 40.0%
AGAAGGGAATTGGGAAGATT+TGG + chr3_3:76094871-76094890 None:intergenic 40.0%
ACGAATTCGTGGCAAAAGAA+GGG + chr3_3:76094887-76094906 None:intergenic 40.0%
TACGAATTCGTGGCAAAAGA+AGG + chr3_3:76094888-76094907 None:intergenic 40.0%
TGAGGTGAGAAAATTGTGGA+GGG + chr3_3:76095003-76095022 None:intergenic 40.0%
TTGAGGTGAGAAAATTGTGG+AGG + chr3_3:76095004-76095023 None:intergenic 40.0%
!! AGGTACTGAAACTGCAAAAG+CGG + chr3_3:76095112-76095131 None:intergenic 40.0%
GCTCTTAAAGTGGTTGTGTA+TGG - chr3_3:76095195-76095214 Msa0473490:intron 40.0%
GTGTATGGGAAAATTAGGAG+AGG - chr3_3:76095210-76095229 Msa0473490:intron 40.0%
AAGCTGAGAAGTTTGTGAAG+AGG - chr3_3:76095244-76095263 Msa0473490:intron 40.0%
! TGTGAAGAGGTTGATTGATG+AGG - chr3_3:76095257-76095276 Msa0473490:intron 40.0%
GATTGATGAGGAACCAAATG+AGG - chr3_3:76095269-76095288 Msa0473490:intron 40.0%
! GACAATGGGGTATTTGAGTA+AGG - chr3_3:76095326-76095345 Msa0473490:intron 40.0%
GGGTATTTGAGTAAGGCTAA+AGG - chr3_3:76095333-76095352 Msa0473490:intron 40.0%
! TGAAGAGCTCTAACAAGAAG+AGG + chr3_3:76095387-76095406 None:intergenic 40.0%
!! TTGTTGACTTAGGGTCTGTT+TGG - chr3_3:76095575-76095594 Msa0473490:intron 40.0%
AAGTTATCGTGGAGAGCTTA+TGG + chr3_3:76095697-76095716 None:intergenic 40.0%
! GTGTTGCTGATTGGTAATCA+TGG - chr3_3:76095841-76095860 Msa0473490:CDS 40.0%
TATGACGCTTGTCAAAACAC+CGG + chr3_3:76096266-76096285 None:intergenic 40.0%
!! TGAACACCGCCATTTTACTT+TGG - chr3_3:76096287-76096306 Msa0473490:intron 40.0%
! ACTCTCTTTTCTACAGGGTT+TGG - chr3_3:76096504-76096523 Msa0473490:intron 40.0%
! TTTTCTACAGGGTTTGGCTA+TGG - chr3_3:76096510-76096529 Msa0473490:intron 40.0%
GGTGATGCACAAAAACAATG+AGG - chr3_3:76096531-76096550 Msa0473490:intron 40.0%
AGATAAGGCCTAAAATCTCG+AGG + chr3_3:76096843-76096862 None:intergenic 40.0%
!! TTTTAGGCCTTATCTTTGCC+AGG - chr3_3:76096848-76096867 Msa0473490:intron 40.0%
AAACTCACCTGGCAAAGATA+AGG + chr3_3:76096858-76096877 None:intergenic 40.0%
GATTTGCATACAAACTCACC+TGG + chr3_3:76096869-76096888 None:intergenic 40.0%
TCATCAAGAAATCCCTTCTG+TGG + chr3_3:76097147-76097166 None:intergenic 40.0%
GATATCACCTTAGCAGCAAA+AGG - chr3_3:76097165-76097184 Msa0473490:intron 40.0%
!! TTCCTTCTGAAACTGTACTG+GGG + chr3_3:76097196-76097215 None:intergenic 40.0%
AGCACATCACACTCTTGTAA+AGG - chr3_3:76097312-76097331 Msa0473490:intron 40.0%
ACTAACAGCACACTCTTGTT+AGG - chr3_3:76097622-76097641 Msa0473490:CDS 40.0%
TGTAGAAGGGAAACCCATAA+AGG + chr3_3:76097720-76097739 None:intergenic 40.0%
! AGGAAAGTGCACAGATCAAT+TGG + chr3_3:76097931-76097950 None:intergenic 40.0%
TAGTCTTTCCCAAACACCAT+AGG - chr3_3:76097989-76098008 Msa0473490:CDS 40.0%
AGCTTTCTCCTATGGTGTTT+GGG + chr3_3:76098000-76098019 None:intergenic 40.0%
TGAGTAGATGAAGAGAGTGG+TGG + chr3_3:76094839-76094858 None:intergenic 45.0%
CGTGGCAAAAGAAGGGAATT+GGG + chr3_3:76094880-76094899 None:intergenic 45.0%
TCGTGGCAAAAGAAGGGAAT+TGG + chr3_3:76094881-76094900 None:intergenic 45.0%
! GGTACTGAAACTGCAAAAGC+GGG + chr3_3:76095111-76095130 None:intergenic 45.0%
!! GGAGGAGAAGATTTTGGAGA+AGG - chr3_3:76095155-76095174 Msa0473490:intron 45.0%
AGGAACCAAATGAGGTTGAG+TGG - chr3_3:76095277-76095296 Msa0473490:intron 45.0%
AACCAAATGAGGTTGAGTGG+AGG - chr3_3:76095280-76095299 Msa0473490:intron 45.0%
GATGAATATTAGACGGCGCT+AGG - chr3_3:76096166-76096185 Msa0473490:CDS 45.0%
! GCTTCTTTGACGGCATTTTG+TGG - chr3_3:76096338-76096357 Msa0473490:CDS 45.0%
TGCACAAATGCGTGTTGTAC+AGG - chr3_3:76096645-76096664 Msa0473490:intron 45.0%
CCTGAAGAGTTTCCACAGAA+GGG - chr3_3:76097132-76097151 Msa0473490:intron 45.0%
! GGATGTTCCTTTTGCTGCTA+AGG + chr3_3:76097175-76097194 None:intergenic 45.0%
ATCCCCAGTACAGTTTCAGA+AGG - chr3_3:76097191-76097210 Msa0473490:intron 45.0%
! AGATGTAGACAAGAGGGTAC+TGG - chr3_3:76097371-76097390 Msa0473490:intron 45.0%
CTCCAAACCATGCACTACAA+GGG + chr3_3:76097441-76097460 None:intergenic 45.0%
ACTCCAAACCATGCACTACA+AGG + chr3_3:76097442-76097461 None:intergenic 45.0%
! AGTCCGAGATTTTGCTTGTC+TGG - chr3_3:76097459-76097478 Msa0473490:intron 45.0%
GAGCCAGACAAGCAAAATCT+CGG + chr3_3:76097465-76097484 None:intergenic 45.0%
AGAGGGAGATCTCTCCTTTA+TGG - chr3_3:76097703-76097722 Msa0473490:CDS 45.0%
GAGGGAGATCTCTCCTTTAT+GGG - chr3_3:76097704-76097723 Msa0473490:CDS 45.0%
TTTGAGGGGATTGTATCACC+AGG + chr3_3:76097802-76097821 None:intergenic 45.0%
!!! TGTGTTTTGATAAGTGGCGC+AGG + chr3_3:76097951-76097970 None:intergenic 45.0%
GAGCTTTCTCCTATGGTGTT+TGG + chr3_3:76098001-76098020 None:intergenic 45.0%
AGTGAACCTGGTAACCAATC+TGG - chr3_3:76098029-76098048 Msa0473490:CDS 45.0%
! TGATGACCAGATTGGTTACC+AGG + chr3_3:76098038-76098057 None:intergenic 45.0%
!! TGGAGGGTGTTAATGGAGTG+CGG + chr3_3:76094987-76095006 None:intergenic 50.0%
AGCCTCCACTCAACCTCATT+TGG + chr3_3:76095285-76095304 None:intergenic 50.0%
GCTTGTCAAAACACCGGTCA+CGG + chr3_3:76096260-76096279 None:intergenic 50.0%
GTGTGCTTTGCAGGGTGATT+TGG - chr3_3:76096776-76096795 Msa0473490:intron 50.0%
! TGCTTTGCAGGGTGATTTGG+AGG - chr3_3:76096779-76096798 Msa0473490:intron 50.0%
! TTTGCAGGGTGATTTGGAGG+AGG - chr3_3:76096782-76096801 Msa0473490:intron 50.0%
! TTGCAGGGTGATTTGGAGGA+GGG - chr3_3:76096783-76096802 Msa0473490:intron 50.0%
GCCTGAAGAGTTTCCACAGA+AGG - chr3_3:76097131-76097150 Msa0473490:intron 50.0%
CCCTTCTGTGGAAACTCTTC+AGG + chr3_3:76097135-76097154 None:intergenic 50.0%
TTGCTAGCCCTTGTAGTGCA+TGG - chr3_3:76097431-76097450 Msa0473490:intron 50.0%
AGCCCTTGTAGTGCATGGTT+TGG - chr3_3:76097436-76097455 Msa0473490:intron 50.0%
CCAAGCTGAGCTTTCTCCTA+TGG + chr3_3:76098008-76098027 None:intergenic 50.0%
CCATAGGAGAAAGCTCAGCT+TGG - chr3_3:76098005-76098024 Msa0473490:CDS 50.0%
!! GGAGGGTGTTAATGGAGTGC+GGG + chr3_3:76094986-76095005 None:intergenic 55.0%
TTAAATGGCGACGCCGTGAC+CGG - chr3_3:76096244-76096263 Msa0473490:intron 55.0%
GATCCGCTGATGCGAGTCAA+GGG - chr3_3:76097892-76097911 Msa0473490:CDS 55.0%
ATCCGCTGATGCGAGTCAAG+GGG - chr3_3:76097893-76097912 Msa0473490:CDS 55.0%
! AACCCCTTGACTCGCATCAG+CGG + chr3_3:76097898-76097917 None:intergenic 55.0%
!! GCTCAGCTTGGTAGTGAACC+TGG - chr3_3:76098017-76098036 Msa0473490:CDS 55.0%
GGATCCGCTGATGCGAGTCA+AGG - chr3_3:76097891-76097910 Msa0473490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 76094798 76098178 76094798 ID=Msa0473490;Name=Msa0473490
chr3_3 mRNA 76094798 76098178 76094798 ID=Msa0473490-mRNA-1;Parent=Msa0473490;Name=Msa0473490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=22|1|1|1|0.75|0.6|5|304|333
chr3_3 exon 76094798 76095096 76094798 ID=Msa0473490-mRNA-1:exon:19890;Parent=Msa0473490-mRNA-1
chr3_3 exon 76095726 76095916 76095726 ID=Msa0473490-mRNA-1:exon:19889;Parent=Msa0473490-mRNA-1
chr3_3 exon 76096107 76096187 76096107 ID=Msa0473490-mRNA-1:exon:19888;Parent=Msa0473490-mRNA-1
chr3_3 exon 76096310 76096456 76096310 ID=Msa0473490-mRNA-1:exon:19887;Parent=Msa0473490-mRNA-1
chr3_3 exon 76097569 76098178 76097569 ID=Msa0473490-mRNA-1:exon:19886;Parent=Msa0473490-mRNA-1
chr3_3 five_prime_UTR 76098157 76098178 76098157 ID=Msa0473490-mRNA-1:five_prime_utr;Parent=Msa0473490-mRNA-1
chr3_3 CDS 76097569 76098156 76097569 ID=Msa0473490-mRNA-1:cds;Parent=Msa0473490-mRNA-1
chr3_3 CDS 76096310 76096456 76096310 ID=Msa0473490-mRNA-1:cds;Parent=Msa0473490-mRNA-1
chr3_3 CDS 76096107 76096187 76096107 ID=Msa0473490-mRNA-1:cds;Parent=Msa0473490-mRNA-1
chr3_3 CDS 76095731 76095916 76095731 ID=Msa0473490-mRNA-1:cds;Parent=Msa0473490-mRNA-1
chr3_3 three_prime_UTR 76095726 76095730 76095726 ID=Msa0473490-mRNA-1:three_prime_utr;Parent=Msa0473490-mRNA-1
chr3_3 three_prime_UTR 76094798 76095096 76094798 ID=Msa0473490-mRNA-1:three_prime_utr;Parent=Msa0473490-mRNA-1
Gene Sequence

>Msa0473490

ATGGCTTCTACTGCAACCACCACTCTCTTCATCTACTCAGAATTCAAACCAAATCTTCCCAATTCCCTTCTTTTGCCACGAATTCGTATCTGCAATAAACCCCTATCAATTTCACTTCAACAATCAAAATTCCGTGCTACCCATTTATCACTATGCACTTGTTCCCGCACTCCATTAACACCCTCCACAATTTTCTCACCTCAAACAACTTTAACCAACTTCATTTCACAAAAAGTTTCATTTTTTCTCATTGGGTCGTTCATCTTCATCGCTTACTTCAGCAGAAAACCCGCTTTTGCAGTTTCAGTACCTTCTGTTGATTCAGCTGAAATTTTGGAGGAGAAGATTTTGGAGAAGGATTCAAGAAATGTTGAGGCTCTTAAAGTGGTTGTGTATGGGAAAATTAGGAGAGGGAAGTGTAAAGAAGCTGAGAAGTTTGTGAAGAGGTTGATTGATGAGGAACCAAATGAGGTTGAGTGGAGGCTTTTGCTTGCATTGTGTTATGAGACAATGGGGTATTTGAGTAAGGCTAAAGGATTGTATTTGGAAATTTTGGAGAATTGGCCTCTTCTTGTTAGAGCTCTTCATGGTTTGGCTATGGTGATGCACAAAAACAATGAGGGTCCTGCTGTATTTGAAATGCTGAACAAGGCTCTAGAGTTAGCTATTAATGAAAACAAAGTTACGGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCGTGTTGTACAGGGTGATTTGGAGGAGGGCTTGAAAAGATGTCAAGATTTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATCTTTGCCAGGGAATAATATACAGTCTTCTAGATAAAAAGGAGGAAGCTGCAAAACAGTTTGAAACATATCAAGCTCTTGTGCCTGAAGAGTTTCCACAGAAGGGATTTCTTGATGATATCACCTTAGCAGCAAAAGGAACATCCCCAGTACAGTTTCAGAAGGAATTCAGAAATCAATTTTCTGACCAAAAATAG

Protein sequence

>Msa0473490

MASTATTTLFIYSEFKPNLPNSLLLPRIRICNKPLSISLQQSKFRATHLSLCTCSRTPLTPSTIFSPQTTLTNFISQKVSFFLIGSFIFIAYFSRKPAFAVSVPSVDSAEILEEKILEKDSRNVEALKVVVYGKIRRGKCKEAEKFVKRLIDEEPNEVEWRLLLALCYETMGYLSKAKGLYLEILENWPLLVRALHGLAMVMHKNNEGPAVFEMLNKALELAINENKVTEERNIRILIAQMRVVQGDLEEGLKRCQDLIDQNPRDFRPYLCQGIIYSLLDKKEEAAKQFETYQALVPEEFPQKGFLDDITLAAKGTSPVQFQKEFRNQFSDQK*