AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1326000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326000 MtrunA17_Chr8g0360611 87.972 424 14 3 1 416 1 395 0.0 748
Msa1326000 MtrunA17_Chr7g0276581 33.529 170 78 4 75 238 91 231 2.95e-17 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1326000 AT1G53250.1 35.503 338 128 6 82 417 101 350 5.48e-42 152
Msa1326000 AT1G53800.1 34.351 131 57 2 81 211 103 204 9.16e-14 73.6
Msa1326000 AT1G53800.2 34.351 131 57 2 81 211 107 208 9.98e-14 73.6
Msa1326000 AT1G53800.3 34.351 131 57 2 81 211 107 208 9.98e-14 73.6

Find 83 sgRNAs with CRISPR-Local

Find 424 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACCACTCCCTCCTTTCT+TGG 0.150737 8_4:+39299423 None:intergenic
TGTGGCCTCAATTGCGGTTT+TGG 0.198465 8_4:-39302691 Msa1326000:CDS
TTTACTGTGAGTTGGAAAAT+TGG 0.201449 8_4:+39298281 None:intergenic
CCCTCCTTTCTTTGCTGATT+TGG 0.211087 8_4:+39299255 None:intergenic
AGGAAAAGTACCTTGGAATA+AGG 0.265892 8_4:-39302999 Msa1326000:CDS
CTCTTACTTGACTTCACCTT+GGG 0.334743 8_4:+39302833 None:intergenic
TTCCCAACAATTATTATTCA+AGG 0.353791 8_4:-39303222 Msa1326000:CDS
TTTCCTCTGCCTGCAGAATT+CGG 0.363745 8_4:+39299347 None:intergenic
AATGTTGATTTAGGGATTGT+TGG 0.376629 8_4:+39303151 None:intergenic
CTGAACATCCCCGTTGTCAT+AGG 0.379002 8_4:-39302436 Msa1326000:intron
GTTATTCTCTGAGACGTGTC+TGG 0.381332 8_4:-39299519 Msa1326000:CDS
TTGTGTTTACCTATGACAAC+GGG 0.385549 8_4:+39302427 None:intergenic
CAAATAAATTATTTCATTTG+TGG 0.389580 8_4:-39299291 Msa1326000:CDS
GTGGAGAAGAAGAACTTGAT+TGG 0.402138 8_4:-39299231 Msa1326000:CDS
GGAAAAGTACCTTGGAATAA+GGG 0.402627 8_4:-39302998 Msa1326000:CDS
GAGAAGCTGATGACAATTGT+TGG 0.417087 8_4:-39299316 Msa1326000:CDS
TTGTTCAACATTGTGGTGTT+CGG 0.419568 8_4:+39303111 None:intergenic
AATTAGGATGAGAACATTAG+AGG 0.421479 8_4:-39302867 Msa1326000:CDS
TGGAGAAGAAGAACTTGATT+GGG 0.436550 8_4:-39299230 Msa1326000:CDS
AAATCCAATTTACTGTGAGT+TGG 0.446177 8_4:+39298273 None:intergenic
TGCCTTGAATAATAATTGTT+GGG 0.454127 8_4:+39303220 None:intergenic
TGATTTAGGGATTGTTGGAG+GGG 0.458850 8_4:+39303156 None:intergenic
GAGAACATTAGAGGCTTTGA+AGG 0.459307 8_4:-39302858 Msa1326000:CDS
AATTCTGCAGGCAGAGGAAA+AGG 0.466502 8_4:-39299344 Msa1326000:CDS
CGACTGAAGTCACAGCGGGC+AGG 0.473175 8_4:-39299490 Msa1326000:CDS
GTTGGTTGGAAAGAGCAGTT+AGG 0.475690 8_4:+39303818 None:intergenic
TGTTTCCTTCCCTTATTCCA+AGG 0.489715 8_4:+39302989 None:intergenic
TTGATTTAGGGATTGTTGGA+GGG 0.493657 8_4:+39303155 None:intergenic
AGAATGAGGAGAATGAGAAT+AGG 0.494493 8_4:-39303034 Msa1326000:CDS
TGTTCCCAAAACCGCAATTG+AGG 0.499931 8_4:+39302686 None:intergenic
TTGCCTTGAATAATAATTGT+TGG 0.504529 8_4:+39303219 None:intergenic
GAAGGCAAAGGCCAAAGAGA+TGG 0.510646 8_4:-39299146 Msa1326000:CDS
AGACCACATATAGATAGAAC+CGG 0.512688 8_4:-39303888 Msa1326000:five_prime_UTR
GACTGAAGTCACAGCGGGCA+GGG 0.513912 8_4:-39299489 Msa1326000:CDS
GAGCAGTTAGGAAGGTGAAA+AGG 0.514326 8_4:+39303830 None:intergenic
GAAAAGGAACATGAATGAGT+TGG 0.515172 8_4:+39303846 None:intergenic
TGAGTTCCACCGAATTCTGC+AGG 0.515380 8_4:-39299356 Msa1326000:CDS
GTTGATTTAGGGATTGTTGG+AGG 0.515416 8_4:+39303154 None:intergenic
CGTGAAAATGTCAGTGTGAG+AGG 0.517623 8_4:-39303277 Msa1326000:intron
GTTACTCAAGAATTCAAACT+TGG 0.519014 8_4:-39298968 Msa1326000:CDS
ACTGAAGTCACAGCGGGCAG+GGG 0.520282 8_4:-39299488 Msa1326000:CDS
TAAATTATTTCATTTGTGGA+CGG 0.522542 8_4:-39299287 Msa1326000:CDS
ACTTGGCTCTAAATTAACTA+AGG 0.524747 8_4:-39298951 Msa1326000:intron
TTCTCATCCTAATTCGCTCA+CGG 0.524851 8_4:+39302876 None:intergenic
AAGAATCTTGTTCAACATTG+TGG 0.527596 8_4:+39303104 None:intergenic
GTTGGAAAGAGCAGTTAGGA+AGG 0.529033 8_4:+39303822 None:intergenic
AACTCAGACACCAGCGACTC+CGG 0.530721 8_4:+39303869 None:intergenic
TCAGCAAAGAAAGGAGGGAG+TGG 0.535966 8_4:-39299250 Msa1326000:CDS
ATAGCAAATGCAGCCAAGAA+AGG 0.538382 8_4:-39299436 Msa1326000:CDS
CAAACAAAGGAAAAGTACCT+TGG 0.546625 8_4:-39303006 Msa1326000:CDS
ACTCTTACTTGACTTCACCT+TGG 0.548598 8_4:+39302832 None:intergenic
GCAAATGCAGCCAAGAAAGG+AGG 0.553430 8_4:-39299433 Msa1326000:CDS
CCTCTGCCTGCAGAATTCGG+TGG 0.556848 8_4:+39299350 None:intergenic
ATAGCCAAATCAGCAAAGAA+AGG 0.558567 8_4:-39299259 Msa1326000:CDS
CCAAATCAGCAAAGAAAGGA+GGG 0.563567 8_4:-39299255 Msa1326000:CDS
CAAATGCAGCCAAGAAAGGA+GGG 0.563593 8_4:-39299432 Msa1326000:CDS
CTTGTGTTTACCTATGACAA+CGG 0.564622 8_4:+39302426 None:intergenic
AGAGCGACTGAAGTCACAGC+GGG 0.564801 8_4:-39299494 Msa1326000:CDS
GTTAAATGTGGCCTCAATTG+CGG 0.565001 8_4:-39302697 Msa1326000:CDS
GCCAAATCAGCAAAGAAAGG+AGG 0.565416 8_4:-39299256 Msa1326000:CDS
TTCCTGCAGTGATCAGATCA+AGG 0.567895 8_4:-39299551 Msa1326000:intron
TTGTTGGGAATATGATTCAA+AGG 0.569799 8_4:+39303235 None:intergenic
TTATTCTCTGAGACGTGTCT+GGG 0.580357 8_4:-39299518 Msa1326000:CDS
TCTCATCCTAATTCGCTCAC+GGG 0.585592 8_4:+39302877 None:intergenic
CTCTTGATAAAGAGAGAATG+AGG 0.588623 8_4:-39303048 Msa1326000:CDS
AGAAGTGAAGTAGCTAGAGA+AGG 0.590861 8_4:-39298318 Msa1326000:CDS
AAGTACCTTGGAATAAGGGA+AGG 0.596523 8_4:-39302994 Msa1326000:CDS
GCAGCCAAGAAAGGAGGGAG+TGG 0.599753 8_4:-39299427 Msa1326000:CDS
TTGAAGTAGAGCATGTTGGT+TGG 0.602629 8_4:+39303804 None:intergenic
GAATTCTTGAGTAACATCCT+CGG 0.607837 8_4:+39298976 None:intergenic
ACTCCGGTTCTATCTATATG+TGG 0.610701 8_4:+39303885 None:intergenic
CGGAGAATCGCAGTTAAATG+TGG 0.611385 8_4:-39302709 Msa1326000:CDS
ATATGATTCAAAGGAGTGTG+TGG 0.612561 8_4:+39303244 None:intergenic
AGAGGCTTTGAAGGACCCCA+AGG 0.638810 8_4:-39302849 Msa1326000:CDS
TCTTACTTGACTTCACCTTG+GGG 0.641871 8_4:+39302834 None:intergenic
AAGGGAAGGAAACACACTGC+AGG 0.642716 8_4:-39302980 Msa1326000:intron
AGAATAGGACTAGCAAACAA+AGG 0.645416 8_4:-39303019 Msa1326000:CDS
TGAGTTGAAGTAGAGCATGT+TGG 0.645834 8_4:+39303800 None:intergenic
AGAGAAAAGATCTCCGAGAG+AGG 0.649225 8_4:-39299060 Msa1326000:CDS
GCGTATTACAGAGAAGGCAA+AGG 0.664179 8_4:-39299158 Msa1326000:intron
AGAGGAAGACAAATGTGCCG+AGG 0.686719 8_4:-39298993 Msa1326000:CDS
AAGAGCGACTGAAGTCACAG+CGG 0.775304 8_4:-39299495 Msa1326000:CDS
TGTGTTTACCTATGACAACG+GGG 0.785259 8_4:+39302428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTCTTTTACT+TGG - chr8_4:39299447-39299466 Msa1326000:CDS 10.0%
!! TGTGAAATATTAATAAATTA+TGG + chr8_4:39299751-39299770 None:intergenic 10.0%
!!! TTTTTTATTAAGTTATAGTA+CGG - chr8_4:39301273-39301292 Msa1326000:intron 10.0%
!! TTAATAAAAATAAAAACTAG+GGG - chr8_4:39303586-39303605 Msa1326000:intron 10.0%
!!! AATTATGTCATTTTCTTTAA+GGG - chr8_4:39298357-39298376 Msa1326000:intron 15.0%
!! ACAAATTATGAAAATTATCA+AGG - chr8_4:39299680-39299699 Msa1326000:intron 15.0%
!!! TTAACAAAGGATATTTTTTT+TGG + chr8_4:39299811-39299830 None:intergenic 15.0%
!!! AAGATATTAGGTTTTTATAT+TGG - chr8_4:39299853-39299872 Msa1326000:intron 15.0%
!!! AGATATTAGGTTTTTATATT+GGG - chr8_4:39299854-39299873 Msa1326000:intron 15.0%
!!! ATCATATTAGGTTTTTATAT+TGG - chr8_4:39299979-39299998 Msa1326000:intron 15.0%
!!! ATCATATTAGGTTTTTATAT+TGG - chr8_4:39299979-39299998 Msa1326000:intron 15.0%
!!! ATCATATTAGGTTTTTATAT+TGG - chr8_4:39299979-39299998 Msa1326000:intron 15.0%
!!! TAAAAGTAACAATGTTTTTT+AGG - chr8_4:39300768-39300787 Msa1326000:intron 15.0%
!!! AATAATGTAATTGCTTTTAA+AGG - chr8_4:39301083-39301102 Msa1326000:intron 15.0%
!!! TTTCTTTTTATTGTGTTTAA+GGG + chr8_4:39301118-39301137 None:intergenic 15.0%
!! AAAGAAACTAAATAATTGTT+TGG - chr8_4:39301131-39301150 Msa1326000:intron 15.0%
!! TTGATAAAAAAATGTATTAC+AGG + chr8_4:39301209-39301228 None:intergenic 15.0%
!! AACGTAAATTTATAACTAAA+TGG + chr8_4:39301460-39301479 None:intergenic 15.0%
!! TCTTAATTATATTATTGAAG+TGG + chr8_4:39301920-39301939 None:intergenic 15.0%
!!! TTTTTGCAAAAGTATATTAT+AGG - chr8_4:39301979-39301998 Msa1326000:intron 15.0%
!!! TTTTGCAAAAGTATATTATA+GGG - chr8_4:39301980-39301999 Msa1326000:intron 15.0%
!! TAGAATATATTACTATTAGA+AGG + chr8_4:39302238-39302257 None:intergenic 15.0%
!! CAAATAAATTATTTCATTTG+TGG - chr8_4:39302703-39302722 Msa1326000:CDS 15.0%
!!! TTCAATATTTTCTCATTTAT+TGG - chr8_4:39303072-39303091 Msa1326000:CDS 15.0%
!!! TCAAAATACTATTTTCAAAA+TGG + chr8_4:39303486-39303505 None:intergenic 15.0%
!!! ATTACATACATTTTTTTGAA+GGG + chr8_4:39303547-39303566 None:intergenic 15.0%
!!! GAATTATGTCATTTTCTTTA+AGG - chr8_4:39298356-39298375 Msa1326000:intron 20.0%
!! AACAACAATAAAGTTTAAAG+AGG + chr8_4:39298634-39298653 None:intergenic 20.0%
!!! AAAAAGACAATGTTGATTTA+GGG + chr8_4:39298854-39298873 None:intergenic 20.0%
!!! AAAATCAAGGTTTTAAATAG+TGG + chr8_4:39299358-39299377 None:intergenic 20.0%
!!! CTATTTAAAACCTTGATTTT+AGG - chr8_4:39299358-39299377 Msa1326000:CDS 20.0%
!!! TGAAAATTTTTTAGTTGAAG+GGG + chr8_4:39299521-39299540 None:intergenic 20.0%
!!! CTGAAAATTTTTTAGTTGAA+GGG + chr8_4:39299522-39299541 None:intergenic 20.0%
!! ATTGAGAAGGAAAAATTATT+TGG - chr8_4:39299707-39299726 Msa1326000:intron 20.0%
!!! TTTTTTGGTTACATTAACAA+AGG + chr8_4:39299796-39299815 None:intergenic 20.0%
!! GATAGATATGTTATTAACAA+AGG + chr8_4:39299824-39299843 None:intergenic 20.0%
!! ATCTCTCTTTATAAGATATT+AGG - chr8_4:39299841-39299860 Msa1326000:intron 20.0%
!!! AGCATATTAGGTTTTTATAT+TGG - chr8_4:39300485-39300504 Msa1326000:intron 20.0%
!!! TAGTTTTATTGTATGTTACT+TGG - chr8_4:39300709-39300728 Msa1326000:intron 20.0%
!! GTATTAGTATATGTTACAAT+CGG + chr8_4:39300745-39300764 None:intergenic 20.0%
!! TGTTACCCTTATTAATATAA+GGG - chr8_4:39300903-39300922 Msa1326000:intron 20.0%
!!! GTTTCTTTTTATTGTGTTTA+AGG + chr8_4:39301119-39301138 None:intergenic 20.0%
!!! AATAAGTTAATTTTGAAGTG+TGG - chr8_4:39301329-39301348 Msa1326000:intron 20.0%
!!! TGCTAAGTAAATTTATTTTG+AGG - chr8_4:39301368-39301387 Msa1326000:intron 20.0%
!!! TGAATATTTTTCAGACATAA+GGG + chr8_4:39301871-39301890 None:intergenic 20.0%
!!! TTGAATATTTTTCAGACATA+AGG + chr8_4:39301872-39301891 None:intergenic 20.0%
!! ATTTCTCATTTGTTTGTAAT+TGG + chr8_4:39302026-39302045 None:intergenic 20.0%
!! CAAGATCATAACAAATTATT+CGG - chr8_4:39302161-39302180 Msa1326000:intron 20.0%
!!! TATTGTTAGACAGAAATTTT+AGG - chr8_4:39302347-39302366 Msa1326000:intron 20.0%
!! TAAATTATTTCATTTGTGGA+CGG - chr8_4:39302707-39302726 Msa1326000:CDS 20.0%
!! ATTTCTATAAGTCCAAAAAT+AGG + chr8_4:39303301-39303320 None:intergenic 20.0%
!!! ATTTTTGGACTTATAGAAAT+AGG - chr8_4:39303301-39303320 Msa1326000:intron 20.0%
!!! ATTAAAAAGGCATTTATCTT+AGG - chr8_4:39303454-39303473 Msa1326000:intron 20.0%
!! CTCAATTGAATATAACAATT+AGG + chr8_4:39303510-39303529 None:intergenic 20.0%
!!! GATTACATACATTTTTTTGA+AGG + chr8_4:39303548-39303567 None:intergenic 20.0%
!! TTAAAAATAAAGTAGCAATG+AGG + chr8_4:39303570-39303589 None:intergenic 20.0%
! TTATTTACTTTACTGTTGCA+CGG - chr8_4:39298268-39298287 Msa1326000:CDS 25.0%
! ATTGCAAAATAATCCTTGAA+TGG - chr8_4:39298444-39298463 Msa1326000:intron 25.0%
! TTCCCAACAATTATTATTCA+AGG - chr8_4:39298772-39298791 Msa1326000:intron 25.0%
! TGCCTTGAATAATAATTGTT+GGG + chr8_4:39298777-39298796 None:intergenic 25.0%
! TTGCCTTGAATAATAATTGT+TGG + chr8_4:39298778-39298797 None:intergenic 25.0%
!!! GAAAAAGACAATGTTGATTT+AGG + chr8_4:39298855-39298874 None:intergenic 25.0%
!!! CGACTTTATTTTACCATTTT+TGG - chr8_4:39299048-39299067 Msa1326000:CDS 25.0%
! ACAACAAAATGATCCAAAAA+TGG + chr8_4:39299064-39299083 None:intergenic 25.0%
! TGATGTGAACACAAAAATAA+AGG + chr8_4:39299209-39299228 None:intergenic 25.0%
! CCTAAATCATTTCAACAATA+AGG + chr8_4:39299244-39299263 None:intergenic 25.0%
! CCTTATTGTTGAAATGATTT+AGG - chr8_4:39299241-39299260 Msa1326000:CDS 25.0%
!!! CCTGAAAATTTTTTAGTTGA+AGG + chr8_4:39299523-39299542 None:intergenic 25.0%
!! CCTTCAACTAAAAAATTTTC+AGG - chr8_4:39299520-39299539 Msa1326000:CDS 25.0%
!! AACATAAACATGATTTTGCA+GGG + chr8_4:39299648-39299667 None:intergenic 25.0%
!! TAACATAAACATGATTTTGC+AGG + chr8_4:39299649-39299668 None:intergenic 25.0%
! TTATCAAGGATTAATTGAGA+AGG - chr8_4:39299694-39299713 Msa1326000:intron 25.0%
! ACCTTATCTTTAATCTATGT+GGG - chr8_4:39300601-39300620 Msa1326000:intron 25.0%
! ACTTGGTTATTCCAATAATA+TGG - chr8_4:39300624-39300643 Msa1326000:intron 25.0%
! TAATAAGGGTAACAGAAATT+GGG + chr8_4:39300897-39300916 None:intergenic 25.0%
! TTAATAAGGGTAACAGAAAT+TGG + chr8_4:39300898-39300917 None:intergenic 25.0%
! CTGTTACCCTTATTAATATA+AGG - chr8_4:39300902-39300921 Msa1326000:intron 25.0%
! AGTAGATTTGATGTAATGTT+TGG - chr8_4:39301026-39301045 Msa1326000:intron 25.0%
!! ATTTCACTGTGTTTTCAATA+AGG - chr8_4:39302074-39302093 Msa1326000:intron 25.0%
!!! GATTGAAATTAGTTTCTAGT+TGG + chr8_4:39302202-39302221 None:intergenic 25.0%
!!! TTTTATTTTTGCCATCTCTT+TGG + chr8_4:39302862-39302881 None:intergenic 25.0%
! ACAGATAAAAGCGATAAAAA+AGG - chr8_4:39302896-39302915 Msa1326000:intron 25.0%
!!! GATTAGTTTAAGTATTGAGA+TGG - chr8_4:39303134-39303153 Msa1326000:CDS 25.0%
! TGCAATTATAGTTTAGTGAA+AGG - chr8_4:39303164-39303183 Msa1326000:CDS 25.0%
! TGCAATTATAGTTTAGTGAA+AGG - chr8_4:39303164-39303183 Msa1326000:CDS 25.0%
! TTTGAAAACACTTGCATTAT+TGG - chr8_4:39303373-39303392 Msa1326000:intron 25.0%
! AAAAATAAAAACTAGGGGAA+AGG - chr8_4:39303591-39303610 Msa1326000:intron 25.0%
! GGTGAAATTACTATTAATGA+TGG - chr8_4:39303612-39303631 Msa1326000:intron 25.0%
! CAAATAAGATTCCATATCAA+TGG + chr8_4:39303831-39303850 None:intergenic 25.0%
!! TCTTATTTGCATTCTAATAC+AGG - chr8_4:39303842-39303861 Msa1326000:five_prime_UTR 25.0%
ACACAATAAATACAGTGTGA+GGG + chr8_4:39298239-39298258 None:intergenic 30.0%
AACACAATAAATACAGTGTG+AGG + chr8_4:39298240-39298259 None:intergenic 30.0%
TCAATATAATCACAAGTGTC+AGG + chr8_4:39298338-39298357 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+AGG + chr8_4:39298431-39298450 None:intergenic 30.0%
TTGTTGGGAATATGATTCAA+AGG + chr8_4:39298762-39298781 None:intergenic 30.0%
!! AATGTTGATTTAGGGATTGT+TGG + chr8_4:39298846-39298865 None:intergenic 30.0%
AAGAATCTTGTTCAACATTG+TGG + chr8_4:39298893-39298912 None:intergenic 30.0%
AATTAGGATGAGAACATTAG+AGG - chr8_4:39299127-39299146 Msa1326000:CDS 30.0%
! GTAAGAGTCTTTGTTTAGAT+TGG - chr8_4:39299177-39299196 Msa1326000:intron 30.0%
ATTGTTGAAATGATTTAGGC+AGG - chr8_4:39299245-39299264 Msa1326000:CDS 30.0%
TTGTTGAAATGATTTAGGCA+GGG - chr8_4:39299246-39299265 Msa1326000:CDS 30.0%
!!! GAGATACTATTTTGGTTATG+TGG - chr8_4:39299386-39299405 Msa1326000:intron 30.0%
AATTAGCATCTGACTAATGA+GGG + chr8_4:39299419-39299438 None:intergenic 30.0%
TAAGATTACAATCTGTCTTG+AGG + chr8_4:39299623-39299642 None:intergenic 30.0%
GATAGGCATGAAATCATATT+AGG - chr8_4:39299967-39299986 Msa1326000:intron 30.0%
!! ATAGGCACTGATATCATATT+AGG - chr8_4:39300135-39300154 Msa1326000:intron 30.0%
!! ATAGGCACTGATATCATATT+AGG - chr8_4:39300135-39300154 Msa1326000:intron 30.0%
TGACCAAAGTTTATAAAGAG+AGG + chr8_4:39300554-39300573 None:intergenic 30.0%
GACCAAAGTTTATAAAGAGA+GGG + chr8_4:39300553-39300572 None:intergenic 30.0%
TGACCAAAGTTTATAAAGAG+AGG + chr8_4:39300554-39300573 None:intergenic 30.0%
GACCTTATCTTTAATCTATG+TGG - chr8_4:39300600-39300619 Msa1326000:intron 30.0%
TCCCACATAGATTAAAGATA+AGG + chr8_4:39300605-39300624 None:intergenic 30.0%
GTAGGAACATTCCATATTAT+TGG + chr8_4:39300638-39300657 None:intergenic 30.0%
! TTATTGTATGTTACTTGGCT+TGG - chr8_4:39300714-39300733 Msa1326000:intron 30.0%
!!! TTGCTGTTTTTTTTCCTCTA+AGG - chr8_4:39300818-39300837 Msa1326000:intron 30.0%
!!! TGCTGTTTTTTTTCCTCTAA+GGG - chr8_4:39300819-39300838 Msa1326000:intron 30.0%
! AAAAGTATAGAATGACCTCA+AGG + chr8_4:39300872-39300891 None:intergenic 30.0%
GGCAACCCTTATATTAATAA+GGG + chr8_4:39300911-39300930 None:intergenic 30.0%
AGGCAACCCTTATATTAATA+AGG + chr8_4:39300912-39300931 None:intergenic 30.0%
TTATTAATATAAGGGTTGCC+TGG - chr8_4:39300911-39300930 Msa1326000:intron 30.0%
!!! GAAATTTTGAAGTGAGAAGT+AGG - chr8_4:39300963-39300982 Msa1326000:intron 30.0%
! TTTGTCTTTTCTTGATGCAA+TGG - chr8_4:39301480-39301499 Msa1326000:intron 30.0%
AGAAGAGAGTTAAAATCTGT+GGG + chr8_4:39301589-39301608 None:intergenic 30.0%
AACCTCTTGTGTAAAAAACA+GGG + chr8_4:39301778-39301797 None:intergenic 30.0%
TATATTATTGAAGTGGCTAC+AGG + chr8_4:39301913-39301932 None:intergenic 30.0%
! AGTATATTATAGGGAGTACA+AGG - chr8_4:39301989-39302008 Msa1326000:intron 30.0%
! GTATATTATAGGGAGTACAA+GGG - chr8_4:39301990-39302009 Msa1326000:intron 30.0%
TATACCTAATTGAAACCAAC+TGG + chr8_4:39302308-39302327 None:intergenic 30.0%
TAACAATAGAATGTAGCCAA+TGG - chr8_4:39302392-39302411 Msa1326000:intron 30.0%
AGAGATGGCAAAAATAAAAG+CGG - chr8_4:39302863-39302882 Msa1326000:CDS 30.0%
GTTACTCAAGAATTCAAACT+TGG - chr8_4:39303026-39303045 Msa1326000:CDS 30.0%
!! ACTTGGCTCTAAATTAACTA+AGG - chr8_4:39303043-39303062 Msa1326000:CDS 30.0%
TATAGTTTAGTGAAAGGCAA+AGG - chr8_4:39303170-39303189 Msa1326000:CDS 30.0%
TATAGTTTAGTGAAAGGCAA+AGG - chr8_4:39303170-39303189 Msa1326000:CDS 30.0%
! GCAAAGTTAGTTCCTATTTT+TGG - chr8_4:39303286-39303305 Msa1326000:intron 30.0%
TAATCATGATAGCCTGTATT+TGG - chr8_4:39303414-39303433 Msa1326000:intron 30.0%
TCTATCCTTAATCCAAATAC+AGG + chr8_4:39303429-39303448 None:intergenic 30.0%
AGGATAGAAGCAGATTAAAA+AGG - chr8_4:39303441-39303460 Msa1326000:intron 30.0%
!!! ATACATTTTTTTGAAGGGTC+GGG + chr8_4:39303542-39303561 None:intergenic 30.0%
!!! CATACATTTTTTTGAAGGGT+CGG + chr8_4:39303543-39303562 None:intergenic 30.0%
! ATTTACATGATTCTGAAGAC+AGG + chr8_4:39303647-39303666 None:intergenic 30.0%
! TTTACTGTGAGTTGGAAAAT+TGG + chr8_4:39303716-39303735 None:intergenic 30.0%
! TTTTCCAACTCACAGTAAAT+TGG - chr8_4:39303717-39303736 Msa1326000:intron 30.0%
AAATCCAATTTACTGTGAGT+TGG + chr8_4:39303724-39303743 None:intergenic 30.0%
AGACCACATATAGATAGAAC+CGG - chr8_4:39298106-39298125 Msa1326000:intron 35.0%
GAAAAGGAACATGAATGAGT+TGG + chr8_4:39298151-39298170 None:intergenic 35.0%
ACTAACAAAGTCTCCATTCA+AGG + chr8_4:39298460-39298479 None:intergenic 35.0%
ACTAACATAGTCTGCATTCA+AGG + chr8_4:39298492-39298511 None:intergenic 35.0%
ACTAACAGAGTGTACATTCA+GGG + chr8_4:39298524-39298543 None:intergenic 35.0%
TTTGCAATTTCTCTGCATTG+AGG - chr8_4:39298592-39298611 Msa1326000:intron 35.0%
TTGCAATTTCTCTGCATTGA+GGG - chr8_4:39298593-39298612 Msa1326000:intron 35.0%
! ATATGATTCAAAGGAGTGTG+TGG + chr8_4:39298753-39298772 None:intergenic 35.0%
! ACAACTTTTGAGCAATAGGT+TGG - chr8_4:39298797-39298816 Msa1326000:intron 35.0%
TTGATTTAGGGATTGTTGGA+GGG + chr8_4:39298842-39298861 None:intergenic 35.0%
TTGTTCAACATTGTGGTGTT+CGG + chr8_4:39298886-39298905 None:intergenic 35.0%
CTCTTGATAAAGAGAGAATG+AGG - chr8_4:39298946-39298965 Msa1326000:intron 35.0%
AGAATGAGGAGAATGAGAAT+AGG - chr8_4:39298960-39298979 Msa1326000:CDS 35.0%
! AGAATAGGACTAGCAAACAA+AGG - chr8_4:39298975-39298994 Msa1326000:CDS 35.0%
!! CAAACAAAGGAAAAGTACCT+TGG - chr8_4:39298988-39299007 Msa1326000:CDS 35.0%
!! AGGAAAAGTACCTTGGAATA+AGG - chr8_4:39298995-39299014 Msa1326000:CDS 35.0%
!! GGAAAAGTACCTTGGAATAA+GGG - chr8_4:39298996-39299015 Msa1326000:CDS 35.0%
!!! TTAGGCAGGGTTTTAAATAG+AGG - chr8_4:39299259-39299278 Msa1326000:CDS 35.0%
!!! AGGGTTTTAAATAGAGGTTG+CGG - chr8_4:39299265-39299284 Msa1326000:CDS 35.0%
ATCTCAGAGTCCTAAAATCA+AGG + chr8_4:39299371-39299390 None:intergenic 35.0%
!!! AGGACTCTGAGATACTATTT+TGG - chr8_4:39299378-39299397 Msa1326000:CDS 35.0%
CAATTAGCATCTGACTAATG+AGG + chr8_4:39299420-39299439 None:intergenic 35.0%
CTCATTAGTCAGATGCTAAT+TGG - chr8_4:39299418-39299437 Msa1326000:CDS 35.0%
AATGACCAGAAGTGAATCAT+GGG + chr8_4:39299483-39299502 None:intergenic 35.0%
!!! TTTTCAGGTGAAGAAGAAGA+TGG - chr8_4:39299535-39299554 Msa1326000:CDS 35.0%
TTGTGTTTACCTATGACAAC+GGG + chr8_4:39299570-39299589 None:intergenic 35.0%
CTTGTGTTTACCTATGACAA+CGG + chr8_4:39299571-39299590 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+TGG - chr8_4:39299927-39299946 Msa1326000:intron 35.0%
ATATGATTTCATGCCTATCC+AGG + chr8_4:39299966-39299985 None:intergenic 35.0%
!! TTTTTGCTATCTAACCACTC+CGG + chr8_4:39300085-39300104 None:intergenic 35.0%
GATAGCAAAAACCTGATAGT+CGG - chr8_4:39299927-39299946 Msa1326000:intron 35.0%
GCTAGCAAAAACCTGATATT+CGG - chr8_4:39300432-39300451 Msa1326000:intron 35.0%
!! ATAGGCACTGATAGCATATT+AGG - chr8_4:39300473-39300492 Msa1326000:intron 35.0%
GTGCCTCTCTTTATAAACTT+TGG - chr8_4:39300548-39300567 Msa1326000:intron 35.0%
GACCCTCTCTTTATAAACTT+TGG - chr8_4:39300574-39300593 Msa1326000:intron 35.0%
TCTTTAATCTATGTGGGACT+TGG - chr8_4:39300607-39300626 Msa1326000:intron 35.0%
GTTCCTACTGTACATAATTC+TGG - chr8_4:39300650-39300669 Msa1326000:intron 35.0%
! TCCTCTAAGGGATATATTCA+TGG - chr8_4:39300831-39300850 Msa1326000:intron 35.0%
! CCTCTAAGGGATATATTCAT+GGG - chr8_4:39300832-39300851 Msa1326000:intron 35.0%
GCTTATTTGTCTAAACCTTG+AGG - chr8_4:39300854-39300873 Msa1326000:intron 35.0%
TAAGTTATAGTACGGAAGTG+TGG - chr8_4:39301281-39301300 Msa1326000:intron 35.0%
! TCTTTTCTTGATGCAATGGA+GGG - chr8_4:39301484-39301503 Msa1326000:intron 35.0%
!!! CTGATTTTTGAGTCTTCTCA+TGG + chr8_4:39301561-39301580 None:intergenic 35.0%
TGAGAAGACTCAAAAATCAG+TGG - chr8_4:39301561-39301580 Msa1326000:intron 35.0%
GAGAAGACTCAAAAATCAGT+GGG - chr8_4:39301562-39301581 Msa1326000:intron 35.0%
GAAGAGAGTTAAAATCTGTG+GGG + chr8_4:39301588-39301607 None:intergenic 35.0%
GAGAAGAGAGTTAAAATCTG+TGG + chr8_4:39301590-39301609 None:intergenic 35.0%
GAAGTTGAAGAGAGAGAAAT+AGG + chr8_4:39301656-39301675 None:intergenic 35.0%
CTTGTGTAAAAAACAGGGTA+AGG + chr8_4:39301773-39301792 None:intergenic 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - chr8_4:39301773-39301792 Msa1326000:intron 35.0%
CAACCTCTTGTGTAAAAAAC+AGG + chr8_4:39301779-39301798 None:intergenic 35.0%
!! TTACACAAGAGGTTGTTTCT+AGG - chr8_4:39301784-39301803 Msa1326000:intron 35.0%
!!! TTTTAGGTTGTCTTGCTCTT+TGG - chr8_4:39302363-39302382 Msa1326000:intron 35.0%
!! CTATGTTTTGTTCCCATAAG+AGG + chr8_4:39302542-39302561 None:intergenic 35.0%
!! TGGTCAAGTTGAGTTAGATT+GGG - chr8_4:39302587-39302606 Msa1326000:intron 35.0%
ATAGCCAAATCAGCAAAGAA+AGG - chr8_4:39302735-39302754 Msa1326000:intron 35.0%
TGGAGAAGAAGAACTTGATT+GGG - chr8_4:39302764-39302783 Msa1326000:intron 35.0%
TCAACCATACAAAAATGCAG+AGG - chr8_4:39302983-39303002 Msa1326000:CDS 35.0%
! TCTTCCTCTGCATTTTTGTA+TGG + chr8_4:39302990-39303009 None:intergenic 35.0%
GAATTCTTGAGTAACATCCT+CGG + chr8_4:39303021-39303040 None:intergenic 35.0%
!! GGCTCTAAATTAACTAAGGT+AGG - chr8_4:39303047-39303066 Msa1326000:CDS 35.0%
GATAGCCTGTATTTGGATTA+AGG - chr8_4:39303421-39303440 Msa1326000:intron 35.0%
ACAAGCTGCTAAAGTCATAA+AGG - chr8_4:39303798-39303817 Msa1326000:CDS 35.0%
CAAGCTGCTAAAGTCATAAA+GGG - chr8_4:39303799-39303818 Msa1326000:exon 35.0%
AAGCTGCTAAAGTCATAAAG+GGG - chr8_4:39303800-39303819 Msa1326000:exon 35.0%
ACTCCGGTTCTATCTATATG+TGG + chr8_4:39298112-39298131 None:intergenic 40.0%
TTGAAGTAGAGCATGTTGGT+TGG + chr8_4:39298193-39298212 None:intergenic 40.0%
! TGAGTTGAAGTAGAGCATGT+TGG + chr8_4:39298197-39298216 None:intergenic 40.0%
TTAAGATTGAAGGCTTGTCC+CGG - chr8_4:39298295-39298314 Msa1326000:CDS 40.0%
! AGTCACTTTAGACCCTGAAT+AGG - chr8_4:39298385-39298404 Msa1326000:intron 40.0%
GACGACTCATTTCCTATTCA+GGG + chr8_4:39298400-39298419 None:intergenic 40.0%
TGACGACTCATTTCCTATTC+AGG + chr8_4:39298401-39298420 None:intergenic 40.0%
GACTAACAGAGTGTACATTC+AGG + chr8_4:39298525-39298544 None:intergenic 40.0%
GACCTTGTTGGTCAATTTCA+GGG + chr8_4:39298556-39298575 None:intergenic 40.0%
AGACCTTGTTGGTCAATTTC+AGG + chr8_4:39298557-39298576 None:intergenic 40.0%
TCGCTGAATATAGACCTTGT+TGG + chr8_4:39298568-39298587 None:intergenic 40.0%
! GGCAACAACTTTTGAGCAAT+AGG - chr8_4:39298793-39298812 Msa1326000:intron 40.0%
TGATTTAGGGATTGTTGGAG+GGG + chr8_4:39298841-39298860 None:intergenic 40.0%
! GTTGATTTAGGGATTGTTGG+AGG + chr8_4:39298843-39298862 None:intergenic 40.0%
AAGTACCTTGGAATAAGGGA+AGG - chr8_4:39299000-39299019 Msa1326000:CDS 40.0%
TGTTTCCTTCCCTTATTCCA+AGG + chr8_4:39299008-39299027 None:intergenic 40.0%
TTCTCATCCTAATTCGCTCA+CGG + chr8_4:39299121-39299140 None:intergenic 40.0%
! GAGAACATTAGAGGCTTTGA+AGG - chr8_4:39299136-39299155 Msa1326000:CDS 40.0%
TCTTACTTGACTTCACCTTG+GGG + chr8_4:39299163-39299182 None:intergenic 40.0%
CTCTTACTTGACTTCACCTT+GGG + chr8_4:39299164-39299183 None:intergenic 40.0%
ACTCTTACTTGACTTCACCT+TGG + chr8_4:39299165-39299184 None:intergenic 40.0%
GTTAAATGTGGCCTCAATTG+CGG - chr8_4:39299297-39299316 Msa1326000:CDS 40.0%
GAATGACCAGAAGTGAATCA+TGG + chr8_4:39299484-39299503 None:intergenic 40.0%
TGTGTTTACCTATGACAACG+GGG + chr8_4:39299569-39299588 None:intergenic 40.0%
GATTACAATCTGTCTTGAGG+AGG + chr8_4:39299620-39299639 None:intergenic 40.0%
TATGATATCAGTGCCTATCC+AGG + chr8_4:39300133-39300152 None:intergenic 40.0%
TATGATATCAGTGCCTATCC+AGG + chr8_4:39300133-39300152 None:intergenic 40.0%
CGCTCCAAATGTTCAATTCT+GGG + chr8_4:39300393-39300412 None:intergenic 40.0%
ACGCTCCAAATGTTCAATTC+TGG + chr8_4:39300394-39300413 None:intergenic 40.0%
CCACCAGAATTATGTACAGT+AGG + chr8_4:39300656-39300675 None:intergenic 40.0%
CCTACTGTACATAATTCTGG+TGG - chr8_4:39300653-39300672 Msa1326000:intron 40.0%
CCCATGAATATATCCCTTAG+AGG + chr8_4:39300835-39300854 None:intergenic 40.0%
GAGGTTGAGAAGAGAGAAAA+AGG - chr8_4:39300993-39301012 Msa1326000:intron 40.0%
! GTCTTTTCTTGATGCAATGG+AGG - chr8_4:39301483-39301502 Msa1326000:intron 40.0%
! GATGCAATGGAGGGTATAAT+TGG - chr8_4:39301493-39301512 Msa1326000:intron 40.0%
TCTCATGGATGAGAAGAAAC+AGG + chr8_4:39301546-39301565 None:intergenic 40.0%
! ACACTTCTCTTGTTTGGTTG+TGG + chr8_4:39301622-39301641 None:intergenic 40.0%
! CAACCAAACAAGAGAAGTGT+AGG - chr8_4:39301622-39301641 Msa1326000:intron 40.0%
AGTCCTACACTTCTCTTGTT+TGG + chr8_4:39301628-39301647 None:intergenic 40.0%
GTGTTTGGTAGAGGAGAAAA+AGG + chr8_4:39301686-39301705 None:intergenic 40.0%
CTTTACACTGTGTTTGGTAG+AGG + chr8_4:39301695-39301714 None:intergenic 40.0%
ACAACTTTACCATTGCACCA+AGG - chr8_4:39301839-39301858 Msa1326000:intron 40.0%
AACACAGTGAAATGATCGAG+AGG + chr8_4:39302067-39302086 None:intergenic 40.0%
! TCGTCCAGTTGGTTTCAATT+AGG - chr8_4:39302301-39302320 Msa1326000:intron 40.0%
GATGGAGAATGAATTGCCAT+TGG + chr8_4:39302411-39302430 None:intergenic 40.0%
!! CAGGAAAGGTTGGTAAAAGA+TGG + chr8_4:39302429-39302448 None:intergenic 40.0%
!! TTATTCTCTGAGACGTGTCT+GGG - chr8_4:39302476-39302495 Msa1326000:intron 40.0%
! GGAGCAGTTTTTCCTCTTAT+GGG - chr8_4:39302527-39302546 Msa1326000:intron 40.0%
ATAGCAAATGCAGCCAAGAA+AGG - chr8_4:39302558-39302577 Msa1326000:intron 40.0%
!! GTGGTCAAGTTGAGTTAGAT+TGG - chr8_4:39302586-39302605 Msa1326000:intron 40.0%
GAGAAGCTGATGACAATTGT+TGG - chr8_4:39302678-39302697 Msa1326000:CDS 40.0%
CCAAATCAGCAAAGAAAGGA+GGG - chr8_4:39302739-39302758 Msa1326000:intron 40.0%
GTGGAGAAGAAGAACTTGAT+TGG - chr8_4:39302763-39302782 Msa1326000:intron 40.0%
ACAAAGCTCTTGACAGAGAA+TGG + chr8_4:39303344-39303363 None:intergenic 40.0%
AGAAGTGAAGTAGCTAGAGA+AGG - chr8_4:39303676-39303695 Msa1326000:intron 40.0%
AAGGGGAAACTCCATTGATA+TGG - chr8_4:39303817-39303836 Msa1326000:exon 40.0%
GAGCAGTTAGGAAGGTGAAA+AGG + chr8_4:39298167-39298186 None:intergenic 45.0%
GTTGGAAAGAGCAGTTAGGA+AGG + chr8_4:39298175-39298194 None:intergenic 45.0%
GTTGGTTGGAAAGAGCAGTT+AGG + chr8_4:39298179-39298198 None:intergenic 45.0%
GCACGGACACTTAAGATTGA+AGG - chr8_4:39298285-39298304 Msa1326000:CDS 45.0%
GTCCCTGAAATTGACCAACA+AGG - chr8_4:39298551-39298570 Msa1326000:intron 45.0%
CGTGAAAATGTCAGTGTGAG+AGG - chr8_4:39298717-39298736 Msa1326000:intron 45.0%
TCTCATCCTAATTCGCTCAC+GGG + chr8_4:39299120-39299139 None:intergenic 45.0%
CGGAGAATCGCAGTTAAATG+TGG - chr8_4:39299285-39299304 Msa1326000:CDS 45.0%
TGTTCCCAAAACCGCAATTG+AGG + chr8_4:39299311-39299330 None:intergenic 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39299892-39299911 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39299893-39299912 None:intergenic 45.0%
!! CACTACAAGTTGGTTGCGTA+CGG + chr8_4:39300016-39300035 None:intergenic 45.0%
CAACCAACTTGTAGTGTGAC+CGG - chr8_4:39300020-39300039 Msa1326000:intron 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39299892-39299911 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39299893-39299912 None:intergenic 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39299896-39299915 Msa1326000:intron 45.0%
TGGTTGCGTAAGGTTGAGTT+AGG + chr8_4:39300174-39300193 None:intergenic 45.0%
CAAATGTTCAATCCTGGGTG+AGG + chr8_4:39300220-39300239 None:intergenic 45.0%
CTCACCCAGGATTGAACATT+TGG - chr8_4:39300218-39300237 Msa1326000:intron 45.0%
CGCTCCAAATGTTCAATCCT+GGG + chr8_4:39299892-39299911 None:intergenic 45.0%
ACGCTCCAAATGTTCAATCC+TGG + chr8_4:39299893-39299912 None:intergenic 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39299896-39299915 Msa1326000:intron 45.0%
!! TTTTTGCTATCGAGCCACTC+CGG + chr8_4:39300251-39300270 None:intergenic 45.0%
TCGTTGCGTAAGGTTGAGTT+AGG + chr8_4:39300340-39300359 None:intergenic 45.0%
AATGTTCAATTCTGGGCGTG+AGG + chr8_4:39300386-39300405 None:intergenic 45.0%
CACGCCCAGAATTGAACATT+TGG - chr8_4:39300386-39300405 Msa1326000:intron 45.0%
! TTGAACATTTGGAGCGTGAC+CGG - chr8_4:39299896-39299915 Msa1326000:intron 45.0%
TATGCTATCAGTGCCTATCC+AGG + chr8_4:39300471-39300490 None:intergenic 45.0%
!! CCTTACAAGTTGGTTGCGTA+AGG + chr8_4:39300522-39300541 None:intergenic 45.0%
CCTTACGCAACCAACTTGTA+AGG - chr8_4:39300181-39300200 Msa1326000:intron 45.0%
CAACCAACTTGTAAGGTCAG+CGG - chr8_4:39300526-39300545 Msa1326000:intron 45.0%
! TAATTCTGGTGGAAGAGCAC+AGG - chr8_4:39300664-39300683 Msa1326000:intron 45.0%
GTGAGAAGTAGGTAAGAGAG+AGG - chr8_4:39300974-39300993 Msa1326000:intron 45.0%
GTGCACTTGTGCTATCATGT+AGG + chr8_4:39301435-39301454 None:intergenic 45.0%
GTTGTTGTCACGTGACTGAA+AGG + chr8_4:39301824-39301843 None:intergenic 45.0%
AGACATAAGGGTAACAGCCT+TGG + chr8_4:39301859-39301878 None:intergenic 45.0%
ACAGTGAAATGATCGAGAGG+TGG + chr8_4:39302064-39302083 None:intergenic 45.0%
CTAGTATTGTAGTTGCAGCG+AGG - chr8_4:39302272-39302291 Msa1326000:intron 45.0%
TGATCTGATCACTGCAGGAA+AGG + chr8_4:39302443-39302462 None:intergenic 45.0%
TTCCTGCAGTGATCAGATCA+AGG - chr8_4:39302443-39302462 Msa1326000:CDS 45.0%
TTCCTTGATCTGATCACTGC+AGG + chr8_4:39302448-39302467 None:intergenic 45.0%
!! GTTATTCTCTGAGACGTGTC+TGG - chr8_4:39302475-39302494 Msa1326000:intron 45.0%
! GGGAGCAGTTTTTCCTCTTA+TGG - chr8_4:39302526-39302545 Msa1326000:intron 45.0%
CAAATGCAGCCAAGAAAGGA+GGG - chr8_4:39302562-39302581 Msa1326000:intron 45.0%
TTTCCTCTGCCTGCAGAATT+CGG + chr8_4:39302650-39302669 None:intergenic 45.0%
AATTCTGCAGGCAGAGGAAA+AGG - chr8_4:39302650-39302669 Msa1326000:intron 45.0%
GCCAAATCAGCAAAGAAAGG+AGG - chr8_4:39302738-39302757 Msa1326000:intron 45.0%
! CCCTCCTTTCTTTGCTGATT+TGG + chr8_4:39302742-39302761 None:intergenic 45.0%
GCTTCAGCGTATTACAGAGA+AGG - chr8_4:39302830-39302849 Msa1326000:intron 45.0%
GCGTATTACAGAGAAGGCAA+AGG - chr8_4:39302836-39302855 Msa1326000:intron 45.0%
AGAGAAAAGATCTCCGAGAG+AGG - chr8_4:39302934-39302953 Msa1326000:intron 45.0%
!!! CTCTAGCTTTTGTCCTCTCT+CGG + chr8_4:39302950-39302969 None:intergenic 45.0%
!!! TACATAATATATTTTTTTTA+AGG + chr8_4:39299595-39299614 None:intergenic 5.0%
!!! AAATTATTTTTTTCATAAAA+GGG + chr8_4:39301180-39301199 None:intergenic 5.0%
!!! TAAATTATTTTTTTCATAAA+AGG + chr8_4:39301181-39301200 None:intergenic 5.0%
!!! TTTTAATAAAAATAAAAACT+AGG - chr8_4:39303584-39303603 Msa1326000:intron 5.0%
!! TTTAATAAAAATAAAAACTA+GGG - chr8_4:39303585-39303604 Msa1326000:intron 5.0%
ATAGATAGAACCGGAGTCGC+TGG - chr8_4:39298115-39298134 Msa1326000:intron 50.0%
TCAGTGTCGTGTGTCGTGTA+TGG - chr8_4:39298660-39298679 Msa1326000:intron 50.0%
AAGGGAAGGAAACACACTGC+AGG - chr8_4:39299014-39299033 Msa1326000:CDS 50.0%
! TGTGGCCTCAATTGCGGTTT+TGG - chr8_4:39299303-39299322 Msa1326000:CDS 50.0%
! GTGGCCTCAATTGCGGTTTT+GGG - chr8_4:39299304-39299323 Msa1326000:CDS 50.0%
CCAGAAGTGAATCATGGGAC+AGG + chr8_4:39299478-39299497 None:intergenic 50.0%
CCTGTCCCATGATTCACTTC+TGG - chr8_4:39299475-39299494 Msa1326000:CDS 50.0%
CTGAACATCCCCGTTGTCAT+AGG - chr8_4:39299558-39299577 Msa1326000:intron 50.0%
ATGTTCAATCCTGGGCGTGA+GGG + chr8_4:39299884-39299903 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG + chr8_4:39299885-39299904 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG - chr8_4:39299885-39299904 Msa1326000:intron 50.0%
! CATTTGGAGCGTGACAAGAG+TGG - chr8_4:39299901-39299920 Msa1326000:intron 50.0%
TGGTTGCGTACGGTTGAGTT+AGG + chr8_4:39300006-39300025 None:intergenic 50.0%
AGTCCGGTCACACTACAAGT+TGG + chr8_4:39300026-39300045 None:intergenic 50.0%
AATGTTCAATCCTGGGCGTG+AGG + chr8_4:39299885-39299904 None:intergenic 50.0%
CACGCCCAGGATTGAACATT+TGG - chr8_4:39299885-39299904 Msa1326000:intron 50.0%
CCTGATAGTCTGTGACCCAA+CGG - chr8_4:39300105-39300124 Msa1326000:intron 50.0%
CTGATAGTCTGTGACCCAAC+GGG - chr8_4:39300106-39300125 Msa1326000:intron 50.0%
!! CGCTACAAGTTGGTTGCGTA+AGG + chr8_4:39300184-39300203 None:intergenic 50.0%
CAACCAACTTGTAGCGTGAC+CGG - chr8_4:39300188-39300207 Msa1326000:intron 50.0%
CGCTTCATGTTCGTTGCGTA+AGG + chr8_4:39300350-39300369 None:intergenic 50.0%
CAACGAACATGAAGCGTGAC+CGG - chr8_4:39300354-39300373 Msa1326000:intron 50.0%
! CCTGATATTCGGTGACCCAA+CGG - chr8_4:39300443-39300462 Msa1326000:intron 50.0%
! CTGATATTCGGTGACCCAAC+GGG - chr8_4:39300444-39300463 Msa1326000:intron 50.0%
AAACACACCCTTAGTGCACC+AGG + chr8_4:39300932-39300951 None:intergenic 50.0%
! TGGTGCACTAAGGGTGTGTT+TGG - chr8_4:39300931-39300950 Msa1326000:intron 50.0%
GCGGGACTTTACACTGTGTT+TGG + chr8_4:39301701-39301720 None:intergenic 50.0%
TGTAAAGTCCCGCATACGCA+AGG - chr8_4:39301708-39301727 Msa1326000:intron 50.0%
CAATTGATGAGACCCCTTCC+CGG + chr8_4:39301735-39301754 None:intergenic 50.0%
TCACGTGACTGAAAGGTCAC+GGG + chr8_4:39301817-39301836 None:intergenic 50.0%
GTCACGTGACTGAAAGGTCA+CGG + chr8_4:39301818-39301837 None:intergenic 50.0%
!! CGAGGTATTGTTCGTCCAGT+TGG - chr8_4:39302290-39302309 Msa1326000:intron 50.0%
CTGATCACTGCAGGAAAGGT+TGG + chr8_4:39302439-39302458 None:intergenic 50.0%
AAGAGCGACTGAAGTCACAG+CGG - chr8_4:39302499-39302518 Msa1326000:intron 50.0%
GCAAATGCAGCCAAGAAAGG+AGG - chr8_4:39302561-39302580 Msa1326000:intron 50.0%
TTGACCACTCCCTCCTTTCT+TGG + chr8_4:39302574-39302593 None:intergenic 50.0%
TGAGTTCCACCGAATTCTGC+AGG - chr8_4:39302638-39302657 Msa1326000:intron 50.0%
TCAGCAAAGAAAGGAGGGAG+TGG - chr8_4:39302744-39302763 Msa1326000:intron 50.0%
GAAGGCAAAGGCCAAAGAGA+TGG - chr8_4:39302848-39302867 Msa1326000:CDS 50.0%
AGAGGAAGACAAATGTGCCG+AGG - chr8_4:39303001-39303020 Msa1326000:CDS 50.0%
AACTCAGACACCAGCGACTC+CGG + chr8_4:39298128-39298147 None:intergenic 55.0%
TTGAAGGCTTGTCCCGGTGT+CGG - chr8_4:39298301-39298320 Msa1326000:CDS 55.0%
GACGACAATTGTCCGACACC+GGG + chr8_4:39298316-39298335 None:intergenic 55.0%
GGACGACAATTGTCCGACAC+CGG + chr8_4:39298317-39298336 None:intergenic 55.0%
CAGAGACCCGTGAGCGAATT+AGG - chr8_4:39299111-39299130 Msa1326000:CDS 55.0%
!! AGAGGCTTTGAAGGACCCCA+AGG - chr8_4:39299145-39299164 Msa1326000:CDS 55.0%
CCTGATAGTTGGCGACCCAA+CGG - chr8_4:39299938-39299957 Msa1326000:intron 55.0%
CTGATAGTTGGCGACCCAAC+GGG - chr8_4:39299939-39299958 Msa1326000:intron 55.0%
ATGCCTATCCAGGACCCGTT+GGG + chr8_4:39299956-39299975 None:intergenic 55.0%
CCGTTGGGTCACAGACTATC+AGG + chr8_4:39300108-39300127 None:intergenic 55.0%
AGTCCGGTCACGCTACAAGT+TGG + chr8_4:39300194-39300213 None:intergenic 55.0%
ATCCTGGGTGAGGTTGAGTC+CGG + chr8_4:39300210-39300229 None:intergenic 55.0%
CCTGATAGTCGGTGACCCAA+CGG - chr8_4:39300271-39300290 Msa1326000:intron 55.0%
CTGATAGTCGGTGACCCAAC+GGG - chr8_4:39300272-39300291 Msa1326000:intron 55.0%
TGCTAGCTATCGAGCCACTC+CGG + chr8_4:39300419-39300438 None:intergenic 55.0%
CCGTTGGGTCACCGAATATC+AGG + chr8_4:39300446-39300465 None:intergenic 55.0%
GCACCGCTGACCTTACAAGT+TGG + chr8_4:39300532-39300551 None:intergenic 55.0%
AAGGGTTGCCTGGTGCACTA+AGG - chr8_4:39300921-39300940 Msa1326000:intron 55.0%
AGGGTTGCCTGGTGCACTAA+GGG - chr8_4:39300922-39300941 Msa1326000:intron 55.0%
CGGGAAGGGGTCTCATCAAT+TGG - chr8_4:39301733-39301752 Msa1326000:intron 55.0%
! GGGTAACAGCCTTGGTGCAA+TGG + chr8_4:39301851-39301870 None:intergenic 55.0%
AGAGCGACTGAAGTCACAGC+GGG - chr8_4:39302500-39302519 Msa1326000:intron 55.0%
CGCTCACGGGTCTCTGCAAT+TGG + chr8_4:39299107-39299126 None:intergenic 60.0%
TCAATCCTGGGCGTGAGGGT+AGG + chr8_4:39299880-39299899 None:intergenic 60.0%
CCGTTGGGTCGCCAACTATC+AGG + chr8_4:39299941-39299960 None:intergenic 60.0%
CATGCCTATCCAGGACCCGT+TGG + chr8_4:39299957-39299976 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39300068-39300087 Msa1326000:intron 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39300117-39300136 Msa1326000:intron 60.0%
GTGCCTATCCAGGACCCGTT+GGG + chr8_4:39300123-39300142 None:intergenic 60.0%
AGTGCCTATCCAGGACCCGT+TGG + chr8_4:39300124-39300143 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39300068-39300087 Msa1326000:intron 60.0%
! CCGTTGGGTCACCGACTATC+AGG + chr8_4:39300274-39300293 None:intergenic 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39300117-39300136 Msa1326000:intron 60.0%
GTGCCTATCCAGGACCCGTT+GGG + chr8_4:39300123-39300142 None:intergenic 60.0%
AGTGCCTATCCAGGACCCGT+TGG + chr8_4:39300124-39300143 None:intergenic 60.0%
TCTGGGCGTGAGGTTGAGTC+CGG + chr8_4:39300376-39300395 None:intergenic 60.0%
! CATTTGGAGCGTGACCGGAG+TGG - chr8_4:39300068-39300087 Msa1326000:intron 60.0%
TGACCCAACGGGTCCTGGAT+AGG - chr8_4:39300117-39300136 Msa1326000:intron 60.0%
GTGCCTATCCAGGACCCGTT+GGG + chr8_4:39300123-39300142 None:intergenic 60.0%
AGTGCCTATCCAGGACCCGT+TGG + chr8_4:39300124-39300143 None:intergenic 60.0%
AGTCCCGCATACGCAAGGTC+CGG - chr8_4:39301713-39301732 Msa1326000:intron 60.0%
TTCCCGGACCTTGCGTATGC+GGG + chr8_4:39301719-39301738 None:intergenic 60.0%
CTTCCCGGACCTTGCGTATG+CGG + chr8_4:39301720-39301739 None:intergenic 60.0%
GCATACGCAAGGTCCGGGAA+GGG - chr8_4:39301719-39301738 Msa1326000:intron 60.0%
CATACGCAAGGTCCGGGAAG+GGG - chr8_4:39301720-39301739 Msa1326000:intron 60.0%
GACTGAAGTCACAGCGGGCA+GGG - chr8_4:39302505-39302524 Msa1326000:intron 60.0%
ACTGAAGTCACAGCGGGCAG+GGG - chr8_4:39302506-39302525 Msa1326000:intron 60.0%
GCAGCCAAGAAAGGAGGGAG+TGG - chr8_4:39302567-39302586 Msa1326000:intron 60.0%
CCTCTGCCTGCAGAATTCGG+TGG + chr8_4:39302647-39302666 None:intergenic 60.0%
CCACCGAATTCTGCAGGCAG+AGG - chr8_4:39302644-39302663 Msa1326000:intron 60.0%
CGACCCAACGGGTCCTGGAT+AGG - chr8_4:39299950-39299969 Msa1326000:intron 65.0%
CCTGGGCGTGAGGTTGAGTC+CGG + chr8_4:39300042-39300061 None:intergenic 65.0%
GTCTGTGACCCAACGGGTCC+TGG - chr8_4:39300112-39300131 Msa1326000:intron 65.0%
GACCGGACTCAACCTCACCC+AGG - chr8_4:39300205-39300224 Msa1326000:intron 65.0%
TTCGGTGACCCAACGGGTCC+TGG - chr8_4:39300450-39300469 Msa1326000:intron 65.0%
GTCCCGCATACGCAAGGTCC+GGG - chr8_4:39301714-39301733 Msa1326000:intron 65.0%
CGCATACGCAAGGTCCGGGA+AGG - chr8_4:39301718-39301737 Msa1326000:intron 65.0%
CGACTGAAGTCACAGCGGGC+AGG - chr8_4:39302504-39302523 Msa1326000:intron 65.0%
TTGGGCCTACCCTCACGCCC+AGG - chr8_4:39299872-39299891 Msa1326000:intron 70.0%
GTTGGCGACCCAACGGGTCC+TGG - chr8_4:39299945-39299964 Msa1326000:intron 70.0%
CCGGACTCAACCTCACGCCC+AGG - chr8_4:39300039-39300058 Msa1326000:intron 70.0%
GTCGGTGACCCAACGGGTCC+TGG - chr8_4:39300278-39300297 Msa1326000:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 39298102 39303914 39298102 ID=Msa1326000;Name=Msa1326000
chr8_4 mRNA 39298102 39303914 39298102 ID=Msa1326000-mRNA-1;Parent=Msa1326000;Name=Msa1326000-mRNA-1;_AED=0.22;_eAED=0.22;_QI=97|0.55|0.4|1|0.33|0.1|10|0|417
chr8_4 exon 39298102 39298104 39298102 ID=Msa1326000-mRNA-1:exon:11846;Parent=Msa1326000-mRNA-1
chr8_4 exon 39298206 39298361 39298206 ID=Msa1326000-mRNA-1:exon:11845;Parent=Msa1326000-mRNA-1
chr8_4 exon 39298952 39299169 39298952 ID=Msa1326000-mRNA-1:exon:11844;Parent=Msa1326000-mRNA-1
chr8_4 exon 39299179 39299402 39299179 ID=Msa1326000-mRNA-1:exon:11843;Parent=Msa1326000-mRNA-1
chr8_4 exon 39299418 39299564 39299418 ID=Msa1326000-mRNA-1:exon:11842;Parent=Msa1326000-mRNA-1
chr8_4 exon 39302437 39302474 39302437 ID=Msa1326000-mRNA-1:exon:11841;Parent=Msa1326000-mRNA-1
chr8_4 exon 39302677 39302753 39302677 ID=Msa1326000-mRNA-1:exon:11840;Parent=Msa1326000-mRNA-1
chr8_4 exon 39302840 39302902 39302840 ID=Msa1326000-mRNA-1:exon:11839;Parent=Msa1326000-mRNA-1
chr8_4 exon 39302981 39303285 39302981 ID=Msa1326000-mRNA-1:exon:11838;Parent=Msa1326000-mRNA-1
chr8_4 exon 39303798 39303914 39303798 ID=Msa1326000-mRNA-1:exon:11837;Parent=Msa1326000-mRNA-1
chr8_4 five_prime_UTR 39303818 39303914 39303818 ID=Msa1326000-mRNA-1:five_prime_utr;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39303798 39303817 39303798 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39302981 39303285 39302981 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39302840 39302902 39302840 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39302677 39302753 39302677 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39302437 39302474 39302437 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39299418 39299564 39299418 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39299179 39299402 39299179 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39298952 39299169 39298952 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39298206 39298361 39298206 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
chr8_4 CDS 39298102 39298104 39298102 ID=Msa1326000-mRNA-1:cds;Parent=Msa1326000-mRNA-1
Gene Sequence

>Msa1326000

ATGCTCTACTTCAACTCAATTGTGAGAGGAATGTCTGTTCCACACACTCCTTTGAATCATATTCCCAACAATTATTATTCAAGGCAACAACTTTTGAGCAATAGGTTGGATTGCGCTTGTACATTTTCCCCTCCAACAATCCCTAAATCAACATTGTCTTTTTCTGTTGATGCCGAACACCACAATGTTGAACAAGATTCTTTTGATTATTTGAACAATGTCGACTCTCTAAAATCTCTTGATAAAGAGAGAATGAGGAGAATGAGAATAGGACTAGCAAACAAAGGAAAAGTACCTTGGAATAAGGGAAGGAAACACACTGCAGAGACCCGTGAGCGAATTAGGATGAGAACATTAGAGGCTTTGAAGGACCCCAAGGTGAAGTCAAGCAGGGTTTTAAATAGAGGTTGCGGAGAATCGCAGTTAAATGTGGCCTCAATTGCGGTTTTGGGAACATTAAAAACAGTGAAGAAGAAGATGGCTGAACATCCCCGTTGTCATAGTGATCAGATCAAGGAAAAGATAAGTTATTCTCTGAGACGTGTCTGGGAAGAGCGACTGAAGTCACAGCGGGCAGGGGAGCAGTTTTTCCTCTTATGGGAACAAAACATAGCAAATGCAGCCAAGAAAGGAGGGAGTGGTCAAGTTGACTATGATAAGATAAAAGAACAACTTGAGTTCCACCGAATTCTGCAGGCAGAGGAAAAGGAAAAAGAGAAGCTGATGACAATTGTTGGAACAAATAAATTATTTCATTTGTGGACGGAAATCATAGCCAAATCAGCAAAGAAAGGAGGGAGTGGAGAAGAAGAACTTGATTGGGATAGCTACGACAAGATAAAAGAAGAAATGATTCTTCTCAATCAGCTTCAGCAGAAGGCAAAGGCCAAAGAGATGGCAAAAATAAAAGCGGAGAAAGAAGCACAGATAAAAGCGATAAAAAAGGTAATGCTCACTCAAAAGAGAAAAGATCTCCGAGAGAGGACAAAAGCTAGAGAGAATATAAAGAATCAACCATACAAAAATGCAGAGGAAGACAAATGTGCCGAGGATGTTACTCAAGAATTCAAACTTGGCTCTAAATTAACTAAGAATCATGTAAATAACATCATCAGAAGTGAAGTAGCTAGAGAAGGAGACGTTATTTATTCCAATTTTCCAACTCACAGTAAATTGGATTTAGAGCTTATCAGAAGAGAGAAAATGCAGAAAAAAGTATCACTTGCAGATCAGATACAAGCTGCTAAAAAT

Protein sequence

>Msa1326000

MLYFNSIVRGMSVPHTPLNHIPNNYYSRQQLLSNRLDCACTFSPPTIPKSTLSFSVDAEHHNVEQDSFDYLNNVDSLKSLDKERMRRMRIGLANKGKVPWNKGRKHTAETRERIRMRTLEALKDPKVKSSRVLNRGCGESQLNVASIAVLGTLKTVKKKMAEHPRCHSDQIKEKISYSLRRVWEERLKSQRAGEQFFLLWEQNIANAAKKGGSGQVDYDKIKEQLEFHRILQAEEKEKEKLMTIVGTNKLFHLWTEIIAKSAKKGGSGEEELDWDSYDKIKEEMILLNQLQQKAKAKEMAKIKAEKEAQIKAIKKVMLTQKRKDLRERTKARENIKNQPYKNAEEDKCAEDVTQEFKLGSKLTKNHVNNIIRSEVAREGDVIYSNFPTHSKLDLELIRREKMQKKVSLADQIQAAKN