Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320680 | AVR48487.1 | 95.364 | 151 | 0 | 1 | 3 | 153 | 64 | 207 | 7.76e-95 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320680 | sp|O23429|VA724_ARATH | 84.892 | 139 | 14 | 1 | 3 | 141 | 65 | 196 | 7.51e-82 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007970 | Msa0320680 | 0.801601 | 8.339032e-49 | -8.615850e-47 |
| Msa0014570 | Msa0320680 | 0.833826 | 4.267658e-56 | -8.615850e-47 |
| Msa0046760 | Msa0320680 | 0.825440 | 4.681337e-54 | -8.615850e-47 |
| Msa0079110 | Msa0320680 | 0.801016 | 1.098501e-48 | -8.615850e-47 |
| Msa0108390 | Msa0320680 | 0.807523 | 4.849641e-50 | -8.615850e-47 |
| Msa0154440 | Msa0320680 | 0.809706 | 1.657398e-50 | -8.615850e-47 |
| Msa0187030 | Msa0320680 | 0.803228 | 3.853871e-49 | -8.615850e-47 |
| Msa0219430 | Msa0320680 | 0.828689 | 7.820298e-55 | -8.615850e-47 |
| Msa0253290 | Msa0320680 | 0.828007 | 1.141922e-54 | -8.615850e-47 |
| Msa0281430 | Msa0320680 | 0.873080 | 1.939987e-67 | -8.615850e-47 |
| Msa0292120 | Msa0320680 | 0.816832 | 4.511627e-52 | -8.615850e-47 |
| Msa0320680 | Msa0342010 | 0.823917 | 1.069834e-53 | -8.615850e-47 |
| Msa0320680 | Msa0428050 | 0.802069 | 6.683230e-49 | -8.615850e-47 |
| Msa0320680 | Msa0455740 | 0.803067 | 4.161275e-49 | -8.615850e-47 |
| Msa0320680 | Msa0479200 | 0.808638 | 2.807368e-50 | -8.615850e-47 |
| Msa0320680 | Msa0574390 | 0.802598 | 5.198954e-49 | -8.615850e-47 |
| Msa0320680 | Msa0576680 | 0.809609 | 1.738478e-50 | -8.615850e-47 |
| Msa0320680 | Msa0579660 | 0.811561 | 6.584396e-51 | -8.615850e-47 |
| Msa0320680 | Msa0620620 | 0.803259 | 3.797136e-49 | -8.615850e-47 |
| Msa0320680 | Msa0636020 | 0.804124 | 2.510891e-49 | -8.615850e-47 |
| Msa0320680 | Msa0800700 | 0.820165 | 7.922737e-53 | -8.615850e-47 |
| Msa0320680 | Msa0826760 | 0.809371 | 1.956268e-50 | -8.615850e-47 |
| Msa0320680 | Msa1022820 | 0.807983 | 3.871400e-50 | -8.615850e-47 |
| Msa0320680 | Msa1034500 | 0.811567 | 6.563301e-51 | -8.615850e-47 |
| Msa0320680 | Msa1038080 | 0.810108 | 1.357631e-50 | -8.615850e-47 |
| Msa0320680 | Msa1298370 | 0.804002 | 2.662325e-49 | -8.615850e-47 |
| Msa0320680 | Msa1445390 | -0.801910 | 7.204430e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320680 | MtrunA17_Chr2g0296021 | 87.879 | 165 | 10 | 2 | 3 | 167 | 64 | 218 | 9.48e-99 | 284 |
| Msa0320680 | MtrunA17_Chr4g0010271 | 70.504 | 139 | 34 | 1 | 3 | 141 | 64 | 195 | 5.31e-68 | 206 |
| Msa0320680 | MtrunA17_Chr1g0169861 | 62.252 | 151 | 50 | 1 | 3 | 153 | 114 | 257 | 1.64e-64 | 199 |
| Msa0320680 | MtrunA17_Chr4g0043521 | 63.768 | 138 | 43 | 1 | 4 | 141 | 67 | 197 | 7.35e-61 | 188 |
| Msa0320680 | MtrunA17_Chr7g0237561 | 63.768 | 138 | 43 | 1 | 4 | 141 | 65 | 195 | 6.85e-60 | 185 |
| Msa0320680 | MtrunA17_Chr2g0291651 | 60.432 | 139 | 48 | 1 | 3 | 141 | 68 | 199 | 8.77e-58 | 180 |
| Msa0320680 | MtrunA17_Chr7g0237521 | 59.712 | 139 | 49 | 1 | 3 | 141 | 64 | 195 | 1.67e-56 | 176 |
| Msa0320680 | MtrunA17_Chr1g0169851 | 56.164 | 146 | 42 | 2 | 3 | 133 | 15 | 153 | 2.17e-51 | 161 |
| Msa0320680 | MtrunA17_Chr4g0010211 | 64.103 | 117 | 35 | 1 | 1 | 117 | 1 | 110 | 6.06e-49 | 154 |
| Msa0320680 | MtrunA17_Chr1g0210521 | 44.379 | 169 | 68 | 3 | 4 | 153 | 65 | 226 | 2.78e-43 | 144 |
| Msa0320680 | MtrunA17_Chr5g0441741 | 31.852 | 135 | 83 | 3 | 6 | 140 | 65 | 190 | 5.25e-20 | 83.2 |
| Msa0320680 | MtrunA17_Chr4g0026121 | 28.467 | 137 | 89 | 3 | 4 | 140 | 63 | 190 | 1.96e-18 | 79.0 |
| Msa0320680 | MtrunA17_Chr4g0064371 | 26.490 | 151 | 99 | 4 | 6 | 153 | 69 | 210 | 8.16e-18 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0320680 | AT4G15780.1 | 82.787 | 122 | 14 | 1 | 3 | 124 | 65 | 179 | 2.21e-68 | 206 |
| Msa0320680 | AT2G33120.2 | 66.906 | 139 | 39 | 1 | 3 | 141 | 72 | 203 | 3.48e-63 | 194 |
| Msa0320680 | AT2G33120.1 | 67.391 | 138 | 38 | 1 | 4 | 141 | 65 | 195 | 4.02e-63 | 194 |
| Msa0320680 | AT1G04760.2 | 64.336 | 143 | 44 | 1 | 4 | 146 | 65 | 200 | 8.27e-63 | 193 |
| Msa0320680 | AT1G04760.1 | 64.336 | 143 | 44 | 1 | 4 | 146 | 65 | 200 | 8.27e-63 | 193 |
| Msa0320680 | AT2G32670.1 | 65.468 | 139 | 41 | 1 | 3 | 141 | 129 | 260 | 4.14e-62 | 193 |
| Msa0320680 | AT1G04750.1 | 65.942 | 138 | 40 | 1 | 4 | 141 | 65 | 195 | 7.41e-61 | 188 |
| Msa0320680 | AT1G04750.2 | 66.935 | 124 | 34 | 1 | 18 | 141 | 1 | 117 | 8.27e-55 | 170 |
| Msa0320680 | AT1G04750.4 | 66.935 | 124 | 34 | 1 | 18 | 141 | 1 | 117 | 8.27e-55 | 170 |
| Msa0320680 | AT1G04750.3 | 66.935 | 124 | 34 | 1 | 18 | 141 | 1 | 117 | 8.27e-55 | 170 |
| Msa0320680 | AT3G54300.3 | 44.379 | 169 | 68 | 3 | 4 | 153 | 65 | 226 | 2.31e-43 | 144 |
| Msa0320680 | AT3G54300.2 | 44.379 | 169 | 68 | 3 | 4 | 153 | 65 | 226 | 2.31e-43 | 144 |
| Msa0320680 | AT3G54300.1 | 44.379 | 169 | 68 | 3 | 4 | 153 | 65 | 226 | 2.31e-43 | 144 |
| Msa0320680 | AT2G33110.1 | 53.623 | 138 | 53 | 2 | 4 | 141 | 65 | 191 | 1.24e-42 | 142 |
| Msa0320680 | AT2G33110.2 | 59.596 | 99 | 33 | 1 | 4 | 102 | 65 | 156 | 5.89e-34 | 119 |
| Msa0320680 | AT2G33120.3 | 74.194 | 62 | 16 | 0 | 80 | 141 | 52 | 113 | 6.30e-28 | 102 |
| Msa0320680 | AT5G11150.2 | 31.973 | 147 | 91 | 3 | 6 | 152 | 66 | 203 | 7.06e-23 | 91.3 |
| Msa0320680 | AT5G11150.1 | 31.973 | 147 | 91 | 3 | 6 | 152 | 66 | 203 | 1.03e-22 | 90.9 |
| Msa0320680 | AT5G22360.1 | 28.859 | 149 | 97 | 3 | 4 | 152 | 64 | 203 | 7.91e-22 | 88.6 |
| Msa0320680 | AT4G32150.1 | 31.343 | 134 | 83 | 3 | 6 | 139 | 65 | 189 | 1.94e-20 | 84.7 |
| Msa0320680 | AT3G24890.2 | 41.748 | 103 | 52 | 3 | 50 | 146 | 7 | 107 | 2.47e-19 | 79.3 |
| Msa0320680 | AT2G25340.1 | 28.358 | 134 | 87 | 3 | 6 | 139 | 65 | 189 | 8.11e-16 | 72.4 |
Find 21 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTGAACAAGGAATT+TGG | 0.190475 | 2_4:+21350209 | Msa0320680:CDS |
| TCAGAACATGAAAATTAAAT+TGG | 0.225912 | 2_4:+21351471 | Msa0320680:CDS |
| AAAATTAAATTGGTTGTTCT+TGG | 0.225914 | 2_4:+21351481 | Msa0320680:CDS |
| AAATTCCTTGTTCAGACTTT+TGG | 0.253010 | 2_4:-21350207 | None:intergenic |
| CTGCTTGCTAACAGATTCTT+TGG | 0.273100 | 2_4:-21350105 | None:intergenic |
| TTCATGTGCTCTTTCATAAT+CGG | 0.353938 | 2_4:-21350326 | None:intergenic |
| GCCGACTTTAAGAAAAGATA+TGG | 0.410544 | 2_4:+21350158 | Msa0320680:CDS |
| AAAGTCTGAACAAGGAATTT+GGG | 0.465281 | 2_4:+21350210 | Msa0320680:CDS |
| AGTCGGCTTTGACACGTTCA+AGG | 0.477338 | 2_4:-21350142 | None:intergenic |
| CACAGGTCCGTCGGAAGATG+TGG | 0.530944 | 2_4:+21351446 | Msa0320680:CDS |
| TGAAAAGCTATTAAAAGTGA+AGG | 0.564756 | 2_4:+21350376 | Msa0320680:CDS |
| GACACGTTCAAGGAAAGCAA+TGG | 0.576248 | 2_4:-21350132 | None:intergenic |
| GCTCAAGATTTCAGAAAGCA+AGG | 0.582915 | 2_4:+21351421 | Msa0320680:CDS |
| TTTAAGAAAAGATATGGTGG+TGG | 0.589931 | 2_4:+21350164 | Msa0320680:CDS |
| TTTCAGAAAGCAAGGAACAC+AGG | 0.591739 | 2_4:+21351429 | Msa0320680:CDS |
| AGCAAGGAACACAGGTCCGT+CGG | 0.592470 | 2_4:+21351437 | Msa0320680:CDS |
| TATTGCCAAAAGTCTGAACA+AGG | 0.635316 | 2_4:+21350202 | Msa0320680:CDS |
| TAGGGTGCAATAGAGATGGA+TGG | 0.644976 | 2_4:+21349327 | None:intergenic |
| CATGTTAGAAAATATAGACA+AGG | 0.648118 | 2_4:+21350424 | Msa0320680:CDS |
| GACTTTAAGAAAAGATATGG+TGG | 0.664798 | 2_4:+21350161 | Msa0320680:CDS |
| TCTGATACCACATCTTCCGA+CGG | 0.674197 | 2_4:-21351453 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATAAAAAGTTTAATAATA+TGG | + | chr2_4:21350288-21350307 | Msa0320680:intron | 10.0% |
| !! | ATACAAAAATTCTATTATTT+AGG | + | chr2_4:21351993-21352012 | Msa0320680:intron | 10.0% |
| !! | CAAATATAGACAATAATTAA+TGG | - | chr2_4:21349466-21349485 | None:intergenic | 15.0% |
| !! | CATTAATTATTGTCTATATT+TGG | + | chr2_4:21349464-21349483 | Msa0320680:intron | 15.0% |
| !!! | ATTTTAGAAAAAGATAAACT+TGG | + | chr2_4:21349527-21349546 | Msa0320680:intron | 15.0% |
| !!! | TTTTAGAAAAAGATAAACTT+GGG | + | chr2_4:21349528-21349547 | Msa0320680:intron | 15.0% |
| !! | ATAAAAGCTTATTATTAGTA+AGG | + | chr2_4:21349709-21349728 | Msa0320680:intron | 15.0% |
| !! | GATAAATAAAAGTTTATACA+CGG | - | chr2_4:21351162-21351181 | None:intergenic | 15.0% |
| !! | CTTAAATAGAACTTAAAATA+AGG | - | chr2_4:21351191-21351210 | None:intergenic | 15.0% |
| !! | TGTAATTAAAGAACATTGAA+AGG | + | chr2_4:21349415-21349434 | Msa0320680:intron | 20.0% |
| !! | ATTATTGTCTATATTTGGAT+TGG | + | chr2_4:21349469-21349488 | Msa0320680:intron | 20.0% |
| !!! | ATAAGCTTTTATATGTTTGT+AGG | - | chr2_4:21349701-21349720 | None:intergenic | 20.0% |
| !!! | AAATGGATTGTAAATTAGTA+GGG | - | chr2_4:21350533-21350552 | None:intergenic | 20.0% |
| !!! | AAAATGGATTGTAAATTAGT+AGG | - | chr2_4:21350534-21350553 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCAAATAATTAC+TGG | - | chr2_4:21350854-21350873 | None:intergenic | 20.0% |
| !! | CCAGTAATTATTTGAAAAAA+TGG | + | chr2_4:21350851-21350870 | Msa0320680:intron | 20.0% |
| !!! | ATTTTAAGTTCTATTTAAGC+TGG | + | chr2_4:21351192-21351211 | Msa0320680:intron | 20.0% |
| !!! | CTTTAATCATTTATGTTTTC+AGG | + | chr2_4:21351260-21351279 | Msa0320680:intron | 20.0% |
| !!! | AAAAAGATTCTGTAATTTTC+AGG | + | chr2_4:21351399-21351418 | Msa0320680:intron | 20.0% |
| !! | TCAGAACATGAAAATTAAAT+TGG | + | chr2_4:21351471-21351490 | Msa0320680:CDS | 20.0% |
| !! | AAAATTAAATTGGTTGTTCT+TGG | + | chr2_4:21351481-21351500 | Msa0320680:CDS | 20.0% |
| !! | GATAAAGATATGAATGTTAT+TGG | + | chr2_4:21351866-21351885 | Msa0320680:intron | 20.0% |
| !!! | ATTGGTAATTGTTAAATAGA+AGG | + | chr2_4:21351884-21351903 | Msa0320680:intron | 20.0% |
| !! | TAATTGTTAAATAGAAGGAA+AGG | + | chr2_4:21351889-21351908 | Msa0320680:intron | 20.0% |
| !! | AATTGTTAAATAGAAGGAAA+GGG | + | chr2_4:21351890-21351909 | Msa0320680:intron | 20.0% |
| !!! | TATTTAGGTTCTTTTTGAAT+TGG | + | chr2_4:21352008-21352027 | Msa0320680:intron | 20.0% |
| !! | AAAGAACATTGAAAGGATTT+TGG | + | chr2_4:21349422-21349441 | Msa0320680:intron | 25.0% |
| !!! | ATCTTTTTCTAAAATCACAG+TGG | - | chr2_4:21349522-21349541 | None:intergenic | 25.0% |
| !! | ACCATATCTTTTCTTAAAGT+CGG | - | chr2_4:21350162-21350181 | None:intergenic | 25.0% |
| !!! | TAAAGTTTGTTGACATCTTA+AGG | + | chr2_4:21350249-21350268 | Msa0320680:intron | 25.0% |
| ! | TGAAAAGCTATTAAAAGTGA+AGG | + | chr2_4:21350376-21350395 | Msa0320680:CDS | 25.0% |
| ! | CATGTTAGAAAATATAGACA+AGG | + | chr2_4:21350424-21350443 | Msa0320680:CDS | 25.0% |
| !!! | TTTTAGAGAAAACGTGAAAA+TGG | - | chr2_4:21350550-21350569 | None:intergenic | 25.0% |
| ! | AAATGTTAAGAACAATGTGA+AGG | + | chr2_4:21350720-21350739 | Msa0320680:intron | 25.0% |
| ! | AGAACTTAAAATAAGGCAAT+GGG | - | chr2_4:21351184-21351203 | None:intergenic | 25.0% |
| ! | TAGAACTTAAAATAAGGCAA+TGG | - | chr2_4:21351185-21351204 | None:intergenic | 25.0% |
| ! | CTGTTCAAATTAGCAATAAT+TGG | + | chr2_4:21351558-21351577 | Msa0320680:intron | 25.0% |
| ! | TAATTGGAAGTTTACTAATC+AGG | + | chr2_4:21351574-21351593 | Msa0320680:intron | 25.0% |
| !! | ACATGAAATCATATTTTACC+AGG | + | chr2_4:21351653-21351672 | Msa0320680:intron | 25.0% |
| ! | TATATCAATTTATCCTGTGA+TGG | + | chr2_4:21351913-21351932 | Msa0320680:intron | 25.0% |
| !! | TCCATTTTTCCAAAAGGTTT+CGG | + | chr2_4:21349666-21349685 | Msa0320680:intron | 30.0% |
| ! | TGTTTATTTCCGAAACCTTT+TGG | - | chr2_4:21349678-21349697 | None:intergenic | 30.0% |
| AGTTATATTTAGTGAGAGCA+TGG | - | chr2_4:21349930-21349949 | None:intergenic | 30.0% | |
| ! | GACTTTAAGAAAAGATATGG+TGG | + | chr2_4:21350161-21350180 | Msa0320680:CDS | 30.0% |
| TTTAAGAAAAGATATGGTGG+TGG | + | chr2_4:21350164-21350183 | Msa0320680:CDS | 30.0% | |
| ! | AAATTCCTTGTTCAGACTTT+TGG | - | chr2_4:21350210-21350229 | None:intergenic | 30.0% |
| AAAAGTCTGAACAAGGAATT+TGG | + | chr2_4:21350209-21350228 | Msa0320680:CDS | 30.0% | |
| AAAGTCTGAACAAGGAATTT+GGG | + | chr2_4:21350210-21350229 | Msa0320680:CDS | 30.0% | |
| TTCATGTGCTCTTTCATAAT+CGG | - | chr2_4:21350329-21350348 | None:intergenic | 30.0% | |
| !!! | AGACAAGGTACTGTTTTTTT+AGG | + | chr2_4:21350439-21350458 | Msa0320680:intron | 30.0% |
| TTCTACCACAGTTATCATTA+TGG | + | chr2_4:21350501-21350520 | Msa0320680:intron | 30.0% | |
| !! | TCACGTTTTCTCTAAAAATG+TGG | + | chr2_4:21350553-21350572 | Msa0320680:intron | 30.0% |
| !! | CACGTTTTCTCTAAAAATGT+GGG | + | chr2_4:21350554-21350573 | Msa0320680:intron | 30.0% |
| !! | ACGTTTTCTCTAAAAATGTG+GGG | + | chr2_4:21350555-21350574 | Msa0320680:intron | 30.0% |
| ! | AGTTACTCAAAGTTTCAAGT+GGG | - | chr2_4:21351081-21351100 | None:intergenic | 30.0% |
| !!! | TCTTGGAATTCTGTTGTTTT+TGG | + | chr2_4:21351498-21351517 | Msa0320680:CDS | 30.0% |
| !!! | TGTTTTTGGTTCTAGTTATC+TGG | + | chr2_4:21351512-21351531 | Msa0320680:intron | 30.0% |
| TATGAAGTGATATTATGACC+TGG | - | chr2_4:21351674-21351693 | None:intergenic | 30.0% | |
| GAAGATGGTGAAAATATGAT+TGG | + | chr2_4:21351708-21351727 | Msa0320680:intron | 30.0% | |
| ! | TTAGGTTCTTTTTGAATTGG+TGG | + | chr2_4:21352011-21352030 | Msa0320680:intron | 30.0% |
| !!! | TTTGAATTGGTGGTTTTAGA+TGG | + | chr2_4:21352021-21352040 | Msa0320680:CDS | 30.0% |
| AAGTTGACTATGTGCATGTT+TGG | - | chr2_4:21349606-21349625 | None:intergenic | 35.0% | |
| !! | TACAGCTCCATTTTTCCAAA+AGG | + | chr2_4:21349660-21349679 | Msa0320680:intron | 35.0% |
| !! | TCCGAAACCTTTTGGAAAAA+TGG | - | chr2_4:21349670-21349689 | None:intergenic | 35.0% |
| ! | ATATTTAGTGAGAGCATGGA+AGG | - | chr2_4:21349926-21349945 | None:intergenic | 35.0% |
| ! | GCCGACTTTAAGAAAAGATA+TGG | + | chr2_4:21350158-21350177 | Msa0320680:CDS | 35.0% |
| TATTGCCAAAAGTCTGAACA+AGG | + | chr2_4:21350202-21350221 | Msa0320680:CDS | 35.0% | |
| AGGATCCATAATGATAACTG+TGG | - | chr2_4:21350509-21350528 | None:intergenic | 35.0% | |
| ! | GAAGTGGATTTGATTCTGAT+AGG | + | chr2_4:21350581-21350600 | Msa0320680:intron | 35.0% |
| AACAATGTGAAGGACATGAT+TGG | + | chr2_4:21350730-21350749 | Msa0320680:intron | 35.0% | |
| GCTTCGTAGGTCATAAATAA+CGG | - | chr2_4:21350806-21350825 | None:intergenic | 35.0% | |
| AACATTGCAATATGTAGCAC+TGG | - | chr2_4:21350967-21350986 | None:intergenic | 35.0% | |
| CAGTTACTCAAAGTTTCAAG+TGG | - | chr2_4:21351082-21351101 | None:intergenic | 35.0% | |
| AGACAATGCAAGGAATTCAT+AGG | - | chr2_4:21351113-21351132 | None:intergenic | 35.0% | |
| ACATACACAAAGACAATGCA+AGG | - | chr2_4:21351123-21351142 | None:intergenic | 35.0% | |
| !! | TGTTTTCAGGCTATTGATAG+AGG | + | chr2_4:21351273-21351292 | Msa0320680:intron | 35.0% |
| AAAACAGTGTTGTCTAACCT+TGG | - | chr2_4:21351357-21351376 | None:intergenic | 35.0% | |
| TCACTTCATAAGTTATCGCA+TGG | + | chr2_4:21351684-21351703 | Msa0320680:intron | 35.0% | |
| TAGAAGAAAATCAACCCAGA+AGG | + | chr2_4:21351798-21351817 | Msa0320680:intron | 35.0% | |
| AGAAGAAAATCAACCCAGAA+GGG | + | chr2_4:21351799-21351818 | Msa0320680:intron | 35.0% | |
| !! | ATTTGGATTGGCAGTGAGTT+TGG | + | chr2_4:21349481-21349500 | Msa0320680:intron | 40.0% |
| !! | CAGTGAGTTTGGTGTAATCA+CGG | + | chr2_4:21349492-21349511 | Msa0320680:intron | 40.0% |
| TGGGAGCTTCAACAAAATCA+CGG | + | chr2_4:21349547-21349566 | Msa0320680:intron | 40.0% | |
| GAGCTGTAGAAGTAGAAAGT+TGG | - | chr2_4:21349648-21349667 | None:intergenic | 40.0% | |
| ! | ACTCTCTATAAAGGCGTATC+TGG | - | chr2_4:21349848-21349867 | None:intergenic | 40.0% |
| !! | ACGCCTTTATAGAGAGTATC+AGG | + | chr2_4:21349851-21349870 | Msa0320680:intron | 40.0% |
| !! | CGCCTTTATAGAGAGTATCA+GGG | + | chr2_4:21349852-21349871 | Msa0320680:intron | 40.0% |
| TGCCCTGATACTCTCTATAA+AGG | - | chr2_4:21349857-21349876 | None:intergenic | 40.0% | |
| ! | CTGCTTGCTAACAGATTCTT+TGG | - | chr2_4:21350108-21350127 | None:intergenic | 40.0% |
| CTGTGGTAGAAAATGATGTC+AGG | - | chr2_4:21350492-21350511 | None:intergenic | 40.0% | |
| GGATTGTAAATTAGTAGGGC+AGG | - | chr2_4:21350529-21350548 | None:intergenic | 40.0% | |
| TAAAAATGTGGGGAGTGAAG+TGG | + | chr2_4:21350565-21350584 | Msa0320680:intron | 40.0% | |
| GGATTTGATTCTGATAGGAC+TGG | + | chr2_4:21350586-21350605 | Msa0320680:intron | 40.0% | |
| !! | ATGATAGTGTGAGCTTTTCC+TGG | - | chr2_4:21350662-21350681 | None:intergenic | 40.0% |
| ! | ACAGCAGTGATTAGCTGATT+AGG | - | chr2_4:21351038-21351057 | None:intergenic | 40.0% |
| TTTATACACGGTCTTCGCTT+TGG | - | chr2_4:21351150-21351169 | None:intergenic | 40.0% | |
| GCTCAAGATTTCAGAAAGCA+AGG | + | chr2_4:21351421-21351440 | Msa0320680:CDS | 40.0% | |
| TTTCAGAAAGCAAGGAACAC+AGG | + | chr2_4:21351429-21351448 | Msa0320680:CDS | 40.0% | |
| !! | GTTATCTGGCTCTCTATTTG+TGG | + | chr2_4:21351526-21351545 | Msa0320680:intron | 40.0% |
| AAGTTATCGCATGGTGAAGA+TGG | + | chr2_4:21351693-21351712 | Msa0320680:intron | 40.0% | |
| GAAGAAAATCAACCCAGAAG+GGG | + | chr2_4:21351800-21351819 | Msa0320680:intron | 40.0% | |
| AAAGTTTCCTACCTTGTTGC+TGG | + | chr2_4:21351841-21351860 | Msa0320680:intron | 40.0% | |
| ATCTTTATCCACCAGCAACA+AGG | - | chr2_4:21351855-21351874 | None:intergenic | 40.0% | |
| GTATCTGGTGAGAATGTGAG+AGG | - | chr2_4:21349833-21349852 | None:intergenic | 45.0% | |
| GACACGTTCAAGGAAAGCAA+TGG | - | chr2_4:21350135-21350154 | None:intergenic | 45.0% | |
| !!! | ACCATTTTCGAGTAGTGTCC+AGG | + | chr2_4:21350641-21350660 | Msa0320680:intron | 45.0% |
| TCCTGGACACTACTCGAAAA+TGG | - | chr2_4:21350645-21350664 | None:intergenic | 45.0% | |
| !! | GAAGCACTGACACAGACATT+GGG | + | chr2_4:21350821-21350840 | Msa0320680:intron | 45.0% |
| !! | GTCGGTGTCAAAAACCAACA+CGG | - | chr2_4:21350907-21350926 | None:intergenic | 45.0% |
| ! | CTTCAAATTGAAGGCATGGC+TGG | - | chr2_4:21350942-21350961 | None:intergenic | 45.0% |
| GGCACTTCAAATTGAAGGCA+TGG | - | chr2_4:21350946-21350965 | None:intergenic | 45.0% | |
| ! | GCACTGGCACTTCAAATTGA+AGG | - | chr2_4:21350951-21350970 | None:intergenic | 45.0% |
| TCTGATACCACATCTTCCGA+CGG | - | chr2_4:21351456-21351475 | None:intergenic | 45.0% | |
| !! | ATCTGGCTCTCTATTTGTGG+TGG | + | chr2_4:21351529-21351548 | Msa0320680:intron | 45.0% |
| TTATCCACCAGCAACAAGGT+AGG | - | chr2_4:21351851-21351870 | None:intergenic | 45.0% | |
| CAGATCAAACAGTCCATCAC+AGG | - | chr2_4:21351929-21351948 | None:intergenic | 45.0% | |
| !! | TATAAAAAGTTTAATAATAT+GGG | + | chr2_4:21350289-21350308 | Msa0320680:intron | 5.0% |
| GGATGGTCATTGATCAGTGG+AGG | + | chr2_4:21349344-21349363 | Msa0320680:intron | 50.0% | |
| ! | AGTCGGCTTTGACACGTTCA+AGG | - | chr2_4:21350145-21350164 | None:intergenic | 50.0% |
| CAAAACTGCCAGTGTGAGGA+AGG | - | chr2_4:21350782-21350801 | None:intergenic | 50.0% | |
| TGTCTGTGTCAGTGCTTCGT+AGG | - | chr2_4:21350819-21350838 | None:intergenic | 50.0% | |
| !! | CGAAGCACTGACACAGACAT+TGG | + | chr2_4:21350820-21350839 | Msa0320680:intron | 50.0% |
| ! | GCGCACAAGTAAGTTGACCA+AGG | + | chr2_4:21351337-21351356 | Msa0320680:intron | 50.0% |
| AGTGAGAAACTGCCCCTTCT+GGG | - | chr2_4:21351815-21351834 | None:intergenic | 50.0% | |
| AAGTGAGAAACTGCCCCTTC+TGG | - | chr2_4:21351816-21351835 | None:intergenic | 50.0% | |
| AGAAGGGGCAGTTTCTCACT+TGG | + | chr2_4:21351815-21351834 | Msa0320680:intron | 50.0% | |
| GTTTCCTACCTTGTTGCTGG+TGG | + | chr2_4:21351844-21351863 | Msa0320680:intron | 50.0% | |
| TCCTTGCACCTTCCTCACAC+TGG | + | chr2_4:21350771-21350790 | Msa0320680:intron | 55.0% | |
| CGGACAAAACTGCCAGTGTG+AGG | - | chr2_4:21350786-21350805 | None:intergenic | 55.0% | |
| !! | CGGCACTGACATGTGTGGTT+GGG | - | chr2_4:21350887-21350906 | None:intergenic | 55.0% |
| !! | ACGGCACTGACATGTGTGGT+TGG | - | chr2_4:21350888-21350907 | None:intergenic | 55.0% |
| !! | CAACACGGCACTGACATGTG+TGG | - | chr2_4:21350892-21350911 | None:intergenic | 55.0% |
| CACACATGTCAGTGCCGTGT+TGG | + | chr2_4:21350890-21350909 | Msa0320680:intron | 55.0% | |
| GGCTGGTGTCTGACATGTGT+CGG | - | chr2_4:21350925-21350944 | None:intergenic | 55.0% | |
| AGCAAGGAACACAGGTCCGT+CGG | + | chr2_4:21351437-21351456 | Msa0320680:CDS | 55.0% | |
| ! | GCCAGTGTGAGGAAGGTGCA+AGG | - | chr2_4:21350775-21350794 | None:intergenic | 60.0% |
| CACAGGTCCGTCGGAAGATG+TGG | + | chr2_4:21351446-21351465 | Msa0320680:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 21349342 | 21352071 | 21349342 | ID=Msa0320680;Name=Msa0320680 |
| chr2_4 | mRNA | 21349342 | 21352071 | 21349342 | ID=Msa0320680-mRNA-1;Parent=Msa0320680;Name=Msa0320680-mRNA-1;_AED=0.26;_eAED=0.28;_QI=0|0|0|0.57|1|1|7|0|173 |
| chr2_4 | exon | 21349342 | 21349348 | 21349342 | ID=Msa0320680-mRNA-1:exon:7887;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21350090 | 21350252 | 21350090 | ID=Msa0320680-mRNA-1:exon:7888;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21350325 | 21350445 | 21350325 | ID=Msa0320680-mRNA-1:exon:7889;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21351282 | 21351344 | 21351282 | ID=Msa0320680-mRNA-1:exon:7890;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21351421 | 21351525 | 21351421 | ID=Msa0320680-mRNA-1:exon:7891;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21351906 | 21351911 | 21351906 | ID=Msa0320680-mRNA-1:exon:7892;Parent=Msa0320680-mRNA-1 |
| chr2_4 | exon | 21352015 | 21352071 | 21352015 | ID=Msa0320680-mRNA-1:exon:7893;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21349342 | 21349348 | 21349342 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21350090 | 21350252 | 21350090 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21350325 | 21350445 | 21350325 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21351282 | 21351344 | 21351282 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21351421 | 21351525 | 21351421 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21351906 | 21351911 | 21351906 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| chr2_4 | CDS | 21352015 | 21352071 | 21352015 | ID=Msa0320680-mRNA-1:cds;Parent=Msa0320680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
